RID: 6ZVT83YD01N Job Title:POL2_BBWV2 Q9Q2Q3 RNA2 polyprotein (119kDa Program: BLASTP Query: POL2_BBWV2 Q9Q2Q3 RNA2 polyprotein (119kDa protein) (Genome polyprotein M) (VP53) (53 kDa protein) (Movement protein) (MP) (37 kDa protein) (VP37) (Large capsid protein) (LCP) (44 kDa protein) (Small capsid protein) (SCP) (22 kDa protein) ID: lcl|Query_651611(amino acid) Length: 402 Database: swissprot Non-redundant UniProtKB/SwissProt sequences Sequences producing significant alignments: Scientific Common Max Total Query E Per. Acc. Description Name Name Taxid Score Score cover Value Ident Len Accession RecName: Full=RNA2 polyprotein; AltName: Full=119kDa protein;... Broad bean w... NA 76875 798 798 100% 0.0 100.00 1065 Q9Q2Q3.1 RecName: Full=RNA2 polyprotein; AltName: Full=119kDa protein;... Broad bean w... NA 649895 560 560 100% 0.0 64.18 1018 Q76L39.1 RecName: Full=RNA2 polyprotein; AltName: Full=Genome polyprote... Squash mosai... NA 36401 79.3 79.3 85% 5e-16 22.54 1009 P36341.3 RecName: Full=RNA2 polyprotein; AltName: Full=Genome polyprote... Cowpea sever... NA 31716 76.3 76.3 79% 5e-15 20.91 1002 P31630.1 RecName: Full=RNA2 polyprotein; AltName: Full=Genome polyprote... Bean-pod mot... NA 31715 63.2 63.2 63% 9e-11 20.61 1018 P23009.2 RecName: Full=RNA2 polyprotein; AltName: Full=Genome polyprote... Red clover m... NA 12262 52.0 52.0 37% 3e-07 21.85 996 P13561.1 RecName: Full=RNA2 polyprotein; AltName: Full=Genome polyprote... Cowpea mosai... NA 928299 48.1 48.1 74% 4e-06 21.59 1046 P03599.1 Alignments: >RecName: Full=RNA2 polyprotein; AltName: Full=119kDa protein; AltName: Full=Genome polyprotein M; Contains: RecName: Full=VP53; AltName: Full=53 kDa protein; Contains: RecName: Full=Movement protein; Short=MP; AltName: Full=37 kDa protein; AltName: Full=VP37; Contains: RecName: Full=Large capsid protein; Short=LCP; AltName: Full=44 kDa protein; Contains: RecName: Full=Small capsid protein; Short=SCP; AltName: Full=22 kDa protein [Broad bean wilt virus 2] Sequence ID: Q9Q2Q3.1 Length: 1065 Range 1: 467 to 868 Score:798 bits(2061), Expect:0.0, Method:Compositional matrix adjust., Identities:402/402(100%), Positives:402/402(100%), Gaps:0/402(0%) Query 1 GLMEEDVLNVQTNNFAIESATETMRLLFSGYASIPLNVIPGTKITVAYLNELSKHSAVHT 60 GLMEEDVLNVQTNNFAIESATETMRLLFSGYASIPLNVIPGTKITVAYLNELSKHSAVHT Sbjct 467 GLMEEDVLNVQTNNFAIESATETMRLLFSGYASIPLNVIPGTKITVAYLNELSKHSAVHT 526 Query 61 GLLNMLSKIPGSLKVKINCQVAPTCGIGLAVSYVEGNESANLGSSLGRLLGIQHYKWNPA 120 GLLNMLSKIPGSLKVKINCQVAPTCGIGLAVSYVEGNESANLGSSLGRLLGIQHYKWNPA Sbjct 527 GLLNMLSKIPGSLKVKINCQVAPTCGIGLAVSYVEGNESANLGSSLGRLLGIQHYKWNPA 586 Query 121 IEPYVEFVFKPFSCADWWNMHYLGSFKFAPVVVIQTLSKWLNAPKVDARISFAIYYEPTV 180 IEPYVEFVFKPFSCADWWNMHYLGSFKFAPVVVIQTLSKWLNAPKVDARISFAIYYEPTV Sbjct 587 IEPYVEFVFKPFSCADWWNMHYLGSFKFAPVVVIQTLSKWLNAPKVDARISFAIYYEPTV 646 Query 181 VLPKQIATLEHAPAFMFRKEVGTLAFKQGERVAYSFEVNLGKPQTDGKEVTSTFASSYCG 240 VLPKQIATLEHAPAFMFRKEVGTLAFKQGERVAYSFEVNLGKPQTDGKEVTSTFASSYCG Sbjct 647 VLPKQIATLEHAPAFMFRKEVGTLAFKQGERVAYSFEVNLGKPQTDGKEVTSTFASSYCG 706 Query 241 LSQYMQSDVILDFTLMSSPMIGGTFSIAYVAGAYIEKVGNMQILDSLPHIDFTFSSGSKS 300 LSQYMQSDVILDFTLMSSPMIGGTFSIAYVAGAYIEKVGNMQILDSLPHIDFTFSSGSKS Sbjct 707 LSQYMQSDVILDFTLMSSPMIGGTFSIAYVAGAYIEKVGNMQILDSLPHIDFTFSSGSKS 766 Query 301 TRSVRFPKEVFGVYQALDRWDLDSARGDDVSGNFVLYQRDAVSSALEGELTFRIAARLSG 360 TRSVRFPKEVFGVYQALDRWDLDSARGDDVSGNFVLYQRDAVSSALEGELTFRIAARLSG Sbjct 767 TRSVRFPKEVFGVYQALDRWDLDSARGDDVSGNFVLYQRDAVSSALEGELTFRIAARLSG 826 Query 361 DISFTGVSAGYPttitrigkgktigrSLDPEIRKPLRYMLGQ 402 DISFTGVSAGYPTTITRIGKGKTIGRSLDPEIRKPLRYMLGQ Sbjct 827 DISFTGVSAGYPTTITRIGKGKTIGRSLDPEIRKPLRYMLGQ 868 >RecName: Full=RNA2 polyprotein; AltName: Full=119kDa protein; AltName: Full=Genome polyprotein M; Contains: RecName: Full=VP53; AltName: Full=53 kDa protein; Contains: RecName: Full=Movement protein; Short=MP; AltName: Full=37 kDa protein; AltName: Full=VP37; Contains: RecName: Full=Large capsid protein; Short=LCP; AltName: Full=44 kDa protein; Contains: RecName: Full=Small capsid protein; Short=SCP; AltName: Full=22 kDa protein [Broad bean wilt virus 1 ATCC PV132] Sequence ID: Q76L39.1 Length: 1018 Range 1: 420 to 821 Score:560 bits(1443), Expect:0.0, Method:Compositional matrix adjust., Identities:258/402(64%), Positives:323/402(80%), Gaps:0/402(0%) Query 1 GLMEEDVLNVQTNNFAIESATETMRLLFSGYASIPLNVIPGTKITVAYLNELSKHSAVHT 60 LMEEDVL Q + F + + ETMRLLFSG ++IP+NV+ GTKI+VAYLNEL+ H VH Sbjct 420 ALMEEDVLEAQVDMFPLHNVAETMRLLFSGVSTIPMNVVEGTKISVAYLNELATHPGVHV 479 Query 61 GLLNMLSKIPGSLKVKINCQVAPTCGIGLAVSYVEGNESANLGSSLGRLLGIQHYKWNPA 120 +LNML +IPGS+ +++C+VAPTCGIGLA +YVEGNESA LG+ LGRLLGIQH KWNPA Sbjct 480 PILNMLGRIPGSILARVHCEVAPTCGIGLAATYVEGNESAALGTDLGRLLGIQHVKWNPA 539 Query 121 IEPYVEFVFKPFSCADWWNMHYLGSFKFAPVVVIQTLSKWLNAPKVDARISFAIYYEPTV 180 IEP EF FKPFSC DWWNMHYLGS KF+PV+ LSKW+N PK + ++S+A+Y+EP + Sbjct 540 IEPVKEFRFKPFSCVDWWNMHYLGSSKFSPVLAFVCLSKWINPPKGECKMSYALYFEPDI 599 Query 181 VLPKQIATLEHAPAFMFRKEVGTLAFKQGERVAYSFEVNLGKPQTDGKEVTSTFASSYCG 240 +LP+QIA+L P+FM RKE+GTL+FKQGER AY+FEVN GKPQ +GK VT FAS+YCG Sbjct 600 ILPRQIASLNSVPSFMLRKELGTLSFKQGERRAYAFEVNFGKPQVEGKSVTLNFASAYCG 659 Query 241 LSQYMQSDVILDFTLMSSPMIGGTFSIAYVAGAYIEKVGNMQILDSLPHIDFTFSSGSKS 300 LSQYM+SD+++D TLMSSPM+GGTF++AYVAG+Y++ + NMQ LD+LPHI F F G KS Sbjct 660 LSQYMESDIVIDLTLMSSPMMGGTFTLAYVAGSYLKSIKNMQFLDALPHITFNFEKGGKS 719 Query 301 TRSVRFPKEVFGVYQALDRWDLDSARGDDVSGNFVLYQRDAVSSALEGELTFRIAARLSG 360 TRS+RFP +F YQ+LDRWDL+++R DDVSG+FVLYQRD VSSALEG+L FR++AR+SG Sbjct 720 TRSLRFPSRLFPTYQSLDRWDLNASREDDVSGHFVLYQRDTVSSALEGDLVFRVSARVSG 779 Query 361 DISFTGVSAGYPttitrigkgktigrSLDPEIRKPLRYMLGQ 402 + GVS GYPTT+TR GK RSL ++RKP+ GQ Sbjct 780 EPMMHGVSVGYPTTLTRATTGKMSSRSLGEKVRKPIGLAKGQ 821 >RecName: Full=RNA2 polyprotein; AltName: Full=Genome polyprotein M; AltName: Full=M RNA polyprotein; AltName: Full=Middle component RNA polyprotein; AltName: Full=P2; Contains: RecName: Full=VP58; Contains: RecName: Full=Movement protein; Short=MP; Contains: RecName: Full=Large capsid protein; Short=LCP; AltName: Full=42k coat protein; AltName: Full=Coat protein VP42; AltName: Full=L subunit; AltName: Full=Large coat protein; Contains: RecName: Full=Small capsid protein; Short=SCP; AltName: Full=22k coat protein; AltName: Full=Coat protein VP22; AltName: Full=S subunit [Squash mosaic virus (strain melon)] Sequence ID: P36341.3 Length: 1009 Range 1: 471 to 799 Score:79.3 bits(194), Expect:5e-16, Method:Compositional matrix adjust., Identities:78/346(23%), Positives:140/346(40%), Gaps:20/346(5%) Query 16 AIESATETMRLLFSGYASIPLNVIPGTKITVAYLNELSKHSAVHTGLLNMLSKIPGSLKV 75 A+++ T R++ S ++ N + + +L + ++ +A+ L I G ++ Sbjct 471 ALQTKLATSRIILS--KTMVGNTVLREDLLATFLQDSNERAAID---LIRTHVIRGKIRC 525 Query 76 KINCQVAPTCGIGLAVSYVEGNESANLGSSLGRLLGIQHYKWNPAIEPYVEFVFKPFSCA 135 + V G LA+ + G A + + WNPA E VE F P C Sbjct 526 VASINVPENTGCALAICFNSGITGA-ADTDIYTTSSQDAIVWNPACEKAVELTFNPNPCG 584 Query 136 DWWNMHYLGSFK--FAPVVVIQTLSKWLNAPKVDARISFAIYYEPTVVLPKQIATLEHAP 193 D WN +L K FA +Q ++ W P D + + + ++ +PK + Sbjct 585 DAWNFVFLQQTKAHFA----VQCVTGWTTTPLTDLALVLTWHIDRSLCVPKTLTISSAHA 640 Query 194 AFMFRKEVGTLAFKQG-ERVAYSFEVNLGKPQTDGKEVTSTFASSYCGLSQYMQSDVILD 252 +F + +G L+F QG RV + +G + ++ L +Y + D + + Sbjct 641 SFPINRWMGKLSFPQGPARVLKRMPLAIGGGAGTKDAILMNMPNAVISLHRYFRGDFVFE 700 Query 253 FTLMSSPMIGGTFSIAYVAGAYIEKVGNMQILDSLPHIDFTFSSGSKSTRSVRFPKEVFG 312 T MSSP I T + G E++ N L+S PH F+ T ++ F + F Sbjct 701 ITKMSSPYIKATIAFFIAFGDITEEMTN---LESFPHKLVQFAEIQGRT-TITFTQSEFL 756 Query 313 VYQALDRWDLDSARGDDVSGNFVLYQRDAVSSALEGELTFRIAARL 358 + + + D + L D+ +S +EG F I +L Sbjct 757 TAWSTQVLSTVNPQKDGCPHLYALLH-DSATSTIEGN--FVIGVKL 799 >RecName: Full=RNA2 polyprotein; AltName: Full=Genome polyprotein M; AltName: Full=M RNA polyprotein; AltName: Full=Middle component RNA polyprotein; AltName: Full=P2; Contains: RecName: Full=VP58; AltName: Full=P58; Contains: RecName: Full=Movement protein; Short=MP; Contains: RecName: Full=Large capsid protein; Short=LCP; AltName: Full=Coat protein VP37; AltName: Full=L subunit; AltName: Full=Large coat protein; Contains: RecName: Full=Small capsid protein precursor; AltName: Full=S subunit; Contains: RecName: Full=Mature small capsid protein; Short=SCP; AltName: Full=Coat protein VP23; AltName: Full=Small capsid protein, N-terminus part; AltName: Full=Small coat protein, N-terminus part; Contains: RecName: Full=Small capsid protein C-terminus part; AltName: Full=Small coat protein C-terminus part [Cowpea severe mosaic virus (strain DG)] Sequence ID: P31630.1 Length: 1002 Range 1: 465 to 779 Score:76.3 bits(186), Expect:5e-15, Method:Compositional matrix adjust., Identities:69/330(21%), Positives:135/330(40%), Gaps:24/330(7%) Query 34 IPLNVIPGTKITVAYLNELSKHSAVHTGL-LNMLSKIPGSLKVKINCQVAPTCGIGLAVS 92 IP ++ GT + L+++ + + + + L I G + V + A G+GLA+ Sbjct 465 IPKTLVAGTVLKSGPLSDVMQQGSFRSTIALQRTHIITGKIHVVAMLETAVNTGLGLAIC 524 Query 93 Y---VEGNESANLGSSLGRLLGIQHYKWNPAIEPYVEFVFKPFSCADWWNMHYLGSFKFA 149 + + G SA++ ++ + I WNP+ +++ F P C+D W++ +L + Sbjct 525 FNSGIRGKASADIYATCSQDAMI----WNPSCTKVMQYAFNPNPCSDGWSLAFLERTGYH 580 Query 150 PVVVIQTLSKWLNAPKVDARISFAIYYEPTVVLPKQIATLEHAPAFMFRKEVGTLAF-KQ 208 VV ++ W P D ++ + +PK + P M + +G F +Q Sbjct 581 CVVT--CVTGWTGTPLQDTFMTINWHISREACVPKIYTIFDPEPDMMLNRWMGRAIFPQQ 638 Query 209 GERVAYSFEVNLGKPQTDGKEVTSTFASSYCGLSQYMQSDVILDFTLMSSPMIGGTFSIA 268 +V +++G + ++ + +Y ++D+ + MSSP I T + Sbjct 639 STQVVRRMPLSIGGGAGAKNSILMNLPNAILSMWRYFKADLEFELIKMSSPYINATIAFF 698 Query 269 YVAGAYIEKVGNMQILDSLPHIDFTFSSGSKSTRSVRFPKEVFGVYQALDRWDL----DS 324 G + N ++ PH FS T ++ F K+ F L W D+ Sbjct 699 VAFGDLSDDTVN---FEAFPHKLIVFSDKQDRT-TISFSKDEF-----LMAWSTQVRPDT 749 Query 325 ARGDDVSGNFVLYQRDAVSSALEGELTFRI 354 +D + VSS++EG+ I Sbjct 750 KLSEDGCPYLYAITHNGVSSSVEGDFILGI 779 >RecName: Full=RNA2 polyprotein; AltName: Full=Genome polyprotein M; AltName: Full=M RNA polyprotein; AltName: Full=Middle component RNA polyprotein; AltName: Full=P2; Contains: RecName: Full=VP58; AltName: Full=P58; Contains: RecName: Full=Movement protein; Short=MP; Contains: RecName: Full=Large capsid protein; Short=LCP; AltName: Full=Coat protein VP42; AltName: Full=L subunit; AltName: Full=Large coat protein; Contains: RecName: Full=Small capsid protein precursor; AltName: Full=S subunit; Contains: RecName: Full=Mature small capsid protein; Short=SCP; AltName: Full=Coat protein VP22; AltName: Full=Small capsid protein, N-terminus part; AltName: Full=Small coat protein, N-terminus part; Contains: RecName: Full=Small capsid protein C-terminus part; AltName: Full=Small coat protein C-terminus part [Bean-pod mottle virus (strain Kentucky G7)] Sequence ID: P23009.2 Length: 1018 Range 1: 477 to 729 Score:63.2 bits(152), Expect:9e-11, Method:Compositional matrix adjust., Identities:54/262(21%), Positives:107/262(40%), Gaps:14/262(5%) Query 33 SIPLNVIPGTKITVAYL-NELSKHSAVHTGLLNMLSKIPGSLKVKINCQVAPTCGIGLAV 91 ++P N + GT + L N L++ + + L +I G +K+ + GI LA Sbjct 477 ALPKNTVGGTILRSDLLANFLTEGNFRASVDLQRTHRIKGMIKMVATVGIPENTGIALAC 536 Query 92 ---SYVEGNESANLGSSLGRLLGIQHYKWNPAIEPYVEFVFKPFSCADWWNMHYLGSFKF 148 S + G S+++ + + + WNPA + F P C+D W++ +L F Sbjct 537 AMNSSIRGRASSDIYTICSQDCEL----WNPACTKAMTMSFNPNPCSDAWSLEFLKRTGF 592 Query 149 APVVVIQTLSKWLNAPKVDARISFAIYYEPTVVLPKQIATLEHAPAFMFRKEVGTLAFKQ 208 ++ ++ W P D +++ + +P+ L F+ + +G L F Q Sbjct 593 HCDII--CVTGWTATPMQDVQVTIDWFISSQECVPRTYCVLNPQNPFVLNRWMGKLTFPQ 650 Query 209 G-ERVAYSFEVNLGKPQTDGKEVTSTFASSYCGLSQYMQSDVILDFTLMSSPMIGGTFSI 267 G R +++G + ++ + +Y D++ + + M+SP I T S Sbjct 651 GTSRSVKRMPLSIGGGAGAKSAILMNMPNAVLSMWRYFVGDLVFEVSKMTSPYIKCTVSF 710 Query 268 AYVAGAYIEKVGNMQILDSLPH 289 G + N ++ PH Sbjct 711 FIAFGNLADDTIN---FEAFPH 729 >RecName: Full=RNA2 polyprotein; AltName: Full=Genome polyprotein M; AltName: Full=M RNA polyprotein; AltName: Full=Middle component RNA polyprotein; AltName: Full=P2; Contains: RecName: Full=VP58; Contains: RecName: Full=Movement protein; Short=MP; AltName: Full=43 kDa protein; Contains: RecName: Full=Large capsid protein; Short=LCP; AltName: Full=Coat protein VP40; AltName: Full=L subunit; AltName: Full=Large coat protein; Contains: RecName: Full=Small capsid protein precursor; AltName: Full=S subunit; Contains: RecName: Full=Mature small capsid protein; Short=SCP; AltName: Full=Coat protein VP22; AltName: Full=Small capsid protein, N-terminus part; AltName: Full=Small coat protein, N-terminus part; Contains: RecName: Full=Small capsid protein C-terminus part; AltName: Full=Small coat protein C-terminus part [Red clover mottle virus] Sequence ID: P13561.1 Length: 996 Range 1: 521 to 669 Score:52.0 bits(123), Expect:3e-07, Method:Compositional matrix adjust., Identities:33/151(22%), Positives:59/151(39%), Gaps:3/151(1%) Query 117 WNPAIEPYVEFVFKPFSCADWWNMHYLGSFKFAPVVVIQTLSKWLNAPKVDARISFAIYY 176 WNPA +F F P C W++ +L KF + + +S W P+ D ++ Y Sbjct 521 WNPACSKNCDFSFNPNPCGTAWSLEFLRRTKFH--LSVTCVSGWSAQPQTDIAMTMDWYV 578 Query 177 EPTVVLPKQIATLEHAPAFMFRKEVGTLAFKQG-ERVAYSFEVNLGKPQTDGKEVTSTFA 235 +P + +G L+F QG + + +G + Sbjct 579 SNKPCVPCIYNVGTPGQNVWVNRWMGKLSFPQGSQNQLKQMPLAIGGGAGAKNSILMNMT 638 Query 236 SSYCGLSQYMQSDVILDFTLMSSPMIGGTFS 266 +++ L +Y D++ + MSSP I T + Sbjct 639 NAFLSLWRYFHGDLVFEVQKMSSPFIKSTVT 669 >RecName: Full=RNA2 polyprotein; AltName: Full=Genome polyprotein M; AltName: Full=M RNA polyprotein; AltName: Full=Middle component RNA polyprotein; AltName: Full=P2; Contains: RecName: Full=VP58; AltName: Full=P58; Contains: RecName: Full=Movement protein; Short=MP; AltName: Full=48 kDa protein; Contains: RecName: Full=Large capsid protein; Short=LCP; AltName: Full=Coat protein VP37; AltName: Full=L subunit; AltName: Full=Large coat protein; Contains: RecName: Full=Small capsid protein precursor; AltName: Full=S subunit; Contains: RecName: Full=Mature small capsid protein; Short=SCP; AltName: Full=Coat protein VP23; AltName: Full=Small capsid protein, N-terminus part; AltName: Full=Small coat protein, N-terminus part; Contains: RecName: Full=Small capsid protein C-terminus part; AltName: Full=Small coat protein C-terminus part [Cowpea mosaic virus strain SB] Sequence ID: P03599.1 Length: 1046 Range 1: 527 to 818 Score:48.1 bits(113), Expect:4e-06, Method:Compositional matrix adjust., Identities:68/315(22%), Positives:120/315(38%), Gaps:37/315(11%) Query 69 IPGSLKVKINCQVAPT--CGIGLAV-SYVEGNESANLGSSLGRLLGIQHYKWNPAIEPYV 125 I G +KV ++ C + LA+ S V G S ++ + + WNP + Sbjct 527 ITGKIKVTATTNISDNSGCCLMLAINSGVRGKYSTDVYT----ICSQDSMTWNPGCKKNF 582 Query 126 EFVFKPFSCADWWNMHYLGSFKFAPVVVIQTLSKWLNAPKVD--ARISFAIYYEPTVVLP 183 F F P C D W+ + + V+ +S W +P D A++ ++I E Sbjct 583 SFTFNPNPCGDSWSAEMISRSRVRMTVIC--VSGWTLSPTTDVIAKLDWSIVNEKCEPTI 640 Query 184 KQIATLEHAPAFMFRKEVGTLAFKQG-----ERVAYSFEVNLGKPQTDGKEVTSTFASSY 238 +A ++ + +G L F QG R+ S G Q + +S+ Sbjct 641 YHLADCQN--WLPLNRWMGKLTFPQGVTSEVRRMPLSIGGGAGATQA----FLANMPNSW 694 Query 239 CGLSQYMQSDVILDFTLMSSPMIGGTFSIAYVAGAYIEKVGNMQILDSLPHIDFTFSSGS 298 + +Y + ++ + T MSSP I T + G + G +S PH F+ Sbjct 695 ISMWRYFRGELHFEVTKMSSPYIKATVTFLIAFGNLSDAFG---FYESFPHRIVQFAEVE 751 Query 299 KSTRSVRFPKEVFGVY--QALDRWDLDSARGDDVSGNFVLYQ--RDAVSSALEGELTFRI 354 + V +E + Q R L++ G LY D+ + + G+ F + Sbjct 752 EKCTLVFSQQEFVTAWSTQVNPRTTLEA------DGCPYLYAIIHDSTTGTISGD--FNL 803 Query 355 AARLSGDISFTGVSA 369 +L G F G+ + Sbjct 804 GVKLVGIKDFCGIGS 818