BLASTN 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= EG10893 rpoA RNA polymerase, alpha subunit (990 letters) Database: all 884 sequences; 12,243,887 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AE008857 AE006468 |AE008857| Salmonella typhimurium LT2, section... 1772 0.0 embl|AE006177|AE006177 Pasteurella multocida subsp. multocida st... 182 1e-45 AE012190 AE008922 |AE012190| Xanthomonas campestris pv. campestr... 88 5e-17 >AE008857 AE006468 |AE008857| Salmonella typhimurium LT2, section 161 of 220 of the complete genome. Length = 21370 Score = 1772 bits (894), Expect = 0.0 Identities = 966/990 (97%) Strand = Plus / Minus Query: 1 atgcagggttctgtgacagagtttctaaaaccgcgcctggttgatatcgagcaagtgagt 60 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 14132 atgcagggttctgtgacagagtttctaaaaccgcgcctggtagatatcgagcaagtgagt 14073 Query: 61 tcgacgcacgccaaggtgacccttgagcctttagagcgtggctttggccatactctgggt 120 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 14072 tcgacgcacgccaaggtgacccttgagcctttagagcgtggcttcggccatactctgggt 14013 Query: 121 aacgcactgcgccgtattctgctctcatcgatgccgggttgcgcggtgaccgaggttgag 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 14012 aacgcactgcgccgtattctgctctcatcgatgccgggttgcgcggtgaccgaggttgag 13953 Query: 181 attgatggtgtactacatgagtacagcaccaaagaaggcgttcaggaagatatcctggaa 240 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 13952 attgatggtgtactacatgagtacagcaccaaagaaggcgttcaggaagacatcctggaa 13893 Query: 241 atcctgctcaacctgaaagggctggcggtgagagttcagggcaaagatgaagttattctt 300 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 13892 atcctgctcaacctgaaagggctggcggtgagagttcagggtaaagatgaagttattctt 13833 Query: 301 accttgaataaatctggcattggccctgtgactgcagccgatatcacccacgacggtgat 360 |||||||||||||||||||||||||||||||||||||||||||||||||| || || ||| Sbjct: 13832 accttgaataaatctggcattggccctgtgactgcagccgatatcacccatgatggggat 13773 Query: 361 gtcgaaatcgtcaagccgcagcacgtgatctgccacctgaccgatgagaacgcgtctatt 420 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 13772 gtcgaaatcgtcaagccgcagcacgtgatctgccacctgaccgatgaaaacgcgtctatt 13713 Query: 421 agcatgcgtatcaaagttcagcgcggtcgtggttatgtgccggcttctacccgaattcat 480 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 13712 agtatgcgtatcaaagttcagcgcggtcgtggttatgtgccggcttctacccgaattcat 13653 Query: 481 tcggaagaagatgagcgcccaatcggccgtctgctggtcgacgcatgctacagccctgtg 540 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 13652 tcggaagaagatgagcgcccaatcggccgtctgctggtcgacgcctgctacagccctgta 13593 Query: 541 gagcgtattgcctacaatgttgaagcagcgcgtgtagaacagcgtaccgacctggacaag 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 13592 gagcgtattgcctacaatgttgaagcagcgcgtgtagaacagcgtaccgacctggacaag 13533 Query: 601 ctggtcatcgaaatggaaaccaacggcacaatcgatcctgaagaggcgattcgtcgtgcg 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 13532 ctggtcatcgaaatggaaaccaacggcacaatcgatcctgaagaggcgattcgtcgtgcg 13473 Query: 661 gcaaccattctggctgaacaactggaagctttcgttgacttacgtgatgtacgtcagcct 720 |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| || Sbjct: 13472 gcaaccatcctggctgaacaactggaagctttcgttgatttacgtgatgtacgtcaaccg 13413 Query: 721 gaagtgaaagaagagaaaccagagttcgatccgatcctgctgcgccctgttgacgatctg 780 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 13412 gaagtgaaagaagagaaaccagaattcgatccgatcctgctgcgccctgttgacgatctg 13353 Query: 781 gaattgactgtccgctctgctaactgccttaaagcagaagctatccactatatcggtgat 840 ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| Sbjct: 13352 gaattgactgtccgctctgctaactgcctcaaggcagaagctatccactatatcggtgat 13293 Query: 841 ctggtacagcgtaccgaggttgagctccttaaaacgcctaaccttggtaaaaaatctctt 900 |||||||||||||||||||||||||| ||||| ||||||||| | ||||||||||||||| Sbjct: 13292 ctggtacagcgtaccgaggttgagcttcttaagacgcctaacttgggtaaaaaatctctt 13233 Query: 901 actgagattaaagacgtgctggcttcccgtggactgtctctgggcatgcgcctggaaaac 960 || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 13232 accgagattaaagacgtgctggcttcccgtggactgtctctgggtatgcgcctggaaaac 13173 Query: 961 tggccaccggcaagcatcgctgacgagtaa 990 |||||||||||||||||||||||||||||| Sbjct: 13172 tggccaccggcaagcatcgctgacgagtaa 13143 >embl|AE006177|AE006177 Pasteurella multocida subsp. multocida str. Pm70 section 144 of 204 of the complete genome. Length = 14087 Score = 182 bits (92), Expect = 1e-45 Identities = 353/440 (80%) Strand = Plus / Minus Query: 544 cgtattgcctacaatgttgaagcagcgcgtgtagaacagcgtaccgacctggacaagctg 603 |||||||| ||||||||||||||||| ||||| ||||| ||||| ||| | || || | Sbjct: 1037 cgtattgcttacaatgttgaagcagcacgtgttgaacaacgtactgacttagataaatta 978 Query: 604 gtcatcgaaatggaaaccaacggcacaatcgatcctgaagaggcgattcgtcgtgcggca 663 || || || ||||||| |||||||| || ||||| ||||| || ||||||||||| ||| Sbjct: 977 gttattgagttggaaactaacggcactattgatccagaagaagcaattcgtcgtgcagca 918 Query: 664 accattctggctgaacaactggaagctttcgttgacttacgtgatgtacgtcagcctgaa 723 || ||| | || || ||||| || || |||||||| || |||||||| ||||| || ||| Sbjct: 917 acaattttagcagagcaactagatgcgttcgttgatttgcgtgatgttcgtcaaccagaa 858 Query: 724 gtgaaagaagagaaaccagagttcgatccgatcctgctgcgccctgttgacgatctggaa 783 || || ||||| |||||||| |||||||| || ||| |||| |||||||| || | || Sbjct: 857 gttaaggaagaaaaaccagaattcgatccaattctgttgcgtcctgttgatgacttagag 798 Query: 784 ttgactgtccgctctgctaactgccttaaagcagaagctatccactatatcggtgatctg 843 ||||| || || ||||||||||| | ||||||||| | || ||||||||||||||| | Sbjct: 797 ttgacagttcgttctgctaactgtttgaaagcagaaacaattcactatatcggtgattta 738 Query: 844 gtacagcgtaccgaggttgagctccttaaaacgcctaaccttggtaaaaaatctcttact 903 ||||||||||| || ||||| | | ||||| ||||| |||||||| ||||| |||||| Sbjct: 737 gtacagcgtactgaagttgaattattaaaaacacctaatcttggtaagaaatcacttact 678 Query: 904 gagattaaagacgtgctggcttcccgtggactgtctctgggcatgcgcctggaaaactgg 963 || ||||| ||||| || ||||| || || | || || || |||||||| ||||| ||| Sbjct: 677 gaaattaaggacgttcttgcttcacgcggcttatcactaggtatgcgccttgaaaattgg 618 Query: 964 ccaccggcaagcatcgctga 983 ||||| ||||| || ||||| Sbjct: 617 ccaccagcaagtattgctga 598 Score = 87.7 bits (44), Expect = 5e-17 Identities = 305/392 (77%) Strand = Plus / Minus Query: 1 atgcagggttctgtgacagagtttctaaaaccgcgcctggttgatatcgagcaagtgagt 60 |||||||||||||| ||||| ||| |||| || ||| | |||||||| |||||| | || Sbjct: 1580 atgcagggttctgttacagaatttttaaagccacgcttagttgatattgagcaaattagc 1521 Query: 61 tcgacgcacgccaaggtgacccttgagcctttagagcgtggctttggccatactctgggt 120 || || || || || |||| | | || || ||||||||||| || ||||| ||| | ||| Sbjct: 1520 tcaactcatgctaaagtgatcttagaaccgttagagcgtggattcggccacactttaggt 1461 Query: 121 aacgcactgcgccgtattctgctctcatcgatgccgggttgcgcggtgaccgaggttgag 180 || ||| |||| |||||||| || || || ||||| ||||| || || || || || || Sbjct: 1460 aatgcattgcgtcgtattcttctatcttcaatgccaggttgtgctgtaactgaagtagaa 1401 Query: 181 attgatggtgtactacatgagtacagcaccaaagaaggcgttcaggaagatatcctggaa 240 |||||||| ||| | || || ||||||| |||||||| |||||||||||||| || ||| Sbjct: 1400 attgatggcgtattgcacgaatacagcagtaaagaaggggttcaggaagatattcttgaa 1341 Query: 241 atcctgctcaacctgaaagggctggcggtgagagttcagggcaaagatgaagttattctt 300 | || || ||| | ||||| || ||||| | ||||||| |||||||| || |||| Sbjct: 1340 gtacttctaaacttaaaaggcctagcggttaaagttcagaataaagatgatgtatttctg 1281 Query: 301 accttgaataaatctggcattggccctgtgactgcagccgatatcacccacgacggtgat 360 || || || |||||||| ||||||||||| |||||| || |||||||| || || ||| Sbjct: 1280 acattaaacaaatctggaattggccctgttgttgcagctgacatcacccatgatggagat 1221 Query: 361 gtcgaaatcgtcaagccgcagcacgtgatctg 392 || || ||||| || || ||||||| ||||| Sbjct: 1220 gttgagatcgtaaatcctgagcacgttatctg 1189 >AE012190 AE008922 |AE012190| Xanthomonas campestris pv. campestris str. ATCC 33913, section 98 of 460 of the complete genome. Length = 11410 Score = 87.7 bits (44), Expect = 5e-17 Identities = 56/60 (93%) Strand = Plus / Plus Query: 577 gaacagcgtaccgacctggacaagctggtcatcgaaatggaaaccaacggcacaatcgat 636 ||||||||||||||||| ||||||||||||||||| || |||||||||||||| |||||| Sbjct: 2225 gaacagcgtaccgacctcgacaagctggtcatcgatatcgaaaccaacggcacgatcgat 2284 Database: all Posted date: Oct 3, 2007 10:49 PM Number of letters in database: 12,243,887 Number of sequences in database: 884 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 884 Number of Hits to DB: 133,578 Number of extensions: 7764 Number of successful extensions: 54 Number of sequences better than 1.0e-03: 3 Number of HSP's gapped: 53 Number of HSP's successfully gapped: 6 Length of query: 990 Length of database: 12,243,887 Length adjustment: 17 Effective length of query: 973 Effective length of database: 12,228,859 Effective search space: 11898679807 Effective search space used: 11898679807 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 15 (30.2 bits) S2: 22 (44.1 bits)