needle kith_ecoli.fasta kith_human.fasta ecoli_human.needle -gapopen 10.0 -gapextend 0.5
needle kith_ecoli.fasta kith_pyrko.fasta ecoli_pyrko.needle -gapopen 10.0 -gapextend 0.5
needle kith_human.fasta kith_pyrko.fasta human_pyrko.needle -gapopen 10.0 -gapextend 0.5