MAST - Motif Alignment and Search Tool
MAST version 4.3.0 (Release date: Sat Sep 26 01:51:56 PDT 2009)
For further information on how to interpret these results or to get
a copy of the MAST software please access http://meme.nbcr.net.
REFERENCE
If you use this program in your research, please cite:
Timothy L. Bailey and Michael Gribskov,
"Combining evidence using p-values: application to sequence homology
searches", Bioinformatics, 14(48-54), 1998.
DATABASE AND MOTIFS
DATABASE ./seed.fasta (peptide)
Last updated on Tue Apr 24 20:58:56 2012
Database contains 17 sequences, 4873 residues
MOTIFS ./memeout.txt (peptide)
MOTIF WIDTH BEST POSSIBLE MATCH
----- ----- -------------------
1 50 DRGEEYVFDRVDMEPTGDPFNSIMHLETNQPSKPFNPMINAGAITVTSMI
2 50 HEQIIPKHVAKICKTFMVTCGMYNASGEFAIHVGIPAKSGVSGGIMACVP
3 50 VYHSEWETAHRNRSMCYFMKQHGIIECDVEETLDVYFKQCSIEVTCKDIA
PAIRWISE MOTIF CORRELATIONS:
MOTIF 1 2
----- ----- -----
2 0.09
3 0.08 0.10
No overly similar pairs (correlation > 0.60) found.
Random model letter frequencies (from non-redundant database):
A 0.073 C 0.018 D 0.052 E 0.062 F 0.040 G 0.069 H 0.022 I 0.056 K 0.058
L 0.092 M 0.023 N 0.046 P 0.051 Q 0.041 R 0.052 S 0.074 T 0.059 V 0.064
W 0.013 Y 0.033
SECTION I: HIGH-SCORING SEQUENCES
- Each of the following 17 sequences has E-value less than 10.
- The E-value of a sequence is the expected number of sequences
in a random database of the same size that would match the motifs as
well as the sequence does and is equal to the combined p-value of the
sequence times the number of sequences in the database.
- The combined p-value of a sequence measures the strength of the
match of the sequence to all the motifs and is calculated by
- finding the score of the single best match of each motif
to the sequence (best matches may overlap),
- calculating the sequence p-value of each score,
- forming the product of the p-values,
- taking the p-value of the product.
- The sequence p-value of a score is defined as the
probability of a random sequence of the same length containing
some match with as good or better a score.
- The score for the match of a position in a sequence to a motif
is computed by by summing the appropriate entry from each column of
the position-dependent scoring matrix that represents the motif.
- Sequences shorter than one or more of the motifs are skipped.
- The table is sorted by increasing E-value.
| Links | Sequence Name | Description | E-value | Length
|
|---|
|
| GLSA2_BACHD/33-324
|
| 3.2e-140
| 292
|
|
| GLSA1_BACSU/32-327
|
| 6.2e-135
| 296
|
|
| GLSA1_BACHD/22-308
|
| 9.1e-110
| 287
|
|
| GLSA2_BACSU/23-309
|
| 4.8e-98
| 287
|
|
| GLSA_RHILO/28-313
|
| 3.5e-36
| 286
|
|
| GLSA_RHIEC/22-307
|
| 3.9e-35
| 286
|
|
| GLSA_STRCO/25-307
|
| 1.7e-34
| 283
|
|
| GLSA_PSEAE/19-302
|
| 4.7e-32
| 284
|
|
| GLSA_CAUCR/24-306
|
| 9.2e-32
| 283
|
|
| GLSA1_ECOLI/24-308
|
| 5.7e-31
| 285
|
|
| GLSA2_ECOLI/24-308
|
| 1.1e-30
| 285
|
|
| GLSA_VIBCH/22-306
|
| 2.6e-29
| 285
|
|
| GLSL_HUMAN/177-463
|
| 5.8e-29
| 287
|
|
| GLSK_HUMAN/244-530
|
| 6e-29
| 287
|
|
| GLSA2_YERPE/47-331
|
| 2.8e-28
| 285
|
|
| GLS2_CAEEL/174-460
|
| 2.9e-24
| 287
|
|
| GLS1_CAEEL/171-458
|
| 8.2e-22
| 288
|
SECTION II: MOTIF DIAGRAMS
- The ordering and spacing of all non-overlapping motif occurrences
are shown for each high-scoring sequence listed in Section I.
- A motif occurrence is defined as a position in the sequence whose
match to the motif has POSITION p-value less than 0.0001.
- The POSITION p-value of a match is the probability of
a single random subsequence of the length of the motif
scoring at least as well as the observed match.
- For each sequence, all motif occurrences are shown unless there
are overlaps. In that case, a motif occurrence is shown only if its
p-value is less than the product of the p-values of the other
(lower-numbered) motif occurrences that it overlaps.
- The table also shows the E-value of each sequence.
- Spacers and motif occurences are indicated by
- Spacers and motif occurences are indicated by
- Spacers and motif occurences are indicated by
- occurrence of motif `n' with p-value less than 0.0001.
- Sequences longer than 1000 are not shown to scale and are indicated by thicker lines.
| Links | Name | Expect | Motifs
|
|---|
|
| GLSA2_BACHD/33-324
| 3.2e-140
|
|
|
| GLSA1_BACSU/32-327
| 6.2e-135
|
|
|
| GLSA1_BACHD/22-308
| 9.1e-110
|
|
|
| GLSA2_BACSU/23-309
| 4.8e-98
|
|
|
| GLSA_RHILO/28-313
| 3.5e-36
|
|
|
| GLSA_RHIEC/22-307
| 3.9e-35
|
|
|
| GLSA_STRCO/25-307
| 1.7e-34
|
|
|
| GLSA_PSEAE/19-302
| 4.7e-32
|
|
|
| GLSA_CAUCR/24-306
| 9.2e-32
|
|
|
| GLSA1_ECOLI/24-308
| 5.7e-31
|
|
|
| GLSA2_ECOLI/24-308
| 1.1e-30
|
|
|
| GLSA_VIBCH/22-306
| 2.6e-29
|
|
|
| GLSL_HUMAN/177-463
| 5.8e-29
|
|
|
| GLSK_HUMAN/244-530
| 6e-29
|
|
|
| GLSA2_YERPE/47-331
| 2.8e-28
|
|
|
| GLS2_CAEEL/174-460
| 2.9e-24
|
|
|
| GLS1_CAEEL/171-458
| 8.2e-22
|
|
| SCALE
|
| | |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| 1 |
25 |
50 |
75 |
100 |
125 |
150 |
175 |
200 |
225 |
250 |
275 |
|
|---|
SECTION III: ANNOTATED SEQUENCES
- The positions and p-values of the non-overlapping motif occurrences
are shown above the actual sequence for each of the high-scoring
sequences from Section I.
- A motif occurrence is defined as a position in the sequence whose
match to the motif has POSITION p-value less than 0.0001 as
defined in Section II.
- For each sequence, the first line specifies the name of the sequence.
- The second (and possibly more) lines give a description of the
sequence.
- Following the description line(s) is a line giving the length,
combined p-value, and E-value of the sequence as defined in Section I.
- The next line reproduces the motif diagram from Section II.
- The entire sequence is printed on the following lines.
- Motif occurrences are indicated directly above their positions in the
sequence on lines showing
- the motif number of the occurrence,
- the position p-value of the occurrence,
- the best possible match to the motif, and
- columns whose match to the motif has a positive score (indicated
by a plus sign).
GLSA2_BACHD/33-324
LENGTH = 292 COMBINED P-VALUE = 1.87e-141 E-VALUE = 3.2e-140
DIAGRAM: 55-[1]-29-[3]-15-[2]-43
[1]
3.5e-52
DRGEEYVFDRVDMEPTGDPF
++++++++++++++++++++
1 GQCAQYIPALREANQTYLGLYVVHSNGIEIKSGDWQVPFTLQSISKIINFIAACLDRGITYVLDRVDVEPTGDPF
[3]
9.9e-49
NSIMHLETNQPSKPFNPMINAGAITVTSMI VYHSEWETAHRNRSMC
++++++++++++++++++++++++++++++ ++++++++++++++++
76 NSMVRLEMRKTGKPFNPMINAGAITVASLLSGKSPTEKLESVYSLVEKMLGRRASANEAVFHSEWQTAHRNRSLA
[2]
6.7e-54
YFMKQHGIIECDVEETLDVYFKQCSIEVTCKDIA HEQIIPKHVAKICKTFMVTCGMYNAS
++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++
151 YYLKDTGYLESEVDDALHVYFTLCAIEVATKDIAKIGLILANNGYDPLSHQQIFPKEVAKLTKALMLTCGMYNAS
GEFAIHVGIPAKSGVSGGIMACVP
++++++++++++++++++++++++
226 GTFAAHIGIPAKSGVSGGIMAAVPARGRSDEAMGIGIYGPAIDDFGNSVAGVALLKHLSHMWDLSIF
GLSA1_BACSU/32-327
LENGTH = 296 COMBINED P-VALUE = 3.67e-136 E-VALUE = 6.2e-135
DIAGRAM: 55-[1]-29-[3]-15-[2]-47
[1]
6.5e-50
DRGEEYVFDRVDMEPTGDPF
++++++++++++++++++++
1 GQSANYIPALGKVNDSQLGICVLEPDGTMIHAGDWNVSFTMQSISKVISFIAACMSRGIPYVLDRVDVEPTGDAF
[3]
1.2e-47
NSIMHLETNQPSKPFNPMINAGAITVTSMI VYHSEWETAHRNRSMC
++++++++++++++++++++++++++++++ ++++++++++++++++
76 NSIIRLEINKPGKPFNPMINAGALTIASILPGESAYEKLEFLYSVMETLIGKRPRIHEEVFRSEWETAHRNRALA
[2]
5.9e-52
YFMKQHGIIECDVEETLDVYFKQCSIEVTCKDIA HEQIIPKHVAKICKTFMVTCGMYNAS
++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++
151 YYLKETNFLEAEVEETLEVYLKQCAMESTTEDIALIGLILAHDGYHPIRHEQVIPKDVAKLAKALMLTCGMYNAS
GEFAIHVGIPAKSGVSGGIMACVP
++++++++++++++++++++++++
226 GKYAAFVGVPAKSGVSGGIMALVPPSARREQPFQSGCGIGIYGPAIDEYGNSLTGGMLLKHMAQEWELSIF
GLSA1_BACHD/22-308
LENGTH = 287 COMBINED P-VALUE = 5.37e-111 E-VALUE = 9.1e-110
DIAGRAM: 55-[1]-30-[3]-15-[2]-37
[1]
1.0e-40
DRGEEYVFDRVDMEPTGDPF
+ +++ ++++++++++++++
1 GTVASYIPALAKADVSTLGIAIYRGGDEQVIAGDADEKFTLQSISKVIALALALLDVGEEAVFSKVGMEPTGDPF
[3]
2.0e-36
NSIMHLETNQPSKPFNPMINAGAITVTSMI VYHSEWETAHRNRSM
+++ +++++ +++++++++++++++++ ++ +++++++++++++++
76 NSISKLETSVPSKPLNPMINAGALAVTNMIIGETTEQSLGRLLSFIHELTKNPTITYNLEVAQSEFDTAFLNRSL
[2]
5.5e-47
CYFMKQHGIIECDVEETLDVYFKQCSIEVTCKDIA HEQIIPKHVAKICKTFMVTCGMYNA
+++++++ ++++++ +++++++++++++ + +++ ++++ ++++++++++++++++++++
151 SYFLKQHGVIQADVEQLLDLYTKQCAIEMCCSDLARIGYVFANEGRDPDTGQRIVPLHVARIIKTFMVTCGMYNA
SGEFAIHVGIPAKSGVSGGIMACVP
++++++++++++++++++ ++++++
226 SGEFAIRVGIPAKSGVSGAILALVPNKYGIAVYSPALDEKGNSLAGIKLLETLSCREEWSIF
GLSA2_BACSU/23-309
LENGTH = 287 COMBINED P-VALUE = 2.80e-99 E-VALUE = 4.8e-98
DIAGRAM: 55-[1]-30-[3]-15-[2]-37
[1]
4.2e-39
DRGEEYVFDRVDMEPTGDPF
+ + +++++ ++ +++++++
1 GEVASYIPALAKADKHDLSVAIYYSNNVCLSAGDVEKTFTLQSISKVLSLALVLMEYGKDKVFSYVGQEPTGDPF
[3]
8.6e-28
NSIMHLETNQPSKPFNPMINAGAITVTSMI VYHSEWETAHRNRSM
++++++++++++++++++++++++ +++++ ++ ++ +++ ++++
76 NSIIKLETVNPSKPLNPMINAGALVVTSLIRGRTVKERLDYLLSFIRRLTNNQEITYCREVAESEYSTSMINRAM
[2]
2.0e-45
CYFMKQHGIIECDVEETLDVYFKQCSIEVTCKDIA HEQIIPKHVAKICKTFMVTCGMYNA
++++++ ++ + +++ ++++++++++++++ +++ +++++ +++++++++++++++++++
151 CYYMKQYGIFEDDVEAVMDLYTKQCAIEMNSLDLAKIGSVFALNGRHPETGEQVISKDVARICKTFMVTCGMYNA
SGEFAIHVGIPAKSGVSGGIMACVP
++++++++++++++++++++++ +
226 SGEFAIKVGIPAKSGVSGGIMGISPYDFGIGIFGPALDEKGNSIAGVKLLEIMSEMYRLSIF
GLSA_RHILO/28-313
LENGTH = 286 COMBINED P-VALUE = 2.05e-37 E-VALUE = 3.5e-36
DIAGRAM: 54-[1]-30-[3]-15-[2]-37
[1]
5.2e-08
DRGEEYVFDRVDMEPTGDPFN
+ + ++++ ++++ +++
1 GDVATYIPQLGKVDPRKFGIAAVTNDGRVLVAGDADQAFSIQSISKVFTLTLALGNVGDALWQRVGREPSGNPFN
[3]
4.9e-17
SIMHLETNQPSKPFNPMINAGAITVTSMI VYHSEWETAHRNRSMC
+++ ++ + ++ ++ +++ +++++ +++
76 SIVQLEHENGIPRNPFINAGAIVISDILLAGHQPREAIGEILRFIQFLADDDTIIIDREVAASERATGYRNFALA
[2]
1.4e-24
YFMKQHGIIECDVEETLDVYFKQCSIEVTCKDIA HEQIIPKHVAKICKTFMVTCGMYNAS
+++ + + + ++ +++ ++++ + + ++ + + ++ ++ + + +++++ ++ +
151 NYMKSFGNLHHAPELALGVYFHHCAIAMSCRQLAMAGRFLANGGKNPATGHSVVSAERARRIGAMMLTCGHYDGS
GEFAIHVGIPAKSGVSGGIMACVP
+ ++ +++++ ++++++++++ ++
226 GDFAFRVGIPGKSGVGGGILGIVPGVASLAVWSPGLNANGNSKLGSIALEKLARMMNWSIF
GLSA_RHIEC/22-307
LENGTH = 286 COMBINED P-VALUE = 2.30e-36 E-VALUE = 3.9e-35
DIAGRAM: 53-[1]-31-[3]-15-[2]-37
[1]
2.0e-06
DRGEEYVFDRVDMEPTGDPFNS
+ + + +
1 GKVADYIPELAKIDPRQFGMAIVTVDGQVFRVGDADIAFSIQSISKVFMLTLALGKVGEGLWKRVGREPSGSAFN
[3]
9.6e-19
IMHLETNQPSKPFNPMINAGAITVTSMI VYHSEWETAHRNRSMC
+ + + + ++ +++++++++ +++++ ++++++ +++
76 SIVQLEHESGIPRNPFINAGAIAVTDVVMAGHAPREAIGELLRFVRYLADDESITIDDKVARSETQTGYRNVALA
[2]
2.2e-23
YFMKQHGIIECDVEETLDVYFKQCSIEVTCKDIA HEQIIPKHVAKICKTFMVTCGMYNAS
++ ++ ++ ++ +++ ++++ + ++ ++ + + + ++ + +++++++ ++ +
151 NFMRAYRNLDHPVDHVLGVYFHQCALAMSCEQLARAGLFLAARGSNPMTGHSVVSPKRARRINALMLTCGHYDGS
GEFAIHVGIPAKSGVSGGIMACVP
+ ++ +++ + +++++++++++ +
226 GDFAYHVGLPGKSGVGGGIFAVAPGIASIAVWSPGLNKVGNSQLGAVALEMLAARTGWSVF
GLSA_STRCO/25-307
LENGTH = 283 COMBINED P-VALUE = 1.02e-35 E-VALUE = 1.7e-34
DIAGRAM: 54-[1]-28-[3]-14-[2]-37
[1]
6.1e-06
DRGEEYVFDRVDMEPTGDPFN
+ + ++ ++++ +++
1 GRPADYIPALAARDPRRFGMAVAELDGTVYGVGDWREPFSAQSLTKVFTLALDLAREGDALWEHVGREPSGNPFN
[3]
4.3e-17
SIMHLETNQPSKPFNPMINAGAITVTSMI VYHSEWETAHRNRSMCYF
+ + ++ + + + ++ ++ ++++ +++ +
76 SLVQLEYENGIPRNPFINAGALVVTDRLHTRTGDAAGELLAFLRAESGNPDLGHDEEVAASEAAHGDRNAALAHF
[2]
7.5e-25
MKQHGIIECDVEETLDVYFKQCSIEVTCKDIA HEQIIPKHVAKICKTFMVTCGMYNASGEF
+ + +++ + +++ +++++++ + +++ + +++ ++ + +++++++ +++ + +
151 MASYGNIDNPVPVLLDQYFRQCSVAASCADLALATGFLARHGIRADGTRLLSRSRAKQINAVMLTCGTYDAAGDF
AIHVGIPAKSGVSGGIMACVP
+ +++ + ++++++++ ++++
226 AHRVGLPGKSGVGGGIIAVVPGHCTLCVWGPGLDERGNSVAGVAALDRFTTLTGLSVF
GLSA_PSEAE/19-302
LENGTH = 284 COMBINED P-VALUE = 2.79e-33 E-VALUE = 4.7e-32
DIAGRAM: 54-[1]-28-[3]-15-[2]-37
[1]
2.7e-05
DRGEEYVFDRVDMEPTGDPFN
+ ++ + ++++ +++
1 GKVADYIPALAGVEPNQLGIAVYSRDGELFHAGDALRPFSIQSISKVFSLVQAIQHSGEDIWQRLGHEPSGQPFN
[3]
5.3e-16
SIMHLETNQPSKPFNPMINAGAITVTSMI VYHSEWETAHRNRSMCYF
+ + ++ + + +++++ + ++ + ++
76 SLVQLEFERGKPRNPFINAGALVICDINQSRFAAPAQSMRDFVRRLCGNPEVVSDSVVARSEYQHRSRNAAAAYL
[2]
4.3e-24
MKQHGIIECDVEETLDVYFKQCSIEVTCKDIA HEQIIPKHVAKICKTFMVTCGMYNASGE
++ + ++++ ++ ++ ++++ + + +++ +++++ ++ ++ + + + + + +++ +
151 MKSFGNFHNDVEAVLFSYFHHCALRMSCVDLARAFCFLADKGFCKHSGEQVLNERQTKQVNAIMATSGLYDEAGN
FAIHVGIPAKSGVSGGIMACVP
++ +++ + ++++++++ ++++
226 FAYRVGLPGKSGVGGGIIAVVPGRFTVCVWSPELNAAGNSLAGIAALEKLSERIGWSIF
GLSA_CAUCR/24-306
LENGTH = 283 COMBINED P-VALUE = 5.44e-33 E-VALUE = 9.2e-32
DIAGRAM: 54-[1]-27-[3]-15-[2]-37
[1]
6.0e-06
DRGEEYVFDRVDMEPTGDPFN
+ ++ +++ ++++ +++
1 GKPADYIPQLATVPGGKFGMAVRMVDGDEHVIGDADEGFSVQSITKVFALGLALNRLGDEIWTRVGKEPSGTPFN
[3]
4.0e-12
SIMHLETNQPSKPFNPMINAGAITVTSMI VYHSEWETAHRNRSMCYFM
++ + + + ++ +++ + +++++ +
76 HLSLLEAEQGVPRNPFINAGALAVTDVLMDVTRDPAALVRDFGGFLCGERLEIDPAVATSELAHAWQNRAIASLM
[2]
5.1e-27
KQHGIIECDVEETLDVYFKQCSIEVTCKDIA HEQIIPKHVAKICKTFMVTCGMYNASGEF
+ + + + + ++ +++++ + + ++ + +++++ ++ ++ ++++ +++ +++
151 RAKGTITHDPEAVVAAYCRQCALSMSCRQLARAFLPLAAGGFSPIAQETVFPERLTRRLNALLLTCGIYDSVGSF
AIHVGIPAKSGVSGGIMACVP
+ +++ ++++++++++ ++++
226 AYRVGLPAKSGVGGGIVAVVPGKATVAVWSPELDRFGTSVVGTAALEAFSQITNCSVL
GLSA1_ECOLI/24-308
LENGTH = 285 COMBINED P-VALUE = 3.35e-32 E-VALUE = 5.7e-31
DIAGRAM: 54-[1]-29-[3]-15-[2]-37
[1]
7.4e-09
DRGEEYVFDRVDMEPTGDPFN
+ + +
1 GQNADYIPFLANVPGQLAAVAIVTCDGNVYSAGDSDYRFALESISKVCTLALALEDVGPQAVQDKIGADPTGLPF
[3]
1.3e-16
SIMHLETNQPSKPFNPMINAGAITVTSMI VYHSEWETAHRNRSMCY
+ + ++++ ++++++++++++++ + +++ + + +++++
76 NSVIALELHGGKPLSPLVNAGAIATTSLINAENVEQRWQRILHIQQQLAGEQVALSDEVNQSEQTTNFHNRAIAW
[2]
8.1e-19
FMKQHGIIECDVEETLDVYFKQCSIEVTCKDIA HEQIIPKHVAKICKTFMVTCGMYNASG
+ +++ ++ ++ ++++++++ +++ ++ +++++ ++ + + + + + ++
151 LLYSAGYLYCDAMEACDVYTRQCSTLLNTIELATLGATLAAGGVNPLTHKRVLQADNVPYILAEMMMEGLYGRSG
EFAIHVGIPAKSGVSGGIMACVP
+ +++ + +++++++++++++
226 DWAYRVGLPGKSGVGGGILAVVPGVMGIAAFSPPLDEDGNSVRGQKMVASVAKQLGYNVF
GLSA2_ECOLI/24-308
LENGTH = 285 COMBINED P-VALUE = 6.64e-32 E-VALUE = 1.1e-30
DIAGRAM: 55-[1]-28-[3]-15-[2]-37
[1]
3.2e-07
DRGEEYVFDRVDMEPTGDPF
+++ ++++ +++ ++
1 GKVADYIPALATVDGSRLGIAICTVDGQLFQAGDAQERFSIQSISKVLSLVVAMRHYSEEEIWQRVGKDPSGSPF
[3]
2.6e-13
NSIMHLETNQPSKPFNPMINAGAITVTSMI VYHSEWETAHRNRSMCY
++ + +++ + + +++++++ + ++ +++
76 NSLVQLEMEQGIPRNPFINAGALVVCDMLQGRLSAPRQRMLEVVRGLSGVSDISYDTVVARSEFEHSARNAAIAW
[2]
1.9e-23
FMKQHGIIECDVEETLDVYFKQCSIEVTCKDIA HEQIIPKHVAKICKTFMVTCGMYNASG
++ + ++ ++ ++ +++ + + ++ ++++ + ++ + +++ + +++ +
151 LMKSFGNFHHDVTTVLQNYFHYCALKMSCVELARTFVFLANQGKAIHIDEPVVTPMQARQINALMATSGMYQNAG
EFAIHVGIPAKSGVSGGIMACVP
+++ +++ ++++++++++ + ++
226 EFAWRVGLPAKSGVGGGIVAIVPHEMAIAVWSPELDDAGNSLAGIAVLEQLTKQLGRSVY
GLSA_VIBCH/22-306
LENGTH = 285 COMBINED P-VALUE = 1.51e-30 E-VALUE = 2.6e-29
DIAGRAM: 55-[1]-28-[3]-15-[2]-37
[1]
4.5e-07
DRGEEYVFDRVDMEPTGDPF
++ ++++ ++++ ++
1 GIVADYIPALAKVPSDKLGIAVFTNQGEVITAGDAQEGFSIQSISKVLSLTLAMGLYQPDELWSRVGKEPSGQAF
[3]
3.0e-13
NSIMHLETNQPSKPFNPMINAGAITVTSMI VYHSEWETAHRNRSMCY
++ + +++ + + ++ ++ ++++ ++++
76 NSLIQLEMEQGIPRNPFINAGAIVVCDMLQSRLSAPRQRLLEFVRQLSGEPQIAYDKVVAASEMMHSDRNAAIAY
[2]
2.8e-22
FMKQHGIIECDVEETLDVYFKQCSIEVTCKDIA HEQIIPKHVAKICKTFMVTCGMYNASG
+ + +++ +++ ++ +++ + + ++ ++ +++ + + ++ +++ ++ +
151 LMRSFGNFHNEVIPVLHNYFHACALKMSCVELAKTFSYLANKGVSVVTGETVITPTQSKQTNALLATCGLYDGAG
EFAIHVGIPAKSGVSGGIMACVP
+++ +++ + ++++++++ ++++
226 EFAYRVGMPGKSGVGGGIIAVVPGEMTIAVWSPALDQSGNSLAGTRALELLAQRIGRSIF
GLSL_HUMAN/177-463
LENGTH = 287 COMBINED P-VALUE = 3.42e-30 E-VALUE = 5.8e-29
DIAGRAM: 52-[1]-31-[3]-17-[2]-37
[1]
7.0e-08
DRGEEYVFDRVDMEPTGDPFNSI
+ +
1 GKVAAYIPQLAKSNPDLWGVSLCTVDGQRHSVGHTKIPFCLQSCVKPLTYAISISTLGTDYVHKFVGKEPSGLRY
[3]
2.9e-11
MHLETNQPSKPFNPMINAGAITVTSMI VYHSEWETAHRNRSMCY
++ + + + +++++++++ +++++ ++++++++++++++++
76 NKLSLNEEGIPHNPMVNAGAIVVSSLIKMDCNKAEKFDFVLQYLNKMAGNEYMGFSNATFQSEKETGDRNYAIGY
[2]
4.2e-23
FMKQHGIIECDVEETLDVYFKQCSIEVTCKDIA HEQIIPKHVAKICKTFMVTCGMYNA
++++ + ++ + + + + + ++ ++ ++ + + +++ +++++
151 YLKEKKCFPKGVDMMAALDLYFQLCSVEVTCESGSVMAATLANGGICPITGESVLSAEAVRNTLSLMHSCGMYDF
SGEFAIHVGIPAKSGVSGGIMACVP
++ ++ +++ ++++ +++ ++ +++
226 SGQFAFHVGLPAKSAVSGAILLVVPNVMGMMCLSPPLDKLGNSHRGTSFCQKLVSLFNFHNY
GLSK_HUMAN/244-530
LENGTH = 287 COMBINED P-VALUE = 3.53e-30 E-VALUE = 6e-29
DIAGRAM: 52-[1]-31-[3]-17-[2]-37
[1]
1.6e-07
DRGEEYVFDRVDMEPTGDPFNSI
+
1 GKVADYIPQLAKFSPDLWGVSVCTVDGQRHSTGDTKVPFCLQSCVKPLKYAIAVNDLGTEYVHRYVGKEPSGLRF
[3]
9.4e-09
MHLETNQPSKPFNPMINAGAITVTSMI VYHSEWETAHRNRSMCY
++ + ++ +++++++++ +++++ ++++++ ++++ ++++
76 NKLFLNEDDKPHNPMVNAGAIVVTSLIKQGVNNAEKFDYVMQFLNKMAGNEYVGFSNATFQSERESGDRNFAIGY
[2]
5.9e-26
FMKQHGIIECDVEETLDVYFKQCSIEVTCKDIA HEQIIPKHVAKICKTFMVTCGMYNA
++++ + + + + + + + +++++ + + + +++ +++++
151 YLKEKKCFPEGTDMVGILDFYFQLCSIEVTCESASVMAATLANGGFCPITGERVLSPEAVRNTLSLMHSCGMYDF
SGEFAIHVGIPAKSGVSGGIMACVP
++ ++ +++ +++++++++++ +++
226 SGQFAFHVGLPAKSGVAGGILLVVPNVMGMMCWSPPLDKMGNSVKGIHFCHDLVSLCNFHNY
GLSA2_YERPE/47-331
LENGTH = 285 COMBINED P-VALUE = 1.64e-29 E-VALUE = 2.8e-28
DIAGRAM: 54-[1]-29-[3]-15-[2]-37
[1]
2.4e-07
DRGEEYVFDRVDMEPTGDPFN
+ + +
1 GVVSNVYPALERIPADLFGICMVGTNGKIHSAGDVDYEFTIMSVSKPFVFALVCQAIGAKTAREKLGVNSTGMAF
[3]
9.1e-20
SIMHLETNQPSKPFNPMINAGAITVTSMI VYHSEWETAHRNRSMCY
++ ++ ++++++++++++++ ++++ ++ ++++ ++
76 NSVTAIERASDGRTNPMVNSGAIATTSLVPGATSDEQWKFIYDGLCRFAGRELTLNEEVYQSACETNFRNRGIAN
[2]
2.0e-14
FMKQHGIIECDVEETLDVYFKQCSIEVTCKDIA HEQIIPKHVAKICKTFMVTCGMYNASG
+ + + + ++ ++ +++++++++++ + +++ +++ + ++ + +++++ + + ++
151 VLQGYGRLGCDPIIATDLYTRQCSLNVSARDLAVMGATLADGGVNPLTRERVVDNDICHYALAVMVTAGLYETSG
EFAIHVGIPAKSGVSGGIMACVP
++ + +++ ++++ + +
226 DWLYDIGLPGKSGIGGGIVTVSPGKGGLGTFAPLLDSAGNSIKGQLAARFLSRSLGMDMF
GLS2_CAEEL/174-460
LENGTH = 287 COMBINED P-VALUE = 1.69e-25 E-VALUE = 2.9e-24
DIAGRAM: 55-[1]-28-[3]-17-[2]-37
[1]
6.4e-06
DRGEEYVFDRVDMEPTGDPF
+ + ++ ++ ++++ +
1 GDLATYIPQLSRVAPDSWAMSVCTIDGQRKMWGDALKPFCLQSVSKPFTYALVHDDIGPEELHAHVGQEPSGRLF
[3]
1.5e-11
NSIMHLETNQPSKPFNPMINAGAITVTSMI VYHSEWETAHRNRSMCY
+ + +++ ++ ++ ++++++++++++ +
76 NDISLDHNKKPHNPLINAGAIVVASLLKNKLPLADRFDFMIHACRKFVGSGYIGFDNSVFLSERETADRNYALSY
[2]
6.1e-20
FMKQHGIIECDVEETLDVYFKQCSIEVTCKDIA HEQIIPKHVAKICKTFMVTCGMYNA
++ ++ ++++ ++ + + + ++++ + + + +++ +++++
151 YMREHKVFPKDLNLQDTLDLYFQICSIETNCDSLAVMAATLANGGVNPMNGERIVNNRACRDTLSLMYSCGMYDW
SGEFAIHVGIPAKSGVSGGIMACVP
++ ++ +++ ++++++++ + +
226 SGQFAFHVGLPAKSGVSGDMIIVIPNVMGIALYSPRLDKLGNTVRGVKFAEQLVQKYNFHNY
GLS1_CAEEL/171-458
LENGTH = 288 COMBINED P-VALUE = 4.82e-23 E-VALUE = 8.2e-22
DIAGRAM: 52-[1]-31-[3]-18-[2]-37
[1]
4.7e-07
DRGEEYVFDRVDMEPTGDPFNSI
+
1 GQVATYIPQLARQSPNLWAVSLCTVDGQRASFGDVKHPFCVQSVSKAFNYAIVASDLGADVVHSYVGQEPSGRLF
[3]
2.3e-11
MHLETNQPSKPFNPMINAGAITVTSMI VYHSEWETAHRNRSMCY
+++++ +++++++++ +++++ + +++ ++++++++ +
76 NEICLDSTNKPHNPMVNSGAIVITSLIKSKTNMADRFDFVLNQYRKIAGNEFIGFNNATFLSERATADRNYALSY
[2]
1.8e-16
FMKQHGIIECDVEETLDVYFKQCSIEVTCKDIA HEQIIPKHVAKICKTFMVTCGMYN
+++++ ++ +++ ++ + + + + + + + +++ +++++
151 FMKENRCFPKETESLTDALDFYFQLCSVEVTCESLAVMASTLANGGVCPITNETCVDPNPCRDVLSLMYSCGMYD
ASGEFAIHVGIPAKSGVSGGIMACVP
+++ + ++ ++++++++ +++
226 ASGQFSFNVGLPAKSGVSGAMIVVVPNVMGICLFSPPLDSLGNSCRGVAFCKKLVSTFNFHNY
Debugging Information
CPU: kodomo.fbb.msu.ru
Time 0.028001 secs.
mast ./memeout.txt -d ./seed.fasta -ev 10.000000 -mt 0.000100
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Links to Entrez database at NCBI
Links to sequence scores (section I)
Links to motif diagrams (section II)
Links to sequence/motif annotated alignments (section III)
This information