BLASTP 2.2.17 (Aug-26-2007)
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman
(1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
RID: MSN17WS1016
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
5,656,158 sequences; 1,954,257,355 total letters
Query=
Length=254
Score E
Sequences producing significant alignments: (Bits) Value
ref|YP_456691.1| DNA-directed RNA polymerase alpha chain [Ast... 266 9e-70
sp|Q6YQZ5.2|RPOA_ONYPE DNA-directed RNA polymerase subunit al... 265 1e-69
emb|CAJ17984.1| DNA-directed RNA polymerase alpha subunit [Ca... 254 3e-66
ref|YP_536296.1| DNA-directed RNA polymerase alpha chain [Lac... 206 1e-51
ref|YP_001124263.1| DNA-directed RNA polymerase alpha chain [... 205 2e-51
ref|YP_145986.1| DNA-directed RNA polymerase alpha subunit [G... 204 3e-51
ref|ZP_01189815.1| DNA-directed RNA polymerase, alpha subunit... 204 4e-51
ref|ZP_01187308.1| DNA-directed RNA polymerase, alpha subunit... 202 2e-50
ref|NP_830037.1| DNA-directed RNA polymerase alpha subunit [B... 202 2e-50
ref|YP_795770.1| DNA-directed RNA polymerase, alpha subunit/4... 201 5e-50
ALIGNMENTS
>ref|YP_456691.1| DNA-directed RNA polymerase alpha chain [Aster yellows witches'-broom
phytoplasma AYWB]
sp|Q2NIY1.1|RPOA_AYWBP DNA-directed RNA polymerase subunit alpha (RNAP subunit alpha)
(Transcriptase subunit alpha) (RNA polymerase subunit alpha)
gb|ABC65612.1| DNA-directed RNA polymerase alpha chain [Aster yellows witches'-broom
phytoplasma AYWB]
Length=330
Score = 266 bits (680), Expect = 9e-70
Identities = 134/253 (52%), Positives = 187/253 (73%), Gaps = 0/253 (0%)
Query 1 MGIVLNLKKVVFSVDSQDPQYEQQLELYAEGPAVITAGDFNLADDIEVVNKDQHIATLAE 60
M I+LNLKK+VF+VD + +E++LEL A+GP +TA F L ++++N D +I TL++
Sbjct 77 MTIILNLKKIVFAVDDESDDFEEKLELIAKGPQRLTAASFELPAGVKIINPDHYITTLSD 136
Query 61 GAKFNMTVTVRRGIGYVPADQNKQYSKYELNVIPIDSLYTPVERVIYSVEKTRGDLDELT 120
F+MTVT+++GIGYV A +NK + + ++ VI IDSL+TPV V Y VEK G+ DELT
Sbjct 137 DVCFHMTVTIKKGIGYVGAKENKVHIENQVGVIAIDSLFTPVVNVSYQVEKKLGNKDELT 196
Query 121 IEIETNGAILAKEALALASKMLVDHFQVLVDISEKASEFDFIRDIEEEPASKKSDTKIEQ 180
IEI TNGA+LAKEALA A+ +LVDHF VLV++S+K + +F+ + ++E + D +IEQ
Sbjct 197 IEITTNGALLAKEALATAASILVDHFNVLVELSQKPAHVEFVSESKKEAHNYVLDLEIEQ 256
Query 181 LDLSVRLFNSLKRSGITTVGELLKLSEEEVMRLRSLGRKSFKELKEKLAEHGLEFEHSTS 240
LDLSVRLFNSLKR+GI TV L+KLSE+EV++L+SLGRKSF+ELK+K E+GLEF
Sbjct 257 LDLSVRLFNSLKRAGIDTVASLVKLSEKEVVKLKSLGRKSFQELKDKFLEYGLEFNDYLK 316
Query 241 KEARFGFDSDEDK 253
+ + D+DK
Sbjct 317 EALHHSVEEDKDK 329
>sp|Q6YQZ5.2|RPOA_ONYPE DNA-directed RNA polymerase subunit alpha (RNAP subunit alpha)
(Transcriptase subunit alpha) (RNA polymerase subunit alpha)
Length=330
Score = 265 bits (678), Expect = 1e-69
Identities = 134/253 (52%), Positives = 186/253 (73%), Gaps = 0/253 (0%)
Query 1 MGIVLNLKKVVFSVDSQDPQYEQQLELYAEGPAVITAGDFNLADDIEVVNKDQHIATLAE 60
M I+LNLKK+VF+VD + +E++LEL A+GP +TA F L ++++N D +I TL++
Sbjct 77 MTIILNLKKIVFAVDDESDDFEEKLELIAKGPQRLTASSFELPAGVKIINPDHYITTLSD 136
Query 61 GAKFNMTVTVRRGIGYVPADQNKQYSKYELNVIPIDSLYTPVERVIYSVEKTRGDLDELT 120
F+MTVT+++GIGYV A NK + + ++ VI IDSL+TPV V Y VEK G+ DELT
Sbjct 137 DVCFHMTVTLKKGIGYVGAKDNKVHGENQVGVIAIDSLFTPVVNVSYQVEKKLGNKDELT 196
Query 121 IEIETNGAILAKEALALASKMLVDHFQVLVDISEKASEFDFIRDIEEEPASKKSDTKIEQ 180
IEI TNGA+LAKEALA A+ +LVDHF VLV++S+K + +F+ + ++E + D +IEQ
Sbjct 197 IEITTNGALLAKEALATAASILVDHFNVLVELSQKPAHVEFVSESKKEAHNSVLDLEIEQ 256
Query 181 LDLSVRLFNSLKRSGITTVGELLKLSEEEVMRLRSLGRKSFKELKEKLAEHGLEFEHSTS 240
LDLSVRLFNSLKR+GI TV L+KLSE+EV++L+SLGRKSF+ELK+K E+GLEF
Sbjct 257 LDLSVRLFNSLKRAGIDTVAALVKLSEKEVVKLKSLGRKSFQELKDKFLEYGLEFNDYLK 316
Query 241 KEARFGFDSDEDK 253
+ + D+DK
Sbjct 317 EVLHHSVEEDKDK 329
>emb|CAJ17984.1| DNA-directed RNA polymerase alpha subunit [Candidatus Phytoplasma
solani]
Length=318
Score = 254 bits (649), Expect = 3e-66
Identities = 133/253 (52%), Positives = 183/253 (72%), Gaps = 2/253 (0%)
Query 1 MGIVLNLKKVVFSVDSQDPQYEQQLELYAEGPAVITAGDFNLADDIEVVNKDQHIATLAE 60
M I+LNLKK+VF VD + +E+QLE+ GP +TA F L + ++N HI T+++
Sbjct 68 MTIILNLKKIVFKVDDESDDFEEQLEINLTGPKKVTAACFELPAGVTIINPKHHITTISD 127
Query 61 GAKFNMTVTVRRGIGYVPADQNKQYSKYELNVIPIDSLYTPVERVIYSVEKTRGDLDELT 120
F+MTVT+++GIGYV A NK +S+ ++ VI IDSL+TPV V Y V K G+ DELT
Sbjct 128 NINFHMTVTIKKGIGYVGAKDNKIHSENQIGVIAIDSLFTPVLDVAYQVGKKLGNKDELT 187
Query 121 IEIETNGAILAKEALALASKMLVDHFQVLVDISEKASEFDFIRDIEEEPASKKSDTKIEQ 180
I+I TNGA +AKEAL A+K+LV+HF V+V++S+K + +FI + +EE + D +IEQ
Sbjct 188 IQITTNGAAVAKEALVTAAKILVEHFNVIVELSQKVANIEFIPETKEEAHNYVLDLEIEQ 247
Query 181 LDLSVRLFNSLKRSGITTVGELLKLSEEEVMRLRSLGRKSFKELKEKLAEHGLEFEHSTS 240
LDLSVRLFNSLKR+GI TV L+KLSE+EV++L+SLGRKSF+ELK+K E+GLEF +
Sbjct 248 LDLSVRLFNSLKRAGINTVAALVKLSEKEVVKLKSLGRKSFQELKDKFVEYGLEF-NDYL 306
Query 241 KEARFGFDSDEDK 253
KEA ++EDK
Sbjct 307 KEA-LHHSTEEDK 318
>ref|YP_536296.1| DNA-directed RNA polymerase alpha chain [Lactobacillus salivarius
subsp. salivarius UCC118]
sp|Q1WSB6.1|RPOA_LACS1 DNA-directed RNA polymerase subunit alpha (RNAP subunit alpha)
(Transcriptase subunit alpha) (RNA polymerase subunit alpha)
gb|ABE00213.1| DNA-directed RNA polymerase alpha chain [Lactobacillus salivarius
subsp. salivarius UCC118]
Length=314
Score = 206 bits (523), Expect = 1e-51
Identities = 108/240 (45%), Positives = 161/240 (67%), Gaps = 8/240 (3%)
Query 3 IVLNLKKVVFSVDSQDPQYEQQLELYAEGPAVITAGDFNLADDIEVVNKDQHIATLAEGA 62
I+LNLKKV S++S+D Q LE+ GP +TAGD D+EV+N +Q+I T+A+GA
Sbjct 76 IILNLKKVALSMESED---SQALEINVTGPMEVTAGDIQSNSDVEVLNPEQYICTVADGA 132
Query 63 KFNMTVTVRRGIGYVPADQNKQYSK-YELNVIPIDSLYTPVERVIYSVEKTR----GDLD 117
+ ++ + +G GYV A+ NK + + V+PIDS+YTP+ERV Y VEKTR D D
Sbjct 133 ELHVRMNANKGRGYVSANDNKALADDMPIGVLPIDSIYTPIERVNYQVEKTRVGQKNDYD 192
Query 118 ELTIEIETNGAILAKEALALASKMLVDHFQVLVDISEKASEFDFIRDIEEEPASKKSDTK 177
+LT+++ TNG+I EA++L++K+L +H + VD++++A + + + EE K +
Sbjct 193 KLTLDVWTNGSITPSEAISLSAKILTEHLALFVDLTDEAKNAEIMVEKEETHKEKMLEMT 252
Query 178 IEQLDLSVRLFNSLKRSGITTVGELLKLSEEEVMRLRSLGRKSFKELKEKLAEHGLEFEH 237
IE+LDLSVR +N LKR+GI TV EL SE ++M++R+LGRKS E+K KLA+ GL H
Sbjct 253 IEELDLSVRSYNCLKRAGINTVQELTNKSEADMMKVRNLGRKSLDEVKAKLADLGLSLRH 312
>ref|YP_001124263.1| DNA-directed RNA polymerase alpha chain [Geobacillus thermodenitrificans
NG80-2]
sp|A4IJL4.1|RPOA_GEOTN DNA-directed RNA polymerase subunit alpha (RNAP subunit alpha)
(Transcriptase subunit alpha) (RNA polymerase subunit alpha)
gb|ABO65518.1| DNA-directed RNA polymerase alpha chain [Geobacillus thermodenitrificans
NG80-2]
Length=314
Score = 205 bits (522), Expect = 2e-51
Identities = 109/235 (46%), Positives = 161/235 (68%), Gaps = 8/235 (3%)
Query 3 IVLNLKKVVFSVDSQDPQYEQQLELYAEGPAVITAGDFNLADDIEVVNKDQHIATLAEGA 62
I+LN+KK+ + S + E+ LE+ +G V+TA D D+E++N D HIATLAEG
Sbjct 78 IILNVKKLALKIYSDE---EKTLEIDVQGEGVVTAADITHDSDVEILNPDLHIATLAEGG 134
Query 63 KFNMTVTVRRGIGYVPADQNKQYSKYELNVIPIDSLYTPVERVIYSVEKTR----GDLDE 118
+ M +T RRG GYVPA+ NK+ + + VIPIDS+YTPV RV Y VE TR D D+
Sbjct 135 RLRMRMTARRGRGYVPAEANKREDQ-PIGVIPIDSIYTPVSRVSYQVENTRVGQVTDYDK 193
Query 119 LTIEIETNGAILAKEALALASKMLVDHFQVLVDISEKASEFDFIRDIEEEPASKKSDTKI 178
LTI++ T+G+I KEA++L +K+L +H + V ++++A + + + E++ K + I
Sbjct 194 LTIDVWTDGSIGPKEAISLGAKILTEHLNIFVGLTDEAQNAEIMVEKEDDQKEKVLEMTI 253
Query 179 EQLDLSVRLFNSLKRSGITTVGELLKLSEEEVMRLRSLGRKSFKELKEKLAEHGL 233
E+LDLSVR +N LKR+GI TV EL + +EE++M++R+LGRKS +E+K KLAE GL
Sbjct 254 EELDLSVRSYNCLKRAGINTVQELTQKTEEDMMKVRNLGRKSLEEVKAKLAELGL 308
>ref|YP_145986.1| DNA-directed RNA polymerase alpha subunit [Geobacillus kaustophilus
HTA426]
sp|Q5L3R2.1|RPOA_GEOKA DNA-directed RNA polymerase subunit alpha (RNAP subunit alpha)
(Transcriptase subunit alpha) (RNA polymerase subunit alpha)
dbj|BAD74418.1| DNA-directed RNA polymerase alpha subunit [Geobacillus kaustophilus
HTA426]
Length=314
Score = 204 bits (520), Expect = 3e-51
Identities = 108/235 (45%), Positives = 161/235 (68%), Gaps = 8/235 (3%)
Query 3 IVLNLKKVVFSVDSQDPQYEQQLELYAEGPAVITAGDFNLADDIEVVNKDQHIATLAEGA 62
I+LN+KK+ + S + E+ LE+ +G V+TA D D+E++N D HIATLAEG
Sbjct 78 IILNIKKLALKIYSDE---EKTLEIDVQGEGVVTAADITHDSDVEILNPDLHIATLAEGG 134
Query 63 KFNMTVTVRRGIGYVPADQNKQYSKYELNVIPIDSLYTPVERVIYSVEKTR----GDLDE 118
+ M +T +RG GYVPA+ NK+ + + VIPIDS+YTPV RV Y VE TR D D+
Sbjct 135 RLRMRMTAKRGRGYVPAEANKREDQ-PIGVIPIDSIYTPVSRVSYQVENTRVGQVTDYDK 193
Query 119 LTIEIETNGAILAKEALALASKMLVDHFQVLVDISEKASEFDFIRDIEEEPASKKSDTKI 178
LTI++ T+G+I KEA++L +K+L +H + V ++++A + + + E++ K + I
Sbjct 194 LTIDVWTDGSIGPKEAISLGAKILTEHLNIFVGLTDEAQNAEIMVEKEDDQKEKVLEMTI 253
Query 179 EQLDLSVRLFNSLKRSGITTVGELLKLSEEEVMRLRSLGRKSFKELKEKLAEHGL 233
E+LDLSVR +N LKR+GI TV EL + +EE++M++R+LGRKS +E+K KLAE GL
Sbjct 254 EELDLSVRSYNCLKRAGINTVQELTQKTEEDMMKVRNLGRKSLEEVKAKLAELGL 308
>ref|ZP_01189815.1| DNA-directed RNA polymerase, alpha subunit [Halothermothrix orenii
H 168]
gb|EAR78603.1| DNA-directed RNA polymerase, alpha subunit [Halothermothrix orenii
H 168]
Length=314
Score = 204 bits (519), Expect = 4e-51
Identities = 104/238 (43%), Positives = 163/238 (68%), Gaps = 7/238 (2%)
Query 3 IVLNLKKVVFSVDSQDPQYEQQLELYAEGPAVITAGDFNLADDIEVVNKDQHIATLAEGA 62
++LNLK VV +D + ++ L EG +TAGDF + DIEV+N D HIATLAEG
Sbjct 76 VILNLKGVVLKYKGEDIE---KITLNCEGEGEVTAGDFKTSGDIEVINPDHHIATLAEGG 132
Query 63 KFNMTVTVRRGIGYVPADQNKQYSKYELNVIPIDSLYTPVERVIYSVEKTR----GDLDE 118
K + TV G GYV A++NK++ + +IPIDS ++P+ER + VE TR D D
Sbjct 133 KLQLEATVEFGRGYVTAEENKEHFDRVIGLIPIDSSFSPIERANFKVENTRVGQVTDYDR 192
Query 119 LTIEIETNGAILAKEALALASKMLVDHFQVLVDISEKASEFDFIRDIEEEPASKKSDTKI 178
L +E+ TNG+I ++A++LA+K++V+H ++ ++++++ ++ + + + EEE K DT I
Sbjct 193 LVLEVYTNGSISPEDAISLAAKIMVEHLELFLNLTDEVTDVEIMVEKEEEEKDKILDTTI 252
Query 179 EQLDLSVRLFNSLKRSGITTVGELLKLSEEEVMRLRSLGRKSFKELKEKLAEHGLEFE 236
E+LDLSVR N LKR+GI TVGEL+ +E+++M++R+LG+KS +E+KEKL E L+ +
Sbjct 253 EELDLSVRSSNCLKRAGINTVGELINKTEDDLMKVRNLGKKSLQEIKEKLNELDLKLK 310
>ref|ZP_01187308.1| DNA-directed RNA polymerase, alpha subunit [Bacillus weihenstephanensis
KBAB4]
gb|EAR73318.1| DNA-directed RNA polymerase, alpha subunit [Bacillus weihenstephanensis
KBAB4]
Length=314
Score = 202 bits (513), Expect = 2e-50
Identities = 106/235 (45%), Positives = 158/235 (67%), Gaps = 8/235 (3%)
Query 3 IVLNLKKVVFSVDSQDPQYEQQLELYAEGPAVITAGDFNLADDIEVVNKDQHIATLAEGA 62
++LNLKK+ + S + E+ LE+ +G ++TA D D+E++N D HIATLA+ A
Sbjct 78 MILNLKKLALKIYSDE---EKTLEIDVQGEGIVTAADITHDSDVEILNPDLHIATLAKNA 134
Query 63 KFNMTVTVRRGIGYVPADQNKQYSKYELNVIPIDSLYTPVERVIYSVEKTR----GDLDE 118
F M +T +RG GY PAD NK + + VIPIDS+YTPV RV Y VEKTR + D+
Sbjct 135 HFRMRLTAKRGRGYTPADANKSEDQ-PIGVIPIDSIYTPVSRVTYQVEKTRVGQVANYDK 193
Query 119 LTIEIETNGAILAKEALALASKMLVDHFQVLVDISEKASEFDFIRDIEEEPASKKSDTKI 178
LT+++ T+G+I KEA++L +K+L +H + V ++++A + + + EE+ K + I
Sbjct 194 LTLDVWTDGSIGPKEAISLGAKILTEHLNIFVGLTDEAQNAEIMVEKEEDQKEKVLEMTI 253
Query 179 EQLDLSVRLFNSLKRSGITTVGELLKLSEEEVMRLRSLGRKSFKELKEKLAEHGL 233
E+LDLSVR +N LKR+GI TV EL +EE++M++R+LGRKS +E+K KL E GL
Sbjct 254 EELDLSVRSYNCLKRAGINTVQELANKTEEDMMKVRNLGRKSLEEVKHKLEELGL 308
>ref|NP_830037.1| DNA-directed RNA polymerase alpha subunit [Bacillus cereus ATCC
14579]
ref|NP_842705.1| DNA-directed RNA polymerase alpha subunit [Bacillus anthracis
str. Ames]
ref|NP_976465.1| DNA-directed RNA polymerase alpha subunit [Bacillus cereus ATCC
10987]
ref|YP_016742.1| DNA-directed RNA polymerase alpha subunit [Bacillus anthracis
str. 'Ames Ancestor']
ref|ZP_00240900.1| DNA-directed RNA polymerase alpha chain [Bacillus cereus G9241]
ref|YP_026423.1| DNA-directed RNA polymerase alpha subunit [Bacillus anthracis
str. Sterne]
ref|YP_034488.1| DNA-directed RNA polymerase alpha subunit [Bacillus thuringiensis
serovar konkukian str. 97-27]
ref|YP_081747.1| DNA-directed RNA polymerase alpha subunit [Bacillus cereus E33L]
ref|ZP_00390542.1| COG0202: DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Bacillus anthracis str. A2012]
ref|YP_893056.1| DNA-directed RNA polymerase, alpha chain [Bacillus thuringiensis
str. Al Hakam]
sp|Q81J18.1|RPOA_BACCR DNA-directed RNA polymerase subunit alpha (RNAP subunit alpha)
(Transcriptase subunit alpha) (RNA polymerase subunit alpha)
sp|Q81VQ4.1|RPOA_BACAN DNA-directed RNA polymerase subunit alpha (RNAP subunit alpha)
(Transcriptase subunit alpha) (RNA polymerase subunit alpha)
sp|Q63H64.1|RPOA_BACCZ DNA-directed RNA polymerase subunit alpha (RNAP subunit alpha)
(Transcriptase subunit alpha) (RNA polymerase subunit alpha)
sp|Q6HPN2.1|RPOA_BACHK DNA-directed RNA polymerase subunit alpha (RNAP subunit alpha)
(Transcriptase subunit alpha) (RNA polymerase subunit alpha)
sp|Q73F69.1|RPOA_BACC1 DNA-directed RNA polymerase subunit alpha (RNAP subunit alpha)
(Transcriptase subunit alpha) (RNA polymerase subunit alpha)
sp|A0R8K6.1|RPOA_BACAH DNA-directed RNA polymerase subunit alpha (RNAP subunit alpha)
(Transcriptase subunit alpha) (RNA polymerase subunit alpha)
gb|AAP07238.1| DNA-directed RNA polymerase alpha chain [Bacillus cereus ATCC
14579]
gb|AAP24191.1| DNA-directed RNA polymerase, alpha subunit [Bacillus anthracis
str. Ames]
gb|AAS39073.1| DNA-directed RNA polymerase, alpha subunit [Bacillus cereus ATCC
10987]
gb|AAT29217.1| DNA-directed RNA polymerase, alpha subunit [Bacillus anthracis
str. 'Ames Ancestor']
gb|EAL11473.1| DNA-directed RNA polymerase alpha chain [Bacillus cereus G9241]
gb|AAT52474.1| DNA-directed RNA polymerase, alpha subunit [Bacillus anthracis
str. Sterne]
gb|AAT63939.1| DNA-directed RNA polymerase [Bacillus thuringiensis serovar konkukian
str. 97-27]
gb|AAU20102.1| DNA-directed RNA polymerase [Bacillus cereus E33L]
gb|ABK83549.1| DNA-directed RNA polymerase, alpha chain [Bacillus thuringiensis
str. Al Hakam]
Length=314
Score = 202 bits (513), Expect = 2e-50
Identities = 106/235 (45%), Positives = 159/235 (67%), Gaps = 8/235 (3%)
Query 3 IVLNLKKVVFSVDSQDPQYEQQLELYAEGPAVITAGDFNLADDIEVVNKDQHIATLAEGA 62
I+LNLKK+ + S++ E+ LE+ +G ++TA D D+E++N D HIATLA+ A
Sbjct 78 IILNLKKLALKIYSEE---EKTLEIDVQGEGIVTAADITHDSDVEILNPDLHIATLAKDA 134
Query 63 KFNMTVTVRRGIGYVPADQNKQYSKYELNVIPIDSLYTPVERVIYSVEKTR----GDLDE 118
F + +T +RG GY PAD NK + + VIPIDS+YTPV RV Y VEKTR + D+
Sbjct 135 HFRVRLTAKRGRGYTPADANKSEDQ-PIGVIPIDSIYTPVSRVTYQVEKTRVGQVANYDK 193
Query 119 LTIEIETNGAILAKEALALASKMLVDHFQVLVDISEKASEFDFIRDIEEEPASKKSDTKI 178
LT+++ T+G+I KEA++L +K+L +H + V ++++A + + + EE+ K + I
Sbjct 194 LTLDVWTDGSIGPKEAISLGAKILTEHLNIFVGLTDEAQNAEIMVEKEEDQKEKVLEMTI 253
Query 179 EQLDLSVRLFNSLKRSGITTVGELLKLSEEEVMRLRSLGRKSFKELKEKLAEHGL 233
E+LDLSVR +N LKR+GI TV EL +EE++M++R+LGRKS +E+K KL E GL
Sbjct 254 EELDLSVRSYNCLKRAGINTVQELANKTEEDMMKVRNLGRKSLEEVKHKLEELGL 308
>ref|YP_795770.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit [Lactobacillus
brevis ATCC 367]
sp|Q03PY3.1|RPOA_LACBA DNA-directed RNA polymerase subunit alpha (RNAP subunit alpha)
(Transcriptase subunit alpha) (RNA polymerase subunit alpha)
gb|ABJ64739.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit [Lactobacillus
brevis ATCC 367]
Length=316
Score = 201 bits (510), Expect = 5e-50
Identities = 105/236 (44%), Positives = 162/236 (68%), Gaps = 6/236 (2%)
Query 3 IVLNLKKVVFSVDSQDPQYEQQLELYAEGPAVITAGDFNLADDIEVVNKDQHIATLAEGA 62
I+LN+KK+ ++ D Q E+ +E+ +GPA ITAGD D++++N D +IAT+A+GA
Sbjct 76 IILNVKKIALKLNGSDDQ-EETMEINVKGPAQITAGDIVAGADVDILNPDLYIATVADGA 134
Query 63 KFNMTVTVRRGIGYVPADQNK-QYSKYELNVIPIDSLYTPVERVIYSVEKTR----GDLD 117
F+M +T +G GYV AD+NK + + + V+ +DS+YTP+ERV Y VE R D D
Sbjct 135 TFHMRMTADKGRGYVSADENKTRNTDMPIGVLAVDSIYTPIERVNYQVENARVGQRADYD 194
Query 118 ELTIEIETNGAILAKEALALASKMLVDHFQVLVDISEKASEFDFIRDIEEEPASKKSDTK 177
+LT+++ TNG+I EA+ALA+K+L +H + VD++++A + + + EE K +
Sbjct 195 KLTLDVWTNGSINPSEAIALAAKILTEHLAMFVDLTDEAKNAEIMVEKEETHKEKMLEMT 254
Query 178 IEQLDLSVRLFNSLKRSGITTVGELLKLSEEEVMRLRSLGRKSFKELKEKLAEHGL 233
IE+LDLSVR +N LKR+GI TV EL +E ++M++R+LGRKS +E+K KLA+ GL
Sbjct 255 IEELDLSVRSYNCLKRAGINTVQELNNKTEADMMKVRNLGRKSLEEVKAKLADLGL 310
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding
environmental samples from WGS projects
Posted date: Nov 26, 2007 5:53 PM
Number of letters in database: 1,954,257,355
Number of sequences in database: 5,656,158
Lambda K H
0.313 0.133 0.351
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 5656158
Number of Hits to DB: 81697501
Number of extensions: 3246834
Number of successful extensions: 9752
Number of sequences better than 10: 116
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 9720
Number of HSP's successfully gapped: 118
Length of query: 254
Length of database: 1954257355
Length adjustment: 130
Effective length of query: 124
Effective length of database: 1218956815
Effective search space: 151150645060
Effective search space used: 151150645060
T: 11
A: 40
X1: 16 (7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (20.8 bits)
S2: 76 (33.9 bits)