BLASTP 2.2.17 (Aug-26-2007)
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman
(1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
RID: MSNVP7ME016
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
5,656,158 sequences; 1,954,257,355 total letters
Query=
Length=119
Score E
Sequences producing significant alignments: (Bits) Value
ref|YP_173682.1| 50S ribosomal protein L17 [Bacillus clausii ... 146 3e-34
ref|YP_145987.1| 50S ribosomal protein L17 [Geobacillus kaust... 145 7e-34
sp|P07843|RL17_BACST 50S ribosomal protein L17 (BL21) 145 7e-34
ref|YP_001124264.1| LSU ribosomal protein L17P [Geobacillus t... 145 9e-34
ref|NP_241029.1| 50S ribosomal protein L17 [Bacillus halodura... 143 4e-33
ref|ZP_01697122.1| ribosomal protein L17 [Bacillus coagulans ... 142 5e-33
ref|YP_077429.1| 50S ribosomal protein L17 [Bacillus lichenif... 142 5e-33
ref|YP_140320.1| 50S ribosomal protein L17 [Streptococcus the... 142 6e-33
gb|EDP68728.1| 50S ribosomal protein L17 [Carnobacterium sp. AT7 142 8e-33
ref|YP_001451208.1| ribosomal protein L17 [Streptococcus gord... 141 1e-32
ALIGNMENTS
>ref|YP_173682.1| 50S ribosomal protein L17 [Bacillus clausii KSM-K16]
sp|Q5WLN4|RL17_BACSK 50S ribosomal protein L17
dbj|BAD62721.1| 50S ribosomal protein L17 [Bacillus clausii KSM-K16]
Length=120
Score = 146 bits (369), Expect = 3e-34
Identities = 76/117 (64%), Positives = 94/117 (80%), Gaps = 2/117 (1%)
Query 5 SRLRRTTDQREALLRDLVTDLIINDRITTTEAKAKSVQRVADKMVTLAKKGTLAARRQAA 64
++L RT+ QR+ALLRDLVTDLIIN+RI TTEAKAK ++ + +KM+TL K+G L ARRQAA
Sbjct 4 AKLGRTSSQRKALLRDLVTDLIINERIETTEAKAKELRPIVEKMITLGKRGDLHARRQAA 63
Query 65 ETVRLE--DAGEGKDALQKLFSVIAPRYNDRTGGYTRIIKTVPRRGDAAPMAIIEFI 119
VR E D G+DA+QKLF+ IAPR+ +R GGYTRI+K PRRGD APMAIIEF+
Sbjct 64 AFVRNEIADVESGQDAIQKLFADIAPRFAERQGGYTRILKVGPRRGDGAPMAIIEFV 120
>ref|YP_145987.1| 50S ribosomal protein L17 [Geobacillus kaustophilus HTA426]
sp|Q5L3R1|RL17_GEOKA 50S ribosomal protein L17
dbj|BAD74419.1| 50S ribosomal protein L17 [Geobacillus kaustophilus HTA426]
Length=120
Score = 145 bits (366), Expect = 7e-34
Identities = 77/116 (66%), Positives = 90/116 (77%), Gaps = 2/116 (1%)
Query 6 RLRRTTDQREALLRDLVTDLIINDRITTTEAKAKSVQRVADKMVTLAKKGTLAARRQAAE 65
+L RTT QR+ALLRDL TDLIIN+RI TTEA+AK ++ V +KM+TL K+G L ARRQAA
Sbjct 5 KLGRTTSQRKALLRDLATDLIINERIETTEARAKELRSVMEKMITLGKRGDLHARRQAAA 64
Query 66 TVRLEDAGE--GKDALQKLFSVIAPRYNDRTGGYTRIIKTVPRRGDAAPMAIIEFI 119
+R E A G+DALQKLFS IAPRY DR GGYTRI+K PRRGD APM IIE +
Sbjct 65 FIRKEVANSETGQDALQKLFSDIAPRYQDRQGGYTRIMKLGPRRGDGAPMVIIELV 120
>sp|P07843|RL17_BACST 50S ribosomal protein L17 (BL21)
Length=120
Score = 145 bits (366), Expect = 7e-34
Identities = 77/116 (66%), Positives = 90/116 (77%), Gaps = 2/116 (1%)
Query 6 RLRRTTDQREALLRDLVTDLIINDRITTTEAKAKSVQRVADKMVTLAKKGTLAARRQAAE 65
+L RTT QR+ALLRDL TDLIIN+RI TTEA+AK ++ V +KM+TL K+G L ARRQAA
Sbjct 5 KLGRTTSQRKALLRDLATDLIINERIETTEARAKELRAVIEKMITLGKRGDLHARRQAAA 64
Query 66 TVRLEDAGE--GKDALQKLFSVIAPRYNDRTGGYTRIIKTVPRRGDAAPMAIIEFI 119
+R E A G+DALQKLFS IAPRY DR GGYTRI+K PRRGD APM IIE +
Sbjct 65 FIRKEVANSETGQDALQKLFSDIAPRYQDRQGGYTRIMKLGPRRGDGAPMVIIELV 120
>ref|YP_001124264.1| LSU ribosomal protein L17P [Geobacillus thermodenitrificans NG80-2]
gb|ABO65519.1| LSU ribosomal protein L17P [Geobacillus thermodenitrificans NG80-2]
Length=120
Score = 145 bits (365), Expect = 9e-34
Identities = 77/116 (66%), Positives = 90/116 (77%), Gaps = 2/116 (1%)
Query 6 RLRRTTDQREALLRDLVTDLIINDRITTTEAKAKSVQRVADKMVTLAKKGTLAARRQAAE 65
+L RTT QR+ALLRDL TDLIIN+RI TTEA+AK ++ V +KM+TL K+G L ARRQAA
Sbjct 5 KLGRTTSQRKALLRDLATDLIINERIETTEARAKELRSVIEKMITLGKRGDLHARRQAAA 64
Query 66 TVRLEDAGE--GKDALQKLFSVIAPRYNDRTGGYTRIIKTVPRRGDAAPMAIIEFI 119
+R E A G+DALQKLFS IAPRY DR GGYTRI+K PRRGD APM IIE +
Sbjct 65 FIRNEVANSETGQDALQKLFSDIAPRYQDRQGGYTRIMKLGPRRGDGAPMVIIELV 120
>ref|NP_241029.1| 50S ribosomal protein L17 [Bacillus halodurans C-125]
sp|O50635|RL17_BACHD 50S ribosomal protein L17
dbj|BAA75299.1| rplQ homologue (identity of 84% to B. subtilis ) [Bacillus halodurans]
dbj|BAB03882.1| 50S ribosomal protein L17 [Bacillus halodurans C-125]
Length=120
Score = 143 bits (360), Expect = 4e-33
Identities = 75/117 (64%), Positives = 91/117 (77%), Gaps = 2/117 (1%)
Query 5 SRLRRTTDQREALLRDLVTDLIINDRITTTEAKAKSVQRVADKMVTLAKKGTLAARRQAA 64
++L R + R+ALLRDL TDLIIN+RI TTEAKAK ++ V +KM+TL K+G L ARRQAA
Sbjct 4 AKLGRDSAARKALLRDLATDLIINERIETTEAKAKELRSVVEKMITLGKRGDLHARRQAA 63
Query 65 ETVRLEDAGE--GKDALQKLFSVIAPRYNDRTGGYTRIIKTVPRRGDAAPMAIIEFI 119
+R E A E G+DA+QKLFS IAPRY DR GGYTR++K PRRGD APMAIIE +
Sbjct 64 AFIRREVADEETGQDAIQKLFSDIAPRYEDRQGGYTRVLKVGPRRGDGAPMAIIELV 120
>ref|ZP_01697122.1| ribosomal protein L17 [Bacillus coagulans 36D1]
gb|EAY43645.1| ribosomal protein L17 [Bacillus coagulans 36D1]
Length=138
Score = 142 bits (359), Expect = 5e-33
Identities = 77/116 (66%), Positives = 92/116 (79%), Gaps = 2/116 (1%)
Query 6 RLRRTTDQREALLRDLVTDLIINDRITTTEAKAKSVQRVADKMVTLAKKGTLAARRQAAE 65
+L RT+ QR+ALLRDL TDLIIN+RI TTEA+AK ++ V +K+VTL K+G L ARRQAA
Sbjct 5 KLGRTSAQRKALLRDLATDLIINERIETTEARAKELRSVVEKLVTLGKRGDLHARRQAAA 64
Query 66 TVRLEDAGE--GKDALQKLFSVIAPRYNDRTGGYTRIIKTVPRRGDAAPMAIIEFI 119
VR E A E +DA+QKLFSVIA RY DR GGYTRI+K PRRGD AP+AIIEF+
Sbjct 65 FVRHETADEETKQDAVQKLFSVIAERYADRRGGYTRILKVGPRRGDGAPVAIIEFV 120
>ref|YP_077429.1| 50S ribosomal protein L17 [Bacillus licheniformis ATCC 14580]
ref|YP_089829.1| 50S ribosomal protein L17 [Bacillus licheniformis ATCC 14580]
sp|Q65P78|RL17_BACLD 50S ribosomal protein L17
gb|AAU21791.1| ribosomal protein L17 (BL15) [Bacillus licheniformis ATCC 14580]
gb|AAU39136.1| RplQ [Bacillus licheniformis DSM 13]
Length=120
Score = 142 bits (359), Expect = 5e-33
Identities = 74/116 (63%), Positives = 92/116 (79%), Gaps = 2/116 (1%)
Query 6 RLRRTTDQREALLRDLVTDLIINDRITTTEAKAKSVQRVADKMVTLAKKGTLAARRQAAE 65
+L RT+ QR+A+LRDL TDLIIN+RI TTEA+AK ++ V +KM+TL K+G L ARRQAA
Sbjct 5 KLGRTSAQRKAMLRDLTTDLIINERIETTEARAKELRSVVEKMITLGKRGDLHARRQAAA 64
Query 66 TVRLE--DAGEGKDALQKLFSVIAPRYNDRTGGYTRIIKTVPRRGDAAPMAIIEFI 119
+R E DA + +DALQKLFS +APRY +R GGYTRI+K PRRGD APMAIIE +
Sbjct 65 YIRNEVADAEKNQDALQKLFSDVAPRYEERQGGYTRIMKLGPRRGDGAPMAIIELV 120
>ref|YP_140320.1| 50S ribosomal protein L17 [Streptococcus thermophilus LMG 18311]
ref|YP_142235.1| 50S ribosomal protein L17 [Streptococcus thermophilus CNRZ1066]
ref|YP_821190.1| Ribosomal protein L17 [Streptococcus thermophilus LMD-9]
gb|AAV61505.1| 50S ribosomal protein L17 [Streptococcus thermophilus LMG 18311]
gb|AAV63420.1| 50S ribosomal protein L17 [Streptococcus thermophilus CNRZ1066]
gb|ABJ66994.1| Ribosomal protein L17 [Streptococcus thermophilus LMD-9]
Length=128
Score = 142 bits (358), Expect = 6e-33
Identities = 76/124 (61%), Positives = 91/124 (73%), Gaps = 10/124 (8%)
Query 6 RLRRTTDQREALLRDLVTDLIINDRITTTEAKAKSVQRVADKMVTLAKKGTLAARRQAAE 65
+L RT+ QR+A+LRDL TDLIIN+ I TTEA+AK +++ +KM+TL K+G L ARRQAA
Sbjct 5 KLGRTSSQRKAVLRDLTTDLIINEAIVTTEARAKEIRKTVEKMITLGKRGDLHARRQAAA 64
Query 66 TVRLEDAGEGKD----------ALQKLFSVIAPRYNDRTGGYTRIIKTVPRRGDAAPMAI 115
VR E A E D ALQKLFS IAPRY +R GGYTRI+KT PRRGDAAPMAI
Sbjct 65 FVRNEIASESYDEATDKYTSTTALQKLFSEIAPRYTERNGGYTRILKTEPRRGDAAPMAI 124
Query 116 IEFI 119
IE +
Sbjct 125 IELV 128
>gb|EDP68728.1| 50S ribosomal protein L17 [Carnobacterium sp. AT7]
Length=126
Score = 142 bits (357), Expect = 8e-33
Identities = 77/122 (63%), Positives = 93/122 (76%), Gaps = 8/122 (6%)
Query 6 RLRRTTDQREALLRDLVTDLIINDRITTTEAKAKSVQRVADKMVTLAKKGTLAARRQAAE 65
+L RT+ QR+A+LRDL +DLIIN+RI TTEA+AK V++ +KM+TL KKG L ARRQAAE
Sbjct 5 KLGRTSSQRKAMLRDLTSDLIINERIVTTEARAKEVRKTTEKMITLGKKGDLHARRQAAE 64
Query 66 TVRLEDAG---EGKD-----ALQKLFSVIAPRYNDRTGGYTRIIKTVPRRGDAAPMAIIE 117
VR E A EG+D LQKLFS +APRY +R GGYTRI+KT PRRGDAAPM IIE
Sbjct 65 FVRNEVASVKEEGEDIVVQSVLQKLFSDVAPRYAERQGGYTRIMKTQPRRGDAAPMVIIE 124
Query 118 FI 119
+
Sbjct 125 LV 126
>ref|YP_001451208.1| ribosomal protein L17 [Streptococcus gordonii str. Challis substr.
CH1]
gb|ABV09349.1| ribosomal protein L17 [Streptococcus gordonii str. Challis substr.
CH1]
Length=128
Score = 141 bits (355), Expect = 1e-32
Identities = 75/124 (60%), Positives = 91/124 (73%), Gaps = 10/124 (8%)
Query 6 RLRRTTDQREALLRDLVTDLIINDRITTTEAKAKSVQRVADKMVTLAKKGTLAARRQAAE 65
+L RT+ QR+A+LRDL TDLIIN+ I TTEA+AK +++ +KM+TL K+G L ARRQAA
Sbjct 5 KLGRTSSQRKAMLRDLTTDLIINESIVTTEARAKEIRKTVEKMITLGKRGDLHARRQAAA 64
Query 66 TVRLEDAGEGKD----------ALQKLFSVIAPRYNDRTGGYTRIIKTVPRRGDAAPMAI 115
VR E A E D ALQKLFS +APRY +R GGYTRI+KT PRRGDAAPMAI
Sbjct 65 FVRNEIASENYDEATEKYTSTTALQKLFSELAPRYAERNGGYTRILKTEPRRGDAAPMAI 124
Query 116 IEFI 119
IE +
Sbjct 125 IELV 128
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding
environmental samples from WGS projects
Posted date: Nov 26, 2007 5:53 PM
Number of letters in database: 1,954,257,355
Number of sequences in database: 5,656,158
Lambda K H
0.320 0.133 0.356
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 5656158
Number of Hits to DB: 34633992
Number of extensions: 1153112
Number of successful extensions: 4022
Number of sequences better than 10: 66
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 4069
Number of HSP's successfully gapped: 67
Length of query: 119
Length of database: 1954257355
Length adjustment: 86
Effective length of query: 33
Effective length of database: 1467827767
Effective search space: 48438316311
Effective search space used: 48438316311
T: 11
A: 40
X1: 16 (7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 72 (32.3 bits)