########################################
# Program: needle
# Rundate: Sun 17 Feb 2008 20:56:37
# Commandline: needle
#    [-asequence] nucecoli.fasta
#    [-bsequence] nuchol.fasta
#    [-outfile] nucalig
# Align_format: srspair
# Report_file: nucalig
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: V00262
# 2: AAF95184
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1208
# Identity:     761/1208 (63.0%)
# Similarity:   761/1208 (63.0%)
# Gaps:         199/1208 (16.5%)
# Score: 2173.5
# 
#
#=======================================

V00262             1 atgaaaaatgttggttttatcggctggcgcggtatggtcggctccgttct     50
                     ||||.|   ||.|||||..|.||.|||||.||.||||||||.||.||.||
AAF95184           1 atgaga---gtaggtttagtaggttggcgtggcatggtcggttctgtcct     47

V00262            51 catgcaacgcatggttgaagagcgcgacttcgacgccattcgccctgtct    100
                     |||||||||||||||.|||||||||||.||.||....|||...||.||.|
AAF95184          48 catgcaacgcatggtagaagagcgcgattttgatctgattgaaccggttt     97

V00262           101 tcttttctacttctcagcttgg----ccaggctgcgccgtcttttggcgg    146
                     ||||...|||.||.||..||||    |    ||||.||...|||||  |.
AAF95184          98 tcttcagtacatcgcaaattggtgttc----ctgcccctaattttg--gt    141

V00262           147 aacca--ctggcacacttcaggatgcctttgatctggag-gcgctaaagg    193
                     ||..|  |.||||...|.||.|||||.||.||..|.||| || ||.|||.
AAF95184         142 aaagatgcaggcatgttgcacgatgcgttcgacattgagagc-ctcaagc    190

V00262           194 ccctcga---tatcattgtgacctgtcagggcggcgattataccaacgaa    240
                     ..||.||   |.|||||   |||||.||.|||||...||||||   ||||
AAF95184         191 agcttgatgctgtcatt---acctgccaaggcggtagttatac---cgaa    234

V00262           241 a---tctatccaaagcttcgtgaaagc-ggatggcaaggttactggattg    286
                     |   ||||.|||...||.||| .|||| ||.|||.|||||||||||||.|
AAF95184         235 aaggtctacccagcactgcgt-caagcgggttggaaaggttactggatcg    283

V00262           287 acgcagcatcgtctctgcgcatgaaagatgacgccatcatcattcttgac    336
                     |.||.||||||.|..||||.|||.|..|.||.||.|||||||.|||.||.
AAF95184         284 atgctgcatcgacattgcgtatggataaagaggcgatcatcactctggat    333

V00262           337 cccgtcaatcaggacgtcattaccgacggattaaata--------atgg-    377
                     |||||.||.|                    |||||.|        |||| 
AAF95184         334 cccgttaacc--------------------ttaaacaaattctgcatggt    363

V00262           378 ---catcagg--------acttttgttggcggtaactgtaccgtaagcct    416
                        |||||.|        ||.|||||.||.|||||||||||.||.|||.|
AAF95184         364 attcatcatggtacaaaaacctttgtcggtggtaactgtactgtgagctt    413

V00262           417 gatgttgatgtcgttgggtggtttattcgccaatgatc------ttgttg    460
                     ||||||.|||.|..|.|||||..|.|      ||||.|      |.||.|
AAF95184         414 gatgttaatggcacttggtggcctgt------atgagcgtggcttggtgg    457

V00262           461 attgggtgtccgttgcaacctaccaggccgcttccggcggtggtgcgcga    510
                     |.|||.||..||.|...||.|||||.||.||.|||||.|..||.||.|.|
AAF95184         458 aatggatgagcgctatgacttaccaagcagcatccggagcgggcgcacaa    507

V00262           511 catatgcgtgag-ttattaacccagatgggccatctgt-----atg--gc    552
                     .||||||||||| |.||| .|.||.|||||     |||     |||  ||
AAF95184         508 aatatgcgtgagctgatt-tcacaaatggg-----tgtgattaatgatgc    551

V00262           553 catgtggcagat--gaactcgcgaccccgtcct--ctgct--attctcga    596
                     |    |.|||.|  ||.||.|    ||..||||  |.|||  |||.|.||
AAF95184         552 c----gtcagctcagagcttg----ccaatcctgccagctccattttgga    593

V00262           597 tatcga-acgcaaagtcacaaccttaacccgtagcggtgagctgccggt-    644
                     |||.|| |.| |||||    ..||.||.||.| |||      |.|.||| 
AAF95184         594 tattgataag-aaagt----ggctgaaaccat-gcg------ttcgggtt    631

V00262           645 ----------ggataactttggcgtgccgctggcgggtagcctgattccg    684
                               .|||||||||||.||.||||||||.|||...|||||.||.
AAF95184         632 ctttcccaaccgataactttggggttccgctggcaggttcactgatccct    681

V00262           685 tggatcgac---aaacagctcgataacggtcagagccgcgaagagtggaa    731
                     |||||.|||   |||   |.||||||.||.||.|||...|||||||||||
AAF95184         682 tggattgacgtgaaa---cgcgataatggccaaagcaaagaagagtggaa    728

V00262           732 agggcaggcg--gaaaccaacaagatcct-------caacacatcttccg    772
                     |  ||.||.|  |||.|||||||.||.||       |||.| .|||.|.|
AAF95184         729 a--gcgggtgtagaagccaacaaaattctgggtttgcaaga-ttctccag    775

V00262           773 taattccggtagatggtttatgtgtgcgtgtcggggcattgcgctgccac    822
                     ||   |||.|.||||||...|||||||||.||||.|||.||||.||||||
AAF95184         776 ta---ccgattgatggtacgtgtgtgcgtatcggcgcaatgcgttgccac    822

V00262           823 agccaggcattcactattaaattgaa--aaaagatgtgtctattccgacc    870
                     ...||||||||.||.||.|||.||||  |.||.||...|||    |||  
AAF95184         823 tctcaggcattgaccatcaaactgaagcagaacattcctct----cga--    866

V00262           871 gtg-----gaagaactgctggctgcgcacaatccg--tgggcgaaagtcg    913
                      ||     ||.||..||.|.|||.|.||.||  ||  ||||..|||||..
AAF95184         867 -tgaaatcgaggagatgattgctactcataa--cgattgggtcaaagtga    913

V00262           914 ttccgaacgatcgggaaatcactatgcgtgagctaaccccagctgccgtt    963
                     |.|||||.||.||.||.||.||....|||||.||.||.||.|||...||.
AAF95184         914 tcccgaatgagcgtgacattaccgcacgtgaactgacacccgctaaagta    963

V00262           964 accggcacgctgaccacgccggtaggccgcctgcgtaagctgaat----a   1009
                     ||||||||||||.|....||.||.||||||.|.||.||    |||    |
AAF95184         964 accggcacgctgtctgtccccgtcggccgcttacgcaa----aatggcga   1009

V00262          1010 tgggacca-gagttcctgtca--gcctttaccgtgggcgaccagctgctg   1056
                     |||| |.| ||.||||  |||  |||||.||.||.|||||||||||..||
AAF95184        1010 tggg-cgatgatttcc--tcaatgccttcacggttggcgaccagctcttg   1056

V00262          1057 tggggggccgcggagccgctgcgtcggatgcttcgtcaac----tggc--   1100
                     ||||||||.||.||||||.||||.||.|.|||.|| ||.|    ||||  
AAF95184        1057 tggggggctgctgagccgttgcgccgtacgctgcg-catcattttggccg   1105

V00262          1101 -gtaa---   1104
                      |.||   
AAF95184        1106 agaaataa   1113


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