BLASTP 2.2.28+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: bacs.fasta 19,947 sequences; 5,842,681 total letters Query= sp|P50866|CLPX_BACSU ATP-dependent Clp protease ATP-binding subunit ClpX OS=Bacillus subtilis (strain 168) GN=clpX PE=2 SV=3 Length=420 Score E Sequences producing significant alignments: (Bits) Value sp|Q81LB9|CLPX_BACAN ATP-dependent Clp protease ATP-binding sub... 733 0.0 sp|Q5KWJ9|CLPX_GEOKA ATP-dependent Clp protease ATP-binding sub... 712 0.0 sp|Q8Y7K9|CLPX_LISMO ATP-dependent Clp protease ATP-binding sub... 683 0.0 sp|Q6GG31|CLPX_STAAR ATP-dependent Clp protease ATP-binding sub... 607 0.0 sp|B2UX12|CLPX_CLOBA ATP-dependent Clp protease ATP-binding sub... 593 0.0 sp|Q833M7|CLPX_ENTFA ATP-dependent Clp protease ATP-binding sub... 580 0.0 tr|B0S2N5|B0S2N5_FINM2 ATP-dependent Clp protease ATP-binding s... 560 0.0 tr|Q5FKR6|Q5FKR6_LACAC ATP-dependent Clp protease ATP-binding s... 548 0.0 sp|Q5FKD8|HSLU_LACAC ATP-dependent protease ATPase subunit HslU... 104 1e-24 sp|Q5L0N1|HSLU_GEOKA ATP-dependent protease ATPase subunit HslU... 101 8e-24 sp|Q834K4|HSLU_ENTFA ATP-dependent protease ATPase subunit HslU... 100 2e-23 sp|Q81WK6|HSLU_BACAN ATP-dependent protease ATPase subunit HslU... 97.8 2e-22 sp|Q8Y7J8|HSLU_LISMO ATP-dependent protease ATPase subunit HslU... 97.8 2e-22 sp|Q6GHI1|HSLU_STAAR ATP-dependent protease ATPase subunit HslU... 97.8 2e-22 tr|Q5L436|Q5L436_GEOKA ATP-dependent Clp protease ATPase subuni... 65.9 9e-12 tr|Q81VV9|Q81VV9_BACAN ATP-dependent Clp protease ATP-binding s... 60.5 5e-10 sp|Q6GDQ0|CLPL_STAAR ATP-dependent Clp protease ATP-binding sub... 55.1 2e-08 sp|Q6GJE4|CLPC_STAAR ATP-dependent Clp protease ATP-binding sub... 53.9 6e-08 tr|Q8Y8B1|Q8Y8B1_LISMO ATP-dependent protease OS=Listeria monoc... 52.4 2e-07 tr|Q8YAB6|Q8YAB6_LISMO Endopeptidase Clp ATP-binding chain C OS... 52.4 2e-07 tr|B0S3X9|B0S3X9_FINM2 ATP-dependent protease Clp ATP-binding s... 51.2 3e-07 tr|B0S0E3|B0S0E3_FINM2 ATP-dependent zinc metalloprotease FtsH ... 50.4 6e-07 tr|Q5FM98|Q5FM98_LACAC ATPase OS=Lactobacillus acidophilus (str... 47.0 9e-06 tr|Q5FHW6|Q5FHW6_LACAC ATP-dependent protease OS=Lactobacillus ... 45.8 2e-05 tr|Q82YZ7|Q82YZ7_ENTFA ATP-dependent Clp protease, ATP-binding ... 45.4 3e-05 tr|B0S3J0|B0S3J0_FINM2 Chaperone protein ClpB OS=Finegoldia mag... 45.1 3e-05 sp|B2V338|RUVB_CLOBA Holliday junction ATP-dependent DNA helica... 42.7 1e-04 sp|Q6GGZ9|Y1421_STAAR Uncharacterized protein SAR1421 OS=Staphy... 42.0 2e-04 tr|Q837W9|Q837W9_ENTFA ATP-dependent Clp protease, ATP-binding ... 42.4 2e-04 tr|Q5L3T1|Q5L3T1_GEOKA ATP-dependent zinc metalloprotease FtsH ... 42.0 2e-04 tr|Q81VX5|Q81VX5_BACAN ATP-dependent zinc metalloprotease FtsH ... 41.6 3e-04 tr|Q8YAC6|Q8YAC6_LISMO ATP-dependent zinc metalloprotease FtsH ... 41.6 4e-04 sp|Q8Y6Z8|RUVB_LISMO Holliday junction ATP-dependent DNA helica... 40.8 4e-04 tr|Q839B1|Q839B1_ENTFA ATP-dependent zinc metalloprotease FtsH ... 40.8 6e-04 tr|Q5FMA3|Q5FMA3_LACAC ATP-dependent zinc metalloprotease FtsH ... 40.8 6e-04 tr|Q5FLA7|Q5FLA7_LACAC ATP-dependent Clp protease, ATP-binding ... 40.8 6e-04 tr|B0S222|B0S222_FINM2 ATP-dependent zinc metalloprotease FtsH ... 40.8 7e-04 > sp|Q81LB9|CLPX_BACAN ATP-dependent Clp protease ATP-binding subunit ClpX OS=Bacillus anthracis GN=clpX PE=3 SV=1 Length=419 Score = 733 bits (1891), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/420 (87%), Positives = 393/420 (94%), Gaps = 1/420 (0%) Query 1 MFKFNEEKGQLKCSFCGKTQDQVRKLVAGPGVYICDECIELCTEIVEEELGTEEEVEFKD 60 MFKFN+EKGQLKCSFCGKTQ QVRKLVAGPGVYICDECIELCTEIV+EEL +EEVEFKD Sbjct 1 MFKFNDEKGQLKCSFCGKTQTQVRKLVAGPGVYICDECIELCTEIVQEELAKDEEVEFKD 60 Query 61 VPKPQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGS 120 VPKP EIREIL+EYVIGQD AKK+LAVAVYNHYKRINSNSK+DDVEL+KSNI+LIGPTGS Sbjct 61 VPKPVEIREILDEYVIGQDNAKKALAVAVYNHYKRINSNSKIDDVELAKSNIALIGPTGS 120 Query 121 GKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIYI 180 GKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIYI Sbjct 121 GKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIYI 180 Query 181 DEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNI 240 DEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNI Sbjct 181 DEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNI 240 Query 241 LFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLRFGLIPEFIG 300 LFICGGAFDGIE IIKRRLG+KVIGFG++ K AD+ ++ +LS VLPEDLLRFGLIPEFIG Sbjct 241 LFICGGAFDGIEPIIKRRLGEKVIGFGSEKKNADVNEKHVLSHVLPEDLLRFGLIPEFIG 300 Query 301 RLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAKKAIERK 360 RLPVIA+LE LDE+ALV ILTKPKNALVKQF+K+LELD+VELEFEE AL EIAKKAIERK Sbjct 301 RLPVIANLEPLDEDALVDILTKPKNALVKQFQKLLELDDVELEFEEGALIEIAKKAIERK 360 Query 361 TGARGLRSIIEGIMLDVMFELPSRDDIEKCVITGATVTHGEPPRLLLKDGTEVSQDKTSA 420 TGARGLRSIIEG+ML+VMFELPSR DIEKC++T TV P+L+L+DGT V KTSA Sbjct 361 TGARGLRSIIEGLMLEVMFELPSRKDIEKCILTKETVADNAAPKLVLQDGT-VLDTKTSA 419 > sp|Q5KWJ9|CLPX_GEOKA ATP-dependent Clp protease ATP-binding subunit ClpX OS=Geobacillus kaustophilus (strain HTA426) GN=clpX PE=3 SV=1 Length=421 Score = 712 bits (1837), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/421 (86%), Positives = 393/421 (93%), Gaps = 1/421 (0%) Query 1 MFKFNEEKGQLKCSFCGKTQDQVRKLVAGPGVYICDECIELCTEIVEEELGTEEEVEFKD 60 MFKFN+EKGQLKCSFCGKTQDQVRKLVAGPGVYICDECIELCTEIVEEELG EEE EFKD Sbjct 1 MFKFNDEKGQLKCSFCGKTQDQVRKLVAGPGVYICDECIELCTEIVEEELGNEEEFEFKD 60 Query 61 VPKPQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGS 120 VPKP EIREIL+EYVIGQD+AKKSLAVAVYNHYKRINS SK+DDVELSKSNI +IGPTGS Sbjct 61 VPKPLEIREILDEYVIGQDEAKKSLAVAVYNHYKRINSGSKIDDVELSKSNILMIGPTGS 120 Query 121 GKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIYI 180 GKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVE+AEKGIIYI Sbjct 121 GKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVERAEKGIIYI 180 Query 181 DEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNI 240 DEIDK+ARKSENPSITRDVSGEGVQQALLKILEGT+ASVPPQGGRKHPHQEFIQIDTTNI Sbjct 181 DEIDKIARKSENPSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPHQEFIQIDTTNI 240 Query 241 LFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLRFGLIPEFIG 300 LFICGGAFDGIE IIKRRLG+KVIGFGA+ D+++++LLSKVLPEDLL+FGLIPEFIG Sbjct 241 LFICGGAFDGIEPIIKRRLGKKVIGFGAEMNQTDVDEKNLLSKVLPEDLLKFGLIPEFIG 300 Query 301 RLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAKKAIERK 360 RLPVI +LE LDE+AL+ ILTKPKNA+VKQ++KMLELD VELEFEE AL EIAKKAIERK Sbjct 301 RLPVITTLEPLDEQALIDILTKPKNAIVKQYQKMLELDGVELEFEEAALREIAKKAIERK 360 Query 361 TGARGLRSIIEGIMLDVMFELPSRDDIEKCVITGATVTHGEPPRLLLKDGTEVS-QDKTS 419 TGARGLRSIIEGIMLDVMFELPSR+D++KC+IT TV +PP L+ DGT + + KTS Sbjct 361 TGARGLRSIIEGIMLDVMFELPSREDVQKCIITLDTVRGTKPPTLIRHDGTVIELERKTS 420 Query 420 A 420 A Sbjct 421 A 421 > sp|Q8Y7K9|CLPX_LISMO ATP-dependent Clp protease ATP-binding subunit ClpX OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=clpX PE=3 SV=1 Length=419 Score = 683 bits (1762), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/421 (82%), Positives = 381/421 (90%), Gaps = 3/421 (1%) Query 1 MFKFNEEKGQLKCSFCGKTQDQVRKLVAGPGVYICDECIELCTEIVEEELGTEEEVEFKD 60 MFKFN+EKGQLKCSFCGKTQDQVRKLVAGPGVYICDECIELC EI+EEELG E V+F + Sbjct 1 MFKFNDEKGQLKCSFCGKTQDQVRKLVAGPGVYICDECIELCNEIIEEELGISEFVDFGE 60 Query 61 VPKPQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSN-SKVDDVELSKSNISLIGPTG 119 VPKPQEIR IL++YVIGQ++AKK+LAVAVYNHYKRINSN +K D+VELSKSNI LIGPTG Sbjct 61 VPKPQEIRHILSDYVIGQERAKKALAVAVYNHYKRINSNETKEDEVELSKSNICLIGPTG 120 Query 120 SGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIY 179 SGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQ+ADYDVEKAEKGIIY Sbjct 121 SGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQSADYDVEKAEKGIIY 180 Query 180 IDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTN 239 IDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQE IQIDT N Sbjct 181 IDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQELIQIDTGN 240 Query 240 ILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLRFGLIPEFI 299 ILFI GGAFDGIEQI+K R+G+KVIGFG DN A + E LS+V+PEDLL+FGLIPEFI Sbjct 241 ILFIVGGAFDGIEQIVKNRMGEKVIGFGTDN-AKLKDDETYLSRVVPEDLLKFGLIPEFI 299 Query 300 GRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAKKAIER 359 GRLPVIA+LE+LDE ALV+ILT+PKNALVKQ+K+MLELD+VELEFE AL EIAK+AIER Sbjct 300 GRLPVIATLEQLDEAALVSILTEPKNALVKQYKRMLELDDVELEFEPTALIEIAKEAIER 359 Query 360 KTGARGLRSIIEGIMLDVMFELPSRDDIEKCVITGATVTHGEPPRLLLKDGTEVSQDKTS 419 KTGARGLRSIIE IML+VMFE+PSRDDI KC+IT E P+L L+DG+ + KTS Sbjct 360 KTGARGLRSIIEQIMLEVMFEIPSRDDITKCIITEKAARGEEEPQLQLEDGS-IIPIKTS 418 Query 420 A 420 A Sbjct 419 A 419 > sp|Q6GG31|CLPX_STAAR ATP-dependent Clp protease ATP-binding subunit ClpX OS=Staphylococcus aureus (strain MRSA252) GN=clpX PE=3 SV=1 Length=420 Score = 607 bits (1566), Expect = 0.0, Method: Compositional matrix adjust. Identities = 301/421 (71%), Positives = 356/421 (85%), Gaps = 2/421 (0%) Query 1 MFKFNEEKGQLKCSFCGKTQDQVRKLVAGPGVYICDECIELCTEIVEEELGTEEEVEFKD 60 MFKFNE++ LKCSFCGK QDQV+KLVAG GVYIC+ECIELC+EIVEEEL + Sbjct 1 MFKFNEDEENLKCSFCGKDQDQVKKLVAGSGVYICNECIELCSEIVEEELAQNTSEAITE 60 Query 61 VPKPQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINS-NSKVDDVELSKSNISLIGPTG 119 +P P+EI + LNEYVIGQ++AKKSLAVAVYNHYKRI K DDVEL KSNI+LIGPTG Sbjct 61 LPTPKEIMDHLNEYVIGQEKAKKSLAVAVYNHYKRIQQLGPKEDDVELQKSNIALIGPTG 120 Query 120 SGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIY 179 SGKTLLAQTLA+ LNVPFAIADATSLTEAGYVG+DVENILL+LIQAAD+D++KAEKGIIY Sbjct 121 SGKTLLAQTLAKTLNVPFAIADATSLTEAGYVGDDVENILLRLIQAADFDIDKAEKGIIY 180 Query 180 IDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTN 239 +DEIDK+ARKSEN SITRDVSGEGVQQALLKILEGT ASVPPQGGRKHP+QE IQIDTTN Sbjct 181 VDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPNQEMIQIDTTN 240 Query 240 ILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLRFGLIPEFI 299 ILFI GGAFDGIE++IKRRLG+KVIGF + N+A +++ LL+++ PEDL +GLIPEFI Sbjct 241 ILFILGGAFDGIEEVIKRRLGEKVIGFSS-NEADKYDEQALLAQIRPEDLQAYGLIPEFI 299 Query 300 GRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAKKAIER 359 GR+P++A+LE LD AL ILT+PKNALVKQ+ KMLELD+V+LEF EEALS I++KAIER Sbjct 300 GRVPIVANLETLDVTALKNILTQPKNALVKQYTKMLELDDVDLEFTEEALSAISEKAIER 359 Query 360 KTGARGLRSIIEGIMLDVMFELPSRDDIEKCVITGATVTHGEPPRLLLKDGTEVSQDKTS 419 KTGARGLRSIIE ++D+MF++PS +++ K VIT T+ P L +G ++ KTS Sbjct 360 KTGARGLRSIIEESLIDIMFDVPSNENVTKVVITAQTINEETEPELYDAEGNLINNSKTS 419 Query 420 A 420 A Sbjct 420 A 420 > sp|B2UX12|CLPX_CLOBA ATP-dependent Clp protease ATP-binding subunit ClpX OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=clpX PE=3 SV=1 Length=429 Score = 593 bits (1530), Expect = 0.0, Method: Compositional matrix adjust. Identities = 292/409 (71%), Positives = 356/409 (87%), Gaps = 8/409 (2%) Query 1 MFKFNEEKGQLKCSFCGKTQDQVRKLVAGPGVYICDECIELCTEIVEEELGTEEEVEF-- 58 M K++E+K QLKCSFCGKTQDQV++L+AGPGVYICDECI+LC+EI+ +E EE VEF Sbjct 1 MAKYDEKK-QLKCSFCGKTQDQVKRLIAGPGVYICDECIDLCSEIIADEF--EETVEFDT 57 Query 59 KDVPKPQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPT 118 K VPKP EI++ L+ YVIGQ++AKKSL+VAVYNHYKRIN+N + DVELSKSNI L+GPT Sbjct 58 KSVPKPNEIKQYLDSYVIGQERAKKSLSVAVYNHYKRINTNKQDTDVELSKSNILLLGPT 117 Query 119 GSGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGII 178 GSGKTLLAQTLA++LNVPFAIADAT+LTEAGYVGEDVENILLKLIQ ADYDVE+AE+GII Sbjct 118 GSGKTLLAQTLAKVLNVPFAIADATTLTEAGYVGEDVENILLKLIQNADYDVERAERGII 177 Query 179 YIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTT 238 YIDEIDK+ARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI+T+ Sbjct 178 YIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQINTS 237 Query 239 NILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKE--DLLSKVLPEDLLRFGLIP 296 NILFICGGAFDG+++II+ R + +GFGA+ + EK+ LL +++P DLL+FGLIP Sbjct 238 NILFICGGAFDGVDKIIENRTRKSSMGFGAEIQGKH-EKDIGKLLKEIMPGDLLKFGLIP 296 Query 297 EFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAKKA 356 EF+GRLP++ +LE LD++AL+ ILTKPKNALVKQ+KK+ ELD+VELEF EAL+ IA++A Sbjct 297 EFVGRLPILVTLESLDKDALINILTKPKNALVKQYKKLFELDDVELEFNNEALTSIAEEA 356 Query 357 IERKTGARGLRSIIEGIMLDVMFELPSRDDIEKCVITGATVTHGEPPRL 405 IERKTGARGLR+IIE +M ++M+E+PS + I K +IT + E P++ Sbjct 357 IERKTGARGLRAIIEEMMTEIMYEIPSDEQITKVIITEECIKDKENPQV 405 > sp|Q833M7|CLPX_ENTFA ATP-dependent Clp protease ATP-binding subunit ClpX OS=Enterococcus faecalis (strain ATCC 700802 / V583) GN=clpX PE=3 SV=1 Length=417 Score = 580 bits (1496), Expect = 0.0, Method: Compositional matrix adjust. Identities = 289/396 (73%), Positives = 340/396 (86%), Gaps = 4/396 (1%) Query 1 MFKFNEEKGQLKCSFCGKTQDQVRKLVAGPGVYICDECIELCTEIVEEELGTEEEVEFKD 60 M+ + G ++CSFCGKTQ++V+K+VAGPGVYIC+ECI+LC EI++EE E E D Sbjct 1 MYDNTDNNGTVRCSFCGKTQEEVKKIVAGPGVYICNECIDLCKEIIDEEFYDEAVRELTD 60 Query 61 VPKPQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKV---DDVELSKSNISLIGP 117 VPKPQEI +LNEYVIGQ++AK++L+VAVYNHYKR+N + DDVEL KSNI LIGP Sbjct 61 VPKPQEILNVLNEYVIGQERAKRTLSVAVYNHYKRVNQSETAATQDDVELQKSNICLIGP 120 Query 118 TGSGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGI 177 TGSGKT LAQTLA+ LNVPFAIADATSLTEAGYVGEDVENILLKL+Q+ADY+VE+AEKGI Sbjct 121 TGSGKTFLAQTLAKTLNVPFAIADATSLTEAGYVGEDVENILLKLLQSADYNVERAEKGI 180 Query 178 IYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDT 237 IYIDEIDK+ARKSEN SITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDT Sbjct 181 IYIDEIDKIARKSENVSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDT 240 Query 238 TNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLRFGLIPE 297 TN+LFI GGAFDGIE I+K RLG+K IGFG N A + E+E ++ ++PEDLL+FGLIPE Sbjct 241 TNVLFIVGGAFDGIETIVKNRLGEKTIGFGKTNSALN-EEESIMQHIIPEDLLKFGLIPE 299 Query 298 FIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAKKAI 357 FIGRLPV+A+L+KL + LV ILT+PKNALVKQ++K+L LD+ +LEFE EAL IA KAI Sbjct 300 FIGRLPVMAALDKLTNDDLVRILTEPKNALVKQYQKLLSLDDTKLEFEPEALKAIAAKAI 359 Query 358 ERKTGARGLRSIIEGIMLDVMFELPSRDDIEKCVIT 393 ER TGARGLRSIIE IM+DVMF++PS + IEK +IT Sbjct 360 ERNTGARGLRSIIEEIMMDVMFDVPSDESIEKVIIT 395 > tr|B0S2N5|B0S2N5_FINM2 ATP-dependent Clp protease ATP-binding subunit ClpX OS=Finegoldia magna (strain ATCC 29328) GN=clpX PE=3 SV=1 Length=411 Score = 560 bits (1442), Expect = 0.0, Method: Compositional matrix adjust. Identities = 266/402 (66%), Positives = 343/402 (85%), Gaps = 2/402 (0%) Query 9 GQLKCSFCGKTQDQVRKLVAGPGVYICDECIELCTEIVEEELGTEEEVEFK-DVPKPQEI 67 Q KCSFCGK+QD+V+KL+AGPGV+ICDEC+ LC I+EEE + ++ + D+PKP EI Sbjct 6 NQYKCSFCGKSQDEVKKLIAGPGVFICDECVSLCNSIIEEEFKDVDNIQERIDLPKPIEI 65 Query 68 REILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKTLLAQ 127 +++L++YVI Q++ KK+LAVAVYNHYKRINSN +DVEL KSNI L+GPTGSGKTLLA+ Sbjct 66 KDVLDDYVIKQEEGKKALAVAVYNHYKRINSNLMNNDVELQKSNILLVGPTGSGKTLLAE 125 Query 128 TLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIYIDEIDKVA 187 TLA+IL+VPFAIADATSLTEAGYVGEDVEN++LKLIQAADYD+EKAE+GIIYIDEIDK+ Sbjct 126 TLAKILDVPFAIADATSLTEAGYVGEDVENVILKLIQAADYDIEKAEQGIIYIDEIDKIT 185 Query 188 RKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNILFICGGA 247 RKSENPSITRDVSGEGVQQALLKI+EGT+ +VPPQGGRKHP+QE+IQ+DT NILFI GGA Sbjct 186 RKSENPSITRDVSGEGVQQALLKIVEGTICNVPPQGGRKHPNQEYIQVDTRNILFIVGGA 245 Query 248 FDGIEQIIKRRLGQKVIGFGADNKAADLEK-EDLLSKVLPEDLLRFGLIPEFIGRLPVIA 306 F+G+E+II+RR K IGFGAD + +K +L PEDL++FGLIPEF+GR+PV+ Sbjct 246 FEGLEKIIERRTETKSIGFGADLGDNEHKKISELFKDFRPEDLIKFGLIPEFVGRIPVLV 305 Query 307 SLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAKKAIERKTGARGL 366 +L++LDE+AL+ IL +PKNA++KQ++++ ++D+VELEF+E+AL IAK A +RKTGARGL Sbjct 306 TLDELDEQALIRILLEPKNAVIKQYQELFKMDDVELEFDEDALKAIAKLAYDRKTGARGL 365 Query 367 RSIIEGIMLDVMFELPSRDDIEKCVITGATVTHGEPPRLLLK 408 R+IIE ++++MFELPSR DI K ++T +V G+ P+L+ K Sbjct 366 RTIIEKSLMNIMFELPSRQDISKVILTKESVLEGKDPKLVFK 407 > tr|Q5FKR6|Q5FKR6_LACAC ATP-dependent Clp protease ATP-binding subunit ClpX OS=Lactobacillus acidophilus (strain ATCC 700396 / NCK56 / N2 / NCFM) GN=clpX PE=3 SV=1 Length=420 Score = 548 bits (1411), Expect = 0.0, Method: Compositional matrix adjust. Identities = 259/404 (64%), Positives = 330/404 (82%), Gaps = 0/404 (0%) Query 10 QLKCSFCGKTQDQVRKLVAGPGVYICDECIELCTEIVEEELGTEEEVEFKDVPKPQEIRE 69 ++KC+FCGKTQDQV+K++AG GVYIC+EC++L +I+++EL + ++PKP EI++ Sbjct 10 EIKCAFCGKTQDQVKKMIAGNGVYICNECVDLAKKIIDDELRADSLKTASELPKPVEIKK 69 Query 70 ILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKTLLAQTL 129 L++YVIGQD+AKK L+VAVYNHYKRI+ EL KSNI++IGPTGSGKT LAQTL Sbjct 70 QLDQYVIGQDRAKKVLSVAVYNHYKRISQMDVDSSTELQKSNIAMIGPTGSGKTYLAQTL 129 Query 130 ARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIYIDEIDKVARK 189 ARILNVPFAIADAT+LTEAGYVGEDVENILLKL+Q ADYD+E+A++GIIYIDEIDK+++K Sbjct 130 ARILNVPFAIADATTLTEAGYVGEDVENILLKLLQNADYDLERAQRGIIYIDEIDKISKK 189 Query 190 SENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNILFICGGAFD 249 SEN SITRDVSGEGVQQ+LLKILEGT+ASVPPQGGRKHP QE I++DTTNILFI GGAFD Sbjct 190 SENVSITRDVSGEGVQQSLLKILEGTIASVPPQGGRKHPQQEMIKMDTTNILFIVGGAFD 249 Query 250 GIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLRFGLIPEFIGRLPVIASLE 309 GIEQI+K RLG+K IGFGA+N+ ++ +D + DL++FG+IPEFIGR+P+I +L+ Sbjct 250 GIEQIVKSRLGKKTIGFGAENEVNKVDADDWTRHLTTADLVKFGMIPEFIGRIPIITTLD 309 Query 310 KLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAKKAIERKTGARGLRSI 369 KLD + LV +LT+PKNALVKQ+KK+L LD VEL+F + AL IA AI+R GARGLR+I Sbjct 310 KLDNKDLVRVLTEPKNALVKQYKKLLSLDGVELKFTDGALKAIADLAIQRNMGARGLRTI 369 Query 370 IEGIMLDVMFELPSRDDIEKCVITGATVTHGEPPRLLLKDGTEV 413 IE ++D+M+E PS +DIE +T +T PR+ K+ EV Sbjct 370 IENSIMDIMYETPSEEDIESVEVTKDVITRHAQPRITRKNAEEV 413 > sp|Q5FKD8|HSLU_LACAC ATP-dependent protease ATPase subunit HslU OS=Lactobacillus acidophilus (strain ATCC 700396 / NCK56 / N2 / NCFM) GN=hslU PE=3 SV=1 Length=466 Score = 104 bits (259), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 58/142 (41%), Positives = 89/142 (63%), Gaps = 14/142 (10%) Query 64 PQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKT 123 P+EI +ILNEY+IGQD+AKKS+A+A+YN Y+R+ ++ E++ N+ + GPTG GKT Sbjct 6 PKEIVKILNEYIIGQDEAKKSVAIALYNRYRRMQLPKQMQR-EITPKNLLMAGPTGVGKT 64 Query 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIYIDEI 183 +A+ LA I+ PF +AT TE GYVG DVE+++ L+ A + ++E Sbjct 65 EIARRLATIVEAPFVKVEATKFTEVGYVGRDVESMVRDLVGEA-----------VRMEEK 113 Query 184 DKVARKSENPSITRDVSGEGVQ 205 D+ AR P T++ + E V+ Sbjct 114 DQFARVK--PQATKEANKELVR 133 Score = 90.5 bits (223), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 75/239 (31%), Positives = 119/239 (50%), Gaps = 66/239 (28%) Query 167 DYD------VEKAEK-GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASV 219 DYD +E+++ GII+IDEIDK+ + N + +VS EGVQ+ +L I+EG+ + Sbjct 258 DYDTIYQRAIERSQNNGIIFIDEIDKII--AGNKRNSGEVSREGVQRDILPIVEGSTVNT 315 Query 220 PPQGGRKHPHQEFIQIDTTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKED 279 ++ + T +ILFI GAF A++K +D Sbjct 316 -----------KYGPVSTDHILFIAAGAF-------------------AESKPSD----- 340 Query 280 LLSKVLPEDLLRFGLIPEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDN 339 LIPE GR P+ L L ++ V IL P+N+L+KQ+ +L+ D Sbjct 341 --------------LIPELQGRFPIRVELNALTKDDFVKILKDPQNSLLKQYIALLKADG 386 Query 340 VELEFEEEALSEIAKKAIE-----RKTGARGLRSIIEGIMLDVMFELPSRDDIEKCVIT 393 ++L F +EA+ +IA+ A + GAR L +I+E ++ DV++E P D+E IT Sbjct 387 IKLIFTQEAVDKIAEIAFDVNQGTDNIGARRLSTILEKLLEDVLYEGP---DMEMGEIT 442 > sp|Q5L0N1|HSLU_GEOKA ATP-dependent protease ATPase subunit HslU OS=Geobacillus kaustophilus (strain HTA426) GN=hslU PE=3 SV=1 Length=465 Score = 101 bits (252), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 78/225 (35%), Positives = 113/225 (50%), Gaps = 56/225 (25%) Query 174 EKGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFI 233 + GII+IDEIDK+AR S S + DVS EGVQ+ +L I+EG+ ++ Sbjct 270 QSGIIFIDEIDKIAR-SGAVSGSADVSREGVQRDILPIVEGSTVMT-----------KYG 317 Query 234 QIDTTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLRFG 293 + T +ILFI GAF ++K P DL Sbjct 318 PVKTDHILFIAAGAFH-------------------------------MAK--PSDL---- 340 Query 294 LIPEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIA 353 IPE GR P+ L KL + V IL +P NAL+KQ++ +L + + LEF ++A+ +IA Sbjct 341 -IPELQGRFPIRVELAKLSVDDFVRILVEPNNALIKQYQALLATEGISLEFSDDAIRKIA 399 Query 354 KKAIE-----RKTGARGLRSIIEGIMLDVMFELPSRDDIEKCVIT 393 + A E GAR L +I+E ++ D++FE P I+K VIT Sbjct 400 EVAFEVNQTTDNIGARRLHTILEKLLEDLLFEAPD-IGIDKVVIT 443 Score = 92.8 bits (229), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 44/103 (43%), Positives = 73/103 (71%), Gaps = 1/103 (1%) Query 64 PQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKT 123 P++I E L+++++GQ +AKK++A+A+ N Y+R + K+ D E+ NI +IGPTG GKT Sbjct 8 PRQIVEKLDQFIVGQKEAKKAVAIALRNRYRRSLLDEKLRD-EVMPKNILMIGPTGVGKT 66 Query 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166 +A+ LA+++ PF +AT TE GYVG DVE+++ L++ + Sbjct 67 EIARRLAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETS 109 > sp|Q834K4|HSLU_ENTFA ATP-dependent protease ATPase subunit HslU OS=Enterococcus faecalis (strain ATCC 700802 / V583) GN=hslU PE=3 SV=1 Length=467 Score = 100 bits (250), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 51/126 (40%), Positives = 82/126 (65%), Gaps = 1/126 (1%) Query 64 PQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKT 123 P+EI + L++Y++GQ AKKS+AVA+ N Y+R+ + +++ N+ +IGPTG GKT Sbjct 8 PKEIVKELDQYIVGQQAAKKSVAVALRNRYRRLQLEENMQQ-DITPKNLLMIGPTGVGKT 66 Query 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIYIDEI 183 +A+ LA+I+N PF +AT TE GYVG DVE+++ L++ A VEK + +Y + Sbjct 67 EIARRLAKIVNAPFVKVEATKFTEVGYVGRDVESMVRDLVENAIQIVEKQQYSRVYAQAL 126 Query 184 DKVARK 189 K ++ Sbjct 127 KKANQR 132 Score = 95.1 bits (235), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 72/212 (34%), Positives = 107/212 (50%), Gaps = 56/212 (26%) Query 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235 GII+IDEIDK+ KS+ S +VS EGVQ+ +L I+EG+ + ++ + Sbjct 275 GIIFIDEIDKITSKSQQNS--GEVSREGVQRDILPIVEGS-----------QVNTKYGPL 321 Query 236 DTTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLRFGLI 295 T +ILFI GAF LSK P DL I Sbjct 322 QTDHILFIASGAFH-------------------------------LSK--PSDL-----I 343 Query 296 PEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAKK 355 PE GR P+ L+ L + V+ILT+P NAL+KQ+ ++ +NV + F +EA+ +A Sbjct 344 PELQGRFPIRVELDDLTADDFVSILTEPNNALIKQYVALIGTENVSVIFTKEAIERLAHI 403 Query 356 A--IERKT---GARGLRSIIEGIMLDVMFELP 382 A + R T GAR L +I+E ++ D+++E P Sbjct 404 AYDVNRDTDNIGARRLHTILERLLEDLLYEAP 435 > sp|Q81WK6|HSLU_BACAN ATP-dependent protease ATPase subunit HslU OS=Bacillus anthracis GN=hslU PE=3 SV=1 Length=463 Score = 97.8 bits (242), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 81/230 (35%), Positives = 115/230 (50%), Gaps = 59/230 (26%) Query 170 VEKAEK-GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHP 228 V +AE+ GII+IDEIDK+A K N + DVS EGVQ+ +L I+EG+ +V + G Sbjct 265 VYRAEQLGIIFIDEIDKIAGKQSN---SVDVSREGVQRDILPIVEGS--NVATKYG---- 315 Query 229 HQEFIQIDTTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPED 288 + T ILF+ GAF +SK P D Sbjct 316 -----SVKTDYILFVAAGAFH-------------------------------MSK--PSD 337 Query 289 LLRFGLIPEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEA 348 L IPE GR P+ L KL + V IL +P NAL+KQ+ +L + +E+EF +EA Sbjct 338 L-----IPELQGRFPIRVELTKLSTDDFVKILIEPDNALIKQYMALLATEGIEIEFSDEA 392 Query 349 LSEIAKKAIE-----RKTGARGLRSIIEGIMLDVMFELPSRDDIEKCVIT 393 + +IA+ A + GAR L +I+E ++ D+ FE S +EK IT Sbjct 393 IRKIAEIAYQVNQDTDNIGARRLHTIMEKLLEDLSFE-ASEITLEKITIT 441 Score = 93.6 bits (231), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 45/103 (44%), Positives = 71/103 (69%), Gaps = 1/103 (1%) Query 64 PQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKT 123 P++I E L++Y+IGQ AKK++AVA+ N Y+R + D E++ NI +IGPTG GKT Sbjct 7 PRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRD-EIAPKNILMIGPTGVGKT 65 Query 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166 +A+ +A+++ PF +AT TE GYVG DVE+++ L++ + Sbjct 66 EVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETS 108 > sp|Q8Y7J8|HSLU_LISMO ATP-dependent protease ATPase subunit HslU OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=hslU PE=3 SV=1 Length=469 Score = 97.8 bits (242), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 86/261 (33%), Positives = 128/261 (49%), Gaps = 61/261 (23%) Query 161 KLIQA---ADYDVEKAEK-GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTV 216 KLI A A + +AE+ G+I+IDEIDK+A K + VS EGVQ+ +L I+EG+ Sbjct 258 KLIDADELAAEGIHRAEQMGMIFIDEIDKIASKEGGGNA--QVSREGVQRDILPIVEGSQ 315 Query 217 ASVPPQGGRKHPHQEFIQIDTTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLE 276 S ++ ++T ILFI GAF Sbjct 316 IST-----------KYGTVNTEYILFIAAGAFH--------------------------- 337 Query 277 KEDLLSKVLPEDLLRFGLIPEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLE 336 +SK P DL IPE GR P+ L+KL +E ILT+P NAL+KQ+K +L+ Sbjct 338 ----MSK--PSDL-----IPELQGRFPIRIELDKLTQEDFYKILTEPDNALIKQYKALLK 386 Query 337 LDNVELEFEEEALSEIAKKAIE-----RKTGARGLRSIIEGIMLDVMFELPSRDDIEKCV 391 + ++L F +EA+ IA+ A + GAR L +I+E ++ D++FE P ++E Sbjct 387 TEGIDLIFTKEAVERIAEIAFQVNQDSDNIGARRLHTILEKLLEDLLFEAPE-INMESIK 445 Query 392 ITGATVTHGEPPRLLLKDGTE 412 +T V P + KD T+ Sbjct 446 VTENYVNEKLAPIMQNKDLTQ 466 Score = 96.3 bits (238), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 47/103 (46%), Positives = 73/103 (71%), Gaps = 1/103 (1%) Query 64 PQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKT 123 P++I E L++Y+IGQ+ AKKS+AVA+ N Y+R + + D E+ NI +IGPTG GKT Sbjct 12 PKQIVEKLDQYIIGQNGAKKSVAVALRNRYRRQLMDESIRD-EIIPKNILMIGPTGVGKT 70 Query 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166 +A+ +A+I+ PF+ +AT TE GYVG DVE+++ L++ + Sbjct 71 EIARRIAKIVRAPFSKVEATKFTEVGYVGRDVESMVRDLVEVS 113 > sp|Q6GHI1|HSLU_STAAR ATP-dependent protease ATPase subunit HslU OS=Staphylococcus aureus (strain MRSA252) GN=hslU PE=3 SV=1 Length=467 Score = 97.8 bits (242), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 72/213 (34%), Positives = 108/213 (51%), Gaps = 56/213 (26%) Query 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235 GII+IDEIDKVA + N +DVS +GVQ+ +L ILEG+V ++ + Sbjct 275 GIIFIDEIDKVATNNHNSG--QDVSRQGVQRDILPILEGSVI-----------QTKYGTV 321 Query 236 DTTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLRFGLI 295 +T ++LFI GAF +SK P DL I Sbjct 322 NTEHMLFIGAGAFH-------------------------------VSK--PSDL-----I 343 Query 296 PEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAKK 355 PE GR P+ L+ L E V ILT+PK +L+KQ++ +L+ + V + F +EA++ +A+ Sbjct 344 PELQGRFPIRVELDSLAVEDFVRILTEPKLSLIKQYEALLQTEEVTVNFTDEAITRLAEI 403 Query 356 AIE-----RKTGARGLRSIIEGIMLDVMFELPS 383 A + GAR L +I+E ++ D+ FE PS Sbjct 404 AYQVNQDTDNIGARRLHTILEKMLEDLSFEAPS 436 Score = 93.6 bits (231), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 48/117 (41%), Positives = 77/117 (66%), Gaps = 5/117 (4%) Query 64 PQEIREILNEYVIGQDQAKKSLAVAVYNHYKR--INSNSKVDDVELSKSNISLIGPTGSG 121 P+EI LNEY++GQ+ AK+ +A+A+ N Y+R ++ SK E+S NI +IGPTG G Sbjct 10 PKEIVSKLNEYIVGQNDAKRKVAIALRNRYRRSLLDEESKQ---EISPKNILMIGPTGVG 66 Query 122 KTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGII 178 KT +A+ +A+++ PF +AT TE GYVG DVE+++ L+ + V+ +K ++ Sbjct 67 KTEIARRMAKVVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVSVRLVKAQKKSLV 123 > tr|Q5L436|Q5L436_GEOKA ATP-dependent Clp protease ATPase subunit OS=Geobacillus kaustophilus (strain HTA426) GN=GK0078 PE=3 SV=1 Length=810 Score = 65.9 bits (159), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 87/329 (26%), Positives = 150/329 (46%), Gaps = 64/329 (19%) Query 66 EIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKTLL 125 ++ EIL+ V+GQD+A K++A AV + + + D + + +GPTG GKT L Sbjct 501 KLEEILHSRVVGQDEAVKAVAKAVRR------ARAGLKDPKRPIGSFIFLGPTGVGKTEL 554 Query 126 AQTLA-----------RILNVPFAIADATSL---TEAGYVGEDVENILLKLIQAADYDVE 171 A+ LA RI + +TS + GYVG + L + ++ Y V Sbjct 555 ARALAEAMFGDEDALIRIDMSEYMEKHSTSRLIGSPPGYVGYEEGGQLTEKVRRKPYSV- 613 Query 172 KAEKGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQE 231 + +DE++K +P + LL++LE + GR + Sbjct 614 ------VLLDEMEKA-----HPDVF---------NILLQVLED--GRLTDSKGRTVDFRN 651 Query 232 FIQIDTTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLR 291 I I T+N+ GA +KR K +GF + + + +D+ SKV+ E L+ Sbjct 652 TIIIMTSNV-----GA-----DALKR---NKYVGFNIQD--GNQQYKDMKSKVMDE--LK 694 Query 292 FGLIPEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSE 351 PEF+ R+ I L+++ L I+ + LVK+ K+ +++LE E A+ + Sbjct 695 KAFRPEFLNRIDEIIVFHSLEKDHLKQIVRLMADTLVKRLKEQ----DIDLELTEAAIEK 750 Query 352 IAKKAIERKTGARGLRSIIEGIMLDVMFE 380 IA + + + GAR LR ++ + D + E Sbjct 751 IAAEGFDPEYGARPLRRALQKHVEDRLSE 779 > tr|Q81VV9|Q81VV9_BACAN ATP-dependent Clp protease ATP-binding subunit ClpC OS=Bacillus anthracis GN=clpC PE=3 SV=1 Length=811 Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 93/334 (28%), Positives = 150/334 (45%), Gaps = 64/334 (19%) Query 70 ILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKTLLAQTL 129 IL++ VIGQD+A ++A AV + + + D + + +GPTG GKT LA+ L Sbjct 506 ILHDRVIGQDEAVVAVAKAVRR------ARAGLKDPKRPIGSFIFLGPTGVGKTELARAL 559 Query 130 A-----------RILNVPFAIADATSL---TEAGYVGEDVENILLKLIQAADYDVEKAEK 175 A RI + +TS + GYVG + L + ++ Y V Sbjct 560 AESMFGDEDAMIRIDMSEYMEKHSTSRLVGSPPGYVGYEEGGQLTEKVRRKPYSV----- 614 Query 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235 + +DE++K +P + LL++LE + GR + I I Sbjct 615 --VLLDEVEKA-----HPDVF---------NILLQVLED--GRLTDSKGRTVDFRNTIVI 656 Query 236 DTTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLRFGLI 295 T+N+ GA + +KR K +GF +++ D D+ KV+ E L+ Sbjct 657 MTSNV-----GA-----EALKR---NKHLGFNVQDESRDYS--DMKGKVMDE--LKKAFR 699 Query 296 PEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAKK 355 PEF+ R+ I L+++ + I+T N LV + K+ +EL E A+S IA K Sbjct 700 PEFLNRIDEIIVFHMLEKKHIQEIVTLMVNQLVNRLKEQ----EIELHLTEGAISAIADK 755 Query 356 AIERKTGARGLRSIIEGIMLDVMFELPSRDDIEK 389 +R+ GAR LR I+ + D + E + IEK Sbjct 756 GFDREYGARPLRRAIQKHVEDRLSEELLKGAIEK 789 > sp|Q6GDQ0|CLPL_STAAR ATP-dependent Clp protease ATP-binding subunit ClpL OS=Staphylococcus aureus (strain MRSA252) GN=clpL PE=3 SV=1 Length=701 Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 81/333 (24%), Positives = 142/333 (43%), Gaps = 83/333 (25%) Query 55 EVEFKDVPKPQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISL 114 +++ D+ + + I L +IGQD+A + ++ A+ + + DD + Sbjct 402 QMDANDIERLKNISSRLRSKIIGQDKAVEMVSRAIRRN------RAGFDDGNRPIGSFLF 455 Query 115 IGPTGSGKTLLAQTLA--------RILNVPFA-IADATSL-----TEAGYVG-EDVENIL 159 +GPTG GKT LA+ LA ++ + + +D T++ T AGYVG +D N L Sbjct 456 VGPTGVGKTELAKQLAIDLFGNKEALIRLDMSEYSDTTAVSKMIGTTAGYVGYDDNSNTL 515 Query 160 LKLIQAADYDVEKAEKGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKIL-EGTVAS 218 + ++ Y V I DEI+K NP I LL+++ +G + Sbjct 516 TEKVRRNPYSV-------ILFDEIEKA-----NPQIL---------TLLLQVMDDGNLTD 554 Query 219 VPPQGGRKHPHQEFIQIDTTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKE 278 QG I+ N + IC GFG N D E++ Sbjct 555 --GQGN---------VINFKNTIIICTSN----------------AGFGNGN---DTEEK 584 Query 279 DLLSKVLPEDLLRFGLIPEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELD 338 D++ ++ +F PEF+ R I LD++AL I+ N L+ + L+ Sbjct 585 DIM-----HEMKKF-FRPEFLNRFNGIVEFLHLDKDALQDIV----NLLLDDVQVTLDKK 634 Query 339 NVELEFEEEALSEIAKKAIERKTGARGLRSIIE 371 + ++ ++A + ++ + + GAR LR I+E Sbjct 635 GITMDVSQDAKDWLIEEGYDEELGARPLRRIVE 667 > sp|Q6GJE4|CLPC_STAAR ATP-dependent Clp protease ATP-binding subunit ClpC OS=Staphylococcus aureus (strain MRSA252) GN=clpC PE=3 SV=1 Length=818 Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 85/329 (26%), Positives = 136/329 (41%), Gaps = 64/329 (19%) Query 67 IREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKTLLA 126 + + L+E VIGQ A S++ AV + + + D + + +GPTG GKT LA Sbjct 502 LEDTLHERVIGQKDAVNSISKAVRR------ARAGLKDPKRPIGSFIFLGPTGVGKTELA 555 Query 127 QTLA-----------RILNVPFAIADATSL---TEAGYVGEDVENILLKLIQAADYDVEK 172 + LA R+ F A S GYVG D L + ++ Y V Sbjct 556 RALAESMFGDDDAMIRVDMSEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVRRKPYSV-- 613 Query 173 AEKGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEF 232 I DEI+K +P V LL++L+ + GR + Sbjct 614 -----ILFDEIEKA-----HPD---------VFNILLQVLDD--GHLTDTKGRTVDFRNT 652 Query 233 IQIDTTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLRF 292 I I T+N+ G +++ +R GFG + D E + +L E L+ Sbjct 653 IIIMTSNV---------GAQELQDQRFA----GFGGSSDGQDYET--IRKTMLKE--LKN 695 Query 293 GLIPEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEI 352 PEF+ R+ I KL +E L I+T +V + L N+ + ++A +I Sbjct 696 SFRPEFLNRVDDIIVFHKLTKEELKEIVT----MMVNKLTNRLSEQNINIIVTDKAKDKI 751 Query 353 AKKAIERKTGARGLRSIIEGIMLDVMFEL 381 A++ + + GAR L I+ + D + EL Sbjct 752 AEEGYDPEYGARPLIRAIQKTIEDNLSEL 780 > tr|Q8Y8B1|Q8Y8B1_LISMO ATP-dependent protease OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=clpE PE=3 SV=1 Length=724 Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 81/321 (25%), Positives = 132/321 (41%), Gaps = 74/321 (23%) Query 75 VIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKTLLAQTLARILN 134 VIGQ+ A K +A A+ R+ SK + + +GPTG GKT L +TLAR L Sbjct 430 VIGQEDAVKKVAKAI--RRSRVGLKSKNRPI----GSFLFVGPTGVGKTELGRTLAREL- 482 Query 135 VPFAIADAT---SLTE--------------AGYVGEDVENILLKLIQAADYDVEKAEKGI 177 F ++A ++E GYVG + L + ++ Y I Sbjct 483 --FGTSEAMIRLDMSEFMEKHSISKLIGSPPGYVGHEEAGQLTEKVRRNPY-------SI 533 Query 178 IYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDT 237 I +DEI+K +P VQ L+ILE + GR ++ + I T Sbjct 534 ILLDEIEKA-----HPD---------VQHMFLQILED--GRLTDSQGRTVSFKDTVIIMT 577 Query 238 TNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLRFGLIPE 297 +N GA D + +GF + + D+L+K L PE Sbjct 578 SN-----AGATD----------TEASVGFNTTTETKLEKGSDILAK------LGAYFKPE 616 Query 298 FIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAKKAI 357 F+ RL + + L+++ LV I+ + ++ +ML + V ++ +E + Sbjct 617 FLNRLDSVIEFKSLEKDDLVQII----DLMLVDLNEMLAQEGVTIDVSKEVKEHLIDLGY 672 Query 358 ERKTGARGLRSIIEGIMLDVM 378 + K GAR LR I+ + D + Sbjct 673 DPKFGARPLRRTIQEHLEDTI 693 > tr|Q8YAB6|Q8YAB6_LISMO Endopeptidase Clp ATP-binding chain C OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=clpC PE=3 SV=1 Length=820 Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 87/339 (26%), Positives = 148/339 (44%), Gaps = 70/339 (21%) Query 67 IREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKTLLA 126 + ++L+E VIGQD A K++++AV + + + D + + +GPTG GKT LA Sbjct 501 MEKLLHERVIGQDAAVKAVSLAVRR------ARAGLKDPKRPIGSFIFLGPTGVGKTELA 554 Query 127 QTLARILNVPFAIADAT---SLTE--------------AGYVGEDVENILLKLIQAADYD 169 + LA + F D+ ++E GYVG + L + ++ Y Sbjct 555 RALAESM---FGDEDSMIRIDMSEYMEKFSTARLVGAPPGYVGYEEGGQLTEKVRQKPYS 611 Query 170 VEKAEKGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPH 229 V + +DEI+K +P + LL++L+ + GR Sbjct 612 V-------VLLDEIEKA-----HPDVF---------NMLLQVLDD--GRLTDSKGRVVDF 648 Query 230 QEFIQIDTTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDL 289 + + I T+NI GA Q +K+ K +GF + D + + +VL + Sbjct 649 RNTVIIMTSNI-----GA-----QEMKQ---DKSMGFNVTDPLKD--HKAMEHRVLQD-- 691 Query 290 LRFGLIPEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEAL 349 L+ PEFI R+ L E+ L I+T L Q K L ++ ++ E A Sbjct 692 LKQAFRPEFINRIDETIVFHSLQEKELKQIVT----LLTAQLTKRLAERDIHVKLTEGAK 747 Query 350 SEIAKKAIERKTGARGLRSIIEGIMLDVMFELPSRDDIE 388 S+IAK + + GAR L+ I+ + D++ E R +I+ Sbjct 748 SKIAKDGYDPEYGARPLKRAIQKEVEDMLSEELLRGNIK 786 > tr|B0S3X9|B0S3X9_FINM2 ATP-dependent protease Clp ATP-binding subunit ClpC OS=Finegoldia magna (strain ATCC 29328) GN=FMG_0335 PE=3 SV=1 Length=806 Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 85/320 (27%), Positives = 138/320 (43%), Gaps = 74/320 (23%) Query 71 LNEYVIGQDQAKKSLAVAVYNHYKRI-----NSNSKVDDVELSKSNISLIGPTGSGKTLL 125 L + VIGQD+A S++ A+ KR N N + + +GPTG GKT L Sbjct 495 LKKVVIGQDKAIDSISNAI----KRARVGLKNPNKPI-------GSFVFVGPTGVGKTYL 543 Query 126 AQTLAR-ILNVPFAI--ADATSLTEA-----------GYVGEDVENILLKLIQAADYDVE 171 A+ LA+ + N A+ D T E GYVG D L +++ Y V Sbjct 544 AKKLAKELFNDENAMIRIDMTEYMEKHSVSKLIGSPPGYVGHDDGGQLTDMVRTKPYSV- 602 Query 172 KAEKGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQE 231 I DEI+K +P V LL++L+ + GR ++ Sbjct 603 ------ILFDEIEKA-----HPD---------VFNTLLQVLDD--GRLTDSKGRVVNFKD 640 Query 232 FIQIDTTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDL-LSKVLPEDLL 290 + I T+NI GA + +E + VIGF N A D+E ++ +K + + Sbjct 641 TVIIMTSNI-----GASE-LE-------SKNVIGF---NTAEDVEVDEYNRNKETINNAM 684 Query 291 RFGLIPEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALS 350 + PEF+ RL + L++E + I + LV + K +++ + ++E+ L Sbjct 685 KSMFKPEFMNRLDDVIVFSNLNKENVKEIAGLMMDELVDRMAK----NDLIISYDEKILD 740 Query 351 EIAKKAIERKTGARGLRSII 370 + K ++K GAR L +I Sbjct 741 YLVDKGYDKKFGARPLERLI 760 > tr|B0S0E3|B0S0E3_FINM2 ATP-dependent zinc metalloprotease FtsH OS=Finegoldia magna (strain ATCC 29328) GN=ftsH PE=3 SV=1 Length=628 Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 48/142 (34%), Positives = 69/142 (49%), Gaps = 13/142 (9%) Query 75 VIGQDQAKKSL--AVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKTLLAQTLARI 132 V GQ++AK +L V + KR N V L K + L+GP G+GKTLLAQ +A Sbjct 165 VAGQEEAKDALLEVVDFLHDPKRYNEIGAV----LPKG-VLLVGPPGTGKTLLAQAVAGE 219 Query 133 LNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIYIDEIDKVARKSEN 192 VPF + E +VG + QAAD KA I++IDEID + ++ + Sbjct 220 AKVPFFSMSGSEFVEM-FVGLGASKVRDLFKQAAD----KA-PCIVFIDEIDAIGKRRDT 273 Query 193 PSITRDVSGEGVQQALLKILEG 214 I+ + E LL ++G Sbjct 274 AGISGNDEREQTLNQLLNEMDG 295 > tr|Q5FM98|Q5FM98_LACAC ATPase OS=Lactobacillus acidophilus (strain ATCC 700396 / NCK56 / N2 / NCFM) GN=clpC PE=3 SV=1 Length=825 Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 79/327 (24%), Positives = 143/327 (44%), Gaps = 67/327 (20%) Query 70 ILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKTLLAQTL 129 IL++ VIGQD+A ++A A+ S S + D + +GPTG GKT LA+++ Sbjct 515 ILHKRVIGQDKAVSAVARAIRR------SRSGIKDERRPIGSFLFLGPTGVGKTELAKSV 568 Query 130 A--------RILNVPFA-----IADATSLTEA-GYVGEDVENILLKLIQAADYDVEKAEK 175 A ++ + + IA + + A GYVG + L + ++ Y V Sbjct 569 AAAMFGSEDNLIRLDMSEYMDQIASSKLIGSAPGYVGYEEGGQLSEQVRRHPYSV----- 623 Query 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKIL-EGTVASVPPQGGRKHPHQEFIQ 234 + +DE++K +P + LL++L EG + GRK + I Sbjct 624 --VLLDEVEKA-----HPDVF---------NLLLQVLDEGFMTD---SKGRKVDFRNTII 664 Query 235 IDTTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLRFGL 294 I T+N+ FDG +GF AD +++ + + + + +F Sbjct 665 IMTSNLG--SRSLFDG-----------NAVGFNADK----IDQAKVRQAKVQQAIKQF-F 706 Query 295 IPEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAK 354 PEF+ R+ ++L ++ L I++ N LV + L+ + L+ AL +I + Sbjct 707 RPEFLNRIDETIVFDELTKKQLRNIVSLLTNKLVVR----LQRKGITLKLSRAALDKIVQ 762 Query 355 KAIERKTGARGLRSIIEGIMLDVMFEL 381 + + GAR L+ I+ + D + E+ Sbjct 763 DGYDPENGARPLKRAIQNDVEDKVAEM 789 > tr|Q5FHW6|Q5FHW6_LACAC ATP-dependent protease OS=Lactobacillus acidophilus (strain ATCC 700396 / NCK56 / N2 / NCFM) GN=clpE PE=4 SV=1 Length=709 Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 87/349 (25%), Positives = 142/349 (41%), Gaps = 83/349 (24%) Query 37 ECIELCTEIVEEELGTEEEVEFKDVPKPQEIREILNEYVIGQDQAKKSLAVAVYNHYKRI 96 + IE T+I EL +E + D+ K L + VI QD+A + A+ K+I Sbjct 370 QIIEQKTKIPMSELHADEAQKNLDLAKK------LKKNVIDQDRAIDVITDAIAR--KQI 421 Query 97 NSNSKVDDVELSKSNISLIGPTGSGKTLLAQTLA--------RILNVPFA-IADATSLTE 147 D + + L GPTG GKT LA+ LA ++ + + D ++ + Sbjct 422 -----FKDSDRPTGSFLLTGPTGVGKTELAKQLAIQLFGNKEHLIRLDMSEYQDEMAVNK 476 Query 148 -----AGYVGEDVENILLKLIQAADYDVEKAEKGIIYIDEIDKVARKSENPSITRDVSGE 202 GYVG L + ++ Y +I DEI+K NP + Sbjct 477 LIGSAPGYVGYGEGGQLTEKVRHQPY-------SLILFDEIEKA-----NPQVF------ 518 Query 203 GVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNILFICGGAFDGIEQIIKRRLGQK 262 ALL+I++ + GR ++ I I T+N F DG Sbjct 519 ---NALLQIMDD--GRLTDAQGRTVSFKDTILIMTSNAGFSDKLLEDG------------ 561 Query 263 VIGFGADNKAADLEKEDLLSKVLPEDLLRFGLIPEFIGRLPVIASLEKLDEEALVAILTK 322 ++++ L+S + E+ R PEF+ RL I L E+ + I+ Sbjct 562 -----------KVDQDKLISAL--ENYFR----PEFLNRLDAIVPFNSLTEQDMGKII-- 602 Query 323 PKNALVKQFKKMLELDNVELEFEEEALSEIAKKAIERKTGARGLRSIIE 371 N +K+ +L V +E +EA +A+K ++K GAR LR ++E Sbjct 603 --NIYLKKMSHVLAKKGVTVEVSDEAKEFLAEKGYDKKFGARPLRRVVE 649 > tr|Q82YZ7|Q82YZ7_ENTFA ATP-dependent Clp protease, ATP-binding subunit ClpC OS=Enterococcus faecalis (strain ATCC 700802 / V583) GN=clpC PE=3 SV=1 Length=831 Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 78/332 (23%), Positives = 144/332 (43%), Gaps = 64/332 (19%) Query 54 EEVEFKDVPKPQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNIS 113 +++E K+ + E+ IL++ V+GQ++A ++++ A+ + S + D + Sbjct 499 QQLEKKESERLMELETILHQRVVGQNEAVEAVSRAIRR------ARSGLKDPARPIGSFM 552 Query 114 LIGPTGSGKTLLAQTLA-----------RILNVPFAIADATSL---TEAGYVGEDVENIL 159 +GPTG GKT LA+ LA R+ F +TS + GYVG + L Sbjct 553 FLGPTGVGKTELAKALAEAMFGSEEALIRVDMSEFMEKYSTSRLIGSPPGYVGYEEGGQL 612 Query 160 LKLIQAADYDVEKAEKGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASV 219 + I+ Y V I +DE++K +P + LL++L+ + Sbjct 613 TEKIRQRPYSV-------ILLDEVEKA-----HPDVF---------NILLQVLDD--GHL 649 Query 220 PPQGGRKHPHQEFIQIDTTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKED 279 GRK + I I T+N+ GA E +K +GF + + + E Sbjct 650 TDAKGRKVDFRNTILIMTSNL-----GATAIRE--------EKHVGFNVKDISKNHE--- 693 Query 280 LLSKVLPEDLLRFGLIPEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDN 339 L+ K + E+ L+ PEF+ R+ L +E + I+ ++VK+ + Sbjct 694 LMQKRIMEE-LKKAFRPEFLNRIDETVVFHSLKQEEIHEIVKIMSQSVVKRMAE----QE 748 Query 340 VELEFEEEALSEIAKKAIERKTGARGLRSIIE 371 V+++ A+ I K + + GAR +R ++ Sbjct 749 VKVKITPAAIEVIGKVGFDPEYGARPIRRALQ 780 > tr|B0S3J0|B0S3J0_FINM2 Chaperone protein ClpB OS=Finegoldia magna (strain ATCC 29328) GN=clpB PE=3 SV=1 Length=861 Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 80/318 (25%), Positives = 128/318 (40%), Gaps = 70/318 (22%) Query 69 EILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKTLLAQT 128 ++L++ V+GQD+A ++ A+ I + S + + + +GPTG GKT LA+ Sbjct 565 KLLHKRVVGQDEAVTAVTDAI------IRARSGLKSLNRPIGSFIFLGPTGVGKTELAKA 618 Query 129 LA-----------RILNVPFAIADATSL---TEAGYVGEDVENILLKLIQAADYDVEKAE 174 L RI + A S GYVG D L + ++ Y V Sbjct 619 LTENMFDDEKNLIRIDMSEYMEKHAVSRLVGAPPGYVGYDEGGQLTEAVRRKPYSV---- 674 Query 175 KGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQ 234 I DEI+K +P V LL++L+ + GR + I Sbjct 675 ---ILFDEIEKA-----HPD---------VFNILLQVLDD--GRLTDNKGRTVDFKNTII 715 Query 235 IDTTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLRFGL 294 I T+NI G+ D IE G + +D + ++ D L+ Sbjct 716 IMTSNI-----GSMDLIE------------GIDDNGNISDESRNSVM------DELKSRF 752 Query 295 IPEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAK 354 PEF+ R+ I + L ++ + I+ K + L KQ LE + +E +E A I Sbjct 753 KPEFLNRIDDIVMFKPLTKDDIYKIIEKQVSLLQKQ----LEDRQITIEIDESAEDLIID 808 Query 355 KAIERKTGARGLRSIIEG 372 KA + GAR ++ IE Sbjct 809 KAYDVLYGARPVKRFIES 826 > sp|B2V338|RUVB_CLOBA Holliday junction ATP-dependent DNA helicase RuvB OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=ruvB PE=3 SV=1 Length=344 Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/129 (33%), Positives = 61/129 (47%), Gaps = 29/129 (22%) Query 63 KPQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGK 122 +PQ+I NEY IGQD+ K+ L N + + N K + ++ L GP G GK Sbjct 21 RPQKI----NEY-IGQDKVKERL-----NIFIKAAKNRKE-----ALDHVLLYGPPGLGK 65 Query 123 TLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIYIDE 182 T LA +A+ + I ++ AG D+ IL L DYDV ++IDE Sbjct 66 TTLANIIAKEMTGDLKITSGPAIERAG----DLAAILTTL---KDYDV-------LFIDE 111 Query 183 IDKVARKSE 191 I ++ R E Sbjct 112 IHRLNRSVE 120 > sp|Q6GGZ9|Y1421_STAAR Uncharacterized protein SAR1421 OS=Staphylococcus aureus (strain MRSA252) GN=SAR1421 PE=3 SV=1 Length=263 Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 53/162 (33%), Positives = 77/162 (48%), Gaps = 44/162 (27%) Query 92 HYKRINSNSKVDD-----VELSKSNISLIGPTGSGKTLLAQTLARILNVPFAIADATSLT 146 HYK NS+S V + +L+K NI L GPTGSGKT LA+TL+ +++ P + + Sbjct 5 HYK--NSDSTVFNDAKALFDLNK-NILLKGPTGSGKTKLAETLSEVVDTPMHQVNCS--- 58 Query 147 EAGYVGEDVENIL-LKLIQA----------ADYDVEKA--EKGIIYIDEIDKVARKSENP 193 V D E++L K I+ D V KA E I+YIDEI+ +A+ P Sbjct 59 ----VDLDTESLLGFKTIKTNAEGQQEIVFVDGPVIKAMKEGHILYIDEIN-MAKPETLP 113 Query 194 ----------SITRDVSGEGVQ-----QALLKILEGTVASVP 220 IT +GE ++ + I EG V ++P Sbjct 114 VLNGVLDYRRQITNPYTGEVIKAVPGFNVIAAINEGYVGTLP 155 > tr|Q837W9|Q837W9_ENTFA ATP-dependent Clp protease, ATP-binding subunit ClpE OS=Enterococcus faecalis (strain ATCC 700802 / V583) GN=clpE PE=3 SV=1 Length=750 Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 98/412 (24%), Positives = 165/412 (40%), Gaps = 98/412 (24%) Query 20 QDQVRKLVAGPGVYICDECIELCTE-----IVEEELGTE-EEVEFKDVPKPQEIREILNE 73 +DQ+ KL A I DE + TE IVE++ G +++ K+ + + + L Sbjct 386 RDQINKLQAMKEKQISDEETPVITEKDIEAIVEQKTGIPVGDLKEKEQTQLKNLAVDLKA 445 Query 74 YVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSN-----ISLIGPTGSGKTLLAQT 128 +V+GQD A +A A+ + + V L K N +GPTG GKT LA+ Sbjct 446 HVVGQDDAVDKVAKAI-----------RRNRVGLGKQNRPIGSFLFVGPTGVGKTELAKQ 494 Query 129 LARIL------NVPFAIADATSL--------TEAGYVGEDVENILLKLIQAADYDVEKAE 174 LA L V F +++ + GYVG D L + ++ Y Sbjct 495 LAFELFGSEDSMVRFDMSEYMEKHSVSKLIGSPPGYVGYDEAGQLTEKVRRNPY------ 548 Query 175 KGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQ 234 +I +DEI+K +P + L+IL+ + GR ++ I Sbjct 549 -SLILLDEIEKA-----HPDVL---------HMFLQILDD--GRLTDAQGRTVSFKDTII 591 Query 235 IDTTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLRFGL 294 I T+N GA + +GFGA +E + VL + L Sbjct 592 IMTSN---AGTGAVEA------------NVGFGA-------AREGVTKSVLGQ--LNNFF 627 Query 295 IPEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAK 354 PEF+ R I + L +E L+ I++ ++++ +L + +E E ++ Sbjct 628 TPEFLNRFDGIIEFKALSKENLMNIVS----LMLEEVNGLLAKQKLHIEVPTEVKEKLVD 683 Query 355 KAIERKTGARGLRSIIEGIMLDVMFE-----------LPSRDDIEKCVITGA 395 + GAR LR I+ + D + E + + D+ K ++TGA Sbjct 684 LGYDPAMGARPLRRTIQEQIEDGIAEYYLDHPENHQLVAALDNEGKIIVTGA 735 > tr|Q5L3T1|Q5L3T1_GEOKA ATP-dependent zinc metalloprotease FtsH OS=Geobacillus kaustophilus (strain HTA426) GN=ftsH PE=3 SV=1 Length=632 Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 41/78 (53%), Gaps = 6/78 (8%) Query 112 ISLIGPTGSGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVE 171 + L+GP G+GKTLLA+ +A VPF + E +VG + L + A + Sbjct 198 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFETA----K 251 Query 172 KAEKGIIYIDEIDKVARK 189 K II+IDEID V R+ Sbjct 252 KNAPCIIFIDEIDAVGRQ 269 > tr|Q81VX5|Q81VX5_BACAN ATP-dependent zinc metalloprotease FtsH OS=Bacillus anthracis GN=ftsH PE=3 SV=1 Length=633 Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 29/76 (38%), Positives = 40/76 (53%), Gaps = 6/76 (8%) Query 114 LIGPTGSGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKA 173 L+GP G+GKTLLA+ +A VPF + E +VG + L + A +K Sbjct 200 LVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFENA----KKN 253 Query 174 EKGIIYIDEIDKVARK 189 II+IDEID V R+ Sbjct 254 APCIIFIDEIDAVGRQ 269 > tr|Q8YAC6|Q8YAC6_LISMO ATP-dependent zinc metalloprotease FtsH OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=ftsH PE=3 SV=1 Length=691 Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 29/76 (38%), Positives = 40/76 (53%), Gaps = 6/76 (8%) Query 114 LIGPTGSGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKA 173 L+GP G+GKTLLA+ +A VPF + E +VG + L + A +K Sbjct 218 LVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFENA----KKN 271 Query 174 EKGIIYIDEIDKVARK 189 II+IDEID V R+ Sbjct 272 APCIIFIDEIDAVGRQ 287 > sp|Q8Y6Z8|RUVB_LISMO Holliday junction ATP-dependent DNA helicase RuvB OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=ruvB PE=3 SV=1 Length=335 Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 43/148 (29%), Positives = 65/148 (44%), Gaps = 31/148 (21%) Query 45 IVEEELGTEEEVEFKDVPKPQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDD 104 I+ E EEV F+ +PQ L++Y IGQD+ K +L V + R N +D Sbjct 5 IISSETVDAEEVSFETSLRPQN----LSQY-IGQDKVKNNLTVFIEAATLR---NEALD- 55 Query 105 VELSKSNISLIGPTGSGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQ 164 ++ L GP G GKT LA +A + ++ G D+ IL L Sbjct 56 ------HVLLYGPPGLGKTTLAMVIASEMGSQIKTTSGPAIERPG----DLATILTSL-- 103 Query 165 AADYDVEKAEKG-IIYIDEIDKVARKSE 191 E G +++IDEI +++R E Sbjct 104 ---------EPGDVLFIDEIHRLSRAIE 122 > tr|Q839B1|Q839B1_ENTFA ATP-dependent zinc metalloprotease FtsH OS=Enterococcus faecalis (strain ATCC 700802 / V583) GN=ftsH PE=3 SV=1 Length=718 Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 29/80 (36%), Positives = 41/80 (51%), Gaps = 6/80 (8%) Query 110 SNISLIGPTGSGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYD 169 + + L GP G+GKTLLA+ +A VPF + E +VG + L + A Sbjct 221 AGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEM-FVGVGASRV-RDLFETA--- 275 Query 170 VEKAEKGIIYIDEIDKVARK 189 +K II+IDEID V R+ Sbjct 276 -KKNAPAIIFIDEIDAVGRQ 294 > tr|Q5FMA3|Q5FMA3_LACAC ATP-dependent zinc metalloprotease FtsH OS=Lactobacillus acidophilus (strain ATCC 700396 / NCK56 / N2 / NCFM) GN=ftsH PE=3 SV=1 Length=718 Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 40/77 (52%), Gaps = 6/77 (8%) Query 110 SNISLIGPTGSGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYD 169 S + L GP G+GKTLLA+ +A NVPF + E +VG + ++ + Sbjct 227 SGVLLEGPPGTGKTLLARAVAGEANVPFYSISGSDFVEM-FVG-----VGASRVRDLFSN 280 Query 170 VEKAEKGIIYIDEIDKV 186 +K II+IDEID + Sbjct 281 AKKNAPSIIFIDEIDAI 297 > tr|Q5FLA7|Q5FLA7_LACAC ATP-dependent Clp protease, ATP-binding subunit OS=Lactobacillus acidophilus (strain ATCC 700396 / NCK56 / N2 / NCFM) GN=clpE PE=3 SV=1 Length=728 Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 80/350 (23%), Positives = 148/350 (42%), Gaps = 77/350 (22%) Query 40 ELCTEIVEEELGTE-EEVEFKDVPKPQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINS 98 ++ +IVEE+ G +++ ++ + Q + L VIGQD+A + +A A+ + RI Sbjct 401 KIMNKIVEEKTGIPVGDIQKQEENQLQNLASDLKSNVIGQDKAVEKVARAIRRN--RIGF 458 Query 99 NSKVDDVELSKSNISLIGPTGSGKTLLAQTLARILNVPFAIADAT---SLTE-------- 147 N + + +GPTG GKT LA+ LA+ + F DA ++E Sbjct 459 NKSGRPI----GSFLFVGPTGVGKTELAKQLAKQM---FGSEDAMIRFDMSEYMEQYSVS 511 Query 148 ------AGYVGEDVENILLKLIQAADYDVEKAEKGIIYIDEIDKVARKSENPSITRDVSG 201 GYVG + L + ++ Y +I +DEI+K +P + Sbjct 512 KLIGSAPGYVGYEEAGQLTEQVRHNPY-------SLILLDEIEKA-----HPDVL----- 554 Query 202 EGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNILFICGGAFDGIEQIIKRRLGQ 261 L+IL+ + GR ++ I I T+N A GI+ Sbjct 555 ----NLFLQILDD--GRLTDSQGRTVSFKDTIIIMTSN-------AGQGIK--------N 593 Query 262 KVIGFGADNKAADLEKEDLLSKVLPEDLLRFGLIPEFIGRLPVIASLEKLDEEALVAILT 321 +GF A+N +D S+ ++ +F PEF+ RL + +L + L+ I+ Sbjct 594 ASVGFTAEN-------DDESSESARNNMSQF-FKPEFLNRLDDVIEFNELTKPDLLEIV- 644 Query 322 KPKNALVKQFKKMLELDNVELEFEEEALSEIAKKAIERKTGARGLRSIIE 371 + +++ M++ + ++ A +++ ++ GAR LR I+ Sbjct 645 ---DLMLQNTNNMVKDQGLHIDVTSAAKNKLVEEGFNPALGARPLRRTIQ 691 > tr|B0S222|B0S222_FINM2 ATP-dependent zinc metalloprotease FtsH OS=Finegoldia magna (strain ATCC 29328) GN=ftsH PE=3 SV=1 Length=631 Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 28/76 (37%), Positives = 38/76 (50%), Gaps = 6/76 (8%) Query 114 LIGPTGSGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKA 173 L+GP G+GKT L++ +A VPF + E +VG + QA +K Sbjct 201 LVGPPGTGKTYLSRAVAGEAKVPFFSISGSDFVEM-FVGVGASRVRDLFEQA-----KKN 254 Query 174 EKGIIYIDEIDKVARK 189 II+IDEID V RK Sbjct 255 APCIIFIDEIDAVGRK 270 Lambda K H a alpha 0.315 0.136 0.374 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 1272597156 Database: bacs.fasta Posted date: Mar 16, 2017 10:42 PM Number of letters in database: 5,842,681 Number of sequences in database: 19,947 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40