Семестр II

Основные параметры генома Bidens mosaic virus


В таблице 1 приведены некоторые важные количественные и качественные характеристики BiMV.


Таблица 1.

Параметр Значение
Латинское название вируса Bidens mosaic virus
Русское название Вирус чередовой мозаики
Количество фрагментов в полном геноме 1
Общая длина генома (п.н.) 9557
Количество кодируемых в геноме белков 1


Последовательность аминокислот белка Bidens mosaic virus.

>YP_008877631.1 polyprotein
MAAVTSSIFFGSFECKLPTFIANSKTVKTEKPKAIKVDPFAELDAMLATRLEKQSYATIR
RMKNGTLCYKYKNEKQMATIKKREAARKAEIKSFMEAPPYIVSKLTIAGGGKPSELEPTK
RIKRIHTTPSTKIRKSFKKTIVTEHELNKLIRSVKQAMAAKCGSIEIIDKKLTHLSYRNK
AGKQRALVTTAHMKGINKQVDFKCEPWVSSVIYTLAKTRNWADVIHVSQLQKGDSGTVLN
SNVIRGTYGRFSNGMFIVRGVYEGKVFDARSKLTRTTMLRMQQFSNAENFWKGIDGNWAR
FRYSTQHTCTPDIPVVECGKMAALVTHSIIPCFKITCGNCARLYAELPTEDLLSMLFQHT
SDGLERLKECEGKFPHVKRLLGLLNSFAKPTGAKLEIFNDIYKTIGERQHAPFKQLNVLN
GFLLRGKMNTAENWEEAQTSLLELSRFQRNRTDNIKKGDITSFRNKLSSKANWNFYLSCD
NQLDKNANFLWGQREYHAKRFFSNFFEEVDPSKGYGAYEIRKNPNGVRKLAIGNLIVPLD
LSEFRLKMKGDFIKQPDISKQCVSLKDGNYVYPCCCTTLDDGTAVESTLYPPTKKHMVIG
NSGEQKYVDLPKGDSEMLYIAKQGYCYINIYLAMLINVNEEDAKDFTKKVRDMCVPKLGE
WPSLMDVATTCAQLRIFYPDVHDAELPRILVDHNTQTCHVVDSYGSMTTGFHILKAATVS
QLILFANDELESDIKHYRVGGVPNDASNLSDGGRPFGSGGAMFSEFHATKVLIRGIFRPK
VMQQLLIDEPYILLMSMLSPGILLAMYNNGSFEIAVKLWINEKQSLAMIATMLSALATKV
SVSDTLLAQRKIMDAAAGDLLEATCDGFQLHMTYLTAITLLQRVKERADSDHSLISGGFL
NYESDVVHLMEKNYLDLLEEAWRDLRWHEKLSAIWHSQKARKFIVKPLLPTGSADLKGMY
DISPRACFGKSLNALQKKRDDFAARCRQYVNDKTMSISTFFISRVVRRLPSLVTFANTLF
ITSLFVSIVSILQSIILEHRMYKQQVLQMKLESDERVCIELYASLQAKLGRTFTWEEFIE
YLQTVNPNIVAFAEAQMAQHIVEHQQSTTGVKNLEQVVAFITLVMMVFDSERSDCVFKTL
NKLKGVVSTLDYGVRHQSLDDFVENFDERNQTVDFELDDDIAQNQNALDIKFTDWWDKQV
QSGFTIPHYRTEGYFIEFTRATAAQVASDIAQSEHLDFLIRGAVGSGKSTGLPTQLSQTG
TVLLLEPTRPLAENVFKQLSSSPFFQKPTLRMRGSSVFGSSPISIMTSGFALHYFAHNRT
QLASYDYVIIDECHVMDSSAMAFRGLLSLHHKACKVLKVSATPPGREVEFTTQYPVKLVI
EDNLSFKSFVEAQGTGSNADMIKHGHNILVYVASYNEVDSLSKMLTDKNMMVTKVDGRTM
KHGSLEIVTRGTQEKAHFIVATNIIENGVTLDIDVVVDFGVKVSPFLDIDNRSVAYNKVS
VSYGERIQRLGRVGRVKPGVALRIGHTEKGLIEIPSMIATEAALACFAYNLPVMSSNVST
SIISNCTVRQVKTMHQFELSPFFVYNFVAHDGTMHPEIHKILNKYKLRDSITPLCEQSVP
YRASSSWLTVSEYERMGIVFDLPQQTKIAFHIRDVPPKLHESLWNTVEKFKDVSIFPSIR
SASISKIAYTLSTDLFAIPRTLIFVDRLIEEERTKQSQFRSYIDSGCSSMFSILNLTNTL
RSKYAKDYTTENIQKLERVRNQLKEFHNLGGSADEHNLIKRFESLQYVHHQSKDALSKDL
KLKGIWNKSLIVKDVLVAGAVAIGGVYLLYSWFTNSMQSVSHQGKTKAKRIQALKFRRAR
DKRAGFELDNNDDTIEEFFGSAYREKGKKKGTTVGMGKSNRRFINMYGFEPGEFSYIQFV
DPLTGAQIEENVYADILDVQERFGDIRRKLIEEDELDPQLTYTNTAIHAYLRKDWSNKAL
KVDLLPHNPLKICDKTNGIAKFPERKGELRQTGGAVEVDVEDIPKVKVEHESKSLMRGLR
DYNPIAQTVCRLKAKTEHGVSEMFGIGFGAYIITNHHFLKSFNGTLEVRSHHGIFKVTNM
MSLQVKPITGRDIVIIKMPKDFPVFPQRIHFRAPNRNERICLVGTNFQEKSVSSTVTETS
ATYAVPRSTFWKHWIATDDGHCGLPVVSTLDGNIIGLHSLANNSTSENYYAAFDEEFEPK
YLRNAEHGEWVKNWRYNPDTVVWGSLELKQSTPSGLFKTTKIIEDLMNHNTVREQSKSST
WMFDALKDGLQAVGYMKNQLVTKHVVKGECRHFKEFLTIDQEASDYFRPLMDAYGKSLLN
REAYIKDIMKYSEPIEIGVVDCDAFEEATARVILYLQMKGFRQCSFITDEQEIFKALNMK
AAVGAMYGGKKKEYFENFSDEDKEAIVMQSCLRLYKGQIGVWNGSLKAELRCKEKILANK
TRTFTAAPLDTLLGGKVCVDDFNNQFYSKNIECCWTVGMTKFYGGWNRLLRSLPDGWIYC
DADGSRFDSSLTPYLINAVLSIRSTYMEDWDIGLQMLKNLYTEIIYTPIATPDGTIVKKF
RGNNSGQPSTVVDNSLMVVLAMHYAFVRENITFDDIDNCCKFFVNGDDLLIAINPEKEHM
LDKFASHFSNLGLNYDFSSRTRNKEELWFMSHRGLEIEGMYIPKLEEERVVSILQWDRAE
LPEHRLEAICAAMIEAWGYPELIHQIRRFYSWLLEQQPFATLAQEGKAPYIASMALRRLY
MDRMVDEDELHEFTKLFCDLDEEFECGCYEVHHQVDETLDAGKDKAKENKDKQVSNPATG
GLAKAKDVNAGASGTHTVPRIKAITSKMRMPKSKGAVALNLNHLLEYTPQQVDISNTRAT
QAQFDTWYEAVRTAYDISETEMPTVMNGLMVWCIENGTSPNINGVWVMMEGQEQIEFPLK
PIIENAKPTFRQIMAHFSDVAEAYIEMRNKKEPYMPRYGLVRNLRDMSLARYAFDFYEVT
SHTSVRAREAHIQMKAAALKSSQTRMFGLDGGIGTQTENTERHTTEDVSPNMHTLLGVRN
M

Назад к описанию вируса

© Marina Gladkova, 2016