RID: NJUMEJST013 Job Title:Protein Sequence Program: BLASTP Query: unnamed protein product ID: lcl|Query_37052(amino acid) Length: 125 Database: swissprot Non-redundant UniProtKB/SwissProt sequences Sequences producing significant alignments: Scientific Common Max Total Query E Per. Acc. Description Name Name Taxid Score Score cover Value Ident Len Accession RecName: Full=Gag-Pol polyprotein; Contains: RecName:... AKR (endogen... NA 11791 226 226 100% 8e-69 100.00 1734 P03356.3 RecName: Full=Gag-pol polyprotein; Contains: RecName:... Murine leuke... NA 31687 226 226 100% 9e-69 100.00 1734 Q7SVK7.2 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Radiation mu... NA 11787 220 220 100% 1e-66 96.80 1734 P11227.2 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Friend murin... NA 11798 220 220 100% 2e-66 96.80 1738 P26808.2 RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contain... Moloney muri... NA 928306 219 219 100% 2e-66 96.80 1738 P03355.5 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Friend murin... NA 11797 219 219 100% 3e-66 96.80 1738 P26809.2 RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contain... Xenotropic M... NA 373193 219 219 87% 3e-66 97.25 1733 A1Z651.1 RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contain... Xenotropic M... NA 356663 219 219 87% 3e-66 97.25 1733 Q2F7J3.1 RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contain... Xenotropic M... NA 356664 219 219 87% 4e-66 97.25 1733 Q2F7J0.1 RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contain... Cas-Br-E mur... NA 11792 219 219 99% 4e-66 95.97 1733 P08361.2 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Friend murin... NA 11796 217 217 100% 2e-65 96.00 1739 P26810.2 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Feline leuke... NA 11768 188 188 87% 2e-55 84.40 1712 P10273.2 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Baboon endog... NA 11764 157 157 87% 2e-44 69.72 1727 P10272.2 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Woolly monke... NA 11970 123 123 90% 1e-32 62.83 1687 P03359.2 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Gibbon ape l... NA 11840 122 122 78% 2e-32 62.24 1686 P21414.2 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr125Pol;... Koala retrov... NA 394239 116 116 78% 3e-30 60.20 1687 Q9TTC1.2 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Reticuloendo... NA 11636 66.6 66.6 60% 1e-12 49.35 1152 P03360.2 Alignments: >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [AKR (endogenous) murine leukemia virus] Sequence ID: P03356.3 Length: 1734 Range 1: 534 to 658 Score:226 bits(577), Expect:8e-69, Method:Compositional matrix adjust., Identities:125/125(100%), Positives:125/125(100%), Gaps:0/125(0%) Query 1 TLDDqggqgqepppepRITLTVGGQPVTFLVDTGAQHSVLTQNPGPLSDRSAWVQGATGG 60 TLDDQGGQGQEPPPEPRITLTVGGQPVTFLVDTGAQHSVLTQNPGPLSDRSAWVQGATGG Sbjct 534 TLDDQGGQGQEPPPEPRITLTVGGQPVTFLVDTGAQHSVLTQNPGPLSDRSAWVQGATGG 593 Query 61 KRYRWTTDRKVHLATGKVTHSFLHVPDCPYPLLGRDLLTKLKAQIHFEGSGAQVVGPKGQ 120 KRYRWTTDRKVHLATGKVTHSFLHVPDCPYPLLGRDLLTKLKAQIHFEGSGAQVVGPKGQ Sbjct 594 KRYRWTTDRKVHLATGKVTHSFLHVPDCPYPLLGRDLLTKLKAQIHFEGSGAQVVGPKGQ 653 Query 121 PLQVL 125 PLQVL Sbjct 654 PLQVL 658 >RecName: Full=Gag-pol polyprotein; Contains: RecName: Full=Matrix protein p15; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Murine leukemia virus (strain BM5 ECO)] Sequence ID: Q7SVK7.2 Length: 1734 Range 1: 534 to 658 Score:226 bits(577), Expect:9e-69, Method:Compositional matrix adjust., Identities:125/125(100%), Positives:125/125(100%), Gaps:0/125(0%) Query 1 TLDDqggqgqepppepRITLTVGGQPVTFLVDTGAQHSVLTQNPGPLSDRSAWVQGATGG 60 TLDDQGGQGQEPPPEPRITLTVGGQPVTFLVDTGAQHSVLTQNPGPLSDRSAWVQGATGG Sbjct 534 TLDDQGGQGQEPPPEPRITLTVGGQPVTFLVDTGAQHSVLTQNPGPLSDRSAWVQGATGG 593 Query 61 KRYRWTTDRKVHLATGKVTHSFLHVPDCPYPLLGRDLLTKLKAQIHFEGSGAQVVGPKGQ 120 KRYRWTTDRKVHLATGKVTHSFLHVPDCPYPLLGRDLLTKLKAQIHFEGSGAQVVGPKGQ Sbjct 594 KRYRWTTDRKVHLATGKVTHSFLHVPDCPYPLLGRDLLTKLKAQIHFEGSGAQVVGPKGQ 653 Query 121 PLQVL 125 PLQVL Sbjct 654 PLQVL 658 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Radiation murine leukemia virus] Sequence ID: P11227.2 Length: 1734 Range 1: 534 to 658 Score:220 bits(561), Expect:1e-66, Method:Compositional matrix adjust., Identities:121/125(97%), Positives:123/125(98%), Gaps:0/125(0%) Query 1 TLDDqggqgqepppepRITLTVGGQPVTFLVDTGAQHSVLTQNPGPLSDRSAWVQGATGG 60 TLDDQGGQGQEPPPEPRITL VGGQPVTFLVDTGAQHSVLTQNPGPLSDRSAWVQGATGG Sbjct 534 TLDDQGGQGQEPPPEPRITLKVGGQPVTFLVDTGAQHSVLTQNPGPLSDRSAWVQGATGG 593 Query 61 KRYRWTTDRKVHLATGKVTHSFLHVPDCPYPLLGRDLLTKLKAQIHFEGSGAQVVGPKGQ 120 KRYRWTTDRKVHLATGKVTHSFLHVPDCPYPLLGRDLLTKLKAQIHF+GSGAQ+VGP GQ Sbjct 594 KRYRWTTDRKVHLATGKVTHSFLHVPDCPYPLLGRDLLTKLKAQIHFKGSGAQIVGPMGQ 653 Query 121 PLQVL 125 PLQVL Sbjct 654 PLQVL 658 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p15; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Friend murine leukemia virus (ISOLATE PVC-211)] Sequence ID: P26808.2 Length: 1738 Range 1: 535 to 659 Score:220 bits(560), Expect:2e-66, Method:Compositional matrix adjust., Identities:121/125(97%), Positives:123/125(98%), Gaps:0/125(0%) Query 1 TLDDqggqgqepppepRITLTVGGQPVTFLVDTGAQHSVLTQNPGPLSDRSAWVQGATGG 60 TLDDQGGQGQEPPPEPRITL VGGQPVTFLVDTGAQHSVLTQNPGPLSD+SAWVQGATGG Sbjct 535 TLDDQGGQGQEPPPEPRITLKVGGQPVTFLVDTGAQHSVLTQNPGPLSDKSAWVQGATGG 594 Query 61 KRYRWTTDRKVHLATGKVTHSFLHVPDCPYPLLGRDLLTKLKAQIHFEGSGAQVVGPKGQ 120 KRYRWTTDR+VHLATGKVTHSFLHVPDCPYPLLGRDLLTKLKAQIHFEGSGAQVVGP GQ Sbjct 595 KRYRWTTDRRVHLATGKVTHSFLHVPDCPYPLLGRDLLTKLKAQIHFEGSGAQVVGPMGQ 654 Query 121 PLQVL 125 PLQVL Sbjct 655 PLQVL 659 >RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Short=PR; AltName: Full=p14; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; AltName: Full=p80; Contains: RecName: Full=Integrase; Short=IN; AltName: Full=p46 [Moloney murine leukemia virus isolate Shinnick] Sequence ID: P03355.5 Length: 1738 Range 1: 535 to 659 Score:219 bits(559), Expect:2e-66, Method:Compositional matrix adjust., Identities:121/125(97%), Positives:123/125(98%), Gaps:0/125(0%) Query 1 TLDDqggqgqepppepRITLTVGGQPVTFLVDTGAQHSVLTQNPGPLSDRSAWVQGATGG 60 TLDDQGGQGQEPPPEPRITL VGGQPVTFLVDTGAQHSVLTQNPGPLSD+SAWVQGATGG Sbjct 535 TLDDQGGQGQEPPPEPRITLKVGGQPVTFLVDTGAQHSVLTQNPGPLSDKSAWVQGATGG 594 Query 61 KRYRWTTDRKVHLATGKVTHSFLHVPDCPYPLLGRDLLTKLKAQIHFEGSGAQVVGPKGQ 120 KRYRWTTDRKVHLATGKVTHSFLHVPDCPYPLLGRDLLTKLKAQIHFEGSGAQV+GP GQ Sbjct 595 KRYRWTTDRKVHLATGKVTHSFLHVPDCPYPLLGRDLLTKLKAQIHFEGSGAQVMGPMGQ 654 Query 121 PLQVL 125 PLQVL Sbjct 655 PLQVL 659 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p15; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Friend murine leukemia virus (ISOLATE FB29)] Sequence ID: P26809.2 Length: 1738 Range 1: 535 to 659 Score:219 bits(559), Expect:3e-66, Method:Compositional matrix adjust., Identities:121/125(97%), Positives:123/125(98%), Gaps:0/125(0%) Query 1 TLDDqggqgqepppepRITLTVGGQPVTFLVDTGAQHSVLTQNPGPLSDRSAWVQGATGG 60 TLDDQGGQGQEPPPEPRITL VGGQPVTFLVDTGAQHSVLTQNPGPLSD+SAWVQGATGG Sbjct 535 TLDDQGGQGQEPPPEPRITLRVGGQPVTFLVDTGAQHSVLTQNPGPLSDKSAWVQGATGG 594 Query 61 KRYRWTTDRKVHLATGKVTHSFLHVPDCPYPLLGRDLLTKLKAQIHFEGSGAQVVGPKGQ 120 KRYRWTTDR+VHLATGKVTHSFLHVPDCPYPLLGRDLLTKLKAQIHFEGSGAQVVGP GQ Sbjct 595 KRYRWTTDRRVHLATGKVTHSFLHVPDCPYPLLGRDLLTKLKAQIHFEGSGAQVVGPMGQ 654 Query 121 PLQVL 125 PLQVL Sbjct 655 PLQVL 659 >RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10; Short=NC-pol; Contains: RecName: Full=Protease p14; Short=PR; Contains: RecName: Full=Reverse transcriptase/ribonuclease H p80; Short=RT; Contains: RecName: Full=Integrase p46; Short=IN [Xenotropic MuLV-related virus VP62] Sequence ID: A1Z651.1 Length: 1733 Range 1: 549 to 657 Score:219 bits(558), Expect:3e-66, Method:Compositional matrix adjust., Identities:106/109(97%), Positives:107/109(98%), Gaps:0/109(0%) Query 17 RITLTVGGQPVTFLVDTGAQHSVLTQNPGPLSDRSAWVQGATGGKRYRWTTDRKVHLATG 76 RITL VGGQPVTFLVDTGAQHSVLTQNPGPLSD+SAWVQGATGGKRYRWTTDRKVHLATG Sbjct 549 RITLKVGGQPVTFLVDTGAQHSVLTQNPGPLSDKSAWVQGATGGKRYRWTTDRKVHLATG 608 Query 77 KVTHSFLHVPDCPYPLLGRDLLTKLKAQIHFEGSGAQVVGPKGQPLQVL 125 KVTHSFLHVPDCPYPLLGRDLLTKLKAQIHFEGSGAQVVGP GQPLQVL Sbjct 609 KVTHSFLHVPDCPYPLLGRDLLTKLKAQIHFEGSGAQVVGPMGQPLQVL 657 >RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10; Short=NC-pol; Contains: RecName: Full=Protease p14; Short=PR; Contains: RecName: Full=Reverse transcriptase/ribonuclease H p80; Short=RT; Contains: RecName: Full=Integrase p46; Short=IN [Xenotropic MuLV-related virus VP35] Sequence ID: Q2F7J3.1 Length: 1733 Range 1: 549 to 657 Score:219 bits(558), Expect:3e-66, Method:Compositional matrix adjust., Identities:106/109(97%), Positives:107/109(98%), Gaps:0/109(0%) Query 17 RITLTVGGQPVTFLVDTGAQHSVLTQNPGPLSDRSAWVQGATGGKRYRWTTDRKVHLATG 76 RITL VGGQPVTFLVDTGAQHSVLTQNPGPLSD+SAWVQGATGGKRYRWTTDRKVHLATG Sbjct 549 RITLKVGGQPVTFLVDTGAQHSVLTQNPGPLSDKSAWVQGATGGKRYRWTTDRKVHLATG 608 Query 77 KVTHSFLHVPDCPYPLLGRDLLTKLKAQIHFEGSGAQVVGPKGQPLQVL 125 KVTHSFLHVPDCPYPLLGRDLLTKLKAQIHFEGSGAQVVGP GQPLQVL Sbjct 609 KVTHSFLHVPDCPYPLLGRDLLTKLKAQIHFEGSGAQVVGPMGQPLQVL 657 >RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10; Short=NC-pol; Contains: RecName: Full=Protease p14; Short=PR; Contains: RecName: Full=Reverse transcriptase/ribonuclease H p80; Short=RT; Contains: RecName: Full=Integrase p46; Short=IN [Xenotropic MuLV-related virus VP42] Sequence ID: Q2F7J0.1 Length: 1733 Range 1: 549 to 657 Score:219 bits(558), Expect:4e-66, Method:Compositional matrix adjust., Identities:106/109(97%), Positives:107/109(98%), Gaps:0/109(0%) Query 17 RITLTVGGQPVTFLVDTGAQHSVLTQNPGPLSDRSAWVQGATGGKRYRWTTDRKVHLATG 76 RITL VGGQPVTFLVDTGAQHSVLTQNPGPLSD+SAWVQGATGGKRYRWTTDRKVHLATG Sbjct 549 RITLKVGGQPVTFLVDTGAQHSVLTQNPGPLSDKSAWVQGATGGKRYRWTTDRKVHLATG 608 Query 77 KVTHSFLHVPDCPYPLLGRDLLTKLKAQIHFEGSGAQVVGPKGQPLQVL 125 KVTHSFLHVPDCPYPLLGRDLLTKLKAQIHFEGSGAQVVGP GQPLQVL Sbjct 609 KVTHSFLHVPDCPYPLLGRDLLTKLKAQIHFEGSGAQVVGPMGQPLQVL 657 >RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contains: RecName: Full=Matrix protein p15; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Cas-Br-E murine leukemia virus] Sequence ID: P08361.2 Length: 1733 Range 1: 534 to 657 Score:219 bits(558), Expect:4e-66, Method:Compositional matrix adjust., Identities:119/124(96%), Positives:122/124(98%), Gaps:0/124(0%) Query 2 LDDqggqgqepppepRITLTVGGQPVTFLVDTGAQHSVLTQNPGPLSDRSAWVQGATGGK 61 LDDQGG+GQEPPPEPRITL VGGQPVTFLVDTGAQHSVLTQNPGPLSD+SAWVQGATGGK Sbjct 534 LDDQGGRGQEPPPEPRITLKVGGQPVTFLVDTGAQHSVLTQNPGPLSDKSAWVQGATGGK 593 Query 62 RYRWTTDRKVHLATGKVTHSFLHVPDCPYPLLGRDLLTKLKAQIHFEGSGAQVVGPKGQP 121 RYRWTTDRKVHLATGKVTHSFLHVPDCPYPLLGRDLLTKL AQIHFEGSGAQVVGP+GQP Sbjct 594 RYRWTTDRKVHLATGKVTHSFLHVPDCPYPLLGRDLLTKLNAQIHFEGSGAQVVGPRGQP 653 Query 122 LQVL 125 LQVL Sbjct 654 LQVL 657 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p15; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Friend murine leukemia virus (ISOLATE 57)] Sequence ID: P26810.2 Length: 1739 Range 1: 536 to 660 Score:217 bits(552), Expect:2e-65, Method:Compositional matrix adjust., Identities:120/125(96%), Positives:122/125(97%), Gaps:0/125(0%) Query 1 TLDDqggqgqepppepRITLTVGGQPVTFLVDTGAQHSVLTQNPGPLSDRSAWVQGATGG 60 TLDDQGGQGQEPPPEPRITL VGGQPVTFLVDTGAQHSVLTQNPGPLSD+SAWVQGATGG Sbjct 536 TLDDQGGQGQEPPPEPRITLKVGGQPVTFLVDTGAQHSVLTQNPGPLSDKSAWVQGATGG 595 Query 61 KRYRWTTDRKVHLATGKVTHSFLHVPDCPYPLLGRDLLTKLKAQIHFEGSGAQVVGPKGQ 120 KRYRWTTDR+VHLATGKVTHSFLHVPDCPYPLLGR LLTKLKAQIHFEGSGAQVVGP GQ Sbjct 596 KRYRWTTDRRVHLATGKVTHSFLHVPDCPYPLLGRHLLTKLKAQIHFEGSGAQVVGPMGQ 655 Query 121 PLQVL 125 PLQVL Sbjct 656 PLQVL 660 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p15; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Feline leukemia virus] Sequence ID: P10273.2 Length: 1712 Range 1: 519 to 627 Score:188 bits(478), Expect:2e-55, Method:Compositional matrix adjust., Identities:92/109(84%), Positives:98/109(89%), Gaps:0/109(0%) Query 17 RITLTVGGQPVTFLVDTGAQHSVLTQNPGPLSDRSAWVQGATGGKRYRWTTDRKVHLATG 76 RITL +GGQPVTFLVDTGAQHSVLT+ GPLSDR+A VQGATG K YRWTTDR+V LATG Sbjct 519 RITLKIGGQPVTFLVDTGAQHSVLTRPDGPLSDRTALVQGATGSKNYRWTTDRRVQLATG 578 Query 77 KVTHSFLHVPDCPYPLLGRDLLTKLKAQIHFEGSGAQVVGPKGQPLQVL 125 KVTHSFL+VP+CPYPLLGRDLLTKLKAQIHF G GA VVGPKG PLQVL Sbjct 579 KVTHSFLYVPECPYPLLGRDLLTKLKAQIHFTGEGANVVGPKGLPLQVL 627 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Baboon endogenous virus strain M7] Sequence ID: P10272.2 Length: 1727 Range 1: 550 to 658 Score:157 bits(397), Expect:2e-44, Method:Compositional matrix adjust., Identities:76/109(70%), Positives:89/109(81%), Gaps:0/109(0%) Query 17 RITLTVGGQPVTFLVDTGAQHSVLTQNPGPLSDRSAWVQGATGGKRYRWTTDRKVHLATG 76 R+TL+VGG P TFLVDTGAQHSVLT+ GPLS R++WVQGATG K ++WT R V+L G Sbjct 550 RLTLSVGGHPTTFLVDTGAQHSVLTKANGPLSSRTSWVQGATGRKMHKWTNRRTVNLGQG 609 Query 77 KVTHSFLHVPDCPYPLLGRDLLTKLKAQIHFEGSGAQVVGPKGQPLQVL 125 VTHSFL VP+CPYPLLGRDLLTKL AQIHF +GAQV+ GQP+Q+L Sbjct 610 MVTHSFLVVPECPYPLLGRDLLTKLGAQIHFSEAGAQVLDRDGQPIQIL 658 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Short=PR; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; AltName: Full=p80; Contains: RecName: Full=Integrase; Short=IN; AltName: Full=p46 [Woolly monkey sarcoma virus] Sequence ID: P03359.2 Length: 1687 Range 1: 519 to 631 Score:123 bits(308), Expect:1e-32, Method:Compositional matrix adjust., Identities:71/113(63%), Positives:83/113(73%), Gaps:0/113(0%) Query 2 LDDqggqgqepppepRITLTVGGQPVTFLVDTGAQHSVLTQNPGPLSDRSAWVQGATGGK 61 LDDQG +G +P PEPR+TLTV G P+ FLVDTGA+HSVLTQ G + R V+GATG K Sbjct 519 LDDQGSRGSDPLPEPRVTLTVEGTPIEFLVDTGAEHSVLTQPMGKVGSRRTVVEGATGSK 578 Query 62 RYRWTTDRKVHLATGKVTHSFLHVPDCPYPLLGRDLLTKLKAQIHFEGSGAQV 114 Y WTT R + + +VTHSFL +P+CP PLLGRDLLTKLKAQI F G QV Sbjct 579 VYPWTTKRLLKIGHKQVTHSFLVIPECPAPLLGRDLLTKLKAQIQFSAEGPQV 631 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Gibbon ape leukemia virus] Sequence ID: P21414.2 Length: 1686 Range 1: 533 to 630 Score:122 bits(306), Expect:2e-32, Method:Compositional matrix adjust., Identities:61/98(62%), Positives:71/98(72%), Gaps:0/98(0%) Query 17 RITLTVGGQPVTFLVDTGAQHSVLTQNPGPLSDRSAWVQGATGGKRYRWTTDRKVHLATG 76 R+TLTV G P+ FLVDTGA+HSVLTQ G + R V+GATG K Y WTT R + + Sbjct 533 RVTLTVEGTPIEFLVDTGAEHSVLTQPMGKVGSRRTVVEGATGSKVYPWTTKRLLKIGHK 592 Query 77 KVTHSFLHVPDCPYPLLGRDLLTKLKAQIHFEGSGAQV 114 +VTHSFL +P+CP PLLGRDLLTKLKAQI F G QV Sbjct 593 QVTHSFLVIPECPAPLLGRDLLTKLKAQIQFSAEGPQV 630 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr125Pol; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease/Reverse transcriptase/ribonuclease H; AltName: Full=p87; Contains: RecName: Full=Integrase; Short=IN; AltName: Full=p42 [Koala retrovirus] Sequence ID: Q9TTC1.2 Length: 1687 Range 1: 534 to 631 Score:116 bits(291), Expect:3e-30, Method:Compositional matrix adjust., Identities:59/98(60%), Positives:69/98(70%), Gaps:0/98(0%) Query 17 RITLTVGGQPVTFLVDTGAQHSVLTQNPGPLSDRSAWVQGATGGKRYRWTTDRKVHLATG 76 R+TLTV G P FLVDTGA+HSVLT+ G + + V GATG K Y WTT R + + Sbjct 534 RVTLTVEGIPTEFLVDTGAEHSVLTKPMGKMGSKRTVVAGATGSKVYPWTTKRLLKIGQK 593 Query 77 KVTHSFLHVPDCPYPLLGRDLLTKLKAQIHFEGSGAQV 114 +VTHSFL +P+CP PLLGRDLLTKLKAQI F G QV Sbjct 594 QVTHSFLVIPECPAPLLGRDLLTKLKAQIQFSTEGPQV 631 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Reticuloendotheliosis virus] Sequence ID: P03360.2 Length: 1152 Range 1: 1 to 77 Score:66.6 bits(161), Expect:1e-12, Method:Compositional matrix adjust., Identities:38/77(49%), Positives:47/77(61%), Gaps:1/77(1%) Query 47 LSDRSAWVQGATGGKR-YRWTTDRKVHLATGKVTHSFLHVPDCPYPLLGRDLLTKLKAQI 105 +S S + GATG R Y + R V L G VTHSFL +P+CP PLLGRDLL KL+A I Sbjct 1 MSKESVAIIGATGNIRNYPKSEGRLVDLGRGLVTHSFLVIPECPDPLLGRDLLQKLRATI 60 Query 106 HFEGSGAQVVGPKGQPL 122 F G G + +G+ L Sbjct 61 SFTGEGPPEIRTEGKLL 77