******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.5.1 (Release date: Sun Jan 29 10:33:12 2023 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= train.fa CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ seq1_ECOLI 1.0000 100 seq2_ECOLI 1.0000 100 seq3_ECOLI 1.0000 100 seq4_ECOLI 1.0000 100 seq5_ECOLI 1.0000 100 seq6_ECOLI 1.0000 100 seq7_ECOLI 1.0000 100 seq8_ECOLI 1.0000 100 seq9_ECOLI 1.0000 100 seq10_ECOLI 1.0000 100 seq11_ECOLI 1.0000 100 seq12_ECOLI 1.0000 100 seq13_ECOLI 1.0000 100 seq14_ECOLI 1.0000 100 seq15_ECOLI 1.0000 100 seq16_ECOLI 1.0000 100 seq17_ECOLI 1.0000 100 seq18_ECOLI 1.0000 100 seq19_ECOLI 1.0000 100 seq20_ECOLI 1.0000 100 seq21_ECOLI 1.0000 100 seq22_ECOLI 1.0000 100 seq23_ECOLI 1.0000 100 seq24_ECOLI 1.0000 100 seq25_ECOLI 1.0000 100 seq26_ECOLI 1.0000 100 seq27_ECOLI 1.0000 100 seq28_ECOLI 1.0000 100 seq29_ECOLI 1.0000 100 seq30_ECOLI 1.0000 100 seq31_ECOLI 1.0000 100 seq32_ECOLI 1.0000 100 seq33_ECOLI 1.0000 100 seq34_ECOLI 1.0000 100 seq35_ECOLI 1.0000 100 seq36_ECOLI 1.0000 100 seq37_ECOLI 1.0000 100 seq38_ECOLI 1.0000 100 seq39_ECOLI 1.0000 100 seq40_ECOLI 1.0000 100 seq41_ECOLI 1.0000 100 seq42_ECOLI 1.0000 100 seq43_ECOLI 1.0000 100 seq44_ECOLI 1.0000 100 seq45_ECOLI 1.0000 100 seq46_ECOLI 1.0000 100 seq47_ECOLI 1.0000 100 seq48_ECOLI 1.0000 100 seq49_ECOLI 1.0000 100 seq50_ECOLI 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme train.fa -dna -minw 6 -maxw 50 -nmotifs 3 model: mod= zoops nmotifs= 3 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 6 maxw= 50 nsites: minsites= 2 maxsites= 50 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 5000 N= 50 sample: seed= 0 hsfrac= 0 searchsize= 5000 norand= no csites= 1000 Letter frequencies in dataset: A 0.293 C 0.209 G 0.212 T 0.286 Background letter frequencies (from file dataset with add-one prior applied): A 0.293 C 0.209 G 0.212 T 0.286 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GCBYMADVKTTSCHKVGCCGBMGCGTHKVNRSTAVACTNCSCGCCYBT MEME-1 width = 48 sites = 4 llr = 152 E-value = 6.9e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCBYMADVKTTSCHKVGCCGBMGCGTHKVNRSTAVACTNCSCGCCYBT MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::::5855:::::3:3:3:3:5:3::3:335::838::3::::::::: pos.-specific C :8355::3:::583:5:88:35:8333:53:5::3:a:3a5838855: probability G a35::3335:35::538:385:8:8::53355:353::3:5:8:3:3: matrix T ::35::3:5a8:355:3:::3:3::855:3::a::::a3::3:3:53a bits 2.3 * * * 2.0 * * * 1.8 * * * ** * * 1.6 * * * ** * * Relative 1.4 ** * ** **** *** ** ** ****** * Entropy 1.1 ** * * ***** * **** **** * *** *** ******* * (54.7 bits) 0.9 ** *** ***** * **** ***** * **** *** ******* * 0.7 ****** ***** ************ ** ******** ********* 0.5 ***************************** ******** ********* 0.2 ***************************** ******** ********* 0.0 ------------------------------------------------ Multilevel GCGCAAAAGTTCCTGCGCCGGAGCGTTGCAACTAGACTACCCGCCCCT consensus GCTCGGCT GGTATATAGACCTACCATACGG GAG C GTCTGTG sequence T TG C G T C GG C G T T T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCBYMADVKTTSCHKVGCCGBMGCGTHKVNRSTAVACTNCSCGCCYBT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ------------------------------------------------ seq9_ECOLI 30 5.44e-20 TTTGATTCCT GCGTAAAATTTGTCTCGCCGTCGCGTTGCGAGTAGACTTCGTGCCCTT GTCAAAAACT seq17_ECOLI 29 1.13e-19 AATGCCCACT GCTCCGGCGTGCCTGCGCCGGAGCGTTTATGCTAAACTGCGCGCCTGT TTTTTTGCCA seq40_ECOLI 30 1.81e-17 ATCCAAAAGG GGGTAAAGGTTGCAGGGAGAGCGCCCCGGCACTAGACTACCCGCCTCT TATTTTAGTC seq42_ECOLI 8 2.83e-16 CTGTTTC GCCCCATATTTCCTTATCCGCATAGTATCAGGTGCGCTCCCCCTGCCT CACGTATATA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCBYMADVKTTSCHKVGCCGBMGCGTHKVNRSTAVACTNCSCGCCYBT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- seq9_ECOLI 5.4e-20 29_[+1]_23 seq17_ECOLI 1.1e-19 28_[+1]_24 seq40_ECOLI 1.8e-17 29_[+1]_23 seq42_ECOLI 2.8e-16 7_[+1]_45 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCBYMADVKTTSCHKVGCCGBMGCGTHKVNRSTAVACTNCSCGCCYBT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCBYMADVKTTSCHKVGCCGBMGCGTHKVNRSTAVACTNCSCGCCYBT width=48 seqs=4 seq9_ECOLI ( 30) GCGTAAAATTTGTCTCGCCGTCGCGTTGCGAGTAGACTTCGTGCCCTT 1 seq17_ECOLI ( 29) GCTCCGGCGTGCCTGCGCCGGAGCGTTTATGCTAAACTGCGCGCCTGT 1 seq40_ECOLI ( 30) GGGTAAAGGTTGCAGGGAGAGCGCCCCGGCACTAGACTACCCGCCTCT 1 seq42_ECOLI ( 8) GCCCCATATTTCCTTATCCGCATAGTATCAGGTGCGCTCCCCCTGCCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCBYMADVKTTSCHKVGCCGBMGCGTHKVNRSTAVACTNCSCGCCYBT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 48 n= 2650 bayes= 10.1074 E= 6.9e+000 -865 -865 223 -865 -865 184 24 -865 -865 26 124 -19 -865 126 -865 80 77 126 -865 -865 135 -865 24 -865 77 -865 24 -19 77 26 24 -865 -865 -865 124 80 -865 -865 -865 180 -865 -865 24 139 -865 126 124 -865 -865 184 -865 -19 -23 26 -865 80 -865 -865 124 80 -23 126 24 -865 -865 -865 182 -19 -23 184 -865 -865 -865 184 24 -865 -23 -865 182 -865 -865 26 124 -19 77 126 -865 -865 -865 -865 182 -19 -23 184 -865 -865 -865 26 182 -865 -865 26 -865 139 -23 26 -865 80 -865 -865 124 80 -23 126 24 -865 -23 26 24 -19 77 -865 124 -865 -865 126 124 -865 -865 -865 -865 180 135 -865 24 -865 -23 26 124 -865 135 -865 24 -865 -865 226 -865 -865 -865 -865 -865 180 -23 26 24 -19 -865 226 -865 -865 -865 126 124 -865 -865 184 -865 -19 -865 26 182 -865 -865 184 -865 -19 -865 184 24 -865 -865 126 -865 80 -865 126 24 -19 -865 -865 -865 180 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCBYMADVKTTSCHKVGCCGBMGCGTHKVNRSTAVACTNCSCGCCYBT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 48 nsites= 4 E= 6.9e+000 0.000000 0.000000 1.000000 0.000000 0.000000 0.750000 0.250000 0.000000 0.000000 0.250000 0.500000 0.250000 0.000000 0.500000 0.000000 0.500000 0.500000 0.500000 0.000000 0.000000 0.750000 0.000000 0.250000 0.000000 0.500000 0.000000 0.250000 0.250000 0.500000 0.250000 0.250000 0.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.250000 0.750000 0.000000 0.500000 0.500000 0.000000 0.000000 0.750000 0.000000 0.250000 0.250000 0.250000 0.000000 0.500000 0.000000 0.000000 0.500000 0.500000 0.250000 0.500000 0.250000 0.000000 0.000000 0.000000 0.750000 0.250000 0.250000 0.750000 0.000000 0.000000 0.000000 0.750000 0.250000 0.000000 0.250000 0.000000 0.750000 0.000000 0.000000 0.250000 0.500000 0.250000 0.500000 0.500000 0.000000 0.000000 0.000000 0.000000 0.750000 0.250000 0.250000 0.750000 0.000000 0.000000 0.000000 0.250000 0.750000 0.000000 0.000000 0.250000 0.000000 0.750000 0.250000 0.250000 0.000000 0.500000 0.000000 0.000000 0.500000 0.500000 0.250000 0.500000 0.250000 0.000000 0.250000 0.250000 0.250000 0.250000 0.500000 0.000000 0.500000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 0.000000 0.000000 1.000000 0.750000 0.000000 0.250000 0.000000 0.250000 0.250000 0.500000 0.000000 0.750000 0.000000 0.250000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.250000 0.250000 0.250000 0.250000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 0.750000 0.000000 0.250000 0.000000 0.250000 0.750000 0.000000 0.000000 0.750000 0.000000 0.250000 0.000000 0.750000 0.250000 0.000000 0.000000 0.500000 0.000000 0.500000 0.000000 0.500000 0.250000 0.250000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCBYMADVKTTSCHKVGCCGBMGCGTHKVNRSTAVACTNCSCGCCYBT MEME-1 regular expression -------------------------------------------------------------------------------- G[CG][GCT][CT][AC][AG][AGT][ACG][GT]T[TG][CG][CT][TAC][GT][CAG][GT][CA][CG][GA][GCT][AC][GT][CA][GC][TC][TAC][GT][CAG][ACGT][AG][CG]T[AG][GAC][AG]CT[ACGT]C[CG][CT][GC][CT][CG][CT][CGT]T -------------------------------------------------------------------------------- Time 2.06 secs. ******************************************************************************** ******************************************************************************** MOTIF CGTKKMTGMVGRARRBWSCBRTTYDSRSHHTDCYSYCGCHST MEME-2 width = 42 sites = 3 llr = 118 E-value = 1.4e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGTKKMTGMVGRARRBWSCBRTTYDSRSHHTDCYSYCGCHST MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::3::33:7a77:3:::7:::3:7:33:3:::::::3:: pos.-specific C a::::7::73:::::3:3a3:::3:7:733::a733a:a37: probability G :a:77::a:3a3:333:7:33:::3333:::3::7::a::3: matrix T ::a33:a::::::::37::3:aa73:::33a3:3:7:::3:a bits 2.3 ** * * * * *** 2.0 ** * * * * *** 1.8 *** ** * * * ** * * *** * 1.6 *** ** * * * ** * * *** * Relative 1.4 *** ** * * ** ** * * * * * *** ** Entropy 1.1 ********* * * ** *** * * * ******* ** (56.7 bits) 0.9 ********* ***** *** **** *** * ******* ** 0.7 ********* ***** *** **** *** * ******* ** 0.5 ****************************************** 0.2 ****************************************** 0.0 ------------------------------------------ Multilevel CGTGGCTGCAGAAAACTGCCATTTACACAATACCGTCGCACT consensus TTA AC G GGGAC GG CGGGGCC G TCC CG sequence G T T T TT T T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGTKKMTGMVGRARRBWSCBRTTYDSRSHHTDCYSYCGCHST MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ------------------------------------------ seq41_ECOLI 19 3.38e-20 ATGATAAGGC CGTGGCTGCGGAAAGTTCCGGTTTACACCCTGCCGTCGCTGT GCTGCAATCT seq36_ECOLI 18 6.22e-18 GCTATCGGTG CGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACT CGATGCTTAG seq19_ECOLI 1 6.22e-18 . CGTTGCTGACGAAAACAGCCATTTGCAGTATACTCCCGCCCT AATTTCTTTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGTKKMTGMVGRARRBWSCBRTTYDSRSHHTDCYSYCGCHST MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- seq41_ECOLI 3.4e-20 18_[+2]_40 seq36_ECOLI 6.2e-18 17_[+2]_41 seq19_ECOLI 6.2e-18 [+2]_58 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGTKKMTGMVGRARRBWSCBRTTYDSRSHHTDCYSYCGCHST MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGTKKMTGMVGRARRBWSCBRTTYDSRSHHTDCYSYCGCHST width=42 seqs=3 seq41_ECOLI ( 19) CGTGGCTGCGGAAAGTTCCGGTTTACACCCTGCCGTCGCTGT 1 seq36_ECOLI ( 18) CGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACT 1 seq19_ECOLI ( 1) CGTTGCTGACGAAAACAGCCATTTGCAGTATACTCCCGCCCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGTKKMTGMVGRARRBWSCBRTTYDSRSHHTDCYSYCGCHST MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 42 n= 2950 bayes= 9.59864 E= 1.4e+002 -823 226 -823 -823 -823 -823 223 -823 -823 -823 -823 180 -823 -823 165 22 -823 -823 165 22 18 167 -823 -823 -823 -823 -823 180 -823 -823 223 -823 18 167 -823 -823 18 67 65 -823 -823 -823 223 -823 118 -823 65 -823 177 -823 -823 -823 118 -823 65 -823 118 -823 65 -823 -823 67 65 22 18 -823 -823 122 -823 67 165 -823 -823 226 -823 -823 -823 67 65 22 118 -823 65 -823 -823 -823 -823 180 -823 -823 -823 180 -823 67 -823 122 18 -823 65 22 -823 167 65 -823 118 -823 65 -823 -823 167 65 -823 18 67 -823 22 18 67 -823 22 -823 -823 -823 180 18 -823 65 22 -823 226 -823 -823 -823 167 -823 22 -823 67 165 -823 -823 67 -823 122 -823 226 -823 -823 -823 -823 223 -823 -823 226 -823 -823 18 67 -823 22 -823 167 65 -823 -823 -823 -823 180 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGTKKMTGMVGRARRBWSCBRTTYDSRSHHTDCYSYCGCHST MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 42 nsites= 3 E= 1.4e+002 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.666667 0.333333 0.000000 0.000000 0.666667 0.333333 0.333333 0.666667 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.333333 0.666667 0.000000 0.000000 0.333333 0.333333 0.333333 0.000000 0.000000 0.000000 1.000000 0.000000 0.666667 0.000000 0.333333 0.000000 1.000000 0.000000 0.000000 0.000000 0.666667 0.000000 0.333333 0.000000 0.666667 0.000000 0.333333 0.000000 0.000000 0.333333 0.333333 0.333333 0.333333 0.000000 0.000000 0.666667 0.000000 0.333333 0.666667 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.333333 0.333333 0.333333 0.666667 0.000000 0.333333 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.333333 0.000000 0.666667 0.333333 0.000000 0.333333 0.333333 0.000000 0.666667 0.333333 0.000000 0.666667 0.000000 0.333333 0.000000 0.000000 0.666667 0.333333 0.000000 0.333333 0.333333 0.000000 0.333333 0.333333 0.333333 0.000000 0.333333 0.000000 0.000000 0.000000 1.000000 0.333333 0.000000 0.333333 0.333333 0.000000 1.000000 0.000000 0.000000 0.000000 0.666667 0.000000 0.333333 0.000000 0.333333 0.666667 0.000000 0.000000 0.333333 0.000000 0.666667 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.333333 0.333333 0.000000 0.333333 0.000000 0.666667 0.333333 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGTKKMTGMVGRARRBWSCBRTTYDSRSHHTDCYSYCGCHST MEME-2 regular expression -------------------------------------------------------------------------------- CGT[GT][GT][CA]TG[CA][ACG]G[AG]A[AG][AG][CGT][TA][GC]C[CGT][AG]TT[TC][AGT][CG][AG][CG][ACT][ACT]T[AGT]C[CT][GC][TC]CGC[ACT][CG]T -------------------------------------------------------------------------------- Time 3.97 secs. ******************************************************************************** ******************************************************************************** MOTIF CATWACCCC MEME-3 width = 9 sites = 4 llr = 48 E-value = 3.3e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CATWACCCC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :a:5a:::: pos.-specific C a::::aaaa probability G ::::::::: matrix T ::a5::::: bits 2.3 * **** 2.0 * **** 1.8 *** ***** 1.6 *** ***** Relative 1.4 *** ***** Entropy 1.1 *** ***** (17.4 bits) 0.9 *** ***** 0.7 ********* 0.5 ********* 0.2 ********* 0.0 --------- Multilevel CATAACCCC consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATWACCCC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------- seq47_ECOLI 35 2.80e-06 ACAGAAAAAC CATTACCCC TGAAAACCGA seq21_ECOLI 54 2.80e-06 GCTGTGTTAG CATTACCCC TTCGTGAATC seq35_ECOLI 56 5.67e-06 TGCTGAATAA CATAACCCC ATGATATATC seq31_ECOLI 67 5.67e-06 TACGTGGAGG CATAACCCC AACTTTTATA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATWACCCC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- seq47_ECOLI 2.8e-06 34_[+3]_57 seq21_ECOLI 2.8e-06 53_[+3]_38 seq35_ECOLI 5.7e-06 55_[+3]_36 seq31_ECOLI 5.7e-06 66_[+3]_25 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATWACCCC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CATWACCCC width=9 seqs=4 seq47_ECOLI ( 35) CATTACCCC 1 seq21_ECOLI ( 54) CATTACCCC 1 seq35_ECOLI ( 56) CATAACCCC 1 seq31_ECOLI ( 67) CATAACCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATWACCCC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 9 n= 4600 bayes= 10.1662 E= 3.3e+002 -865 226 -865 -865 177 -865 -865 -865 -865 -865 -865 180 77 -865 -865 80 177 -865 -865 -865 -865 226 -865 -865 -865 226 -865 -865 -865 226 -865 -865 -865 226 -865 -865 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATWACCCC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 9 nsites= 4 E= 3.3e+002 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.500000 0.000000 0.000000 0.500000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATWACCCC MEME-3 regular expression -------------------------------------------------------------------------------- CAT[AT]ACCCC -------------------------------------------------------------------------------- Time 5.75 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- seq1_ECOLI 4.89e-01 100 seq2_ECOLI 2.80e-01 100 seq3_ECOLI 6.84e-01 100 seq4_ECOLI 1.93e-01 100 seq5_ECOLI 3.42e-01 100 seq6_ECOLI 5.29e-01 100 seq7_ECOLI 1.05e-01 100 seq8_ECOLI 9.01e-01 100 seq9_ECOLI 8.00e-16 29_[+1(5.44e-20)]_23 seq10_ECOLI 1.06e-01 100 seq11_ECOLI 2.96e-01 100 seq12_ECOLI 2.29e-01 100 seq13_ECOLI 4.35e-01 100 seq14_ECOLI 9.89e-01 100 seq15_ECOLI 9.77e-01 100 seq16_ECOLI 9.36e-01 100 seq17_ECOLI 8.24e-16 28_[+1(1.13e-19)]_24 seq18_ECOLI 5.42e-01 100 seq19_ECOLI 6.29e-14 [+2(6.22e-18)]_58 seq20_ECOLI 9.56e-01 100 seq21_ECOLI 8.78e-04 53_[+3(2.80e-06)]_38 seq22_ECOLI 1.13e-01 100 seq23_ECOLI 1.23e-01 100 seq24_ECOLI 3.01e-01 100 seq25_ECOLI 2.59e-01 100 seq26_ECOLI 7.33e-01 100 seq27_ECOLI 8.80e-01 100 seq28_ECOLI 2.62e-01 100 seq29_ECOLI 3.70e-01 100 seq30_ECOLI 6.11e-01 100 seq31_ECOLI 7.99e-03 66_[+3(5.67e-06)]_25 seq32_ECOLI 2.81e-01 100 seq33_ECOLI 9.03e-01 100 seq34_ECOLI 1.40e-01 100 seq35_ECOLI 1.28e-02 55_[+3(5.67e-06)]_36 seq36_ECOLI 1.20e-13 17_[+2(6.22e-18)]_41 seq37_ECOLI 2.74e-01 100 seq38_ECOLI 3.02e-01 100 seq39_ECOLI 6.85e-01 100 seq40_ECOLI 3.88e-14 29_[+1(1.81e-17)]_23 seq41_ECOLI 2.54e-17 18_[+2(3.38e-20)]_40 seq42_ECOLI 1.58e-12 7_[+1(2.83e-16)]_45 seq43_ECOLI 5.77e-01 100 seq44_ECOLI 9.80e-01 100 seq45_ECOLI 7.13e-01 100 seq46_ECOLI 6.53e-01 100 seq47_ECOLI 9.90e-03 34_[+3(2.80e-06)]_57 seq48_ECOLI 9.25e-01 100 seq49_ECOLI 7.24e-01 100 seq50_ECOLI 7.80e-02 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kodomo ********************************************************************************