######################################## # Program: needle # Rundate: Wed 12 Mar 2008 16:39:53 # Commandline: needle # -asequence tktA.txt # -bsequence tktA-1.txt # -gapopen 25.0 # -gapextend 10.0 # -outfile needle_genes_5.txt # Align_format: srspair # Report_file: needle_genes_5.txt ######################################## #======================================= # # Aligned_sequences: 2 # 1: gene="tktA" # 2: gene="tktA-1", # Matrix: EDNAFULL # Gap_penalty: 25.0 # Extend_penalty: 10.0 # # Length: 2088 # Identity: 1489/2088 (71.3%) # Similarity: 1489/2088 (71.3%) # Gaps: 96/2088 ( 4.6%) # Score: 5313.0 # # #======================================= gene="tktA" 0 -------------------------------------------------- 0 gene="tktA-1" 1 ttgcagcagcaggggggctttgcgacaatagccgccactgattttccgca 50 gene="tktA" 1 -------------------------------------atgtcctcacgta 13 |||||.||.||.| gene="tktA-1" 51 tccattcatttcgcttacttcccatttaggagtcgacatgtcttctcgca 100 gene="tktA" 14 aagagcttgccaatgctattcgtgcgctgagcatggacgcagtacagaaa 63 ||.|.||||||||||||||||||||.|||||||||||||..||.||.||| gene="tktA-1" 101 aacaacttgccaatgctattcgtgccctgagcatggacggcgttcaaaaa 150 gene="tktA" 64 gccaaatccggtcacccgggggcccctatgggtatggctgacattgccga 113 ||.||.||.||.||||||||.|||||.|||||.|||||.||.||.||||| gene="tktA-1" 151 gctaactctggccacccgggagccccgatgggcatggcggatatcgccga 200 gene="tktA" 114 agtcctgtggcgtgatttcctgaaacacaacccgcagaatccgtcctggg 163 |||.|||||||||.....|.|.||.||||||||.||.||.||....|||| gene="tktA-1" 201 agtgctgtggcgttcacacttaaaccacaacccacaaaacccaaattggg 250 gene="tktA" 164 ctgaccgtgaccgcttcgtgctgtccaacggccacggctccatgctgatc 213 |||||||.|||||.|||||.|||||.||||||||||||||.||||||||. gene="tktA-1" 251 ctgaccgcgaccgtttcgtactgtctaacggccacggctctatgctgatt 300 gene="tktA" 214 tacagcctgctgcacctcaccggttacgatctgccgatggaagaactgaa 263 |||...|||||||||||.|.|||.||.||.|||.||||.||.||..|||| gene="tktA-1" 301 tactcgctgctgcacctgagcggctatgagctgtcgattgacgatttgaa 350 gene="tktA" 264 aaacttccgtcagctgcactctaaaactccgggtcacccggaaagtgggg 313 ||||||||||||.||||||||.|||||.|||||||||||.||| |..|| gene="tktA-1" 351 aaacttccgtcaactgcactcaaaaacaccgggtcacccagaa--tacgg 398 gene="tktA" 314 ttacaccgctgggtgtggaaaccaccaccggtccgctgggtcagggtatt 363 |||| .|.|.|||..|.|||||.||.||.||.||.||.||.||.||.||. gene="tktA-1" 399 ttac-gcaccgggcatcgaaactactacgggcccactcggccaaggcatc 447 gene="tktA" 364 gccaacgcagtcggtatggcgattgcagaaaaaacgctggcggcgcagtt 413 .||||.||.||.||||||||||||||.||.|||.|.|||||||||||||| gene="tktA-1" 448 accaatgccgtaggtatggcgattgctgagaaagcactggcggcgcagtt 497 gene="tktA" 414 taaccgtccgggccacgacattgtcgaccactacacctacgccttcatgg 463 .|||...|||||.||||||||.||.|||||||.|||.||.|..||||||| gene="tktA-1" 498 caacaaaccgggtcacgacatcgttgaccacttcacttatgtgttcatgg 547 gene="tktA" 464 gcgacggctgcatgatggaaggcatctcccacgaagtttgctctctggcg 513 |.||||||||..||||||||||.|||||.|||||||..||.||.|||||| gene="tktA-1" 548 gggacggctgtttgatggaaggtatctcgcacgaagcgtgttcactggcg 597 gene="tktA" 514 ggtacgctgaagctgggtaaactgattgcattctacgatgacaacggtat 563 |||||||||...|||||.||||||||||||||||..|||||||||||||| gene="tktA-1" 598 ggtacgctgggtctgggcaaactgattgcattctgggatgacaacggtat 647 gene="tktA" 564 ttctatcgatggtcacgttgaaggctggttcaccgacgacaccgcaatgc 613 |||||||||.||||||||.||||||||||||.|.||||||||..|||..| gene="tktA-1" 648 ttctatcgacggtcacgtggaaggctggttctcagacgacacaccaaaac 697 gene="tktA" 614 gtttcgaagcttacggctggcacgttattcgcgacatcgacggtcatgac 663 ||||.|||||.|||||||||||.||.||.|..|...|.||.|||||.||. gene="tktA-1" 698 gttttgaagcgtacggctggcatgtcatccctgcggttgatggtcacgat 747 gene="tktA" 664 gcggcatctatcaaacgcgcagtagaagaagcgcgcgcagtgactgacaa 713 ||.|...|.||.||....||..|.||||..|||...||||..||...... gene="tktA-1" 748 gcagatgcaattaacgctgcgattgaagcggcgaaagcagaaacgtctcg 797 gene="tktA" 714 accttccctgctgatgtgcaaaaccatcatcggtttcggttccccgaaca 763 .||..|.|||.|......|||||||||||||||||||||.||.||.|||| gene="tktA-1" 798 cccaacgctgatttgtaccaaaaccatcatcggtttcggctctccaaaca 847 gene="tktA" 764 aagccggtacccacgactcccacggtgcgccgctgggcgacgctgaaatt 813 ||||.|||.|.|||||||..|||||.||.||.||||||.|||.||||||. gene="tktA-1" 848 aagcgggttcacacgactgtcacggcgcaccactgggcaacgatgaaatc 897 gene="tktA" 814 gccctgacccgcgaacaactgggctggaaatatgcgccgttcgaaatccc 863 .......|.||.|||....||||.|||.||||.||.|||||.|||||||| gene="tktA-1" 898 aaagccgcgcgtgaattcttgggttgggaatacgctccgtttgaaatccc 947 gene="tktA" 864 gtctgaaatctatgctcagtgggatgcgaaagaagcaggccaggcgaaag 913 ..|.||.||.||||||..|||||||||.|||.||||||||......|||| gene="tktA-1" 948 tgcggacatttatgctgcgtgggatgcaaaacaagcaggcgcaagcaaag 997 gene="tktA" 914 aatccgcatggaacgagaaattcgctgcttacgcgaaagcttatccgcag 963 ||.||||.|||||.|||||||||||.|||||||||||||||||.||.... gene="tktA-1" 998 aagccgcttggaatgagaaattcgccgcttacgcgaaagcttacccagct 1047 gene="tktA" 964 gaagccgctgaatttacccgccgtatgaaaggcgaaatgccgtctgactt 1013 |||||.|||||||..|..|||||..|....|||||..||||..|..|.|. gene="tktA-1" 1048 gaagctgctgaatacaaacgccgcgtagcgggcgagctgccagcgaattg 1097 gene="tktA" 1014 cgacgctaaagcgaaagagttcatcgctaaactgcaggctaatccggcga 1063 .||.||...|.|.|..|||.|.||||||||.|||||.|||||.||.||.| gene="tktA-1" 1098 ggaagccgcaaccagcgagattatcgctaacctgcaagctaaccctgcca 1147 gene="tktA" 1064 aaatcgccagccgtaaagcgtctcagaatgctatcgaagcgttcggtccg 1113 |.|||||....||||||||.||.||.|||||..|.|||||||||||.... gene="tktA-1" 1148 acatcgcatcgcgtaaagcatcacaaaatgcgctggaagcgttcggcaaa 1197 gene="tktA" 1114 ctgttgccggaattcctcggcggttctgctgacctggcgccgtctaacct 1163 |||.||||.|||||..|.||.||||||||||||.|||||||.|||||||| gene="tktA-1" 1198 ctgctgccagaatttatgggtggttctgctgacttggcgccttctaacct 1247 gene="tktA" 1164 gaccctgtggtctggttctaaagcaat--caac-gaagatgctgcgggta 1210 .|||.||||||||||.|||||..||.| ||.| ||||||||..|.||.| gene="tktA-1" 1248 caccatgtggtctggctctaagtcactgacagcagaagatgcgtcaggca 1297 gene="tktA" 1211 actacatccactacggtgttcgcgagttcggtatgaccgcgattgctaac 1260 |||||||||||||||||||.||.|||||.||||||||.||.||....||| gene="tktA-1" 1298 actacatccactacggtgtgcgtgagtttggtatgacggccatcatcaac 1347 gene="tktA" 1261 ggtatctccctgcacggtggcttcctgccgtacacctccaccttcctgat 1310 ||||||.|.||||||||.||.||..|.||.|||....|.||||||||||| gene="tktA-1" 1348 ggtatcgcgctgcacggcggttttgtcccttacggtgcaaccttcctgat 1397 gene="tktA" 1311 gttcgtggaatacgcacgtaacgccgtacgtatggctgcgctgatgaaac 1360 |||..||||||||||.||||||||..|.||||||||.||.|||||||||. gene="tktA-1" 1398 gtttatggaatacgcgcgtaacgcgatgcgtatggcagcactgatgaaag 1447 gene="tktA" 1361 agcgtcaggtgatggtttacacccacgactccatcggtctgggcgaagac 1410 .||...|..|....||.|||||.||.|||||.||.||||||||.|||||. gene="tktA-1" 1448 tgcaaaacatccaagtgtacacgcatgactcgattggtctgggtgaagat 1497 gene="tktA" 1411 gggccgactcaccagccggttgagcaggtcgcttctctgcgcgtaacccc 1460 ||.||.||||||||.||.||||||||..|||||||||||||..|.||.|| gene="tktA-1" 1498 ggcccaactcaccaacccgttgagcaaatcgcttctctgcgtatgacacc 1547 gene="tktA" 1461 gaacatgtctacatggcgtccgtgtgaccaggttgaatccgcggtcgcgt 1510 .||||||...||||||||.||.||||||||.||.|||||.||.||.||.| gene="tktA-1" 1548 aaacatgagcacatggcgcccatgtgaccaagtggaatcggcagtggctt 1597 gene="tktA" 1511 ggaaatacggtgttgagcgtcaggacggcccgaccgcactgatcctctcc 1560 |||||...|...|.||||||.|.||.|..||..|.||.|||||..||||. gene="tktA-1" 1598 ggaaactggccatcgagcgtaaagatgcgccatctgcgctgattttctcg 1647 gene="tktA" 1561 cgtcagaacctggcgcagcaggaacgaactgaagagcaactggcaaacat 1610 |||||.|||||.||||||||...|||.|..|.|||||||.||||.||||| gene="tktA-1" 1648 cgtcaaaacctagcgcagcaaccacgcagcgcagagcaagtggcgaacat 1697 gene="tktA" 1611 cgcgcgcggtggttatgtgctgaaagactgcgccggtcagccggaactga 1660 |||....||||||||..|.||||||||.||.||.||.||.||.||||||| gene="tktA-1" 1698 cgctaagggtggttacatcctgaaagattgtgcaggccaacctgaactga 1747 gene="tktA" 1661 ttttcatcgctaccggttcagaagttgaactggctgttgctgcctacgaa 1710 |..|.||.||.||.||.||.|||||.|||||.||.|||||.||.|||||. gene="tktA-1" 1748 tcctgattgcgactggctctgaagtggaactcgcggttgccgcttacgag 1797 gene="tktA" 1711 aaactgactgccgaaggcgtgaaagcgcgcgtggtgtccatgtcgtctac 1760 .||||||..|||||||||......|..|||||||||||.|||.|.||.|| gene="tktA-1" 1798 caactgagcgccgaaggcaaagcggttcgcgtggtgtctatgccatcaac 1847 gene="tktA" 1761 cgacgcatttgacaagcaggatgctgcttaccgtgaatccgtactgccga 1810 .||.||.|||||.|||||.|||||.||||||||||||.||||.|||||.. gene="tktA-1" 1848 ggatgcgtttgataagcaagatgccgcttaccgtgaagccgttctgccag 1897 gene="tktA" 1811 aagcggttactgcacgcgttgctgtagaagcgggtattgctgactactgg 1860 ..||.||.|||...||..|.||..|.||||||||||||||.||||.|||| gene="tktA-1" 1898 ccgctgtgactaagcgtatcgcgattgaagcgggtattgcagacttctgg 1947 gene="tktA" 1861 tacaagtatgttggcctgaacggtgctatcgtcggtatgaccaccttcgg 1910 ||||||||.||.|||.|...||||...|||.||||||||||||.|||||| gene="tktA-1" 1948 tacaagtacgtcggctttggcggtcgcatcatcggtatgaccagcttcgg 1997 gene="tktA" 1911 tgaatctgctccggcagagctgctgtttgaagagttcggcttcactgttg 1960 .|||||.||.||.||.|....||||||..||..|||.||.|||||...|| gene="tktA-1" 1998 cgaatcagcaccagccggtgagctgttcaaactgtttggtttcacgactg 2047 gene="tktA" 1961 ataacgttgttgcgaaagcaaaagaactgctgtaa--- 1995 |.|||||.||.....||||.||||||||||||... gene="tktA-1" 2048 aaaacgtagtgaaacaagccaaagaactgctggcgtaa 2085 #--------------------------------------- #---------------------------------------