######################################## # Program: needle # Rundate: Sun 24 Feb 2008 16:28:03 # Commandline: needle # -asequence tktA.txt # -bsequence tktA-1.txt # Align_format: srspair # Report_file: tkta.needle ######################################## #======================================= # # Aligned_sequences: 2 # 1: gene="tktA" # 2: gene="tktA-1" # Matrix: EDNAFULL # Gap_penalty: 10.0 # Extend_penalty: 0.5 # # Length: 2141 # Identity: 1538/2141 (71.8%) # Similarity: 1538/2141 (71.8%) # Gaps: 202/2141 ( 9.4%) # Score: 5610.5 # # #======================================= gene="tktA" 0 -------------------------------------------------- 0 gene="tktA-1" 1 ttgcagcagcaggggggctttgcgacaatagccgccactgattttccgca 50 gene="tktA" 1 -------------------------------------atgtcctcacgta 13 |||||.||.||.| gene="tktA-1" 51 tccattcatttcgcttacttcccatttaggagtcgacatgtcttctcgca 100 gene="tktA" 14 aagagcttgccaatgctattcgtgcgctgagcatggacgcagtacagaaa 63 ||.|.||||||||||||||||||||.|||||||||||||..||.||.||| gene="tktA-1" 101 aacaacttgccaatgctattcgtgccctgagcatggacggcgttcaaaaa 150 gene="tktA" 64 gccaaatccggtcacccgggggcccctatgggtatggctgacattgccga 113 ||.||.||.||.||||||||.|||||.|||||.|||||.||.||.||||| gene="tktA-1" 151 gctaactctggccacccgggagccccgatgggcatggcggatatcgccga 200 gene="tktA" 114 agtcctgtggcgtgatttc---ctgaaa-cacaacccgcagaatccgtcc 159 |||.|||||||| ||| ||.||| ||||||||.||.||.||.... gene="tktA-1" 201 agtgctgtggcg----ttcacacttaaaccacaacccacaaaacccaaat 246 gene="tktA" 160 tgggctgaccgtgaccgcttcgtgctgtccaacggccacggctccatgct 209 |||||||||||.|||||.|||||.|||||.||||||||||||||.||||| gene="tktA-1" 247 tgggctgaccgcgaccgtttcgtactgtctaacggccacggctctatgct 296 gene="tktA" 210 gatctacagcctgctgcacctcaccggttacgatctgccgatggaagaac 259 |||.|||...|||||||||||.|.|||.||.||.|||.||||.||.||.. gene="tktA-1" 297 gatttactcgctgctgcacctgagcggctatgagctgtcgattgacgatt 346 gene="tktA" 260 tgaaaaacttccgtcagctgcactctaaaactccgggtcacccggaaagt 309 ||||||||||||||||.||||||||.|||||.|||||||||||.||| | gene="tktA-1" 347 tgaaaaacttccgtcaactgcactcaaaaacaccgggtcacccagaa--t 394 gene="tktA" 310 ggggtta--caccgctgggtgtggaaaccaccaccggtccgctgggtcag 357 ..||||| |||| |||..|.|||||.||.||.||.||.||.||.||. gene="tktA-1" 395 acggttacgcacc---gggcatcgaaactactacgggcccactcggccaa 441 gene="tktA" 358 ggtattgccaacgcagtcggtatggcgattgcagaaaaaacgctggcggc 407 ||.||..||||.||.||.||||||||||||||.||.|||.|.|||||||| gene="tktA-1" 442 ggcatcaccaatgccgtaggtatggcgattgctgagaaagcactggcggc 491 gene="tktA" 408 gcagtttaaccgtccgggccacgacattgtcgaccactacacctacgcct 457 ||||||.|||...|||||.||||||||.||.|||||||.|||.||.|..| gene="tktA-1" 492 gcagttcaacaaaccgggtcacgacatcgttgaccacttcacttatgtgt 541 gene="tktA" 458 tcatgggcgacggctgcatgatggaaggcatctcccacgaagtttgctct 507 |||||||.||||||||..||||||||||.|||||.|||||||..||.||. gene="tktA-1" 542 tcatgggggacggctgtttgatggaaggtatctcgcacgaagcgtgttca 591 gene="tktA" 508 ctggcgggtacgctgaagctgggtaaactgattgcattctacgatgacaa 557 |||||||||||||||...|||||.||||||||||||||||..|||||||| gene="tktA-1" 592 ctggcgggtacgctgggtctgggcaaactgattgcattctgggatgacaa 641 gene="tktA" 558 cggtatttctatcgatggtcacgttgaaggctggttcaccgacgacaccg 607 |||||||||||||||.||||||||.||||||||||||.|.||||||||.. gene="tktA-1" 642 cggtatttctatcgacggtcacgtggaaggctggttctcagacgacacac 691 gene="tktA" 608 caatgcgtttcgaagcttacggctggcacgttattc--gcgacatcgacg 655 |||..|||||.|||||.|||||||||||.||.||.| ||| .|.||.| gene="tktA-1" 692 caaaacgttttgaagcgtacggctggcatgtcatccctgcg--gttgatg 739 gene="tktA" 656 gtcatgacgcggcat-ctatcaaacgc-gcagtagaagaagcgcgcgcag 703 ||||.||.||.| || |.|| .||||| ||..|.||||..|||...|||| gene="tktA-1" 740 gtcacgatgcag-atgcaat-taacgctgcgattgaagcggcgaaagcag 787 gene="tktA" 704 tgactgacaaacct---tccc--tgctgatgtg---caaaaccatcatcg 745 ||||.| .||| .||||||.|| |||||||||||||| gene="tktA-1" 788 --------aaacgtctcgcccaacgctgatttgtaccaaaaccatcatcg 829 gene="tktA" 746 gtttcggttccccgaacaaagccggtacccacgactcccacggtgcgccg 795 |||||||.||.||.||||||||.|||.|.|||||||..|||||.||.||. gene="tktA-1" 830 gtttcggctctccaaacaaagcgggttcacacgactgtcacggcgcacca 879 gene="tktA" 796 ctgggcgacgctgaaattgccctgacccgc----gaacaactgggctgga 841 ||||||.|||.|||||| |..|.|||| |||....||||.|||. gene="tktA-1" 880 ctgggcaacgatgaaat----caaagccgcgcgtgaattcttgggttggg 925 gene="tktA" 842 aatatgcgccgttcgaaatcccgtctgaaatctatgctcagtgggatgcg 891 ||||.||.|||||.||||||||..|.||.||.||||||..|||||||||. gene="tktA-1" 926 aatacgctccgtttgaaatccctgcggacatttatgctgcgtgggatgca 975 gene="tktA" 892 aaagaagcaggc-caggcgaaagaatccgcatggaacgagaaattcgctg 940 |||.|||||||| ||.|| ||||||.||||.|||||.|||||||||||.| gene="tktA-1" 976 aaacaagcaggcgcaagc-aaagaagccgcttggaatgagaaattcgccg 1024 gene="tktA" 941 cttacgcgaaagcttatccgcag--gaagccgctgaatttacccgccgta 988 |||||||||||||||| |.||| |||||.|||||||..|..|||||.. gene="tktA-1" 1025 cttacgcgaaagctta--cccagctgaagctgctgaatacaaacgccgcg 1072 gene="tktA" 989 tgaaaggcgaaatgccgtctgacttcgacgctaaag-cgaaa-----gag 1032 |....|||||..||||..| ||.||.| .||| ||.|| ||| gene="tktA-1" 1073 tagcgggcgagctgccagc-gaattgg-----gaagccgcaaccagcgag 1116 gene="tktA" 1033 ttcatcgctaaactgcaggctaatccggcgaaaatcgccagc-cgtaaag 1081 .|.||||||||.|||||.|||||.||.||.||.|||| ||.| ||||||| gene="tktA-1" 1117 attatcgctaacctgcaagctaaccctgccaacatcg-catcgcgtaaag 1165 gene="tktA" 1082 cgtctcagaatgctatcgaagcgttcggtccgctgttgccggaattcctc 1131 |.||.||.|||||..|.|||||||||||....|||.||||.|||||..|. gene="tktA-1" 1166 catcacaaaatgcgctggaagcgttcggcaaactgctgccagaatttatg 1215 gene="tktA" 1132 ggcggttctgctgacctggcgccgtctaacctgaccctgtggtctggttc 1181 ||.||||||||||||.|||||||.||||||||.|||.||||||||||.|| gene="tktA-1" 1216 ggtggttctgctgacttggcgccttctaacctcaccatgtggtctggctc 1265 gene="tktA" 1182 taaagcaat--caac-gaagatgctgcgggtaactacatccactacggtg 1228 |||..||.| ||.| ||||||||..|.||.||||||||||||||||||| gene="tktA-1" 1266 taagtcactgacagcagaagatgcgtcaggcaactacatccactacggtg 1315 gene="tktA" 1229 ttcgcgagttcggtatgaccgcgattgctaacggtatctccctgcacggt 1278 |.||.|||||.||||||||.||.||....|||||||||.|.||||||||. gene="tktA-1" 1316 tgcgtgagtttggtatgacggccatcatcaacggtatcgcgctgcacggc 1365 gene="tktA" 1279 ggcttcctgccgtacacctccaccttcctgatgttcgtggaatacgcacg 1328 ||.||..|.||.|||....|.||||||||||||||..||||||||||.|| gene="tktA-1" 1366 ggttttgtcccttacggtgcaaccttcctgatgtttatggaatacgcgcg 1415 gene="tktA" 1329 taacgccgtacgtatggctgcgctgatg--------aaacagcgtcaggt 1370 ||||||..|.||||||||.||.|||||| |||||.| ||.|| gene="tktA-1" 1416 taacgcgatgcgtatggcagcactgatgaaagtgcaaaacatc--caagt 1463 gene="tktA" 1371 gatggtttacacccacgactccatcggtctgggcgaagacgggccgactc 1420 | |||||.||.|||||.||.||||||||.|||||.||.||.|||| gene="tktA-1" 1464 g------tacacgcatgactcgattggtctgggtgaagatggcccaactc 1507 gene="tktA" 1421 accagccggttgagcaggtcgcttctctgcgcgtaaccccgaacatgtct 1470 ||||.||.||||||||..|||||||||||||..|.||.||.||||||... gene="tktA-1" 1508 accaacccgttgagcaaatcgcttctctgcgtatgacaccaaacatgagc 1557 gene="tktA" 1471 acatggcgtccgtgtgaccaggttgaatccgcggtcgcgtggaaatacgg 1520 ||||||||.||.||||||||.||.|||||.||.||.||.|||||| . gene="tktA-1" 1558 acatggcgcccatgtgaccaagtggaatcggcagtggcttggaaa----c 1603 gene="tktA" 1521 tg----ttgagcgtcaggacggcccgaccgcactgatcctctcccgtcag 1566 || |.||||||.|.||.|..||..|.||.|||||..||||.|||||. gene="tktA-1" 1604 tggccatcgagcgtaaagatgcgccatctgcgctgattttctcgcgtcaa 1653 gene="tktA" 1567 aacctggcgcagcaggaacgaactgaagagcaactggcaaacatcgcgcg 1616 |||||.||||||||...|||.|..|.|||||||.||||.||||||||... gene="tktA-1" 1654 aacctagcgcagcaaccacgcagcgcagagcaagtggcgaacatcgctaa 1703 gene="tktA" 1617 cggtggttatgtgctgaaagactgcgccggtcagccggaactgattttca 1666 .||||||||..|.||||||||.||.||.||.||.||.||||||||..|.| gene="tktA-1" 1704 gggtggttacatcctgaaagattgtgcaggccaacctgaactgatcctga 1753 gene="tktA" 1667 tcgctaccggttcagaagttgaactggctgttgctgcctacgaaaaactg 1716 |.||.||.||.||.|||||.|||||.||.|||||.||.|||||..||||| gene="tktA-1" 1754 ttgcgactggctctgaagtggaactcgcggttgccgcttacgagcaactg 1803 gene="tktA" 1717 actgccgaaggcgtgaaagcg---cgcgtggtgtccatgtcgtctaccga 1763 |..||||||||| |||||| |||||||||||.|||.|.||.||.|| gene="tktA-1" 1804 agcgccgaaggc---aaagcggttcgcgtggtgtctatgccatcaacgga 1850 gene="tktA" 1764 cgcatttgacaagcaggatgctgcttaccgtgaatccgtactgccgaaag 1813 .||.|||||.|||||.|||||.||||||||||||.||||.|||||....| gene="tktA-1" 1851 tgcgtttgataagcaagatgccgcttaccgtgaagccgttctgccagccg 1900 gene="tktA" 1814 cggttactgcacgcg--ttgctgtagaagcgggtattgctgactactggt 1861 |.||.||| |.||| |.||..|.||||||||||||||.||||.||||| gene="tktA-1" 1901 ctgtgact--aagcgtatcgcgattgaagcgggtattgcagacttctggt 1948 gene="tktA" 1862 acaagtatgttggcctgaacggt-gctatcgtcggtatgaccaccttcgg 1910 |||||||.||.|||.|...|||| || |||.||||||||||||.|||||| gene="tktA-1" 1949 acaagtacgtcggctttggcggtcgc-atcatcggtatgaccagcttcgg 1997 gene="tktA" 1911 tgaatctgctccggcagagctgctgtttgaagagttcggcttcactgttg 1960 .|||||.||.||.||.|....||||||..||..|||.||.|||||...|| gene="tktA-1" 1998 cgaatcagcaccagccggtgagctgttcaaactgtttggtttcacgactg 2047 gene="tktA" 1961 ataacgttgttgcga---aagcaaaagaactgct---gtaa 1995 |.|||||.|| || ||||.||||||||||| |||| gene="tktA-1" 2048 aaaacgtagt---gaaacaagccaaagaactgctggcgtaa 2085 #--------------------------------------- #---------------------------------------