Strand I Strand II Helix 1 (0.027) ....>B:.501_:[..C]C-----G[..G]:.573_:B<.... (0.018) | 2 (0.019) ....>B:.502_:[..C]C-----G[..G]:.572_:B<.... (0.017) | 3 (0.022) ....>B:.503_:[..G]G-----C[..C]:.571_:B<.... (0.022) | 4 (0.030) ....>B:.504_:[..G]G-----C[..C]:.570_:B<.... (0.016) | 5 (0.010) ....>B:.505_:[..C]C-----G[..G]:.569_:B<.... (0.030) | 6 (0.023) ....>B:.506_:[..G]G-----C[..C]:.568_:B<.... (0.012) | 7 (0.025) ....>B:.507_:[..G]G-----C[..C]:.567_:B<.... (0.016) | 8 (0.018) ....>B:.550_:[..G]G-----C[..C]:.566_:B<.... (0.010) | 9 (0.020) ....>B:.551_:[..C]C-----G[..G]:.565_:B<.... (0.031) | 10 (0.022) ....>B:.552_:[..U]U-*---G[..G]:.564_:B<.... (0.027) | 11 (0.021) ....>B:.553_:[..G]G-----C[..C]:.563_:B<.... (0.017) | 12 (0.029) ....>B:.554_:[..G]G-----C[..C]:.562_:B<.... (0.030) | 13 (0.016) ....>B:.555_:[..U]U-**--A[..A]:.559_:B<.... (0.015) | 14 (0.009) ....>B:.556_:[..U]U-**+-G[..G]:.519_:B<.... (0.027) x 15 (0.021) ....>B:.537_:[..A]A-**--U[..U]:.534_:B<.... (0.047) | 16 (0.024) ....>B:.539_:[..A]A-**--C[..C]:.533_:B<.... (0.008) | 17 (0.015) ....>B:.540_:[..U]U-----A[..A]:.532_:B<.... (0.014) | 18 (0.016) ....>B:.541_:[..C]C-----G[..G]:.531_:B<.... (0.016) | 19 (0.024) ....>B:.542_:[..C]C-----G[..G]:.530_:B<.... (0.024) | 20 (0.028) ....>B:.543_:[..G]G-----C[..C]:.529_:B<.... (0.015) | 21 (0.013) ....>B:.544_:[..C]C-----G[..G]:.528_:B<.... (0.023) | 22 (0.020) ....>B:.545_:[..A]A-**--G[..G]:.527_:B<.... (0.020) | 23 (0.013) ....>B:.510_:[..G]G-----C[..C]:.526_:B<.... (0.008) | 24 (0.012) ....>B:.511_:[..U]U-----A[..A]:.525_:B<.... (0.015) | 25 (0.005) ....>B:.512_:[..U]U-----A[..A]:.524_:B<.... (0.011) | 26 (0.008) ....>B:.513_:[..C]C-----G[..G]:.523_:B<.... (0.029) | 27 (0.017) ....>B:.514_:[..A]A-**--U[..U]:.508_:B<.... (0.016) | 28 (0.011) ....>B:.515_:[..G]G-**+-C[..C]:.549_:B<.... (0.020) x 29 (0.030) ....>B:.520_:[..G]G-----C[..C]:.557_:B<.... (0.019) + Note: This structure contains 8[7] non-Watson-Crick base-pairs. **************************************************************************** Detailed H-bond information: atom-name pair and length [ O N] 1 C-----G [3] O2 - N2 2.63 N3 - N1 2.82 N4 - O6 3.00 2 C-----G [3] O2 - N2 2.64 N3 - N1 2.78 N4 - O6 3.01 3 G-----C [3] O6 - N4 2.86 N1 - N3 2.84 N2 - O2 2.75 4 G-----C [3] O6 - N4 2.84 N1 - N3 2.83 N2 - O2 2.85 5 C-----G [3] O2 - N2 2.65 N3 - N1 2.82 N4 - O6 3.00 6 G-----C [3] O6 - N4 3.01 N1 - N3 2.89 N2 - O2 2.75 7 G-----C [3] O6 - N4 2.74 N1 - N3 2.83 N2 - O2 2.93 8 G-----C [3] O6 - N4 2.94 N1 - N3 2.96 N2 - O2 2.87 9 C-----G [3] O2 - N2 2.73 N3 - N1 2.80 N4 - O6 2.81 10 U-*---G [2] O2 - N1 2.69 N3 - O6 2.79 11 G-----C [3] O6 - N4 2.88 N1 - N3 2.85 N2 - O2 2.74 12 G-----C [3] O6 - N4 2.78 N1 - N3 2.97 N2 - O2 3.07 13 U-**--A [3] O2 - N6 2.88 N3 - N7 2.68 O4 * OP2 3.50 14 U-**+-G [2] O2'- O6 3.40 O2 - N1 2.66 15 A-**--U [2] OP2* O4 2.96 N7 - N3 3.49 16 A-**--C [1] N6 - O2 2.95 17 U-----A [2] N3 - N1 2.64 O4 - N6 3.20 18 C-----G [3] O2 - N2 3.58 N3 - N1 2.96 N4 - O6 2.32 19 C-----G [2] O2 - N2 2.71 N3 * O6 2.68 20 G-----C [3] O6 - N4 3.24 N1 - N3 2.98 N2 - O2 2.78 21 C-----G [3] O2 - N2 2.83 N3 - N1 2.74 N4 - O6 2.65 22 A-**--G [2] N6 - O6 2.51 N1 - N1 2.68 23 G-----C [3] O6 - N4 2.95 N1 - N3 2.95 N2 - O2 2.77 24 U-----A [2] N3 - N1 2.57 O4 - N6 2.77 25 U-----A [2] N3 - N1 2.73 O4 - N6 2.55 26 C-----G [3] O2 - N2 2.42 N3 - N1 2.73 N4 - O6 2.96 27 A-**--U [2] N7 - N3 2.53 N6 - O2 2.55 28 G-**+-C [2] N1 - O2 2.66 N2 - N3 2.86 29 G-----C [3] O6 - N4 3.33 N1 - N3 3.23 N2 - O2 3.17 ****************************************************************************