BLASTN 2.12.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: genomic.fna 75 sequences; 2,408,695,688 total letters Query= CP014225.1:complement(926804-928359)|16S_rRNA|Escherichia coli str. K-12 substr. MG1655 strain K-12 Length=1556 Score E Sequences producing significant alignments: (Bits) Value NC_056673.1 Panthera tigris isolate Pti1 chromosome E1, P.tigris_... 56.3 8e-05 NC_056660.1 Panthera tigris isolate Pti1 chromosome A1, P.tigris_... 43.7 0.49 NC_056665.1 Panthera tigris isolate Pti1 chromosome B3, P.tigris_... 41.9 1.7 NC_010642.1 Panthera tigris mitochondrion, complete genome 40.1 6.0 NC_056676.1 Panthera tigris isolate Pti1 chromosome F2, P.tigris_... 40.1 6.0 NC_056678.1 Panthera tigris isolate Pti1 chromosome F3, P.tigris_... 39.2 6.0 >NC_056673.1 Panthera tigris isolate Pti1 chromosome E1, P.tigris_Pti1_mat1.1, whole genome shotgun sequence Length=61289036 Score = 56.3 bits (61), Expect = 8e-05 Identities = 38/43 (88%), Gaps = 0/43 (0%) Strand=Plus/Plus Query 1494 AAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCA 1536 ||||||||||||||| ||||||| |||||||||| |||||| Sbjct 12793436 AAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCA 12793478 Score = 56.3 bits (61), Expect = 8e-05 Identities = 38/43 (88%), Gaps = 0/43 (0%) Strand=Plus/Plus Query 1494 AAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCA 1536 ||||||||||||||| ||||||| |||||||||| |||||| Sbjct 12829595 AAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCA 12829637 Score = 56.3 bits (61), Expect = 8e-05 Identities = 38/43 (88%), Gaps = 0/43 (0%) Strand=Plus/Plus Query 1494 AAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCA 1536 ||||||||||||||| ||||||| |||||||||| |||||| Sbjct 12862103 AAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCA 12862145 Score = 56.3 bits (61), Expect = 8e-05 Identities = 38/43 (88%), Gaps = 0/43 (0%) Strand=Plus/Plus Query 1494 AAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCA 1536 ||||||||||||||| ||||||| |||||||||| |||||| Sbjct 12898259 AAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCA 12898301 Score = 44.6 bits (48), Expect = 0.14 Identities = 30/34 (88%), Gaps = 0/34 (0%) Strand=Plus/Plus Query 451 GGAAGGGAGTAAAGTTAATACCTTTGCTCATTGA 484 ||||||||||||| ||| | ||||||||||||| Sbjct 36841303 GGAAGGGAGTAAAATTATTCACTTTGCTCATTGA 36841336 Score = 40.1 bits (43), Expect = 6.0 Identities = 71/104 (68%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 1306 GGATTGGAGTCTGCAACTCGACTCCATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAA 1365 |||| || | ||||| | | ||||||| ||||| | ||||| | || ||| || Sbjct 12793217 GGATCGGGGATTGCAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAA 12793276 Query 1366 TGCCACGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTC 1409 || ||| || || || | | |||||||||||||||||| Sbjct 12793277 GCTTGCGTTGATTAAGTCCCTGCCCTTTGTACACACCGCCCGTC 12793320 Score = 40.1 bits (43), Expect = 6.0 Identities = 71/104 (68%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 1306 GGATTGGAGTCTGCAACTCGACTCCATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAA 1365 |||| || | ||||| | | ||||||| ||||| | ||||| | || ||| || Sbjct 12829376 GGATCGGGGATTGCAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAA 12829435 Query 1366 TGCCACGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTC 1409 || ||| || || || | | |||||||||||||||||| Sbjct 12829436 GCTTGCGTTGATTAAGTCCCTGCCCTTTGTACACACCGCCCGTC 12829479 Score = 40.1 bits (43), Expect = 6.0 Identities = 71/104 (68%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 1306 GGATTGGAGTCTGCAACTCGACTCCATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAA 1365 |||| || | ||||| | | ||||||| ||||| | ||||| | || ||| || Sbjct 12861884 GGATCGGGGATTGCAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAA 12861943 Query 1366 TGCCACGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTC 1409 || ||| || || || | | |||||||||||||||||| Sbjct 12861944 GCTTGCGTTGATTAAGTCCCTGCCCTTTGTACACACCGCCCGTC 12861987 Score = 40.1 bits (43), Expect = 6.0 Identities = 71/104 (68%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 1306 GGATTGGAGTCTGCAACTCGACTCCATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAA 1365 |||| || | ||||| | | ||||||| ||||| | ||||| | || ||| || Sbjct 12898040 GGATCGGGGATTGCAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAA 12898099 Query 1366 TGCCACGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTC 1409 || ||| || || || | | |||||||||||||||||| Sbjct 12898100 GCTTGCGTTGATTAAGTCCCTGCCCTTTGTACACACCGCCCGTC 12898143 >NC_056660.1 Panthera tigris isolate Pti1 chromosome A1, P.tigris_Pti1_mat1.1, whole genome shotgun sequence Length=238220823 Score = 43.7 bits (47), Expect = 0.49 Identities = 34/41 (83%), Gaps = 0/41 (0%) Strand=Plus/Minus Query 1494 AAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGAT 1534 ||||||||||||||||| | || |||| ||| | |||||| Sbjct 88662224 AAGTCGTAACAAGGTAAGCATACAGGAAACTGTGCTTGGAT 88662184 >NC_056665.1 Panthera tigris isolate Pti1 chromosome B3, P.tigris_Pti1_mat1.1, whole genome shotgun sequence Length=146942463 Score = 41.9 bits (45), Expect = 1.7 Identities = 24/25 (96%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 407 TGTATGAAGAAGGCCTTCGGGTTGT 431 |||||||||||||||| |||||||| Sbjct 132636882 TGTATGAAGAAGGCCTCCGGGTTGT 132636906 Score = 39.2 bits (42), Expect = 6.0 Identities = 21/21 (100%), Gaps = 0/21 (0%) Strand=Plus/Plus Query 1473 TTGTGATTCATGACTGGGGTG 1493 ||||||||||||||||||||| Sbjct 90328019 TTGTGATTCATGACTGGGGTG 90328039 >NC_010642.1 Panthera tigris mitochondrion, complete genome Length=16990 Score = 40.1 bits (43), Expect = 6.0 Identities = 35/44 (80%), Gaps = 0/44 (0%) Strand=Plus/Plus Query 1494 AAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCAC 1537 ||||||||||||||||| | || |||| || | |||||| || Sbjct 1916 AAGTCGTAACAAGGTAAGCATACTGGAAAGTGTGCTTGGATAAC 1959 >NC_056676.1 Panthera tigris isolate Pti1 chromosome F2, P.tigris_Pti1_mat1.1, whole genome shotgun sequence Length=82905707 Score = 40.1 bits (43), Expect = 6.0 Identities = 35/44 (80%), Gaps = 0/44 (0%) Strand=Plus/Plus Query 1494 AAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCAC 1537 ||||||||||||||||| | || |||| || | |||||| || Sbjct 5572035 AAGTCGTAACAAGGTAAGCCTACTGGAAAGTGTGCTTGGATGAC 5572078 Score = 40.1 bits (43), Expect = 6.0 Identities = 35/44 (80%), Gaps = 0/44 (0%) Strand=Plus/Plus Query 1494 AAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCAC 1537 ||||||||||||||||| | || |||| || | |||||| || Sbjct 5588643 AAGTCGTAACAAGGTAAGCCTACTGGAAAGTGTGCTTGGATGAC 5588686 >NC_056678.1 Panthera tigris isolate Pti1 chromosome F3, P.tigris_Pti1_mat1.1, whole genome shotgun sequence Length=69613107 Score = 39.2 bits (42), Expect = 6.0 Identities = 33/41 (80%), Gaps = 0/41 (0%) Strand=Plus/Minus Query 1494 AAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGAT 1534 ||||||||||||||||| | || |||| || | |||||| Sbjct 3249770 AAGTCGTAACAAGGTAAGCATACTGGAAAGTGGGCTTGGAT 3249730 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3668439763399 Database: genomic.fna Posted date: Dec 1, 2024 4:46 AM Number of letters in database: 2,408,695,688 Number of sequences in database: 75 Matrix: blastn matrix 2 -3 Gap Penalties: Existence: 5, Extension: 2