FastQCFastQC Report
Ср 17 фев 2016
chr16.fastq

Summary

[OK]Basic Statistics

MeasureValue
Filenamechr16.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3965
Sequences flagged as poor quality0
Sequence length100
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CATTGCCAAACCTTCAGCCAGAGTTGCAGACAGAGCCATCGTGGCAGCCG70.17654476670870115No Hit
GTGGCAGCCGGAGCCAGAGCTCCAGCCAGAGCCCGGCCAGCCACCGCAAC70.17654476670870115No Hit
CAGAGCCCGGCCAGCCACCGCAACCCAACTGGAGCCCACAGCTCATCCGG60.15132408575031525No Hit
CACCTCCTTAAAGGGTACCTGAGCTCCACGTCTTGGTTTTGTACACCTGC60.15132408575031525No Hit
TGCACCCGCCATTGCCAAACCTTCAGCCAGAGTTGCAGACAGAGCCATCG60.15132408575031525No Hit
GAGCCAGAGCTCCAGCCAGAGCCCGGCCAGCCACCGCAACCCAACTGGAG60.15132408575031525No Hit
AGAACCAGGAAGAGAACATGCAGAAGGCACTAAGCTTCCTGGGCCCCTCA50.12610340479192939No Hit
AGGATGGTGGGCCGCATGGGAGAGTGGTGGGAGTTCATAGTCTTTTTGTG50.12610340479192939No Hit
TACACCTGCTGGATCCTCTTGGCCATTTTTTTCTTTTTCAGCTTGCCTTC50.12610340479192939No Hit
CCTCTTGGCCATTTTTTTCTTTTTCAGCTTGCCTTCCAAGTTCTTTCTGT50.12610340479192939No Hit
GGAGCCCACAGCTCATCCGGCCACCAGAGCCAGAGTCCCAACACTAGTCC50.12610340479192939No Hit
GGCCACCAGAGCCAGAGTCCCAACACTAGTCCACCACCAAAGCGCCACAA50.12610340479192939No Hit
AGGCCTGAACCACTCCCATCACCATCACATACTTTCCTAGAAAAAGAAGA40.1008827238335435No Hit
TAGTCTTTTTGTGGCGCTTTGGTGGTGGACTAGTGTTGGGACTCTGGCTC40.1008827238335435No Hit
AAAAAAAAGAATATTACTATGGGCTTTTCTTCTTTTTCTAGGAAAGTATG40.1008827238335435No Hit
TACTATGGGCTTTTCTTCTTTTTCTAGGAAAGTATGTGATGGTGATGGGA40.1008827238335435No Hit
AGGGTGGGGAGGACAGGGGCAGTAATGCCATTTGCCTGCCTGCATTCTCT40.1008827238335435No Hit
TAGCAACTCTCAGCCCCAAAGCCGCACCTGCACCCGCCATTGCCAAACCT40.1008827238335435No Hit
GGTGGCCCTTCCCCACCTCCTTAAAGGGTACCTGAGCTCCGCGTCTTGGT40.1008827238335435No Hit
AAAGGCTGCAGAACCAGGAAGAGAACATGCAGAAGGCACTAAGCTTCCTG40.1008827238335435No Hit
CCTTCCCCACCTCCTTAAAGGGTACCTGAGCTCCGCGTCTTGGTTTTGTA40.1008827238335435No Hit
CCGCATGGGAGAGTGGTGGGAGTTCATAGTCTTTTTGTGGCGCTTTGGTG40.1008827238335435No Hit
CTTGGCCATTTTTTTCTTTTTCAGCTTGCCTTCCAAGTTCTTTCTGTTCT40.1008827238335435No Hit
CTTCTTGCCTGTGGTTCCTTTGTGACCTGGCTGCAACCTTCCTCTCACTG40.1008827238335435No Hit
GCCAGCCACCGCAACCCAACTGGAGCCCACAGCTCATCCGGCCACCAGAG40.1008827238335435No Hit
CTCATCCGGCCACCAGAGCCAGAGTCCCAACACTAGTCCACCACCAAAGC40.1008827238335435No Hit
GTACCTTTGGAAGCAAGTCCCTGAGACATTGGTGATCCAACAACAGCTTC40.1008827238335435No Hit
CAGAGCTCCAGCCAGAGCCCGGCCAGCCACCGCAACCCAACTGGAGCCCA40.1008827238335435No Hit
GCCCACAGCTCATCCGGCCACCAGAGCCAGAGTCCCAACACTAGTCCACC40.1008827238335435No Hit
ACTCTGTCTCAAAAGAAGAAAAAAAAAAGAATATTACTATGGGCTTTTCT40.1008827238335435No Hit
GGCGTTGATTTCTGGCATTTTTGAAGGACTCTTCACATTGCACACCAGAT40.1008827238335435No Hit
ATATTCAATCACAAATGAGTAGTTGTAAGACCTTACAGGAGGTCAAGGAG40.1008827238335435No Hit
GGGATTTTGGTTGTTTTTAACGACAGTTCCAACATACTCTAAGGAATATT40.1008827238335435No Hit
ATCGTGGCAGCCGGAGCCAGAGCTCCAGCCAGAGCCCGGCCAGCCACCGC40.1008827238335435No Hit
AGAGCCCGGCCAGCCACCGCAACCCAACTGGAGCCCACAGCTCATCCGGC40.1008827238335435No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.2)