******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.5.1 (Release date: Sun Jan 29 10:33:12 2023 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= TRAIN.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ Seq1 1.0000 25 Seq2 1.0000 25 Seq3 1.0000 25 Seq4 1.0000 25 Seq5 1.0000 25 Seq6 1.0000 25 Seq7 1.0000 25 Seq8 1.0000 25 Seq9 1.0000 25 Seq10 1.0000 25 Seq11 1.0000 25 Seq12 1.0000 25 Seq13 1.0000 25 Seq14 1.0000 25 Seq15 1.0000 25 Seq16 1.0000 25 Seq17 1.0000 25 Seq18 1.0000 25 Seq19 1.0000 25 Seq20 1.0000 25 Seq21 1.0000 25 Seq22 1.0000 25 Seq23 1.0000 25 Seq24 1.0000 25 Seq25 1.0000 25 Seq26 1.0000 25 Seq27 1.0000 25 Seq28 1.0000 25 Seq29 1.0000 25 Seq30 1.0000 25 Seq31 1.0000 25 Seq32 1.0000 25 Seq33 1.0000 25 Seq34 1.0000 25 Seq35 1.0000 25 Seq36 1.0000 25 Seq37 1.0000 25 Seq38 1.0000 25 Seq39 1.0000 25 Seq40 1.0000 25 Seq41 1.0000 25 Seq42 1.0000 25 Seq43 1.0000 25 Seq44 1.0000 25 Seq45 1.0000 25 Seq46 1.0000 25 Seq47 1.0000 25 Seq48 1.0000 25 Seq49 1.0000 25 Seq50 1.0000 25 Seq51 1.0000 25 Seq52 1.0000 25 Seq53 1.0000 25 Seq54 1.0000 25 Seq55 1.0000 25 Seq56 1.0000 25 Seq57 1.0000 25 Seq58 1.0000 25 Seq59 1.0000 25 Seq60 1.0000 25 Seq61 1.0000 25 Seq62 1.0000 25 Seq63 1.0000 25 Seq64 1.0000 25 Seq65 1.0000 25 Seq66 1.0000 25 Seq67 1.0000 25 Seq68 1.0000 25 Seq69 1.0000 25 Seq70 1.0000 25 Seq71 1.0000 25 Seq72 1.0000 25 Seq73 1.0000 25 Seq74 1.0000 25 Seq75 1.0000 25 Seq76 1.0000 25 Seq77 1.0000 25 Seq78 1.0000 25 Seq79 1.0000 25 Seq80 1.0000 25 Seq81 1.0000 25 Seq82 1.0000 25 Seq83 1.0000 25 Seq84 1.0000 25 Seq85 1.0000 25 Seq86 1.0000 25 Seq87 1.0000 25 Seq88 1.0000 25 Seq89 1.0000 25 Seq90 1.0000 25 Seq91 1.0000 25 Seq92 1.0000 25 Seq93 1.0000 25 Seq94 1.0000 25 Seq95 1.0000 25 Seq96 1.0000 25 Seq97 1.0000 25 Seq98 1.0000 25 Seq99 1.0000 25 Seq100 1.0000 25 Seq101 1.0000 25 Seq102 1.0000 25 Seq103 1.0000 25 Seq104 1.0000 25 Seq105 1.0000 25 Seq106 1.0000 25 Seq107 1.0000 25 Seq108 1.0000 25 Seq109 1.0000 25 Seq110 1.0000 25 Seq111 1.0000 25 Seq112 1.0000 25 Seq113 1.0000 25 Seq114 1.0000 25 Seq115 1.0000 25 Seq116 1.0000 25 Seq117 1.0000 25 Seq118 1.0000 25 Seq119 1.0000 25 Seq120 1.0000 25 Seq121 1.0000 25 Seq122 1.0000 25 Seq123 1.0000 25 Seq124 1.0000 25 Seq125 1.0000 25 Seq126 1.0000 25 Seq127 1.0000 25 Seq128 1.0000 25 Seq129 1.0000 25 Seq130 1.0000 25 Seq131 1.0000 25 Seq132 1.0000 25 Seq133 1.0000 25 Seq134 1.0000 25 Seq135 1.0000 25 Seq136 1.0000 25 Seq137 1.0000 25 Seq138 1.0000 25 Seq139 1.0000 25 Seq140 1.0000 25 Seq141 1.0000 25 Seq142 1.0000 25 Seq143 1.0000 25 Seq144 1.0000 25 Seq145 1.0000 25 Seq146 1.0000 25 Seq147 1.0000 25 Seq148 1.0000 25 Seq149 1.0000 25 Seq150 1.0000 25 Seq151 1.0000 25 Seq152 1.0000 25 Seq153 1.0000 25 Seq154 1.0000 25 Seq155 1.0000 25 Seq156 1.0000 25 Seq157 1.0000 25 Seq158 1.0000 25 Seq159 1.0000 25 Seq160 1.0000 25 Seq161 1.0000 25 Seq162 1.0000 25 Seq163 1.0000 25 Seq164 1.0000 25 Seq165 1.0000 25 Seq166 1.0000 25 Seq167 1.0000 25 Seq168 1.0000 25 Seq169 1.0000 25 Seq170 1.0000 25 Seq171 1.0000 25 Seq172 1.0000 25 Seq173 1.0000 25 Seq174 1.0000 25 Seq175 1.0000 25 Seq176 1.0000 25 Seq177 1.0000 25 Seq178 1.0000 25 Seq179 1.0000 25 Seq180 1.0000 25 Seq181 1.0000 25 Seq182 1.0000 25 Seq183 1.0000 25 Seq184 1.0000 25 Seq185 1.0000 25 Seq186 1.0000 25 Seq187 1.0000 25 Seq188 1.0000 25 Seq189 1.0000 25 Seq190 1.0000 25 Seq191 1.0000 25 Seq192 1.0000 25 Seq193 1.0000 25 Seq194 1.0000 25 Seq195 1.0000 25 Seq196 1.0000 25 Seq197 1.0000 25 Seq198 1.0000 25 Seq199 1.0000 25 Seq200 1.0000 25 Seq201 1.0000 25 Seq202 1.0000 25 Seq203 1.0000 25 Seq204 1.0000 25 Seq205 1.0000 25 Seq206 1.0000 25 Seq207 1.0000 25 Seq208 1.0000 25 Seq209 1.0000 25 Seq210 1.0000 25 Seq211 1.0000 25 Seq212 1.0000 25 Seq213 1.0000 25 Seq214 1.0000 25 Seq215 1.0000 25 Seq216 1.0000 25 Seq217 1.0000 25 Seq218 1.0000 25 Seq219 1.0000 25 Seq220 1.0000 25 Seq221 1.0000 25 Seq222 1.0000 25 Seq223 1.0000 25 Seq224 1.0000 25 Seq225 1.0000 25 Seq226 1.0000 25 Seq227 1.0000 25 Seq228 1.0000 25 Seq229 1.0000 25 Seq230 1.0000 25 Seq231 1.0000 25 Seq232 1.0000 25 Seq233 1.0000 25 Seq234 1.0000 25 Seq235 1.0000 25 Seq236 1.0000 25 Seq237 1.0000 25 Seq238 1.0000 25 Seq239 1.0000 25 Seq240 1.0000 25 Seq241 1.0000 25 Seq242 1.0000 25 Seq243 1.0000 25 Seq244 1.0000 25 Seq245 1.0000 25 Seq246 1.0000 25 Seq247 1.0000 25 Seq248 1.0000 25 Seq249 1.0000 25 Seq250 1.0000 25 Seq251 1.0000 25 Seq252 1.0000 25 Seq253 1.0000 25 Seq254 1.0000 25 Seq255 1.0000 25 Seq256 1.0000 25 Seq257 1.0000 25 Seq258 1.0000 25 Seq259 1.0000 25 Seq260 1.0000 25 Seq261 1.0000 25 Seq262 1.0000 25 Seq263 1.0000 25 Seq264 1.0000 25 Seq265 1.0000 25 Seq266 1.0000 25 Seq267 1.0000 25 Seq268 1.0000 25 Seq269 1.0000 25 Seq270 1.0000 25 Seq271 1.0000 25 Seq272 1.0000 25 Seq273 1.0000 25 Seq274 1.0000 25 Seq275 1.0000 25 Seq276 1.0000 25 Seq277 1.0000 25 Seq278 1.0000 25 Seq279 1.0000 25 Seq280 1.0000 25 Seq281 1.0000 25 Seq282 1.0000 25 Seq283 1.0000 25 Seq284 1.0000 25 Seq285 1.0000 25 Seq286 1.0000 25 Seq287 1.0000 25 Seq288 1.0000 25 Seq289 1.0000 25 Seq290 1.0000 25 Seq291 1.0000 25 Seq292 1.0000 25 Seq293 1.0000 25 Seq294 1.0000 25 Seq295 1.0000 25 Seq296 1.0000 25 Seq297 1.0000 25 Seq298 1.0000 25 Seq299 1.0000 25 Seq300 1.0000 25 Seq301 1.0000 25 Seq302 1.0000 25 Seq303 1.0000 25 Seq304 1.0000 25 Seq305 1.0000 25 Seq306 1.0000 25 Seq307 1.0000 25 Seq308 1.0000 25 Seq309 1.0000 25 Seq310 1.0000 25 Seq311 1.0000 25 Seq312 1.0000 25 Seq313 1.0000 25 Seq314 1.0000 25 Seq315 1.0000 25 Seq316 1.0000 25 Seq317 1.0000 25 Seq318 1.0000 25 Seq319 1.0000 25 Seq320 1.0000 25 Seq321 1.0000 25 Seq322 1.0000 25 Seq323 1.0000 25 Seq324 1.0000 25 Seq325 1.0000 25 Seq326 1.0000 25 Seq327 1.0000 25 Seq328 1.0000 25 Seq329 1.0000 25 Seq330 1.0000 25 Seq331 1.0000 25 Seq332 1.0000 25 Seq333 1.0000 25 Seq334 1.0000 25 Seq335 1.0000 25 Seq336 1.0000 25 Seq337 1.0000 25 Seq338 1.0000 25 Seq339 1.0000 25 Seq340 1.0000 25 Seq341 1.0000 25 Seq342 1.0000 25 Seq343 1.0000 25 Seq344 1.0000 25 Seq345 1.0000 25 Seq346 1.0000 25 Seq347 1.0000 25 Seq348 1.0000 25 Seq349 1.0000 25 Seq350 1.0000 25 Seq351 1.0000 25 Seq352 1.0000 25 Seq353 1.0000 25 Seq354 1.0000 25 Seq355 1.0000 25 Seq356 1.0000 25 Seq357 1.0000 25 Seq358 1.0000 25 Seq359 1.0000 25 Seq360 1.0000 25 Seq361 1.0000 25 Seq362 1.0000 25 Seq363 1.0000 25 Seq364 1.0000 25 Seq365 1.0000 25 Seq366 1.0000 25 Seq367 1.0000 25 Seq368 1.0000 25 Seq369 1.0000 25 Seq370 1.0000 25 Seq371 1.0000 25 Seq372 1.0000 25 Seq373 1.0000 25 Seq374 1.0000 25 Seq375 1.0000 25 Seq376 1.0000 25 Seq377 1.0000 25 Seq378 1.0000 25 Seq379 1.0000 25 Seq380 1.0000 25 Seq381 1.0000 25 Seq382 1.0000 25 Seq383 1.0000 25 Seq384 1.0000 25 Seq385 1.0000 25 Seq386 1.0000 25 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme TRAIN.fasta -dna -nmotifs 1 -minw 5 -maxw 10 model: mod= zoops nmotifs= 1 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 5 maxw= 10 nsites: minsites= 2 maxsites= 386 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 9650 N= 386 sample: seed= 0 hsfrac= 0 searchsize= 9650 norand= no csites= 1000 Letter frequencies in dataset: A 0.331 C 0.174 G 0.246 T 0.249 Background letter frequencies (from file dataset with add-one prior applied): A 0.331 C 0.174 G 0.246 T 0.249 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF MWGGAG MEME-1 width = 6 sites = 88 llr = 556 E-value = 5.9e-024 ******************************************************************************** -------------------------------------------------------------------------------- Motif MWGGAG MEME-1 Description -------------------------------------------------------------------------------- Simplified A 37::a: pos.-specific C 5::::: probability G 2:aa:a matrix T :3:::: bits 2.5 2.3 2.0 ** * 1.8 ** * Relative 1.5 **** Entropy 1.3 **** (9.1 bits) 1.0 **** 0.8 ****** 0.5 ****** 0.3 ****** 0.0 ------ Multilevel CAGGAG consensus AT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MWGGAG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ------ Seq376 16 2.84e-04 ACGTTTTCGC CAGGAG ACAG Seq367 16 2.84e-04 AACTATGCAA CAGGAG GTAA Seq362 14 2.84e-04 GACACCTTTT CAGGAG TAAGAC Seq344 9 2.84e-04 AAAAATTT CAGGAG TGCGTCAAAG Seq331 18 2.84e-04 TAAACAACGT CAGGAG AC Seq316 6 2.84e-04 TACTG CAGGAG AAAACAACTC Seq278 13 2.84e-04 AAGCTAAAAC CAGGAG CTATTTA Seq253 11 2.84e-04 AACAAAATTA CAGGAG TTGATTTTG Seq232 15 2.84e-04 GGAAGAAGTC CAGGAG TATTC Seq217 13 2.84e-04 GGCAAACATC CAGGAG CAAAGCT Seq210 13 2.84e-04 CACAAATGTG CAGGAG TCCAAAA Seq195 11 2.84e-04 AATGGGCGAC CAGGAG CCAGTCCGA Seq183 12 2.84e-04 ACTCTGGACA CAGGAG GAATGGTT Seq175 12 2.84e-04 CCCTGATAGA CAGGAG TGTTTCGC Seq173 15 2.84e-04 TTTAGTAAAG CAGGAG GCTCT Seq164 10 2.84e-04 AGTTTTGTT CAGGAG TTCCCCTTTT Seq158 15 2.84e-04 GCTCTGCTCA CAGGAG GGGTT Seq125 15 2.84e-04 TAAAACTGTT CAGGAG TCTTT Seq119 16 2.84e-04 TGCCGATGTA CAGGAG GCAA Seq112 14 2.84e-04 TCATTTCACT CAGGAG CATGGG Seq111 14 2.84e-04 TCCTTTTTGC CAGGAG CTTGAT Seq107 13 2.84e-04 GAACGAAGAG CAGGAG ATCCACT Seq92 12 2.84e-04 TTCAGTACAA CAGGAG TAAACGGC Seq88 13 2.84e-04 TCACTGGGTG CAGGAG CAGGACG Seq68 15 2.84e-04 GGAGAGAATC CAGGAG ATTAA Seq64 14 2.84e-04 GGCATCACCG CAGGAG ACTGGC Seq59 15 2.84e-04 TTATTTTCAT CAGGAG TTTTT Seq31 13 2.84e-04 AATATAGATA CAGGAG AGCACAT Seq22 15 2.84e-04 GGTATTCCGA CAGGAG GCAAG Seq329 16 4.97e-04 CGTATCATGC CTGGAG TGCA Seq287 13 4.97e-04 CGCTGAGACT CTGGAG ACTAGCA Seq237 14 4.97e-04 AAAATTGCTT CTGGAG AGACGG Seq201 13 4.97e-04 GTTCATATTC CTGGAG TTTGGGT Seq191 12 4.97e-04 TTGATAGATT CTGGAG ACTAGCCA Seq184 15 4.97e-04 CTCCCCGGCA CTGGAG AGAAA Seq122 16 4.97e-04 TACTACCATG CTGGAG TGTA Seq84 13 4.97e-04 TATCCCTATT CTGGAG ATATTCC Seq40 12 4.97e-04 AGGATATGGT CTGGAG TGAGATGT Seq29 11 4.97e-04 TCTTCAACAA CTGGAG GAATAAGGT Seq19 16 4.97e-04 TCAACAGATG CTGGAG GAAT Seq15 10 4.97e-04 GCGGGCCAT CTGGAG GAAAACGACC Seq9 14 4.97e-04 GTATCTCAGA CTGGAG TCCAGT Seq2 14 4.97e-04 CGAGCATGCC CTGGAG GAATAC Seq377 14 1.04e-03 TTTCGATAAC AAGGAG CAGGGC Seq359 15 1.04e-03 GGCAACATCA AAGGAG AACAA Seq335 15 1.04e-03 TGCCAAAACG AAGGAG TCAGA Seq317 11 1.04e-03 TGGTGAACCA AAGGAG AAAGGGATG Seq292 14 1.04e-03 GAAGTACTCT AAGGAG CGAATC Seq288 12 1.04e-03 GGCCGTAAAT AAGGAG CGTCGCTG Seq277 9 1.04e-03 CTCCTGAA AAGGAG TGCTTTTTTT Seq211 14 1.04e-03 CGATACAGAA AAGGAG TCTGCC Seq192 14 1.04e-03 AATAATCCGT AAGGAG CAATTC Seq178 15 1.04e-03 ATGGACAAAA AAGGAG ACGCC Seq159 13 1.04e-03 AGTGCGTGTT AAGGAG AAGCAAC Seq126 14 1.04e-03 CCAGCTGGTG AAGGAG AAAATG Seq123 14 1.04e-03 CCAAAATTTC AAGGAG TTCGTT Seq93 14 1.04e-03 CCCTCAAAAC AAGGAG AGGGCG Seq90 11 1.04e-03 ACGTTACGGG AAGGAG TAGGTATAG Seq79 14 1.04e-03 GGATACCAAT AAGGAG AAACGC Seq77 11 1.04e-03 TACCAAGCTA AAGGAG TGGGCATTG Seq60 11 1.04e-03 ACTATATGGC AAGGAG GATTTTATT Seq54 15 1.04e-03 AACGCAATCG AAGGAG AGAAG Seq12 14 1.04e-03 ATGCTTAACA AAGGAG TCCATC Seq319 12 1.44e-03 CTTAAGTTAA GAGGAG CAGATTAA Seq300 14 1.44e-03 GGTTAAAGTT GAGGAG TAAGAG Seq284 13 1.44e-03 GAGTAAGTCG GAGGAG TAATACA Seq283 12 1.44e-03 TAAGCAAGTT GAGGAG ATGCTGGC Seq227 15 1.44e-03 GCGCCCTGGC GAGGAG AAAGA Seq198 14 1.44e-03 AAGGAAAACG GAGGAG AGTACC Seq95 11 1.44e-03 TTAAATTTGC GAGGAG ATCATTCCA Seq89 13 1.44e-03 GTAAGTAATT GAGGAG TAAGGTC Seq28 17 1.44e-03 CTGAAATAGC GAGGAG TGC Seq326 12 1.84e-03 TGAATATTTG ATGGAG CAATAAAA Seq258 9 1.84e-03 CCCGGTTT ATGGAG ATGATGCTGA Seq252 13 1.84e-03 CATCATTTGA ATGGAG GCCATCT Seq222 13 1.84e-03 TATCGTGGCA ATGGAG GATGAAT Seq200 15 1.84e-03 CATTCAGGAA ATGGAG TGACC Seq177 16 1.84e-03 ACGTGTGAAT ATGGAG GGAT Seq176 11 1.84e-03 CCTTCAGTTT ATGGAG AAACCACGG Seq134 16 1.84e-03 TTGTAACAAT ATGGAG TTGC Seq321 12 2.15e-03 ATATGGAATG GTGGAG AATGAAAC Seq254 11 2.15e-03 TTCTTCACCT GTGGAG CATTTTAAG Seq249 14 2.15e-03 AACATGATTC GTGGAG AAAGTG Seq218 12 2.15e-03 GGGCCTGGTA GTGGAG GATTAAGA Seq163 15 2.15e-03 TAGAGTGACA GTGGAG TTAAA Seq135 16 2.15e-03 ATTCTTCTCT GTGGAG TGGA Seq91 13 2.15e-03 GACTATAAAA GTGGAG TTTCATC Seq32 14 2.15e-03 CGGTCTTAAG GTGGAG GTTGTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MWGGAG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- Seq376 0.00028 15_[+1]_4 Seq367 0.00028 15_[+1]_4 Seq362 0.00028 13_[+1]_6 Seq344 0.00028 8_[+1]_11 Seq331 0.00028 17_[+1]_2 Seq316 0.00028 5_[+1]_14 Seq278 0.00028 12_[+1]_7 Seq253 0.00028 10_[+1]_9 Seq232 0.00028 14_[+1]_5 Seq217 0.00028 12_[+1]_7 Seq210 0.00028 12_[+1]_7 Seq195 0.00028 10_[+1]_9 Seq183 0.00028 11_[+1]_8 Seq175 0.00028 11_[+1]_8 Seq173 0.00028 14_[+1]_5 Seq164 0.00028 9_[+1]_10 Seq158 0.00028 14_[+1]_5 Seq125 0.00028 14_[+1]_5 Seq119 0.00028 15_[+1]_4 Seq112 0.00028 13_[+1]_6 Seq111 0.00028 13_[+1]_6 Seq107 0.00028 12_[+1]_7 Seq92 0.00028 11_[+1]_8 Seq88 0.00028 12_[+1]_7 Seq68 0.00028 14_[+1]_5 Seq64 0.00028 13_[+1]_6 Seq59 0.00028 14_[+1]_5 Seq31 0.00028 12_[+1]_7 Seq22 0.00028 14_[+1]_5 Seq329 0.0005 15_[+1]_4 Seq287 0.0005 12_[+1]_7 Seq237 0.0005 13_[+1]_6 Seq201 0.0005 12_[+1]_7 Seq191 0.0005 11_[+1]_8 Seq184 0.0005 14_[+1]_5 Seq122 0.0005 15_[+1]_4 Seq84 0.0005 12_[+1]_7 Seq40 0.0005 11_[+1]_8 Seq29 0.0005 10_[+1]_9 Seq19 0.0005 15_[+1]_4 Seq15 0.0005 9_[+1]_10 Seq9 0.0005 13_[+1]_6 Seq2 0.0005 13_[+1]_6 Seq377 0.001 13_[+1]_6 Seq359 0.001 14_[+1]_5 Seq335 0.001 14_[+1]_5 Seq317 0.001 10_[+1]_9 Seq292 0.001 13_[+1]_6 Seq288 0.001 11_[+1]_8 Seq277 0.001 8_[+1]_11 Seq211 0.001 13_[+1]_6 Seq192 0.001 13_[+1]_6 Seq178 0.001 14_[+1]_5 Seq159 0.001 12_[+1]_7 Seq126 0.001 13_[+1]_6 Seq123 0.001 13_[+1]_6 Seq93 0.001 13_[+1]_6 Seq90 0.001 10_[+1]_9 Seq79 0.001 13_[+1]_6 Seq77 0.001 10_[+1]_9 Seq60 0.001 10_[+1]_9 Seq54 0.001 14_[+1]_5 Seq12 0.001 13_[+1]_6 Seq319 0.0014 11_[+1]_8 Seq300 0.0014 13_[+1]_6 Seq284 0.0014 12_[+1]_7 Seq283 0.0014 11_[+1]_8 Seq227 0.0014 14_[+1]_5 Seq198 0.0014 13_[+1]_6 Seq95 0.0014 10_[+1]_9 Seq89 0.0014 12_[+1]_7 Seq28 0.0014 16_[+1]_3 Seq326 0.0018 11_[+1]_8 Seq258 0.0018 8_[+1]_11 Seq252 0.0018 12_[+1]_7 Seq222 0.0018 12_[+1]_7 Seq200 0.0018 14_[+1]_5 Seq177 0.0018 15_[+1]_4 Seq176 0.0018 10_[+1]_9 Seq134 0.0018 15_[+1]_4 Seq321 0.0021 11_[+1]_8 Seq254 0.0021 10_[+1]_9 Seq249 0.0021 13_[+1]_6 Seq218 0.0021 11_[+1]_8 Seq163 0.0021 14_[+1]_5 Seq135 0.0021 15_[+1]_4 Seq91 0.0021 12_[+1]_7 Seq32 0.0021 13_[+1]_6 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MWGGAG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF MWGGAG width=6 seqs=88 Seq376 ( 16) CAGGAG 1 Seq367 ( 16) CAGGAG 1 Seq362 ( 14) CAGGAG 1 Seq344 ( 9) CAGGAG 1 Seq331 ( 18) CAGGAG 1 Seq316 ( 6) CAGGAG 1 Seq278 ( 13) CAGGAG 1 Seq253 ( 11) CAGGAG 1 Seq232 ( 15) CAGGAG 1 Seq217 ( 13) CAGGAG 1 Seq210 ( 13) CAGGAG 1 Seq195 ( 11) CAGGAG 1 Seq183 ( 12) CAGGAG 1 Seq175 ( 12) CAGGAG 1 Seq173 ( 15) CAGGAG 1 Seq164 ( 10) CAGGAG 1 Seq158 ( 15) CAGGAG 1 Seq125 ( 15) CAGGAG 1 Seq119 ( 16) CAGGAG 1 Seq112 ( 14) CAGGAG 1 Seq111 ( 14) CAGGAG 1 Seq107 ( 13) CAGGAG 1 Seq92 ( 12) CAGGAG 1 Seq88 ( 13) CAGGAG 1 Seq68 ( 15) CAGGAG 1 Seq64 ( 14) CAGGAG 1 Seq59 ( 15) CAGGAG 1 Seq31 ( 13) CAGGAG 1 Seq22 ( 15) CAGGAG 1 Seq329 ( 16) CTGGAG 1 Seq287 ( 13) CTGGAG 1 Seq237 ( 14) CTGGAG 1 Seq201 ( 13) CTGGAG 1 Seq191 ( 12) CTGGAG 1 Seq184 ( 15) CTGGAG 1 Seq122 ( 16) CTGGAG 1 Seq84 ( 13) CTGGAG 1 Seq40 ( 12) CTGGAG 1 Seq29 ( 11) CTGGAG 1 Seq19 ( 16) CTGGAG 1 Seq15 ( 10) CTGGAG 1 Seq9 ( 14) CTGGAG 1 Seq2 ( 14) CTGGAG 1 Seq377 ( 14) AAGGAG 1 Seq359 ( 15) AAGGAG 1 Seq335 ( 15) AAGGAG 1 Seq317 ( 11) AAGGAG 1 Seq292 ( 14) AAGGAG 1 Seq288 ( 12) AAGGAG 1 Seq277 ( 9) AAGGAG 1 Seq211 ( 14) AAGGAG 1 Seq192 ( 14) AAGGAG 1 Seq178 ( 15) AAGGAG 1 Seq159 ( 13) AAGGAG 1 Seq126 ( 14) AAGGAG 1 Seq123 ( 14) AAGGAG 1 Seq93 ( 14) AAGGAG 1 Seq90 ( 11) AAGGAG 1 Seq79 ( 14) AAGGAG 1 Seq77 ( 11) AAGGAG 1 Seq60 ( 11) AAGGAG 1 Seq54 ( 15) AAGGAG 1 Seq12 ( 14) AAGGAG 1 Seq319 ( 12) GAGGAG 1 Seq300 ( 14) GAGGAG 1 Seq284 ( 13) GAGGAG 1 Seq283 ( 12) GAGGAG 1 Seq227 ( 15) GAGGAG 1 Seq198 ( 14) GAGGAG 1 Seq95 ( 11) GAGGAG 1 Seq89 ( 13) GAGGAG 1 Seq28 ( 17) GAGGAG 1 Seq326 ( 12) ATGGAG 1 Seq258 ( 9) ATGGAG 1 Seq252 ( 13) ATGGAG 1 Seq222 ( 13) ATGGAG 1 Seq200 ( 15) ATGGAG 1 Seq177 ( 16) ATGGAG 1 Seq176 ( 11) ATGGAG 1 Seq134 ( 16) ATGGAG 1 Seq321 ( 12) GTGGAG 1 Seq254 ( 11) GTGGAG 1 Seq249 ( 14) GTGGAG 1 Seq218 ( 12) GTGGAG 1 Seq163 ( 15) GTGGAG 1 Seq135 ( 16) GTGGAG 1 Seq91 ( 13) GTGGAG 1 Seq32 ( 14) GTGGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MWGGAG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 6 n= 7720 bayes= 8.32493 E= 5.9e-024 -6 149 -35 -1310 99 -1310 -1310 45 -1310 -1310 202 -1310 -1310 -1310 202 -1310 159 -1310 -1310 -1310 -1310 -1310 202 -1310 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MWGGAG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 6 nsites= 88 E= 5.9e-024 0.318182 0.488636 0.193182 0.000000 0.659091 0.000000 0.000000 0.340909 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MWGGAG MEME-1 regular expression -------------------------------------------------------------------------------- [CA][AT]GGAG -------------------------------------------------------------------------------- Time 8.73 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- Seq1 1.28e-01 25 Seq2 9.90e-03 25 Seq3 9.58e-01 25 Seq4 9.45e-01 25 Seq5 1.28e-01 25 Seq6 5.41e-01 25 Seq7 2.13e-01 25 Seq8 4.98e-01 25 Seq9 9.90e-03 25 Seq10 4.98e-01 25 Seq11 1.73e-01 25 Seq12 2.05e-02 25 Seq13 1.28e-01 25 Seq14 9.66e-01 25 Seq15 9.90e-03 25 Seq16 5.89e-01 25 Seq17 1.28e-01 25 Seq18 1.28e-01 25 Seq19 9.90e-03 25 Seq20 6.75e-02 25 Seq21 7.80e-01 25 Seq22 5.66e-03 25 Seq23 4.90e-02 25 Seq24 5.89e-01 25 Seq25 3.00e-01 25 Seq26 7.08e-01 25 Seq27 9.70e-01 25 Seq28 2.84e-02 25 Seq29 9.90e-03 25 Seq30 4.39e-01 25 Seq31 5.66e-03 25 Seq32 4.21e-02 25 Seq33 8.65e-01 25 Seq34 4.06e-01 25 Seq35 3.59e-01 25 Seq36 5.89e-01 25 Seq37 9.70e-01 25 Seq38 4.06e-01 25 Seq39 5.89e-01 25 Seq40 9.90e-03 25 Seq41 7.08e-01 25 Seq42 2.05e-02 25 Seq43 4.06e-01 25 Seq44 1.73e-01 25 Seq45 9.99e-01 25 Seq46 1.73e-01 25 Seq47 9.19e-01 25 Seq48 3.00e-01 25 Seq49 5.89e-01 25 Seq50 7.80e-01 25 Seq51 3.00e-01 25 Seq52 3.00e-01 25 Seq53 3.59e-01 25 Seq54 2.05e-02 25 Seq55 5.67e-02 25 Seq56 3.59e-01 25 Seq57 6.13e-01 25 Seq58 1.73e-01 25 Seq59 5.66e-03 25 Seq60 2.05e-02 25 Seq61 4.39e-01 25 Seq62 1.73e-01 25 Seq63 5.41e-01 25 Seq64 5.66e-03 25 Seq65 7.80e-01 25 Seq66 2.13e-01 25 Seq67 1.73e-01 25 Seq68 5.66e-03 25 Seq69 3.00e-01 25 Seq70 1.73e-01 25 Seq71 3.00e-01 25 Seq72 1.73e-01 25 Seq73 4.06e-01 25 Seq74 1.28e-01 25 Seq75 3.00e-01 25 Seq76 2.13e-01 25 Seq77 2.05e-02 25 Seq78 7.32e-02 25 Seq79 2.05e-02 25 Seq80 3.59e-01 25 Seq81 7.32e-02 25 Seq82 7.14e-01 25 Seq83 4.06e-01 25 Seq84 9.90e-03 25 Seq85 6.75e-02 25 Seq86 5.89e-01 25 Seq87 4.06e-01 25 Seq88 5.66e-03 25 Seq89 2.84e-02 25 Seq90 2.05e-02 25 Seq91 4.21e-02 25 Seq92 5.66e-03 25 Seq93 2.05e-02 25 Seq94 3.00e-01 25 Seq95 2.84e-02 25 Seq96 3.00e-01 25 Seq97 3.59e-01 25 Seq98 5.67e-02 25 Seq99 3.00e-01 25 Seq100 1.73e-01 25 Seq101 7.08e-01 25 Seq102 8.41e-01 25 Seq103 3.00e-01 25 Seq104 3.59e-01 25 Seq105 5.41e-01 25 Seq106 2.13e-01 25 Seq107 5.66e-03 25 Seq108 3.00e-01 25 Seq109 6.75e-02 25 Seq110 4.90e-02 25 Seq111 5.66e-03 25 Seq112 5.66e-03 25 Seq113 3.00e-01 25 Seq114 1.28e-01 25 Seq115 5.41e-01 25 Seq116 7.08e-01 25 Seq117 8.41e-01 25 Seq118 7.08e-01 25 Seq119 5.66e-03 25 Seq120 7.80e-01 25 Seq121 7.80e-01 25 Seq122 9.90e-03 25 Seq123 2.05e-02 25 Seq124 1.28e-01 25 Seq125 5.66e-03 25 Seq126 2.05e-02 25 Seq127 5.41e-01 25 Seq128 6.13e-01 25 Seq129 4.53e-01 25 Seq130 5.89e-01 25 Seq131 7.80e-01 25 Seq132 7.80e-01 25 Seq133 7.80e-01 25 Seq134 3.63e-02 25 Seq135 4.21e-02 25 Seq136 3.00e-01 25 Seq137 3.59e-01 25 Seq138 2.00e-01 25 Seq139 1.28e-01 25 Seq140 4.98e-01 25 Seq141 1.28e-01 25 Seq142 5.89e-01 25 Seq143 1.28e-01 25 Seq144 1.73e-01 25 Seq145 3.59e-01 25 Seq146 4.39e-01 25 Seq147 1.28e-01 25 Seq148 7.80e-01 25 Seq149 3.00e-01 25 Seq150 2.13e-01 25 Seq151 1.28e-01 25 Seq152 1.28e-01 25 Seq153 9.19e-01 25 Seq154 6.75e-02 25 Seq155 4.98e-01 25 Seq156 3.59e-01 25 Seq157 4.06e-01 25 Seq158 5.66e-03 25 Seq159 2.05e-02 25 Seq160 1.28e-01 25 Seq161 6.75e-02 25 Seq162 4.53e-01 25 Seq163 4.21e-02 25 Seq164 5.66e-03 25 Seq165 4.90e-02 25 Seq166 4.06e-01 25 Seq167 4.06e-01 25 Seq168 3.00e-01 25 Seq169 4.45e-01 25 Seq170 1.73e-01 25 Seq171 3.00e-01 25 Seq172 2.13e-01 25 Seq173 5.66e-03 25 Seq174 9.19e-01 25 Seq175 5.66e-03 25 Seq176 3.63e-02 25 Seq177 3.63e-02 25 Seq178 2.05e-02 25 Seq179 2.13e-01 25 Seq180 3.00e-01 25 Seq181 3.00e-01 25 Seq182 7.80e-01 25 Seq183 5.66e-03 25 Seq184 9.90e-03 25 Seq185 3.00e-01 25 Seq186 3.59e-01 25 Seq187 8.41e-01 25 Seq188 1.82e-01 25 Seq189 3.59e-01 25 Seq190 3.59e-01 25 Seq191 9.90e-03 25 Seq192 2.05e-02 25 Seq193 9.45e-01 25 Seq194 4.98e-01 25 Seq195 5.66e-03 25 Seq196 5.89e-01 25 Seq197 7.80e-01 25 Seq198 2.84e-02 25 Seq199 4.98e-01 25 Seq200 3.63e-02 25 Seq201 9.90e-03 25 Seq202 3.59e-01 25 Seq203 3.00e-01 25 Seq204 1.73e-01 25 Seq205 3.00e-01 25 Seq206 3.59e-01 25 Seq207 2.13e-01 25 Seq208 6.75e-02 25 Seq209 6.13e-01 25 Seq210 5.66e-03 25 Seq211 2.05e-02 25 Seq212 1.28e-01 25 Seq213 3.00e-01 25 Seq214 4.90e-02 25 Seq215 3.59e-01 25 Seq216 1.28e-01 25 Seq217 5.66e-03 25 Seq218 4.21e-02 25 Seq219 1.73e-01 25 Seq220 4.98e-01 25 Seq221 3.00e-01 25 Seq222 3.63e-02 25 Seq223 5.89e-01 25 Seq224 9.83e-01 25 Seq225 3.00e-01 25 Seq226 7.08e-01 25 Seq227 2.84e-02 25 Seq228 4.45e-01 25 Seq229 4.98e-01 25 Seq230 1.28e-01 25 Seq231 1.73e-01 25 Seq232 5.66e-03 25 Seq233 4.06e-01 25 Seq234 5.89e-01 25 Seq235 5.41e-01 25 Seq236 3.00e-01 25 Seq237 9.90e-03 25 Seq238 9.19e-01 25 Seq239 2.13e-01 25 Seq240 9.19e-01 25 Seq241 3.00e-01 25 Seq242 1.28e-01 25 Seq243 9.19e-01 25 Seq244 9.74e-01 25 Seq245 7.80e-01 25 Seq246 7.08e-01 25 Seq247 3.00e-01 25 Seq248 1.28e-01 25 Seq249 4.21e-02 25 Seq250 1.28e-01 25 Seq251 1.28e-01 25 Seq252 3.63e-02 25 Seq253 5.66e-03 25 Seq254 4.21e-02 25 Seq255 7.32e-02 25 Seq256 3.59e-01 25 Seq257 1.73e-01 25 Seq258 3.63e-02 25 Seq259 9.19e-01 25 Seq260 1.82e-01 25 Seq261 4.98e-01 25 Seq262 8.41e-01 25 Seq263 5.67e-02 25 Seq264 1.28e-01 25 Seq265 1.73e-01 25 Seq266 5.41e-01 25 Seq267 4.90e-02 25 Seq268 8.41e-01 25 Seq269 3.59e-01 25 Seq270 1.28e-01 25 Seq271 5.89e-01 25 Seq272 4.39e-01 25 Seq273 7.08e-01 25 Seq274 7.08e-01 25 Seq275 7.80e-01 25 Seq276 3.59e-01 25 Seq277 2.05e-02 25 Seq278 5.66e-03 25 Seq279 1.73e-01 25 Seq280 7.32e-02 25 Seq281 4.06e-01 25 Seq282 2.00e-01 25 Seq283 2.84e-02 25 Seq284 2.84e-02 25 Seq285 3.59e-01 25 Seq286 5.67e-02 25 Seq287 9.90e-03 25 Seq288 2.05e-02 25 Seq289 7.08e-01 25 Seq290 2.00e-01 25 Seq291 1.82e-01 25 Seq292 2.05e-02 25 Seq293 7.32e-02 25 Seq294 7.80e-01 25 Seq295 4.90e-02 25 Seq296 3.59e-01 25 Seq297 3.00e-01 25 Seq298 2.13e-01 25 Seq299 1.28e-01 25 Seq300 2.84e-02 25 Seq301 1.73e-01 25 Seq302 5.67e-02 25 Seq303 7.14e-01 25 Seq304 7.32e-02 25 Seq305 3.00e-01 25 Seq306 3.00e-01 25 Seq307 1.82e-01 25 Seq308 5.89e-01 25 Seq309 3.00e-01 25 Seq310 3.00e-01 25 Seq311 4.98e-01 25 Seq312 4.53e-01 25 Seq313 9.89e-01 25 Seq314 4.98e-01 25 Seq315 7.08e-01 25 Seq316 5.66e-03 25 Seq317 2.05e-02 25 Seq318 1.82e-01 25 Seq319 2.84e-02 25 Seq320 1.28e-01 25 Seq321 4.21e-02 25 Seq322 1.73e-01 25 Seq323 1.28e-01 25 Seq324 7.32e-02 25 Seq325 3.00e-01 25 Seq326 3.63e-02 25 Seq327 3.59e-01 25 Seq328 3.00e-01 25 Seq329 9.90e-03 25 Seq330 5.89e-01 25 Seq331 5.66e-03 25 Seq332 4.06e-01 25 Seq333 5.89e-01 25 Seq334 1.73e-01 25 Seq335 2.05e-02 25 Seq336 1.73e-01 25 Seq337 4.39e-01 25 Seq338 2.00e-01 25 Seq339 4.06e-01 25 Seq340 5.89e-01 25 Seq341 3.00e-01 25 Seq342 3.00e-01 25 Seq343 2.00e-01 25 Seq344 5.66e-03 25 Seq345 3.59e-01 25 Seq346 5.41e-01 25 Seq347 9.19e-01 25 Seq348 3.59e-01 25 Seq349 5.89e-01 25 Seq350 9.89e-01 25 Seq351 1.28e-01 25 Seq352 3.00e-01 25 Seq353 5.67e-02 25 Seq354 9.74e-01 25 Seq355 1.73e-01 25 Seq356 3.59e-01 25 Seq357 3.00e-01 25 Seq358 5.89e-01 25 Seq359 2.05e-02 25 Seq360 3.00e-01 25 Seq361 7.80e-01 25 Seq362 5.66e-03 25 Seq363 4.98e-01 25 Seq364 1.73e-01 25 Seq365 1.28e-01 25 Seq366 1.28e-01 25 Seq367 5.66e-03 25 Seq368 4.90e-02 25 Seq369 2.13e-01 25 Seq370 1.28e-01 25 Seq371 1.28e-01 25 Seq372 1.28e-01 25 Seq373 4.39e-01 25 Seq374 1.82e-01 25 Seq375 8.41e-01 25 Seq376 5.66e-03 25 Seq377 2.05e-02 25 Seq378 6.13e-01 25 Seq379 3.00e-01 25 Seq380 3.00e-01 25 Seq381 4.06e-01 25 Seq382 9.83e-01 25 Seq383 9.58e-01 25 Seq384 1.73e-01 25 Seq385 7.08e-01 25 Seq386 5.89e-01 25 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (1) found. ******************************************************************************** CPU: kodomo ********************************************************************************