MAST - Motif Alignment and Search Tool
MAST version 4.1.1 (Release date: Tue Apr 21 15:00:06 PDT 2009)
For further information on how to interpret these results or to get
a copy of the MAST software please access http://meme.nbcr.net.
REFERENCE
If you use this program in your research, please cite:
Timothy L. Bailey and Michael Gribskov,
"Combining evidence using p-values: application to sequence homology
searches", Bioinformatics, 14(48-54), 1998.
DATABASE AND MOTIFS
DATABASE ./seed.fasta (peptide)
Last updated on Fri May 28 13:13:31 2010
Database contains 37 sequences, 10697 residues
MOTIFS ./memeout.txt (peptide)
MOTIF WIDTH BEST POSSIBLE MATCH
----- ----- -------------------
1 21 WNNHHAIFEFKNEWYLFHHRC
2 22 HRFFEASWMHKYNGKYYFSYCI
3 21 HELCYMTSDNPMGPFTYQGHI
PAIRWISE MOTIF CORRELATIONS:
MOTIF 1 2
----- ----- -----
2 0.13
3 0.10 0.17
No overly similar pairs (correlation > 0.60) found.
Random model letter frequencies (from non-redundant database):
A 0.073 C 0.018 D 0.052 E 0.062 F 0.040 G 0.069 H 0.022 I 0.056 K 0.058
L 0.092 M 0.023 N 0.046 P 0.051 Q 0.041 R 0.052 S 0.074 T 0.059 V 0.064
W 0.013 Y 0.033
SECTION I: HIGH-SCORING SEQUENCES
- Each of the following 36 sequences has E-value less than 10.
- The E-value of a sequence is the expected number of sequences
in a random database of the same size that would match the motifs as
well as the sequence does and is equal to the combined p-value of the
sequence times the number of sequences in the database.
- The combined p-value of a sequence measures the strength of the
match of the sequence to all the motifs and is calculated by
- finding the score of the single best match of each motif
to the sequence (best matches may overlap),
- calculating the sequence p-value of each score,
- forming the product of the p-values,
- taking the p-value of the product.
- The sequence p-value of a score is defined as the
probability of a random sequence of the same length containing
some match with as good or better a score.
- The score for the match of a position in a sequence to a motif
is computed by by summing the appropriate entry from each column of
the position-dependent scoring matrix that represents the motif.
- Sequences shorter than one or more of the motifs are skipped.
- The table is sorted by increasing E-value.
| Links | Sequence Name | Description | E-value | Length
|
|---|
|
| Q97TI6_CLOAB/24-307
|
| 5.9e-12
| 284
|
|
| Q8A1I6_BACTN/28-326
|
| 1.9e-08
| 299
|
|
| Q81ZV8_STRAW/441-719
|
| 5e-08
| 279
|
|
| Q8A1Z2_BACTN/337-620
|
| 1e-06
| 284
|
|
| Q82P89_STRAW/52-348
|
| 8.2e-05
| 297
|
|
| Q8A3Q4_BACTN/26-309
|
| 9.9e-05
| 284
|
|
| Q8A0C6_BACTN/25-303
|
| 0.00011
| 279
|
|
| Q9K6P5_BACHD/5-295
|
| 0.0023
| 291
|
|
| Q8A1K5_BACTN/22-288
|
| 0.0028
| 267
|
|
| Q9CFH1_LACLA/4-305
|
| 0.017
| 302
|
|
| O30426_CALSA/54-321
|
| 0.018
| 268
|
|
| Q8Z9F3_SALTI/4-306
|
| 0.021
| 303
|
|
| XYLB_BUTFI/4-291
|
| 0.023
| 288
|
|
| Q82P90_STRAW/37-336
|
| 0.032
| 300
|
|
| Q8A3V2_BACTN/35-295
|
| 0.043
| 261
|
|
| Q9KBQ8_BACHD/8-311
|
| 0.067
| 304
|
|
| Q97IW1_CLOAB/6-309
|
| 0.068
| 304
|
|
| O52575_SELRU/3-304
|
| 0.074
| 302
|
|
| XYNB_BACPU/3-301
|
| 0.14
| 299
|
|
| Q8EPL4_OCEIH/6-297
|
| 0.27
| 292
|
|
| O52729_9BACI/3-301
|
| 0.35
| 299
|
|
| Q92P74_RHIME/5-303
|
| 0.36
| 299
|
|
| Q9KXY8_STRCO/30-319
|
| 0.37
| 290
|
|
| Q8P3G6_XANCP/43-335
|
| 0.42
| 293
|
|
| Q9A9J1_CAUCR/6-306
|
| 0.47
| 301
|
|
| Q8CWF7_OCEIH/4-302
|
| 0.48
| 299
|
|
| Q8PE34_XANCP/46-319
|
| 0.56
| 274
|
|
| Q9RI60_STRCO/4-282
|
| 0.57
| 279
|
|
| Q9A4M8_CAUCR/35-330
|
| 0.7
| 296
|
|
| Q97DM1_CLOAB/2-300
|
| 0.73
| 299
|
|
| Q8A6K8_BACTN/42-323
|
| 0.75
| 282
|
|
| YAGH_ECOLI/3-303
|
| 1.3
| 301
|
|
| Q9A9Z8_CAUCR/61-333
|
| 1.3
| 273
|
|
| Q8PBE4_XANCP/26-318
|
| 2
| 293
|
|
| Q93J96_STRCO/52-335
|
| 2.3
| 284
|
|
| Q8P3K7_XANCP/60-332
|
| 3.9
| 273
|
SECTION II: MOTIF DIAGRAMS
- The ordering and spacing of all non-overlapping motif occurrences
are shown for each high-scoring sequence listed in Section I.
- A motif occurrence is defined as a position in the sequence whose
match to the motif has POSITION p-value less than 0.0001.
- The POSITION p-value of a match is the probability of
a single random subsequence of the length of the motif
scoring at least as well as the observed match.
- For each sequence, all motif occurrences are shown unless there
are overlaps. In that case, a motif occurrence is shown only if its
p-value is less than the product of the p-values of the other
(lower-numbered) motif occurrences that it overlaps.
- The table also shows the E-value of each sequence.
- Spacers and motif occurences are indicated by
- Spacers and motif occurences are indicated by
- Spacers and motif occurences are indicated by
- occurrence of motif `n' with p-value less than 0.0001.
- Sequences longer than 1000 are not shown to scale and are indicated by thicker lines.
| Links | Name | Expect | Motifs
|
|---|
|
| Q97TI6_CLOAB/24-307
| 5.9e-12
|
|
|
| Q8A1I6_BACTN/28-326
| 1.9e-08
|
|
|
| Q81ZV8_STRAW/441-719
| 5e-08
|
|
|
| Q8A1Z2_BACTN/337-620
| 1e-06
|
|
|
| Q82P89_STRAW/52-348
| 8.2e-05
|
|
|
| Q8A3Q4_BACTN/26-309
| 9.9e-05
|
|
|
| Q8A0C6_BACTN/25-303
| 0.00011
|
|
|
| Q9K6P5_BACHD/5-295
| 0.0023
|
|
|
| Q8A1K5_BACTN/22-288
| 0.0028
|
|
|
| Q9CFH1_LACLA/4-305
| 0.017
|
|
|
| O30426_CALSA/54-321
| 0.018
|
|
|
| Q8Z9F3_SALTI/4-306
| 0.021
|
|
|
| XYLB_BUTFI/4-291
| 0.023
|
|
|
| Q82P90_STRAW/37-336
| 0.032
|
|
|
| Q8A3V2_BACTN/35-295
| 0.043
|
|
|
| Q9KBQ8_BACHD/8-311
| 0.067
|
|
|
| Q97IW1_CLOAB/6-309
| 0.068
|
|
|
| O52575_SELRU/3-304
| 0.074
|
|
|
| XYNB_BACPU/3-301
| 0.14
|
|
|
| Q8EPL4_OCEIH/6-297
| 0.27
|
|
|
| O52729_9BACI/3-301
| 0.35
|
|
|
| Q92P74_RHIME/5-303
| 0.36
|
|
|
| Q9KXY8_STRCO/30-319
| 0.37
|
|
|
| Q8P3G6_XANCP/43-335
| 0.42
|
|
|
| Q9A9J1_CAUCR/6-306
| 0.47
|
|
|
| Q8CWF7_OCEIH/4-302
| 0.48
|
|
|
| Q8PE34_XANCP/46-319
| 0.56
|
|
|
| Q9RI60_STRCO/4-282
| 0.57
|
|
|
| Q9A4M8_CAUCR/35-330
| 0.7
|
|
|
| Q97DM1_CLOAB/2-300
| 0.73
|
|
|
| Q8A6K8_BACTN/42-323
| 0.75
|
|
|
| YAGH_ECOLI/3-303
| 1.3
|
|
|
| Q9A9Z8_CAUCR/61-333
| 1.3
|
|
|
| Q8PBE4_XANCP/26-318
| 2
|
|
|
| Q93J96_STRCO/52-335
| 2.3
|
|
|
| Q8P3K7_XANCP/60-332
| 3.9
|
|
| SCALE
|
| | |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| 1 |
25 |
50 |
75 |
100 |
125 |
150 |
175 |
200 |
225 |
250 |
275 |
|
|---|
SECTION III: ANNOTATED SEQUENCES
- The positions and p-values of the non-overlapping motif occurrences
are shown above the actual sequence for each of the high-scoring
sequences from Section I.
- A motif occurrence is defined as a position in the sequence whose
match to the motif has POSITION p-value less than 0.0001 as
defined in Section II.
- For each sequence, the first line specifies the name of the sequence.
- The second (and possibly more) lines give a description of the
sequence.
- Following the description line(s) is a line giving the length,
combined p-value, and E-value of the sequence as defined in Section I.
- The next line reproduces the motif diagram from Section II.
- The entire sequence is printed on the following lines.
- Motif occurrences are indicated directly above their positions in the
sequence on lines showing
- the motif number of the occurrence,
- the position p-value of the occurrence,
- the best possible match to the motif, and
- columns whose match to the motif has a positive score (indicated
by a plus sign).
Q97TI6_CLOAB/24-307
LENGTH = 284 COMBINED P-VALUE = 1.61e-13 E-VALUE = 5.9e-12
DIAGRAM: 96-[3]-67-[2]-4-[3]-7-[1]-25
[3]
8.8e-07
HELCYMTSDNPMGPFTYQGHI
++ +++ ++++++
76 QCIPRNGKFYYYVPVTQKSGGMAIGVAVSNSPTGPFVDALGHPLAYTGTGDIDPTVFIDNDGQAYLYWGNPNLYY
[2] [3]
2.1e-05 1.3e-11
HRFFEASWMHKYNGKYYFSYCI HELCYMTSDNPMGPF
+ ++ + ++ ++ + + + ++++++++
151 VKLNQDMISYSGKIVQVPLTTAGFGVRKGNSSRPTLYEEGPWFYKRNGMYYMVYAAGGIPEYISYSTSKSPTGPW
[1]
4.8e-08
TYQGHI WNNHHAIFEFKNEWYLFHHRC
+++++ +++ + +++ + +++
226 YYKGVIMPSQGRSFTNHPGVIDFKGNSYFFYHNGALPGGSGFTRSVCIEQFKYNADGTF
Q8A1I6_BACTN/28-326
LENGTH = 299 COMBINED P-VALUE = 5.18e-10 E-VALUE = 1.9e-08
DIAGRAM: 101-[3]-128-[1]-28
[3]
4.4e-09
HELCYMTSDNPMGPFTYQGHI
++ ++ ++++++++ +
76 CIEEKKIDGKYKYFFYYSANPTTNKGKQIGVAVADSPTGPFTDLGKPIITSSPTGRGQQIDVDVFTDPVSGKSYL
[1]
6.5e-08
WNNHHAIFEFKNEWYLFHHRC
+ + + ++++++++
226 PLGPIEVAKEPIVLIQNPKEEIYGPAHNSILQVPGKDKWYIVYHRINKNHLNDGPGWHREVCIDRMEFNPDGTI
Q81ZV8_STRAW/441-719
LENGTH = 279 COMBINED P-VALUE = 1.36e-09 E-VALUE = 5e-08
DIAGRAM: 66-[2]-1-[3]-28-[1]-7-[2]-7-[3]-10-[1]-32
[2]
2.9e-05
HRFFEASWM
++ +
1 TRSPVLPGLYADPDIQYLDGRYWIYPTTDGFPGWSGTRFKAFSSKDLVHWKDHGVILDLGPDVTWADKNAWAPAI
[3] [1]
9.1e-07 9.9e-05
HKYNGKYYFSYCI HELCYMTSDNPMGPFTYQGHI WNNHHAIFEFKN
+++++ + ++ ++ +++ ++++ + + + + +
76 AERDGKYYFYFCAEQQIGVAVADSPAGPFKDALGKPLVAKGKLAGQMIDPAVFTDDDGTSYLYWGNGHGYVVPLN
[2] [3]
2.6e-06 3.3e-08
EWYLFHHRC HRFFEASWMHKYNGKYYFSYCI HELCYMTSDNPMGPFTYQGHI
+ + + + + + + +++++ + ++++ ++ ++ + ++ +
151 DDMVSYDATKVKDITQPDFREGSFVVERQGTYYFMWSEDDTGSENYHVSYATGPSPLGPWTKRGTILSKRPEYGI
[1]
2.4e-06
WNNHHAIFEFKNEWYLFHHRC
++ ++++++ + +
226 KGTGHHSVVNVPGTDDWYIVYHRFALSGPGKAGGDGTHRETTIDRMTFAADGTI
Q8A1Z2_BACTN/337-620
LENGTH = 284 COMBINED P-VALUE = 2.79e-08 E-VALUE = 1e-06
DIAGRAM: 6-[2]-34-[2]-8-[3]-55-[2]-51-[1]-22
[2] [2]
1.3e-06 1.3e-05
HRFFEASWMHKYNGKYYFSYCI HRFFEASWMHKYN
+ ++ + + + +++ + + ++ + + +
1 YANPVINFSLPDPTIIKGDDEYYYLYATESIKNVPIHRSRDLVNWYYVGTAFTDATRPNFEPKGRIWAPDINKIG
[3]
2.5e-07
GKYYFSYCI HELCYMTSDNPMGPFTYQGHI
+++ ++ ++ ++ + + ++++ +
76 DKYVMYYSMSTWGGEWTCGIGIATADKPEGPFTDLGKLFRSNEINIQNCIDPFYIEDNGKKYLFWGSFHGIYGTE
[2]
2.1e-05
HRFFEASWMHKYNGKYYFSYCI
+ +++ + ++ ++
151 LTDDGLSLKKGAPIEQIAGTAYEGTYIHKRDGYYYLFASIGRCCEGLKSTYTTVVGRSKNLFGPYVDKKGRSMSD
[1]
1.6e-05
WNNHHAIFEFKNEWYLFHHRC
+ + + ++ ++++
226 NHHEILIQKNKAFVGPGHNSELVTDKKGNDWMFYHAVSVANPEGRVLMMDRVQWKGGWP
Q82P89_STRAW/52-348
LENGTH = 297 COMBINED P-VALUE = 2.21e-06 E-VALUE = 8.2e-05
DIAGRAM: 6-[2]-32-[2]-42-[1]-152
[2] [2]
8.2e-06 2.5e-07
HRFFEASWMHKYNGKYYFSYCI HRFFEASWMHKYNGK
++++ +++ ++ + + ++ ++ +++
1 YTNPVKAQKGADPWLEYYNGNYYLVTTSFTNELTMRKSPTLAGLATAPSVQIWSDTTSGRNANFWAPEIHFFNGK
[1]
4.5e-05
YYFSYCI WNNHHAIFEFKNEWYLFHHRC
+ ++ + ++ ++ + +++
76 WYLYYSGAQSGAACCDTQRTHVLESAGADPMGPYTYKNSLTGSNLNPGGWLIDASVLQYNSKLYLVGSGSINGST
Q8A3Q4_BACTN/26-309
LENGTH = 284 COMBINED P-VALUE = 2.67e-06 E-VALUE = 9.9e-05
DIAGRAM: 62-[2]-8-[3]-55-[2]-94
[2]
1.3e-05
HRFFEASWMHKYN
++ + + +
1 YKNPVVNYSLPDPSVIRAEDGYFYLYATEDIRNLPIHRSKDLIKWESVGTAFTDETRPTFEPKGNLWAPDINKIG
[3]
3.1e-06
GKYYFSYCI HELCYMTSDNPMGPFTYQGHI
+++ ++ ++ ++ + + +++ +
76 DKYVLYYSMSCWGGEWTCGIGVATADKPEGPFVDHGMMFRSNEIGVQNSIDPFYIEDGGRKYMFWGSFRGIYGIE
[2]
2.4e-07
HRFFEASWMHKYNGKYYFSYCI
+ ++++++ ++ ++
151 LTADGLKVKSGADKKQIAGTAYEGTYIHKKNGYYYLFASTGTCCEGLKSTYQTVVGRSSSLWGPYLDKQGRSMLD
Q8A0C6_BACTN/25-303
LENGTH = 279 COMBINED P-VALUE = 2.90e-06 E-VALUE = 0.00011
DIAGRAM: 89-[3]-169
[3]
3.1e-08
HELCYMTSDNPMGPFTYQGHI
++ ++++++ ++ + +
76 VYCYYTARQKSTGISYIGVATSDSPLHEFTDHGPIVEYGKEAIDAFIYDDNGQLYISWKAYGLDTRPIELLGCKL
Q9K6P5_BACHD/5-295
LENGTH = 291 COMBINED P-VALUE = 6.14e-05 E-VALUE = 0.0023
DIAGRAM: 6-[2]-151-[2]-41-[1]-28
[2]
2.0e-07
HRFFEASWMHKYNGKYYFSYCI
+ + ++++ ++ ++ ++
1 IQNPILPGFHPDPSIVRVGDDYYIATSTFEWFPGVRIHHSRDLKHWRFVSSPLTRTSQLDMKGNMNSGGIWAPCL
[2]
8.0e-05
HRFFEASWMHKYNGKYYFSYCI
+ + + + ++ + ++
151 PFAGIILQEYSEAEQKLVGPVKNIYKGTDIQLTEGPHLYKKDGYYYLLVAEGGTEYEHAATLARSQSIDGPYETD
[1]
7.1e-05
WNNHHAIFEFKNEWYLFHHRC
+++ ++ + + +
226 PSYPLVTSTGQPELALQKAGHGSLVETQNGEWYLAHLCGRPLKGKYCTLGRETAIQKVNWTEDGWL
Q8A1K5_BACTN/22-288
LENGTH = 267 COMBINED P-VALUE = 7.56e-05 E-VALUE = 0.0028
DIAGRAM: 56-[2]-144-[1]-24
[2]
4.4e-06
HRFFEASWMHKYNGKYYFS
++ + ++ ++++
1 YPKVVLSGDYPDPSVMRDGEDYYMTHSPFYYAPGFLIWHSRDLMNWEPVCRVMPEYEGSAMAPDLLKYKGKYYIY
YCI
+
76 YPAKGTNWVIWANDIKGPWSKPIDLKVSGIDPGHIADQEGNRYLYVDKGEVIRLTDDGLATIGQKQKVYEGWRYP
[1]
2.0
WNN
151 NHWETECMCLESPKLNYHNGYYYLTSAQGGTAGPATSHMAVAARSKSVTGPWENSPYNPVVHTYSAHDNWWSKGH
e-05
HHAIFEFKNEWYLFHHRC
+ ++ + +++++
226 GTLIDDVNGNWWIVYHAYAKGYHTLGRSTLIEPIEWTADGWY
Q9CFH1_LACLA/4-305
LENGTH = 302 COMBINED P-VALUE = 4.69e-04 E-VALUE = 0.017
DIAGRAM: 6-[2]-274
[2]
1.6e-07
HRFFEASWMHKYNGKYYFSYCI
+ + ++++ ++++ ++
1 IQNPILPGFNADPSIIRVEDTYYIANSTFEWFPGVRLHESKDLEHWSLLPSPLSTTTLLDMRGNSASGGIWAPDL
O30426_CALSA/54-321
LENGTH = 268 COMBINED P-VALUE = 4.88e-04 E-VALUE = 0.018
DIAGRAM: 73-[1]-23-[2]-29-[2]-78
[1
4.
WN
+
1 SSNPIILSDIPDPDIIRVGNDYYMVSTTMHLTPGVPIMHSTDLVNWRIIGYVYDRLEDNDAHNLKNGMNIYGKGQ
] [2]
1e-05 1.1e-05
NHHAIFEFKNEWYLFHHRC HRFFEASWMHKYNGKYYFSYCI
+ ++++ ++ + ++ + + +++ + ++
76 WAPCIRYYKGKFYVLFGALDTGKTYLFSSKNITGPWERVEFNEYLHDPSLLFDDNGKAYIIYGGSEIRVKELMPD
[2]
2.2e-05
HRFFEASWMHKYNGKYYFSYCI
+ + + + +++++
151 LKAINLKGLNKVIIKSKIDGLEEGSHAYKINGKYYITTIRWEKGGIREECVYRADKIDGPYEGRVVLSDTLGYKN
Q8Z9F3_SALTI/4-306
LENGTH = 303 COMBINED P-VALUE = 5.55e-04 E-VALUE = 0.021
DIAGRAM: 5-[2]-34-[2]-16-[3]-183
[2] [2]
1.7e-05 3.2e-05
HRFFEASWMHKYNGKYYFSYCI HRFFEASWMHKYNG
+ ++ + + ++++ + + ++ ++ ++
1 WPNPFIEQRADPFILRDGSDYYFIASVPEYDRLEIRRADSLEGLRAADPVVVWRKPESGPMSQLIWAPEMHRING
[3]
6.3e-05
KYYFSYCI HELCYMTSDNPMGPFTYQGHI
+ + + + + ++ + ++ +
76 KWYIYFAATHTQALDKLGMFQHRMFALECADADPLTGKWTEKGQIKTPFDTFSLDATTFYHQGKQWYLWAQKAPD
XYLB_BUTFI/4-291
LENGTH = 288 COMBINED P-VALUE = 6.20e-04 E-VALUE = 0.023
DIAGRAM: 6-[2]-37-[2]-201
[2] [2]
2.8e-06 7.5e-05
HRFFEASWMHKYNGKYYFSYCI HRFFEASWMH
+ ++++ +++ + ++ + ++ ++
1 ANNPILKGFYPDPSICRKGDDFYLVCSSFVYAPGVPIFHTKDLAHFEQIGNILDRESQLPLSGDISRGIFAPTIR
KYNGKYYFSYCI
++ + +
76 EHNGIFYMITTNVSSGGNFIVTAKDPAGPWSEPYYLGEDEAPGIDPSLFFDDDGKCYYVGTRPNPDGVRYNGDWE
Q82P90_STRAW/37-336
LENGTH = 300 COMBINED P-VALUE = 8.71e-04 E-VALUE = 0.032
DIAGRAM: 5-[2]-222-[1]-30
[2]
1.4e-05
HRFFEASWMHKYNGKYYFSYCI
+ ++ + + + +++ +
1 FTNPLAEKRADPHIFKHTDGYYYFTATVPEYDRIVLRRATTLQGLATAPETTIWTKHASGVMGAHIWAPEIHFID
[1]
2.1e-05
WNNHHAIFEFKNEWYLFHHRC
+ + + + +++++
226 NAASWTKSSQPVFKTSEATGQYGPGHNSFTVSEDGKSDILVYHDRNYKDISGDPLNDPNRRTRLQKVYWNADGTP
Q8A3V2_BACTN/35-295
LENGTH = 261 COMBINED P-VALUE = 1.17e-03 E-VALUE = 0.043
DIAGRAM: 66-[2]-102-[3]-50
[2]
9.7e-05
HRFFEASWM
++++
1 YINPILNADYSDPDVIRVGDKYYMVNSDFHYMGMPVLESDDMINWKIISQVYRRLDFPDWDTNGNYGGGSWAPSI
HKYNGKYYFSYCI
+ ++ ++
76 RHHDGKFWIYFCTPREGLMMSTATDPHGPWSPLHCVKRIGGWEDPCPIWDDNGQAYLGRSQLGAGPIILHKMSAD
[3]
9.5e-05
HELCYMTSDNPMGPFTYQGHI
+ +++ +++ + +
151 GRTLEDDGHVIYTGPVAEGTKFHKRDGYYYISIPEGGVGEGWQTILRSKNIYGPYEKKVVLEKGSTNVNGPHQGA
Q9KBQ8_BACHD/8-311
LENGTH = 304 COMBINED P-VALUE = 1.82e-03 E-VALUE = 0.067
DIAGRAM: 188-[1]-44-[1]-30
[1]
5.1e-05
WNNHHAIFEFKNEWYLFHHRC
+ ++ +++ + + +
151 IEGNSNLYIAEMENPWTIKGEQVMLSKPEFDWEVIGYKVNEGPAVIKRNGKVFIAYSASATDHHYCMGLLWANEE
[1]
2.1e-05
WNNHHAIFEFKNEWYLFHHRC
+ + + + +++++
226 ADLLDPASWTKSPTPVFQTSEENGQYGPGHNSFTVTEDGKHDVLVYHARSYKEIEGDPLYDPNRHARLKLFTWDK
Q97IW1_CLOAB/6-309
LENGTH = 304 COMBINED P-VALUE = 1.83e-03 E-VALUE = 0.068
DIAGRAM: 5-[2]-159-[2]-45-[1]-30
[2]
1.2e-05
HRFFEASWMHKYNGKYYFSYCI
++ + + ++ +++ +
1 ILNPIIIQRADPMIYKHNDGYYYFTASVPEYDRIEVRKAKTIEGLRNAEPVDVWRRHESGEMSNLIWAPEIHFIN
[2]
3.6e-05
HRFFEASWMHKYNGKYYFSYCI
+ + +++++ ++
151 IKGHSNIYIAEMENPWTLKTKPVMLTKPELEWEIKGFWVNEGPAVLKKNGKIFITYSASATDVNYCIGMLTAEEN
[1]
2.9e-05
WNNHHAIFEFKNEWYLFHHRC
+ + + + +++++
226 SNLLDKNSWTKSQTPVFKTSMENHQYGPGHNSFTVSEDGKHDVIVYHARNYTEIKGDPLYDPNRHTRAQIINWRE
O52575_SELRU/3-304
LENGTH = 302 COMBINED P-VALUE = 2.00e-03 E-VALUE = 0.074
DIAGRAM: 6-[2]-274
[2]
2.1e-06
HRFFEASWMHKYNGKYYFSYCI
+ ++++ ++ ++ ++
1 IQNPVLKGFNPDPSIVRAGDDYYIATSTFEWFPGVQIHHSKDLVHWHLVAHPLSTTEFLDMKGNPDSGGIWAPDL
XYNB_BACPU/3-301
LENGTH = 299 COMBINED P-VALUE = 3.69e-03 E-VALUE = 0.14
DIAGRAM: 6-[2]-151-[2]-98
[2]
1.6e-05
HRFFEASWMHKYNGKYYFSYCI
+ ++++ + ++ ++
1 ITNPVLKGFNPDPSICRAGEDYYMAVSTFEWFPGVQIYHSKDLIHWRLAARPLQKTSQLDMKGNPDSGGVWAPCL
[2]
8.6e-05
HRFFEASWMHKYNGKYYFSYCI
+ +++ + ++ ++
151 SFAGIALQEYSVSEKKLVGERKVIFKGTPIKLTEAPHLYYINDVYYLLTAEGGTRYEHAATIARSSRIDGPYEVH
Q8EPL4_OCEIH/6-297
LENGTH = 292 COMBINED P-VALUE = 7.39e-03 E-VALUE = 0.27
DIAGRAM: 6-[2]-38-[2]-92-[2]-90
[2] [2]
1.1e-05 7.5e-05
HRFFEASWMHKYNGKYYFSYCI HRFFEASWM
+ + ++++ ++ ++ + ++ +
1 FKNPIIPGFYPDPSICRVDEDYYLVTSTFEYFPGVPIFHSRDLVNWNQIGHVLDRPSQLNLNGIPCSRGIYAPTI
HKYNGKYYFSYCI
+ ++ + +
76 RYHNGIFYMITTFVESRTGLRRDFYVTAEDPGGPWSDPNWLGPTPGIDPSLFFDDNGKVYYTANRQPPDGQEYPK
[2]
3.2e-05
HRFFEASWMHKYNGKYYFSYCI
+++ + + ++ ++
151 HMEIYLQELDLESKQLIGDKYSLWDGALKNAHAQEAPHLYKVNGWYYLMIAEGGTGFTHAVTIARSRSLLGPYES
O52729_9BACI/3-301
LENGTH = 299 COMBINED P-VALUE = 9.51e-03 E-VALUE = 0.35
DIAGRAM: 6-[2]-271
[2]
1.6e-05
HRFFEASWMHKYNGKYYFSYCI
+ ++++ + ++ ++
1 IINPVLKGFNPDPSICRVGEDYYIAVSTFEWFPGVQIHHSKDLVNWRLIAHPLQRVSQLDMKGNPDSGGVWAPCL
Q92P74_RHIME/5-303
LENGTH = 299 COMBINED P-VALUE = 9.85e-03 E-VALUE = 0.36
DIAGRAM: 6-[2]-271
[2]
1.8e-06
HRFFEASWMHKYNGKYYFSYCI
+ + ++++ + ++ ++
1 IRNPILPGFNPDPSICRVGEDYYIATSTFEWYPGVQIHHSRDLVNWRLVRRPLERASQLDMRGNPDSCGVWAPCL
Q9KXY8_STRCO/30-319
LENGTH = 290 COMBINED P-VALUE = 1.00e-02 E-VALUE = 0.37
DIAGRAM: 62-[2]-92-[2]-92
[2]
9.1e-05
HRFFEASWMHKYN
++ + +
1 PGRVTGSVVTHDPTMIRTSSGQYRLYATGGGISSKASSDRTAFSAGADAFGSRPGWWSRYSSVPEAWAPDISYHG
GKYYFSYCI
+++ ++
76 GKYLMYYSVSSFGSNTSAIGLAGSTTGAPGSWSDYGIVYTSGSASDYNAIDPNLFVDDDGTWWLSFGSWWTGIKM
[2]
2.5e-05
HRFFEASWMHKYNGKYYFSYCI
+++ + ++ ++ +
151 IRIDPATGKQLASDTARRSLASRPTGTKAVEAPYVVKRNGYYYLFASYDTCCAGTGSTYKVKVGRATSVTGPYRD
Q8P3G6_XANCP/43-335
LENGTH = 293 COMBINED P-VALUE = 1.14e-02 E-VALUE = 0.42
DIAGRAM: 6-[2]-265
[2]
1.6e-05
HRFFEASWMHKYNGKYYFSYCI
+ ++++ + ++ ++
1 YRNPILAGFYPDPSITRVGERYYLVNSTFAYFPAIPVFESTDLVHWTQVGNVVERREQLDYDGLGVSRGMFAASI
Q9A9J1_CAUCR/6-306
LENGTH = 301 COMBINED P-VALUE = 1.26e-02 E-VALUE = 0.47
DIAGRAM: 6-[2]-160-[2]-91
[2]
1.9e-06
HRFFEASWMHKYNGKYYFSYCI
+ + ++++ + ++ ++
1 IRNPVLRGFNPDPSIVRVGEDYYIATSTFEWFPGVQIHHSRDLRNWRLIGRPLRRPSQLNMMGDPDGCGVWAPCL
[2]
5.8e-05
HRFFEASWMHKYNGKYYFSYCI
+ +++ + + + ++
151 LWDHRPGRNRFAGIVLQAFSVAEQRLVGERKVIFEGTAIGLTEAPHLYKRDGWYYLLTAEGGTGWGHAATLARSR
Q8CWF7_OCEIH/4-302
LENGTH = 299 COMBINED P-VALUE = 1.30e-02 E-VALUE = 0.48
DIAGRAM: 6-[2]-151-[2]-98
[2]
1.6e-05
HRFFEASWMHKYNGKYYFSYCI
+ ++++ + ++ ++
1 IKNPILTGFNPDPSICRAGEDYYIAVSTFEWFPGVGIYHSRDLKNWKLVSRPLNRLSQLNMMGNPNSGGVWAPAL
[2]
8.6e-06
HRFFEASWMHKYNGKYYFSYCI
+ +++ + + ++ ++
151 PFYGIVLQEYDSVKGKLVGKKEIIFKGTDVKLTEAPHLYKINDYYYLLTAEGGTRYDHQATIARSKNLHGPYEVH
Q8PE34_XANCP/46-319
LENGTH = 274 COMBINED P-VALUE = 1.50e-02 E-VALUE = 0.56
DIAGRAM: 274
Q9RI60_STRCO/4-282
LENGTH = 279 COMBINED P-VALUE = 1.53e-02 E-VALUE = 0.57
DIAGRAM: 6-[2]-251
[2]
2.0e-05
HRFFEASWMHKYNGKYYFSYCI
+ +++ ++ ++ ++
1 YDNPVISGFHPDPSVCRVGDDYYLVCSSFEYFPGLPLFHSKDLVHWEQIGNVLDRPGQLPLPVPGAKASGGLYAP
Q9A4M8_CAUCR/35-330
LENGTH = 296 COMBINED P-VALUE = 1.90e-02 E-VALUE = 0.7
DIAGRAM: 182-[2]-92
[2]
4.7e-05
HRFFEASWMHKYNGKYYFSYCI
+ + + + ++ + ++
151 RALWIHEYDPKTQTTVGPATLLLDKGVDPATKPIWPEGPHILKKDGWYYLTAAEGGTAEGHSQVVLRSKSVTGPY
Q97DM1_CLOAB/2-300
LENGTH = 299 COMBINED P-VALUE = 1.96e-02 E-VALUE = 0.73
DIAGRAM: 6-[2]-271
[2]
1.2e-05
HRFFEASWMHKYNGKYYFSYCI
+ + ++++ ++ ++
1 IKNPILRGFNPDPSICRADTDYYIATSTFEWFPGVQIHHSKDLVNWHLVAHPLNRTSLLDMKGNPNSGGIWAPDL
Q8A6K8_BACTN/42-323
LENGTH = 282 COMBINED P-VALUE = 2.02e-02 E-VALUE = 0.75
DIAGRAM: 88-[3]-173
[3]
2.8e-05
HELCYMTSDNPMGPFTYQGHI
+++++ ++++
76 YYLFTTFSNAGVKRGTSILVSDSPKGPFTPLVNKAITPSGWMCLDGSLYIDKEGNPWLLFCREWLETIDGEIYAQ
YAGH_ECOLI/3-303
LENGTH = 301 COMBINED P-VALUE = 3.44e-02 E-VALUE = 1.3
DIAGRAM: 6-[2]-273
[2]
1.8e-05
HRFFEASWMHKYNGKYYFSYCI
+ ++++ + ++ ++
1 ITNPILTGFNPDPSLCRQGEDYYIATSTFEWFPGVRIYHSRDLKNWSLVSTPLDRVSMLDMKGNPDSGGIWAPCL
Q9A9Z8_CAUCR/61-333
LENGTH = 273 COMBINED P-VALUE = 3.52e-02 E-VALUE = 1.3
DIAGRAM: 6-[2]-245
[2]
1.8e-05
HRFFEASWMHKYNGKYYFSYCI
++++ + + ++ ++
1 FLNPILTGDRPDPSILKDGADYYMTHSSFDAYPGLLIWHSRDLVNWTPVTTTLKTNVGSIWAPELCKHKGRYYIY
Q8PBE4_XANCP/26-318
LENGTH = 293 COMBINED P-VALUE = 5.29e-02 E-VALUE = 2
DIAGRAM: 67-[2]-204
[2]
3.0e-05
HRFFEASW
+ ++ ++
1 YRNPVLAGFYPDPSAIRVGNAFYLVTSSFGYFPGLPVFKSSDLVHWIQIGNAIDRPGQINYGNDALTRGLFAASI
MHKYNGKYYFSYCI
+ + + +
76 SHHDGTFYIANTCFYCDGGNFLITAKDPAGPWSDPIWLDAKGIDPSLFFDDDGSAWLVNNDVPAGTLRYDGHRAI
Q93J96_STRCO/52-335
LENGTH = 284 COMBINED P-VALUE = 6.21e-02 E-VALUE = 2.3
DIAGRAM: 115-[2]-147
[2]
9.1e-05
HRFFEASWMHKYNGKYYFSYCI
+ + ++ ++ + ++
76 YYTADDGVDDHHRLYVLESERDDPTGPYHFTAKLAPPNHADDFAIDAGILQLGGRLYLAYSGINQYQHNGINIAP
Q8P3K7_XANCP/60-332
LENGTH = 273 COMBINED P-VALUE = 1.05e-01 E-VALUE = 3.9
DIAGRAM: 273
Debugging Information
CPU: kodomo-count
Time 0.032002 secs.
mast ./memeout.txt -d ./seed.fasta -ev 10.000000 -mt 0.000100
Button Help
Links to Entrez database at NCBI
Links to sequence scores (section I)
Links to motif diagrams (section II)
Links to sequence/motif annotated alignments (section III)
This information