BLASTN 2.2.31+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: db.fasta 1,870 sequences; 143,726,002 total letters Query= CP014225.1:complement(926804-928359)|16S_rRNA|Escherichia coli str. K-12 substr. MG1655 strain K-12 Length=1556 Score E Sequences producing significant alignments: (Bits) Value NW_007931121.1 Drosophila melanogaster chromosome X; Y rDNA seq... 55.4 5e-006 NW_001846686.1 Drosophila melanogaster 211000022279722 sequence 55.4 5e-006 NW_001846517.1 Drosophila melanogaster chromosome X; Y 21100002... 55.4 5e-006 NW_001846251.1 Drosophila melanogaster 211000022279343 sequence 55.4 5e-006 NW_001846980.1 Drosophila melanogaster chromosome X 21100002227... 55.4 5e-006 NC_004354.4 Drosophila melanogaster chromosome X 55.4 5e-006 NW_001845385.1 Drosophila melanogaster chromosome X; Y 21100002... 51.8 6e-005 NW_001846742.1 Drosophila melanogaster chromosome X; Y 21100002... 37.4 1.2 NW_001846751.1 Drosophila melanogaster 211000022278750 sequence 37.4 1.2 NW_001845546.1 Drosophila melanogaster 211000022278282 sequence 37.4 1.2 NW_001844937.1 Drosophila melanogaster chromosome X 21100002227... 37.4 1.2 NT_033779.5 Drosophila melanogaster chromosome 2L 35.6 4.4 > NW_007931121.1 Drosophila melanogaster chromosome X; Y rDNA sequence Length=76973 Score = 55.4 bits (60), Expect = 5e-006 Identities = 38/43 (88%), Gaps = 0/43 (0%) Strand=Plus/Plus Query 1494 AAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCA 1536 ||||||||||||||| ||||||| |||||||||| |||||| Sbjct 45433 AAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCA 45475 Score = 55.4 bits (60), Expect = 5e-006 Identities = 38/43 (88%), Gaps = 0/43 (0%) Strand=Plus/Plus Query 1494 AAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCA 1536 ||||||||||||||| ||||||| |||||||||| |||||| Sbjct 57914 AAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCA 57956 Score = 55.4 bits (60), Expect = 5e-006 Identities = 38/43 (88%), Gaps = 0/43 (0%) Strand=Plus/Plus Query 1494 AAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCA 1536 ||||||||||||||| ||||||| |||||||||| |||||| Sbjct 69617 AAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCA 69659 Score = 41.0 bits (44), Expect = 0.10 Identities = 57/80 (71%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 1330 CATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGCCACGGTGAATACGTTCCCGGG 1389 |||||| | ||||| | ||||| ||| ||| | | | ||| ||||| || | Sbjct 45240 CATGAACTTGGAATTCCCAGTAAGTGTGAGTCATTAACTCGCATTGATTACGTCCCTGCC 45299 Query 1390 CCTTGTACACACCGCCCGTC 1409 | |||||||||||||||||| Sbjct 45300 CTTTGTACACACCGCCCGTC 45319 Score = 41.0 bits (44), Expect = 0.10 Identities = 57/80 (71%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 1330 CATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGCCACGGTGAATACGTTCCCGGG 1389 |||||| | ||||| | ||||| ||| ||| | | | ||| ||||| || | Sbjct 57721 CATGAACTTGGAATTCCCAGTAAGTGTGAGTCATTAACTCGCATTGATTACGTCCCTGCC 57780 Query 1390 CCTTGTACACACCGCCCGTC 1409 | |||||||||||||||||| Sbjct 57781 CTTTGTACACACCGCCCGTC 57800 Score = 41.0 bits (44), Expect = 0.10 Identities = 57/80 (71%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 1330 CATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGCCACGGTGAATACGTTCCCGGG 1389 |||||| | ||||| | ||||| ||| ||| | | | ||| ||||| || | Sbjct 69424 CATGAACTTGGAATTCCCAGTAAGTGTGAGTCATTAACTCGCATTGATTACGTCCCTGCC 69483 Query 1390 CCTTGTACACACCGCCCGTC 1409 | |||||||||||||||||| Sbjct 69484 CTTTGTACACACCGCCCGTC 69503 Score = 37.4 bits (40), Expect = 1.2 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 517 GTGCCAGCAGCCGCGGTAAT 536 |||||||||||||||||||| Sbjct 44053 GTGCCAGCAGCCGCGGTAAT 44072 Score = 37.4 bits (40), Expect = 1.2 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 517 GTGCCAGCAGCCGCGGTAAT 536 |||||||||||||||||||| Sbjct 56534 GTGCCAGCAGCCGCGGTAAT 56553 Score = 37.4 bits (40), Expect = 1.2 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 517 GTGCCAGCAGCCGCGGTAAT 536 |||||||||||||||||||| Sbjct 68237 GTGCCAGCAGCCGCGGTAAT 68256 > NW_001846686.1 Drosophila melanogaster 211000022279722 sequence Length=1148 Score = 55.4 bits (60), Expect = 5e-006 Identities = 38/43 (88%), Gaps = 0/43 (0%) Strand=Plus/Minus Query 1494 AAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCA 1536 ||||||||||||||| ||||||| |||||||||| |||||| Sbjct 225 AAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCA 183 > NW_001846517.1 Drosophila melanogaster chromosome X; Y 211000022279555 sequence Length=1198 Score = 55.4 bits (60), Expect = 5e-006 Identities = 38/43 (88%), Gaps = 0/43 (0%) Strand=Plus/Minus Query 1494 AAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCA 1536 ||||||||||||||| ||||||| |||||||||| |||||| Sbjct 1083 AAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCA 1041 > NW_001846251.1 Drosophila melanogaster 211000022279343 sequence Length=1315 Score = 55.4 bits (60), Expect = 5e-006 Identities = 38/43 (88%), Gaps = 0/43 (0%) Strand=Plus/Plus Query 1494 AAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCA 1536 ||||||||||||||| ||||||| |||||||||| |||||| Sbjct 1265 AAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCA 1307 Score = 41.0 bits (44), Expect = 0.10 Identities = 57/80 (71%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 1330 CATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGCCACGGTGAATACGTTCCCGGG 1389 |||||| | ||||| | ||||| ||| ||| | | | ||| ||||| || | Sbjct 1069 CATGAACTTGGAATTCCCAGTAAGTGTGAGTCATTAACTCGCATTGATTACGTCCCTGCC 1128 Query 1390 CCTTGTACACACCGCCCGTC 1409 | |||||||||||||||||| Sbjct 1129 CTTTGTACACACCGCCCGTC 1148 > NW_001846980.1 Drosophila melanogaster chromosome X 211000022278704 sequence Length=1074 Score = 55.4 bits (60), Expect = 5e-006 Identities = 38/43 (88%), Gaps = 0/43 (0%) Strand=Plus/Minus Query 1494 AAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCA 1536 ||||||||||||||| ||||||| |||||||||| |||||| Sbjct 155 AAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCA 113 > NC_004354.4 Drosophila melanogaster chromosome X Length=23542271 Score = 55.4 bits (60), Expect = 5e-006 Identities = 38/43 (88%), Gaps = 0/43 (0%) Strand=Plus/Minus Query 1494 AAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCA 1536 ||||||||||||||| ||||||| |||||||||| |||||| Sbjct 23281043 AAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCA 23281001 Score = 55.4 bits (60), Expect = 5e-006 Identities = 38/43 (88%), Gaps = 0/43 (0%) Strand=Plus/Plus Query 1494 AAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCA 1536 ||||||||||||||| ||||||| |||||||||| |||||| Sbjct 23438834 AAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCA 23438876 Score = 51.8 bits (56), Expect = 6e-005 Identities = 37/43 (86%), Gaps = 0/43 (0%) Strand=Plus/Plus Query 1494 AAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCA 1536 ||||||||||||||| ||||||| | |||||||| |||||| Sbjct 23213121 AAGTCGTAACAAGGTTTCCGTAGGTGGACCTGCGGAAGGATCA 23213163 Score = 41.0 bits (44), Expect = 0.10 Identities = 57/80 (71%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 1330 CATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGCCACGGTGAATACGTTCCCGGG 1389 |||||| | ||||| | ||||| ||| ||| | | | ||| ||||| || | Sbjct 23212928 CATGAACTTGGAATTCCCAGTAAGTGTGAGTCATTAACTCGCATTGATTACGTCCCTGCC 23212987 Query 1390 CCTTGTACACACCGCCCGTC 1409 | |||||||||||||||||| Sbjct 23212988 CTTTGTACACACCGCCCGTC 23213007 Score = 41.0 bits (44), Expect = 0.10 Identities = 57/80 (71%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 1330 CATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGCCACGGTGAATACGTTCCCGGG 1389 |||||| | ||||| | ||||| ||| ||| | | | ||| ||||| || | Sbjct 23281236 CATGAACTTGGAATTCCCAGTAAGTGTGAGTCATTAACTCGCATTGATTACGTCCCTGCC 23281177 Query 1390 CCTTGTACACACCGCCCGTC 1409 | |||||||||||||||||| Sbjct 23281176 CTTTGTACACACCGCCCGTC 23281157 Score = 37.4 bits (40), Expect = 1.2 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 723 GGTGGCGAAGGCGGCCCCCTGGACGAAGAC 752 || || ||||| |||| ||||||||||||| Sbjct 2916709 GGGGGGGAAGGGGGCCGCCTGGACGAAGAC 2916738 Score = 37.4 bits (40), Expect = 1.2 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 517 GTGCCAGCAGCCGCGGTAAT 536 |||||||||||||||||||| Sbjct 23211755 GTGCCAGCAGCCGCGGTAAT 23211774 Score = 37.4 bits (40), Expect = 1.2 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Minus Query 517 GTGCCAGCAGCCGCGGTAAT 536 |||||||||||||||||||| Sbjct 23282362 GTGCCAGCAGCCGCGGTAAT 23282343 Score = 37.4 bits (40), Expect = 1.2 Identities = 28/33 (85%), Gaps = 0/33 (0%) Strand=Plus/Plus Query 1494 AAGTCGTAACAAGGTAACCGTAGGGGAACCTGC 1526 ||||||||||| ||| | ||||| |||||||| Sbjct 23290837 AAGTCGTAACAGGGTTTCTGTAGGTGAACCTGC 23290869 Score = 37.4 bits (40), Expect = 1.2 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 517 GTGCCAGCAGCCGCGGTAAT 536 |||||||||||||||||||| Sbjct 23432553 GTGCCAGCAGCCGCGGTAAT 23432572 Score = 37.4 bits (40), Expect = 1.2 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Minus Query 517 GTGCCAGCAGCCGCGGTAAT 536 |||||||||||||||||||| Sbjct 23456348 GTGCCAGCAGCCGCGGTAAT 23456329 > NW_001845385.1 Drosophila melanogaster chromosome X; Y 211000022278554 sequence Length=2916 Score = 51.8 bits (56), Expect = 6e-005 Identities = 37/43 (86%), Gaps = 0/43 (0%) Strand=Plus/Minus Query 1494 AAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCA 1536 ||||||||||||||| ||||||| | |||||||| |||||| Sbjct 2547 AAGTCGTAACAAGGTTTCCGTAGGTGGACCTGCGGAAGGATCA 2505 Score = 41.0 bits (44), Expect = 0.10 Identities = 57/80 (71%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 1330 CATGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGCCACGGTGAATACGTTCCCGGG 1389 |||||| | ||||| | ||||| ||| ||| | | | ||| ||||| || | Sbjct 2740 CATGAACTTGGAATTCCCAGTAAGTGTGAGTCATTAACTCGCATTGATTACGTCCCTGCC 2681 Query 1390 CCTTGTACACACCGCCCGTC 1409 | |||||||||||||||||| Sbjct 2680 CTTTGTACACACCGCCCGTC 2661 > NW_001846742.1 Drosophila melanogaster chromosome X; Y 211000022279222 sequence Length=1136 Score = 37.4 bits (40), Expect = 1.2 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 517 GTGCCAGCAGCCGCGGTAAT 536 |||||||||||||||||||| Sbjct 315 GTGCCAGCAGCCGCGGTAAT 334 > NW_001846751.1 Drosophila melanogaster 211000022278750 sequence Length=1134 Score = 37.4 bits (40), Expect = 1.2 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 517 GTGCCAGCAGCCGCGGTAAT 536 |||||||||||||||||||| Sbjct 14 GTGCCAGCAGCCGCGGTAAT 33 > NW_001845546.1 Drosophila melanogaster 211000022278282 sequence Length=2511 Score = 37.4 bits (40), Expect = 1.2 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 517 GTGCCAGCAGCCGCGGTAAT 536 |||||||||||||||||||| Sbjct 1340 GTGCCAGCAGCCGCGGTAAT 1359 > NW_001844937.1 Drosophila melanogaster chromosome X 211000022278498 sequence Length=13940 Score = 37.4 bits (40), Expect = 1.2 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Minus Query 517 GTGCCAGCAGCCGCGGTAAT 536 |||||||||||||||||||| Sbjct 13668 GTGCCAGCAGCCGCGGTAAT 13649 > NT_033779.5 Drosophila melanogaster chromosome 2L Length=23513712 Score = 35.6 bits (38), Expect = 4.4 Identities = 19/19 (100%), Gaps = 0/19 (0%) Strand=Plus/Minus Query 802 GTAGTCCACGCCGTAAACG 820 ||||||||||||||||||| Sbjct 5706573 GTAGTCCACGCCGTAAACG 5706555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 219240270452 Database: db.fasta Posted date: Feb 6, 2025 8:23 PM Number of letters in database: 143,726,002 Number of sequences in database: 1,870 Matrix: blastn matrix 2 -3 Gap Penalties: Existence: 5, Extension: 2