RID: CDWZX9JB014 Job Title:POLN_ABPVR Q9DSN9 Replicase polyprotein Program: BLASTP Query: POLN_ABPVR Q9DSN9 Replicase polyprotein (2.7.7.48) (3.4.22.-) ID: lcl|Query_8868767(amino acid) Length: 180 Database: swissprot Non-redundant UniProtKB/SwissProt sequences Sequences producing significant alignments: Scientific Common Max Total Query E Per. Acc. Description Name Name Taxid Score Score cover Value Ident Len Accession RecName: Full=Replicase polyprotein [Acute bee paralysis virus... Acute bee pa... NA 1217067 381 381 100% 2e-123 100.00 1906 Q9DSN9.1 RecName: Full=Replicase polyprotein; Contains: RecName:... Cricket para... NA 928300 129 129 86% 2e-35 41.29 1771 Q9IJX4.1 RecName: Full=Replicase polyprotein; Contains: RecName:... Drosophila C... NA 865617 129 129 93% 3e-35 40.24 1759 O36966.1 RecName: Full=RNA1 polyprotein; Contains: RecName:... Tomato torra... NA 686948 81.3 81.3 84% 2e-18 34.64 2158 A1XIP9.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Avian enceph... NA 475778 79.7 79.7 85% 8e-18 31.82 2134 Q9YLS4.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Avian enceph... NA 475780 79.3 79.3 85% 9e-18 31.82 2134 Q6WQ42.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Avian enceph... NA 475779 79.3 79.3 85% 9e-18 31.82 2134 Q6R325.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Aichi virus ... NA 650132 73.6 73.6 79% 1e-15 35.62 2432 O91464.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Human hepati... NA 470593 71.2 71.2 85% 6e-15 32.68 2228 Q9DWR1.4 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Foot-and-mou... NA 12113 70.1 70.1 86% 1e-14 31.88 2332 P03307.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... HPeV 5 strai... NA 122961 69.3 69.3 86% 2e-14 31.41 2188 Q9YID8.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Foot-and-mou... NA 12121 69.3 69.3 86% 3e-14 31.88 2327 P15072.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Foot-and-mou... NA 12120 69.3 69.3 86% 3e-14 31.88 2327 P03311.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Human hepati... NA 470423 68.6 68.6 84% 5e-14 32.24 2227 A3FMB2.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Human hepati... NA 12098 68.6 68.6 84% 5e-14 32.24 2227 P08617.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Human hepati... NA 12099 68.6 68.6 84% 5e-14 32.24 2227 P06441.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Human hepati... NA 474341 68.2 68.2 84% 6e-14 32.24 2228 A5LGW7.1 RecName: Full=RNA1 polyprotein; AltName: Full=Genome polyprote... Broad bean w... NA 649895 68.2 68.2 95% 8e-14 30.23 1842 Q76L40.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Human hepati... NA 470591 67.8 67.8 84% 8e-14 32.24 2225 Q5Y944.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Foot-and-mou... NA 12112 67.8 67.8 86% 8e-14 31.25 2332 P03306.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Foot-and-mou... NA 12118 67.8 67.8 86% 9e-14 31.25 2332 P03305.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Human hepati... NA 12100 67.8 67.8 86% 9e-14 32.47 2227 P13901.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Human hepati... NA 470592 67.8 67.8 84% 9e-14 32.24 2227 Q8V0N6.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Foot-and-mou... NA 73481 67.8 67.8 86% 9e-14 31.25 2336 P49303.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Echovirus 22... NA 103911 67.4 67.4 86% 1e-13 30.77 2180 Q66578.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Simian hepat... NA 12102 67.4 67.4 82% 1e-13 32.65 2230 P14553.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Human hepati... NA 470422 67.4 67.4 84% 1e-13 32.24 2227 Q67825.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Foot-and-mou... NA 35292 67.4 67.4 86% 1e-13 31.88 2335 Q9Q2N9.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Foot-and-mou... NA 110195 67.0 67.0 86% 2e-13 31.25 2329 A2I7M2.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Foot-and-mou... NA 12114 66.6 66.6 86% 2e-13 31.25 2333 P03308.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Foot-and-mou... NA 12117 66.6 66.6 86% 2e-13 31.25 2328 P03310.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Foot-and-mou... NA 649897 66.6 66.6 86% 2e-13 31.25 2322 Q6PMV1.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Echovirus 23... NA 122962 65.5 65.5 86% 5e-13 32.05 2179 O73556.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Foot-and-mou... NA 12115 65.5 65.5 86% 5e-13 30.62 2333 P03309.2 RecName: Full=RNA1 polyprotein; AltName: Full=Genome polyprote... Bean-pod mot... NA 31715 65.5 65.5 84% 6e-13 33.55 1850 Q9YJU5.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... parechovirus B1 NA 1001061 64.7 64.7 86% 1e-12 31.82 2253 Q8JV21.1 RecName: Full=RNA1 polyprotein; AltName: Full=Genome polyprote... Cowpea sever... NA 31716 64.7 64.7 77% 1e-12 34.29 1858 P36312.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Seneca Valle... NA 686944 62.0 62.0 81% 8e-12 31.54 2181 Q155Z9.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... rhinovirus C15 NA 1418033 61.2 61.2 96% 2e-11 27.17 2153 E5D8F2.1 RecName: Full=Genome polyprotein; Contains: RecName:... Ectropis obl... NA 240555 61.2 61.2 89% 2e-11 26.51 2987 Q6UP17.1 RecName: Full=RNA1 polyprotein; AltName: Full=Genome polyprote... Broad bean w... NA 76875 60.8 60.8 87% 2e-11 29.11 1870 Q9WNW0.1 RecName: Full=Genome polyprotein; Contains: RecName:... Parsnip yell... NA 33762 60.8 60.8 84% 2e-11 32.24 3027 Q05057.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Mengo virus NA 12107 60.1 60.1 78% 4e-11 28.57 2293 P12296.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... cardiovirus A1 NA 2870365 59.3 59.3 78% 8e-11 28.57 2292 Q66765.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Theiler's en... NA 12125 59.3 59.3 77% 9e-11 30.77 2303 P08544.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Encephalomyo... NA 12104 59.3 59.3 78% 9e-11 28.57 2290 P03304.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Theiler's en... NA 12126 59.3 59.3 77% 9e-11 30.77 2301 P13899.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Saffold virus NA 434309 58.9 58.9 84% 1e-10 29.68 2295 C0MHL9.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Encephalomyo... NA 12105 58.9 58.9 78% 1e-10 28.57 2292 P17593.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Encephalomyo... NA 12106 58.9 58.9 78% 1e-10 28.57 2292 P17594.2 RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains:... Tomato rings... NA 12281 58.5 58.5 83% 2e-10 30.46 2197 P29150.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Theiler's mu... NA 12127 57.8 57.8 77% 3e-10 30.77 2303 P08545.2 RecName: Full=RNA1 polyprotein; AltName: Full=Genome polyprote... Red clover m... NA 12262 56.2 56.2 84% 9e-10 29.41 1864 P35930.1 RecName: Full=RNA1 polyprotein; AltName: Full=B RNA polyprotei... Cowpea mosai... NA 928299 56.2 56.2 92% 9e-10 28.14 1866 P03600.1 RecName: Full=RNA1 polyprotein; AltName: Full=Genome polyprote... Cherry rasp ... NA 650137 55.8 55.8 83% 1e-09 31.58 2250 Q6EWG9.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Cosavirus A ... NA 1554483 55.8 55.8 78% 1e-09 30.50 2124 B8XTP8.1 RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains:... Arabis mosai... NA 282063 55.1 55.1 93% 2e-09 27.65 2284 Q6W8W5.1 RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains:... Blackcurrant... NA 65743 55.1 55.1 92% 2e-09 27.11 2094 Q8V5E0.1 RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains:... Grapevine fa... NA 12274 54.7 54.7 83% 3e-09 28.10 2284 P29149.1 RecName: Full=Genome polyprotein; Contains: RecName:... Rice tungro ... NA 337081 53.9 53.9 87% 5e-09 26.75 3473 Q83034.1 RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains:... Tobacco ring... NA 12282 53.9 53.9 91% 6e-09 26.06 2304 Q88893.1 RecName: Full=Genome polyprotein; Contains: RecName:... Rice tungro ... NA 337080 53.1 53.1 87% 1e-08 26.75 3471 Q91PP5.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Salivirus NG-J1 NA 651733 52.8 52.8 93% 1e-08 26.95 2374 C5MSH2.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Human klasse... NA 655603 52.4 52.4 93% 2e-08 26.95 2370 C6KEF6.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=NS1-... Lordsdale virus NA 82658 52.0 52.0 78% 3e-08 29.08 1699 P54634.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Enterovirus A71 NA 39054 52.0 52.0 87% 3e-08 25.47 2193 B9VUU3.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Human entero... NA 69153 51.6 51.6 87% 3e-08 25.47 2193 Q66478.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Coxsackievir... NA 231417 51.6 51.6 87% 4e-08 25.47 2193 Q9QF31.3 RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains:... Grapevine ch... NA 12273 51.6 51.6 94% 4e-08 28.90 2252 P13025.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Human coxsac... NA 69159 51.6 51.6 87% 4e-08 25.47 2193 Q65900.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... enterovirus D68 NA 42789 51.2 51.2 92% 4e-08 24.24 2188 Q68T42.1 RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains:... Tomato black... NA 283677 50.4 50.4 94% 8e-08 30.06 2266 Q8B8X3.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Bovine enter... NA 12065 50.4 50.4 93% 8e-08 26.19 2175 P12915.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=NS1;... Canine calic... NA 292348 50.4 50.4 77% 8e-08 31.21 1929 Q8V736.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Human entero... NA 103922 50.4 50.4 86% 9e-08 25.79 2193 Q66479.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=NS1-... Murine norov... NA 223997 49.7 49.7 79% 2e-07 31.94 1687 Q80J95.3 RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains:... Satsuma dwar... NA 650481 49.7 49.7 81% 2e-07 30.61 2081 Q9WAL8.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=NS1;... Sapovirus Mc10 NA 234601 49.7 49.7 79% 2e-07 31.25 2278 Q6XDK8.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... rhinovirus B3 NA 44130 48.9 48.9 88% 2e-07 24.54 2178 Q82081.4 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Human entero... NA 31915 48.9 48.9 87% 3e-07 24.20 2194 P32537.4 RecName: Full=Genome polyprotein; AltName: Full=p254; Contains... European bro... NA 316979 48.5 48.5 84% 3e-07 29.68 2334 Q96725.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Human rhinov... NA 650130 48.5 48.5 84% 4e-07 27.45 2164 P07210.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Human poliov... NA 12081 47.4 47.4 88% 1e-06 25.16 2209 P03300.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Human poliov... NA 12082 47.0 47.0 88% 1e-06 25.16 2209 P03301.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=NS1;... Manchester v... NA 82659 46.6 46.6 85% 2e-06 31.17 2280 Q69014.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... rhinovirus B14 NA 12131 46.6 46.6 82% 2e-06 25.00 2179 P03303.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Porcine ente... NA 64141 46.2 46.2 87% 2e-06 22.29 2168 O41174.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=NS1;... Sapovirus Hu... NA 291175 46.2 46.2 85% 2e-06 31.17 2280 Q672I1.1 RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains:... Beet ringspo... NA 191547 46.2 46.2 83% 3e-06 29.80 2264 P18522.1 RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains:... Cycas necrot... NA 173976 45.4 45.4 83% 4e-06 29.80 2336 Q8QVV0.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=NS1-... Norovirus Hu... NA 524364 45.1 45.1 68% 5e-06 27.87 1789 Q83883.1 RecName: Full=Genome polyprotein; AltName: Full=p254; Contains... Rabbit hemor... NA 314537 45.1 45.1 84% 5e-06 28.39 2344 Q89273.1 RecName: Full=Genome polyprotein; AltName: Full=p254; Contains... Rabbit hemor... NA 314536 45.1 45.1 84% 5e-06 28.39 2344 P27410.1 RecName: Full=Genome polyprotein; AltName: Full=p254; Contains... Rabbit hemor... NA 314538 45.1 45.1 84% 6e-06 28.39 2344 Q86119.2 RecName: Full=Genome polyprotein; AltName: Full=p254; Contains... Rabbit hemor... NA 314535 45.1 45.1 84% 6e-06 28.39 2344 Q86117.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=NS1-... Southampton ... NA 37129 44.3 44.3 68% 1e-05 27.87 1788 Q04544.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=NS1;... Feline calic... NA 292349 43.1 43.1 91% 2e-05 30.67 1763 Q66914.1 RecName: Full=Genome polyprotein; Contains: RecName:... Feline calic... NA 11978 43.1 43.1 91% 2e-05 30.67 1763 N0A3C0.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=NS1;... Feline calic... NA 11981 43.1 43.1 91% 2e-05 30.67 1763 P27409.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=NS1;... Feline calic... NA 11980 43.1 43.1 91% 3e-05 30.67 1763 P27408.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Echovirus 6 ... NA 103913 42.7 42.7 80% 4e-05 25.68 2191 Q66474.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... rhinovirus A2 NA 12130 42.7 42.7 86% 4e-05 25.97 2150 P04936.3 RecName: Full=Genome polyprotein; AltName: Full=p254; Contains... Rabbit hemor... NA 11977 42.7 42.7 92% 4e-05 27.81 2344 P27411.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=NS1;... Vesicular ex... NA 85617 42.0 42.0 89% 6e-05 29.19 1881 Q9DUN3.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... rhinovirus A16 NA 31708 41.6 41.6 86% 8e-05 25.32 2153 Q82122.4 RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains:... Raspberry ri... NA 281921 41.2 41.2 94% 1e-04 23.98 2367 Q6W8W4.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=NS1;... Feline calic... NA 11979 41.2 41.2 89% 1e-04 30.43 1762 P27407.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Human rhinov... NA 12134 40.0 40.0 72% 3e-04 26.32 2157 P23008.3 RecName: Full=Packaging protein 1; AltName: Full=Packaging... Fowl aviaden... NA 10553 39.7 39.7 56% 3e-04 30.77 439 Q64749.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... rhinovirus A1B NA 2777147 39.3 39.3 93% 4e-04 24.57 2157 P12916.3 RecName: Full=Replication-associated protein; AltName:... Canary circo... NA 142661 38.5 38.5 82% 6e-04 29.30 290 Q912W1.2 RecName: Full=Replication-associated protein; AltName:... Columbid cir... NA 126070 38.9 38.9 52% 6e-04 32.29 317 Q9IG45.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=NS1;... Porcine ente... NA 523795 37.7 37.7 78% 0.002 26.24 2254 Q9QEJ5.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=NS1;... San Miguel s... NA 36406 37.4 37.4 94% 0.002 28.40 1879 P36286.3 RecName: Full=Replication-associated protein; AltName:... Beak and fea... NA 77856 37.0 37.0 38% 0.002 35.21 289 Q9YUD3.1 RecName: Full=Replication-associated protein; AltName:... Goose circov... NA 146032 34.7 34.7 49% 0.011 30.00 293 Q91EK3.1 RecName: Full=Replication-associated protein; Short=Rep;... Cyclovirus P... NA 742918 33.5 33.5 76% 0.033 29.17 280 D4N3P2.1 RecName: Full=Replication-associated protein; Short=Rep;... Porcine circ... NA 133704 33.1 33.1 56% 0.039 29.63 312 Q805H4.1 RecName: Full=Replication polyprotein; Includes: RecName:... Drosophila m... NA 3071212 33.5 33.5 43% 0.046 28.75 2104 Q27YG9.2 Alignments: >RecName: Full=Replicase polyprotein [Acute bee paralysis virus strain Rothamsted] Sequence ID: Q9DSN9.1 Length: 1906 Range 1: 513 to 692 Score:381 bits(979), Expect:2e-123, Method:Compositional matrix adjust., Identities:180/180(100%), Positives:180/180(100%), Gaps:0/180(0%) Query 1 MRYLTEVFKSVDTSGAFGNKPRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEM 60 MRYLTEVFKSVDTSGAFGNKPRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEM Sbjct 513 MRYLTEVFKSVDTSGAFGNKPRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEM 572 Query 61 RNFSKNIYMRNVEQEFWDNYQGQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLH 120 RNFSKNIYMRNVEQEFWDNYQGQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLH Sbjct 573 RNFSKNIYMRNVEQEFWDNYQGQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLH 632 Query 121 MAHLEDKRKTKFTSKVIIMTSNVFEQDVNSLTFPDAFRRRVDLCAEVKNKDEFTKMCWSK 180 MAHLEDKRKTKFTSKVIIMTSNVFEQDVNSLTFPDAFRRRVDLCAEVKNKDEFTKMCWSK Sbjct 633 MAHLEDKRKTKFTSKVIIMTSNVFEQDVNSLTFPDAFRRRVDLCAEVKNKDEFTKMCWSK 692 >RecName: Full=Replicase polyprotein; Contains: RecName: Full=Protein 1A; AltName: Full=CrPV-1A; Contains: RecName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Contains: RecName: Full=Protein 2C; Contains: RecName: Full=Protein 3A; Contains: RecName: Full=Protein 3B; Contains: RecName: Full=3C-like protease; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL [Cricket paralysis virus Teleogryllus commodus/Australia/CrPVVIC/1968] Sequence ID: Q9IJX4.1 Length: 1771 Range 1: 485 to 636 Score:129 bits(325), Expect:2e-35, Method:Compositional matrix adjust., Identities:64/155(41%), Positives:92/155(59%), Gaps:3/155(1%) Query 7 VFKSVDTSGAFGNKPRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKN 66 +++ V S G P+ +PI +WL GESG GK+ M +PL ID+ + + + + Sbjct 485 LYEQVLLSPVKGGGPKMRPITVWLTGESGIGKTQMIYPLCIDILREM--GIVKPDAYKHQ 542 Query 67 IYMRNVEQEFWDNYQGQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLED 126 Y R VE E+WD Y GQ IV DD Q++D + PNPE E+IRT N P LHMA L+D Sbjct 543 AYARQVETEYWDGYNGQKIVIYDDAFQLKDDKTKPNPEIFEVIRTCNTFPQHLHMAALQD 602 Query 127 KRKTKFTSKVIIMTSNVFEQDVNSLTFPDAFRRRV 161 K ++V++ T+N F+ + S+TFPDAF R+ Sbjct 603 KNMYS-QAEVLLYTTNQFQVQLESITFPDAFYNRM 636 >RecName: Full=Replicase polyprotein; Contains: RecName: Full=Protein 1A; Contains: RecName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Contains: RecName: Full=Protein 2C; Contains: RecName: Full=Protein 3A; Contains: RecName: Full=Protein 3B; Contains: RecName: Full=3C-like protease; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL [Drosophila C virus strain EB] Sequence ID: O36966.1 Length: 1759 Range 1: 423 to 588 Score:129 bits(325), Expect:3e-35, Method:Compositional matrix adjust., Identities:68/169(40%), Positives:100/169(59%), Gaps:4/169(2%) Query 6 EVFKSVDTSGAFGNKPRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSK 65 ++++ V S G PR +PI +WL GESG GK+ M +PL ID+ + + + +F Sbjct 423 QLYEYVSCSPVKGGGPRMRPICLWLVGESGVGKTEMVYPLCIDVLREM--GMIKKDDFHH 480 Query 66 NIYMRNVEQEFWDNYQGQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLE 125 +Y R VE EFWD Y+GQ IV DD Q +D + NPE E+IR+ N P LHMA L Sbjct 481 QVYGRQVETEFWDGYKGQKIVIYDDAFQKKDDKTAANPEIFEVIRSCNTFPQHLHMAALH 540 Query 126 DKRKTKFTSKVIIMTSNVFEQDVNSLTFPDAFRRRV-DLCAEVKNKDEF 173 DK T +++++ T+N + + S+TFPDAF R+ D+ +V K E+ Sbjct 541 DK-NTFSAAELLLYTTNDYNVKLESITFPDAFFNRMGDMAYKVSPKKEY 588 >RecName: Full=RNA1 polyprotein; Contains: RecName: Full=Protease-cofactor; Contains: RecName: Full=Putative helicase; Contains: RecName: Full=Picornain 3C-like protease; Short=3C-like protease; Contains: RecName: Full=RNA-directed RNA polymerase [Tomato torrado virus ESP/PRIToTV0301] Sequence ID: A1XIP9.1 Length: 2158 Range 1: 383 to 527 Score:81.3 bits(199), Expect:2e-18, Method:Compositional matrix adjust., Identities:53/153(35%), Positives:78/153(50%), Gaps:9/153(5%) Query 22 RTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWDNYQ 81 R +P ++ +G SG GKS + L I N +LD ++E + +Y + +W NY Sbjct 383 RAEPFMVQWYGASGCGKS-TSMRLFI---NDVLDRMEEPK--LNRLYAVSKRDAYWSNYA 436 Query 82 GQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKVIIMTS 141 Q + DD G +RD + + +LI + P PL MA +EDK + FTS+ I TS Sbjct 437 HQTAILMDDMGALRDGAGQCQ-DIKDLIDIKSTQPAPLPMAAVEDKGR-HFTSRYIFATS 494 Query 142 NVFEQDVN-SLTFPDAFRRRVDLCAEVKNKDEF 173 N+ LT+PDAF RR D+ E + EF Sbjct 495 NLISAPAQCGLTYPDAFERRRDVLVECRKVGEF 527 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Protein 3B; Short=P3B; AltName: Full=VPg; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL [Avian encephalomyelitis virus strain Calnek] Sequence ID: Q9YLS4.1 Length: 2134 Range 1: 1143 to 1283 Score:79.7 bits(195), Expect:8e-18, Method:Compositional matrix adjust., Identities:49/154(32%), Positives:81/154(52%), Gaps:14/154(9%) Query 22 RTQPIVIWLFGESGRGKSGMTWPLAIDLNNSL-LDNVDEMRNFSKNIYMRNVEQEFWDNY 80 R +P V++L+G G GKS + +A+ L L + +V+ IY + + +FWD Y Sbjct 1143 RAEPTVLYLYGNRGGGKSLASMAIAVKLCKELGISHVE-------GIYTKPIMSDFWDGY 1195 Query 81 QGQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKVIIMT 140 GQ +V DD GQ S + ++ + + P L+MA+LE K+ T+F S II + Sbjct 1196 AGQPVVIMDDLGQ-----STSDEDWTNFCQLVSSCPLRLNMANLE-KKGTQFNSPFIIAS 1249 Query 141 SNVFEQDVNSLTFPDAFRRRVDLCAEVKNKDEFT 174 SN+ ++ DA RR+ + +V K+EF+ Sbjct 1250 SNLSHPCPKTVYCTDAIARRLHIKVKVSPKEEFS 1283 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Protein 3B; Short=P3B; AltName: Full=VPg; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL [Avian encephalomyelitis virus strain L2Z] Sequence ID: Q6WQ42.1 Length: 2134 Range 1: 1143 to 1283 Score:79.3 bits(194), Expect:9e-18, Method:Compositional matrix adjust., Identities:49/154(32%), Positives:81/154(52%), Gaps:14/154(9%) Query 22 RTQPIVIWLFGESGRGKSGMTWPLAIDLNNSL-LDNVDEMRNFSKNIYMRNVEQEFWDNY 80 R +P V++L+G G GKS + +A+ L L + +V+ IY + + +FWD Y Sbjct 1143 RAEPTVLYLYGNRGGGKSLASMAIAVKLCKELGISHVE-------GIYTKPIMSDFWDGY 1195 Query 81 QGQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKVIIMT 140 GQ +V DD GQ S + ++ + + P L+MA+LE K+ T+F S II + Sbjct 1196 AGQPVVIMDDLGQ-----STSDEDWTNFCQLVSSCPLRLNMANLE-KKGTQFNSPFIIAS 1249 Query 141 SNVFEQDVNSLTFPDAFRRRVDLCAEVKNKDEFT 174 SN+ ++ DA RR+ + +V K+EF+ Sbjct 1250 SNLSHPCPKTVYCTDAIARRLHIKVKVSPKEEFS 1283 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Protein 3B; Short=P3B; AltName: Full=VPg; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL [Avian encephalomyelitis virus strain Van Reokel] Sequence ID: Q6R325.1 Length: 2134 Range 1: 1143 to 1283 Score:79.3 bits(194), Expect:9e-18, Method:Compositional matrix adjust., Identities:49/154(32%), Positives:81/154(52%), Gaps:14/154(9%) Query 22 RTQPIVIWLFGESGRGKSGMTWPLAIDLNNSL-LDNVDEMRNFSKNIYMRNVEQEFWDNY 80 R +P V++L+G G GKS + +A+ L L + +V+ IY + + +FWD Y Sbjct 1143 RAEPTVLYLYGNRGGGKSLASMAIAVKLCKELGISHVE-------GIYTKPIMSDFWDGY 1195 Query 81 QGQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKVIIMT 140 GQ +V DD GQ S + ++ + + P L+MA+LE K+ T+F S II + Sbjct 1196 AGQPVVIMDDLGQ-----STSDEDWTNFCQLVSSCPLRLNMANLE-KKGTQFNSPFIIAS 1249 Query 141 SNVFEQDVNSLTFPDAFRRRVDLCAEVKNKDEFT 174 SN+ ++ DA RR+ + +V K+EF+ Sbjct 1250 SNLSHPCPKTVYCTDAIARRLHIKVKVSPKEEFS 1283 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protein; Short=L; Contains: RecName: Full=Capsid protein VP0; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=VPg; Short=P3B; AltName: Full=Protein 3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Aichi virus A846/88] Sequence ID: O91464.2 Length: 2432 Range 1: 1437 to 1567 Score:73.6 bits(179), Expect:1e-15, Method:Composition-based stats., Identities:52/146(36%), Positives:77/146(52%), Gaps:18/146(12%) Query 21 PRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWDNY 80 PR +P+V++L+G G GKS + LA L+ L D++ + S + E++D Y Sbjct 1437 PRPEPVVVYLYGPPGTGKSLLASLLAQTLSQRLAGTPDDVYSPS------SASCEYFDGY 1490 Query 81 QGQNIVCXDDFGQ---MRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKVI 137 GQ + DD GQ RD ++ PN + AP+ + MA LE+K T +TSKVI Sbjct 1491 TGQTVHFIDDIGQDPEGRDWANFPN--------LVSSAPFIVPMASLEEK-GTHYTSKVI 1541 Query 138 IMTSNVFEQDVNSLTFPDAFRRRVDL 163 ++TSN E + + A RRRV L Sbjct 1542 VVTSNFHEPNERAARSMGALRRRVHL 1567 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Protein VP1-2A; AltName: Full=VPX; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Assembly signal 2A; AltName: Full=pX; Contains: RecName: Full=Protein 2BC; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3ABCD; Short=P3; Contains: RecName: Full=Protein 3ABC; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL [Human hepatitis A virus Hu/Norway/NOR-21/1998] Sequence ID: Q9DWR1.4 Length: 2228 Range 1: 1219 to 1359 Score:71.2 bits(173), Expect:6e-15, Method:Compositional matrix adjust., Identities:50/153(33%), Positives:76/153(49%), Gaps:12/153(7%) Query 21 PRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWDNY 80 PR +P+V +L+G+ G GKS + LA + V+ KNIY + V ++WD Y Sbjct 1219 PRCEPVVCYLYGKRGGGKSLTSIALATKICKHY--GVEP----EKNIYTKPVASDYWDGY 1272 Query 81 QGQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKVIIMT 140 GQ + DD GQ +++ +F +L+ P L+MA LE+K + F+S II T Sbjct 1273 SGQLVCIIDDIGQ--NTTDEDWSDFCQLVSG---CPMRLNMASLEEKGR-HFSSPFIIAT 1326 Query 141 SNVFEQDVNSLTFPDAFRRRVDLCAEVKNKDEF 173 SN ++ +A RR+ EVK F Sbjct 1327 SNWSNPSPKTVYVKEAIDRRLHFKVEVKPASFF 1359 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protease; Short=Lpro; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; AltName: Full=P52; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Protein 3B-1; Short=P3B-1; AltName: Full=Genome-linked protein VPg1; Contains: RecName: Full=Protein 3B-2; Short=P3B-2; AltName: Full=Genome-linked protein VPg2; Contains: RecName: Full=Protein 3B-3; Short=P3B-3; AltName: Full=Genome-linked protein VPg3; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; AltName: Full=Protease P20B; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL; AltName: Full=P56A [Foot-and-mouth disease virus (strain A5)] Sequence ID: P03307.2 Length: 2332 Range 1: 1204 to 1346 Score:70.1 bits(170), Expect:1e-14, Method:Compositional matrix adjust., Identities:51/160(32%), Positives:79/160(49%), Gaps:22/160(13%) Query 19 NKPRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWD 78 +KPR +P+V+ L G+SG+GKS + LA ++ D +++ + + +D Sbjct 1204 SKPRPEPVVVCLRGKSGQGKSFLANVLAQAISTHFTGRTD-------SVWYCPPDPDHFD 1256 Query 79 NYQGQNIVCXDDFGQMRDSSSNPNPE----FMELIRTANIAPYPLHMAHLEDKRKTKFTS 134 Y Q +V DD GQ NP+ + F +++ T P MA LEDK K F S Sbjct 1257 GYNQQTVVVMDDLGQ------NPDGKDFKYFAQMVSTTGFIP---PMASLEDKGK-PFNS 1306 Query 135 KVIIMTSNVFEQ-DVNSLTFPDAFRRRVDLCAEVKNKDEF 173 KVII T+N++ ++ PDA RR +V KD + Sbjct 1307 KVIIATTNLYSGFTPRTMVCPDALNRRFHFDIDVSAKDGY 1346 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=P1AB; AltName: Full=Virion protein 0; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A H-NC; Short=P2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL [HPeV 5 strain CT86-6760] Sequence ID: Q9YID8.1 Length: 2188 Range 1: 1183 to 1321 Score:69.3 bits(168), Expect:2e-14, Method:Compositional matrix adjust., Identities:49/156(31%), Positives:73/156(46%), Gaps:19/156(12%) Query 22 RTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWDNYQ 81 R +PI +W+ GE G+GKS +T L+ L S N +Y EF D Y Sbjct 1183 RVEPIGVWIQGEPGQGKSFLTHTLSRQLQKSCKLN---------GVYTNPTASEFMDGYD 1233 Query 82 GQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKVIIMTS 141 Q+I DD GQ R + L + P+ + MAHLE+K K +TSK++I T+ Sbjct 1234 NQDIHLIDDLGQTRKEK-----DIEMLCNCISSVPFIVPMAHLEEKGKF-YTSKLVIATT 1287 Query 142 NVFEQDVNSLTFPD--AFRRRVDLCAEVKNKDEFTK 175 N + D +S D A +RR ++ ++K Sbjct 1288 N--KSDFSSTVLQDSGALKRRFPYIMHIRAAKAYSK 1321 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protease; Short=Lpro; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; AltName: Full=P52; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Protein 3B-1; Short=P3B-1; AltName: Full=Genome-linked protein VPg1; Contains: RecName: Full=Protein 3B-2; Short=P3B-2; AltName: Full=Genome-linked protein VPg2; Contains: RecName: Full=Protein 3B-3; Short=P3B-3; AltName: Full=Genome-linked protein VPg3; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; AltName: Full=Protease P20B; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL; AltName: Full=P56A [Foot-and-mouth disease virus C1] Sequence ID: P15072.2 Length: 2327 Range 1: 1199 to 1341 Score:69.3 bits(168), Expect:3e-14, Method:Compositional matrix adjust., Identities:51/160(32%), Positives:80/160(50%), Gaps:22/160(13%) Query 19 NKPRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWD 78 +K R +P+V+ L G+SG+GKS + LA ++ L D +++ + + +D Sbjct 1199 SKSRPEPVVVCLRGKSGQGKSFLANVLAQAISTHLTGRTD-------SVWYCPPDPDHFD 1251 Query 79 NYQGQNIVCXDDFGQMRDSSSNPNPE----FMELIRTANIAPYPLHMAHLEDKRKTKFTS 134 Y Q +V DD GQ NP+ + F +++ T P MA LEDK K F+S Sbjct 1252 GYNQQTVVVMDDLGQ------NPDGKDFKYFAQMVSTTGFIP---PMASLEDKGK-PFSS 1301 Query 135 KVIIMTSNVFEQ-DVNSLTFPDAFRRRVDLCAEVKNKDEF 173 KVII T+N++ ++ PDA RR +V KD + Sbjct 1302 KVIIATTNLYSGFTPKTMVCPDALNRRFHFDIDVSAKDGY 1341 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protease; Short=Lpro; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; AltName: Full=P52; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Protein 3B-1; Short=P3B-1; AltName: Full=Genome-linked protein VPg1; Contains: RecName: Full=Protein 3B-2; Short=P3B-2; AltName: Full=Genome-linked protein VPg2; Contains: RecName: Full=Protein 3B-3; Short=P3B-3; AltName: Full=Genome-linked protein VPg3; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; AltName: Full=Protease P20B; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL; AltName: Full=P56A [Foot-and-mouth disease virus (strain C1-Santa Pau)] Sequence ID: P03311.2 Length: 2327 Range 1: 1199 to 1341 Score:69.3 bits(168), Expect:3e-14, Method:Compositional matrix adjust., Identities:51/160(32%), Positives:80/160(50%), Gaps:22/160(13%) Query 19 NKPRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWD 78 +K R +P+V+ L G+SG+GKS + LA ++ L D +++ + + +D Sbjct 1199 SKSRPEPVVVCLRGKSGQGKSFLANVLAQAISTHLTGRTD-------SVWYCPPDPDHFD 1251 Query 79 NYQGQNIVCXDDFGQMRDSSSNPNPE----FMELIRTANIAPYPLHMAHLEDKRKTKFTS 134 Y Q +V DD GQ NP+ + F +++ T P MA LEDK K F+S Sbjct 1252 GYNQQTVVVMDDLGQ------NPDGKDFKYFAQMVSTTGFIP---PMASLEDKGK-PFSS 1301 Query 135 KVIIMTSNVFEQ-DVNSLTFPDAFRRRVDLCAEVKNKDEF 173 KVII T+N++ ++ PDA RR +V KD + Sbjct 1302 KVIIATTNLYSGFTPKTMVCPDALNRRFHFDIDVSAKDGY 1341 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Protein VP1-2A; AltName: Full=VPX; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Assembly signal 2A; AltName: Full=pX; Contains: RecName: Full=Protein 2BC; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3ABCD; Short=P3; Contains: RecName: Full=Protein 3ABC; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL [Human hepatitis A virus Hu/China/H2/1982] Sequence ID: A3FMB2.1 Length: 2227 Range 1: 1220 to 1359 Score:68.6 bits(166), Expect:5e-14, Method:Compositional matrix adjust., Identities:49/152(32%), Positives:75/152(49%), Gaps:12/152(7%) Query 22 RTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWDNYQ 81 R +P+V +L+G+ G GKS + LA + V+ KNIY + V ++WD Y Sbjct 1220 RCEPVVCYLYGKRGGGKSLTSIALATKICKHY--GVEP----EKNIYTKPVASDYWDGYS 1273 Query 82 GQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKVIIMTS 141 GQ + DD GQ +++ +F +L+ P L+MA LE+K + F+S II TS Sbjct 1274 GQLVCIIDDIGQ--NTTDEDWSDFCQLVSG---CPMRLNMASLEEKGR-HFSSPFIIATS 1327 Query 142 NVFEQDVNSLTFPDAFRRRVDLCAEVKNKDEF 173 N ++ +A RR+ EVK F Sbjct 1328 NWSNPSPKTVYVKEAIDRRLHFKVEVKPASFF 1359 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Protein VP1-2A; AltName: Full=VP1-pX; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Assembly signal 2A; AltName: Full=pX; Contains: RecName: Full=Protein 2BC; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3ABCD; Short=P3; Contains: RecName: Full=Protein 3ABC; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL [Human hepatitis A virus Hu/Australia/HM175/1976] Sequence ID: P08617.1 Length: 2227 Range 1: 1220 to 1359 Score:68.6 bits(166), Expect:5e-14, Method:Compositional matrix adjust., Identities:49/152(32%), Positives:75/152(49%), Gaps:12/152(7%) Query 22 RTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWDNYQ 81 R +P+V +L+G+ G GKS + LA + V+ KNIY + V ++WD Y Sbjct 1220 RCEPVVCYLYGKRGGGKSLTSIALATKICKHY--GVEP----EKNIYTKPVASDYWDGYS 1273 Query 82 GQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKVIIMTS 141 GQ + DD GQ +++ +F +L+ P L+MA LE+K + F+S II TS Sbjct 1274 GQLVCIIDDIGQ--NTTDEDWSDFCQLVSG---CPMRLNMASLEEKGR-HFSSPFIIATS 1327 Query 142 NVFEQDVNSLTFPDAFRRRVDLCAEVKNKDEF 173 N ++ +A RR+ EVK F Sbjct 1328 NWSNPSPKTVYVKEAIDRRLHFKVEVKPASFF 1359 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Protein VP1-2A; AltName: Full=VPX; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Assembly signal 2A; AltName: Full=pX; Contains: RecName: Full=Protein 2BC; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3ABCD; Short=P3; Contains: RecName: Full=Protein 3ABC; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL [Human hepatitis A virus Hu/Los Angelos/LA/1975] Sequence ID: P06441.1 Length: 2227 Range 1: 1220 to 1359 Score:68.6 bits(166), Expect:5e-14, Method:Compositional matrix adjust., Identities:49/152(32%), Positives:75/152(49%), Gaps:12/152(7%) Query 22 RTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWDNYQ 81 R +P+V +L+G+ G GKS + LA + V+ KNIY + V ++WD Y Sbjct 1220 RCEPVVCYLYGKRGGGKSLTSIALATKICKHY--GVEP----EKNIYTKPVASDYWDGYS 1273 Query 82 GQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKVIIMTS 141 GQ + DD GQ +++ +F +L+ P L+MA LE+K + F+S II TS Sbjct 1274 GQLVCIIDDIGQ--NTTDEDWSDFCQLVSG---CPMRLNMASLEEKGR-HFSSPFIIATS 1327 Query 142 NVFEQDVNSLTFPDAFRRRVDLCAEVKNKDEF 173 N ++ +A RR+ EVK F Sbjct 1328 NWSNPSPKTVYVKEAIDRRLHFKVEVKPASFF 1359 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Protein VP1-2A; AltName: Full=VPX; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Assembly signal 2A; AltName: Full=pX; Contains: RecName: Full=Protein 2BC; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3ABCD; Short=P3; Contains: RecName: Full=Protein 3ABC; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL [Human hepatitis A virus Hu/Japan/HAJ85-1/1985] Sequence ID: A5LGW7.1 Length: 2228 Range 1: 1220 to 1359 Score:68.2 bits(165), Expect:6e-14, Method:Compositional matrix adjust., Identities:49/152(32%), Positives:75/152(49%), Gaps:12/152(7%) Query 22 RTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWDNYQ 81 R +P+V +L+G+ G GKS + LA + V+ KNIY + V ++WD Y Sbjct 1220 RCEPVVCYLYGKRGGGKSLTSIALATKICKHY--GVEP----EKNIYTKPVASDYWDGYS 1273 Query 82 GQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKVIIMTS 141 GQ + DD GQ +++ +F +L+ P L+MA LE+K + F+S II TS Sbjct 1274 GQLVCIIDDIGQ--NTTDEDWSDFCQLVSG---CPMRLNMASLEEKGR-HFSSPFIIATS 1327 Query 142 NVFEQDVNSLTFPDAFRRRVDLCAEVKNKDEF 173 N ++ +A RR+ EVK F Sbjct 1328 NWSNPSPKTVYVKEAIDRRLHFKVEVKPASFF 1359 >RecName: Full=RNA1 polyprotein; AltName: Full=Genome polyprotein B; Contains: RecName: Full=Protease cofactor; Contains: RecName: Full=Putative helicase; AltName: Full=Membrane-binding protein; AltName: Full=NTP-binding protein; Short=NTB; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Picornain 3C-like protease; Short=3C-like protease; Contains: RecName: Full=RNA-directed RNA polymerase [Broad bean wilt virus 1 ATCC PV132] Sequence ID: Q76L40.1 Length: 1842 Range 1: 461 to 618 Score:68.2 bits(165), Expect:8e-14, Method:Compositional matrix adjust., Identities:52/172(30%), Positives:84/172(48%), Gaps:15/172(8%) Query 4 LTEVFKSVDTSGAFGNKPRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNF 63 LTE+ SV SGA N R P +++ G+SG GK+ + +A + + + + Sbjct 461 LTELHNSVIMSGA--NSTRKTPFMLFFTGKSGVGKTSVVQRMAANW-------LQQEQLG 511 Query 64 SKNIYMRNVEQEFWDNYQGQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAH 123 S +Y RN FW Y+ Q +V DDFG + S SN E+I + P+ + MA Sbjct 512 SNEVYSRNGLDPFWSGYKRQAVVTYDDFGAVPGSVSNE----AEIINVVSSNPHSVMMAD 567 Query 124 LEDKRKTKFTSKVIIMTSNVFEQDVNSLTF-PDAFRRRVDLCAEVKNKDEFT 174 L++K F S++II +SN + S +A+ RR + +V K++ Sbjct 568 LKEK-GMYFDSRLIIASSNFLAANPESGVHDSEAYERRRHVVVQVSLKEDMA 618 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Protein VP1-2A; AltName: Full=VPX; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Assembly signal 2A; AltName: Full=pX; Contains: RecName: Full=Protein 2BC; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3ABCD; Short=P3; Contains: RecName: Full=Protein 3ABC; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL [Human hepatitis A virus Hu/France/CF-53/1979] Sequence ID: Q5Y944.1 Length: 2225 Range 1: 1220 to 1359 Score:67.8 bits(164), Expect:8e-14, Method:Compositional matrix adjust., Identities:49/152(32%), Positives:75/152(49%), Gaps:12/152(7%) Query 22 RTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWDNYQ 81 R +P+V +L+G+ G GKS + LA + V+ KNIY + V ++WD Y Sbjct 1220 RCEPVVCYLYGKRGGGKSLTSIALATKICKHY--GVEP----EKNIYTKPVASDYWDGYS 1273 Query 82 GQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKVIIMTS 141 GQ + DD GQ +++ +F +L+ P L+MA LE+K + F+S II TS Sbjct 1274 GQLVCIIDDIGQ--NTTDEDWSDFCQLVSG---CPMRLNMASLEEKGR-HFSSPFIIATS 1327 Query 142 NVFEQDVNSLTFPDAFRRRVDLCAEVKNKDEF 173 N ++ +A RR+ EVK F Sbjct 1328 NWSNPSPKTVYVKEAIDRRLHFKIEVKPASFF 1359 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protease; Short=Lpro; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; AltName: Full=P52; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Protein 3B-1; Short=P3B-1; AltName: Full=Genome-linked protein VPg1; Contains: RecName: Full=Protein 3B-2; Short=P3B-2; AltName: Full=Genome-linked protein VPg2; Contains: RecName: Full=Protein 3B-3; Short=P3B-3; AltName: Full=Genome-linked protein VPg3; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; AltName: Full=Protease P20B; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL; AltName: Full=P56A [Foot-and-mouth disease virus (strain A10-61)] Sequence ID: P03306.2 Length: 2332 Range 1: 1204 to 1346 Score:67.8 bits(164), Expect:8e-14, Method:Compositional matrix adjust., Identities:50/160(31%), Positives:79/160(49%), Gaps:22/160(13%) Query 19 NKPRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWD 78 +K R +P+V+ L G+SG+GKS + LA ++ +D +++ + + +D Sbjct 1204 SKSRPEPVVVCLRGKSGQGKSFLANVLAQAISTHFTGRID-------SVWYCPPDPDHFD 1256 Query 79 NYQGQNIVCXDDFGQMRDSSSNPNPE----FMELIRTANIAPYPLHMAHLEDKRKTKFTS 134 Y Q +V DD GQ NP+ + F +++ T P MA LEDK K F S Sbjct 1257 GYNQQTVVVMDDLGQ------NPDGKDFKYFAQMVSTTGFIP---PMASLEDKGK-PFNS 1306 Query 135 KVIIMTSNVFEQ-DVNSLTFPDAFRRRVDLCAEVKNKDEF 173 KVII T+N++ ++ PDA RR +V KD + Sbjct 1307 KVIIATTNLYSGFTPRTMVCPDALNRRFHFDIDVSAKDGY 1346 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protease; Short=Lpro; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; AltName: Full=P52; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Protein 3B-1; Short=P3B-1; AltName: Full=Genome-linked protein VPg1; Contains: RecName: Full=Protein 3B-2; Short=P3B-2; AltName: Full=Genome-linked protein VPg2; Contains: RecName: Full=Protein 3B-3; Short=P3B-3; AltName: Full=Genome-linked protein VPg3; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; AltName: Full=Protease P20B; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL; AltName: Full=P56A [Foot-and-mouth disease virus O] Sequence ID: P03305.1 Length: 2332 Range 1: 1204 to 1346 Score:67.8 bits(164), Expect:9e-14, Method:Compositional matrix adjust., Identities:50/160(31%), Positives:79/160(49%), Gaps:22/160(13%) Query 19 NKPRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWD 78 +K R +P+V+ L G+SG+GKS + LA ++ +D +++ + + +D Sbjct 1204 SKSRPEPVVVCLRGKSGQGKSFLANVLAQAISTHFTGRID-------SVWYCPPDPDHFD 1256 Query 79 NYQGQNIVCXDDFGQMRDSSSNPNPE----FMELIRTANIAPYPLHMAHLEDKRKTKFTS 134 Y Q +V DD GQ NP+ + F +++ T P MA LEDK K F S Sbjct 1257 GYNQQTVVVMDDLGQ------NPDGKDFKYFAQMVSTTGFIP---PMASLEDKGK-PFNS 1306 Query 135 KVIIMTSNVFEQ-DVNSLTFPDAFRRRVDLCAEVKNKDEF 173 KVII T+N++ ++ PDA RR +V KD + Sbjct 1307 KVIIATTNLYSGFTPRTMVCPDALNRRFHFDIDVSAKDGY 1346 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Protein VP1-2A; AltName: Full=VPX; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Assembly signal 2A; AltName: Full=pX; Contains: RecName: Full=Protein 2BC; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3ABCD; Short=P3; Contains: RecName: Full=Protein 3ABC; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL [Human hepatitis A virus Hu/Northern Africa/MBB/1978] Sequence ID: P13901.1 Length: 2227 Range 1: 1220 to 1360 Score:67.8 bits(164), Expect:9e-14, Method:Compositional matrix adjust., Identities:50/154(32%), Positives:77/154(50%), Gaps:13/154(8%) Query 22 RTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWDNYQ 81 R +P+V +L+G+ G GKS + LA + V+ KNIY + V ++WD Y Sbjct 1220 RCEPVVCYLYGKRGGGKSLTSIALATKICKHY--GVEP----EKNIYTKPVASDYWDGYS 1273 Query 82 GQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKVIIMTS 141 GQ + DD GQ +++ +F +L+ P L+MA LE+K + F+S II TS Sbjct 1274 GQLVCIIDDIGQ--NTTDEDWSDFCQLVSG---CPLRLNMASLEEKGR-HFSSPFIIATS 1327 Query 142 NVFEQDVNSLTFPDAFRRRVDLCAEVKNKDEFTK 175 N ++ +A RR+ EV N F+K Sbjct 1328 NWSNPSPKTVYVKEAIDRRLHFKVEV-NPASFSK 1360 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Protein VP1-2A; AltName: Full=VPX; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Assembly signal 2A; AltName: Full=pX; Contains: RecName: Full=Protein 2BC; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3ABCD; Short=P3; Contains: RecName: Full=Protein 3ABC; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL [Human hepatitis A virus Hu/Sierra Leone/SLF88/1988] Sequence ID: Q8V0N6.1 Length: 2227 Range 1: 1220 to 1359 Score:67.8 bits(164), Expect:9e-14, Method:Compositional matrix adjust., Identities:49/152(32%), Positives:75/152(49%), Gaps:12/152(7%) Query 22 RTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWDNYQ 81 R +P+V +L+G+ G GKS + LA + V+ KNIY + V ++WD Y Sbjct 1220 RCEPVVCYLYGKRGGGKSLTSIALATKICKHY--GVEP----EKNIYTKPVASDYWDGYS 1273 Query 82 GQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKVIIMTS 141 GQ + DD GQ +++ +F +L+ P L+MA LE+K + F+S II TS Sbjct 1274 GQLVCIIDDIGQ--NTTDEDWSDFCQLVSG---CPMRLNMASLEEKGR-HFSSPFIIATS 1327 Query 142 NVFEQDVNSLTFPDAFRRRVDLCAEVKNKDEF 173 N ++ +A RR+ EVK F Sbjct 1328 NWSNPSPKTVYVKEAIDRRLHFKIEVKPASFF 1359 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protease; Short=Lpro; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; AltName: Full=P52; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Protein 3B-1; Short=P3B-1; AltName: Full=Genome-linked protein VPg1; Contains: RecName: Full=Protein 3B-2; Short=P3B-2; AltName: Full=Genome-linked protein VPg2; Contains: RecName: Full=Protein 3B-3; Short=P3B-3; AltName: Full=Genome-linked protein VPg3; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; AltName: Full=Protease P20B; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL; AltName: Full=P56A [Foot-and-mouth disease virus A22/550/Azerbaijan/65] Sequence ID: P49303.1 Length: 2336 Range 1: 1205 to 1347 Score:67.8 bits(164), Expect:9e-14, Method:Compositional matrix adjust., Identities:50/160(31%), Positives:79/160(49%), Gaps:22/160(13%) Query 19 NKPRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWD 78 +K R +P+V+ L G+SG+GKS + LA ++ +D +++ + + +D Sbjct 1205 SKSRPEPVVVCLRGKSGQGKSFLANVLAQAISTHFTGRID-------SVWYCPPDPDHFD 1257 Query 79 NYQGQNIVCXDDFGQMRDSSSNPNPE----FMELIRTANIAPYPLHMAHLEDKRKTKFTS 134 Y Q +V DD GQ NP+ + F +++ T P MA LEDK K F S Sbjct 1258 GYNQQTVVVMDDLGQ------NPDGKDFKYFAQMVSTTGFIP---PMASLEDKGK-PFNS 1307 Query 135 KVIIMTSNVFEQ-DVNSLTFPDAFRRRVDLCAEVKNKDEF 173 KVII T+N++ ++ PDA RR +V KD + Sbjct 1308 KVIITTTNLYSGFTPRTMVCPDALNRRFHFDIDVSAKDGY 1347 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=P1AB; AltName: Full=Virion protein 0; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A H-NC; Short=P2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL [Echovirus 22 (strain Harris)] Sequence ID: Q66578.1 Length: 2180 Range 1: 1175 to 1313 Score:67.4 bits(163), Expect:1e-13, Method:Compositional matrix adjust., Identities:48/156(31%), Positives:73/156(46%), Gaps:19/156(12%) Query 22 RTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWDNYQ 81 R +PI IW+ GE G+GKS +T L+ L S N ++ EF D Y Sbjct 1175 RIEPIGIWIQGEPGQGKSFLTHTLSRQLQKSCKLN---------GVFTNPTASEFMDGYD 1225 Query 82 GQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKVIIMTS 141 Q+I DD GQ R + L + P+ + MAHLE+K K +TSK+++ T+ Sbjct 1226 NQDIHLIDDLGQTRKEK-----DIEMLCNCISSVPFIVPMAHLEEKGKF-YTSKLVVATT 1279 Query 142 NVFEQDVNSLTFPD--AFRRRVDLCAEVKNKDEFTK 175 N + D +S D A +RR ++ ++K Sbjct 1280 N--KSDFSSTVLQDSGALKRRFPYIMHIRAAKAYSK 1313 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Protein VP1-2A; AltName: Full=VPX; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Assembly signal 2A; AltName: Full=pX; Contains: RecName: Full=Protein 2BC; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3ABCD; Short=P3; Contains: RecName: Full=Protein 3ABC; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL [Simian hepatitis A virus Cercopithecus/Kenya/AGM-27/1985] Sequence ID: P14553.2 Length: 2230 Range 1: 1224 to 1358 Score:67.4 bits(163), Expect:1e-13, Method:Compositional matrix adjust., Identities:48/147(33%), Positives:74/147(50%), Gaps:12/147(8%) Query 22 RTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWDNYQ 81 R +P+V +L+G+ G GKS + LA + V+ KNIY + V ++WD Y Sbjct 1224 RCEPVVCYLYGKRGGGKSLTSIALATKICKHY--GVEP----EKNIYTKPVASDYWDGYS 1277 Query 82 GQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKVIIMTS 141 GQ + DD GQ +++ +F +L+ P L+MA LE+K + F+S II TS Sbjct 1278 GQLVCIIDDIGQ--NTTDEDWSDFCQLVSG---CPMRLNMASLEEKGR-HFSSPFIIATS 1331 Query 142 NVFEQDVNSLTFPDAFRRRVDLCAEVK 168 N ++ +A RR+ EVK Sbjct 1332 NWSNPSPKTVYVKEAIDRRLHYKIEVK 1358 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Protein VP1-2A; AltName: Full=VPX; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Assembly signal 2A; AltName: Full=pX; Contains: RecName: Full=Protein 2BC; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3ABCD; Short=P3; Contains: RecName: Full=Protein 3ABC; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL [Human hepatitis A virus Hu/Germany/GBM/1976] Sequence ID: Q67825.1 Length: 2227 Range 1: 1220 to 1359 Score:67.4 bits(163), Expect:1e-13, Method:Compositional matrix adjust., Identities:49/152(32%), Positives:74/152(48%), Gaps:12/152(7%) Query 22 RTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWDNYQ 81 R +P+V +L G+ G GKS + LA + V+ KNIY + V ++WD Y Sbjct 1220 RCEPVVCYLIGKRGGGKSLTSIALATKICKHY--GVEP----EKNIYTKPVASDYWDGYS 1273 Query 82 GQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKVIIMTS 141 GQ + DD GQ +++ +F +L+ P L+MA LE+K + F+S II TS Sbjct 1274 GQLVCIIDDIGQ--NTTDEDWSDFCQLVSG---CPMRLNMASLEEKGR-HFSSPFIIATS 1327 Query 142 NVFEQDVNSLTFPDAFRRRVDLCAEVKNKDEF 173 N ++ +A RR+ EVK F Sbjct 1328 NWSNPSPKTVYVKEAIDRRLHFKVEVKPASFF 1359 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protease; Short=Lpro; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; AltName: Full=P52; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Protein 3B-1; Short=P3B-1; AltName: Full=Genome-linked protein VPg1; Contains: RecName: Full=Protein 3B-2; Short=P3B-2; AltName: Full=Genome-linked protein VPg2; Contains: RecName: Full=Protein 3B-3; Short=P3B-3; AltName: Full=Genome-linked protein VPg3; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; AltName: Full=Protease P20B; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL; AltName: Full=P56A [Foot-and-mouth disease virus SAT 2] Sequence ID: Q9Q2N9.1 Length: 2335 Range 1: 1208 to 1350 Score:67.4 bits(163), Expect:1e-13, Method:Compositional matrix adjust., Identities:51/160(32%), Positives:78/160(48%), Gaps:22/160(13%) Query 19 NKPRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWD 78 +K R +P+V+ L G+SG+GKS + LA ++ D +++ + + +D Sbjct 1208 SKSRPEPVVVCLRGKSGQGKSFLANVLAQAISTHFTGRTD-------SVWYCPPDPDHFD 1260 Query 79 NYQGQNIVCXDDFGQMRDSSSNPNPE----FMELIRTANIAPYPLHMAHLEDKRKTKFTS 134 Y Q +V DD GQ NP+ + F +++ T P MA LEDK K F S Sbjct 1261 GYNQQAVVVMDDLGQ------NPDGKDFKYFAQMVSTTGFIP---PMASLEDKGK-PFNS 1310 Query 135 KVIIMTSNVFEQ-DVNSLTFPDAFRRRVDLCAEVKNKDEF 173 KVII TSN++ ++ PDA RR +V KD + Sbjct 1311 KVIIATSNLYSGFTPRTMVCPDALNRRFHFDIDVSAKDGY 1350 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protease; Short=Lpro; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; AltName: Full=P52; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Protein 3B-1; Short=P3B-1; AltName: Full=Genome-linked protein VPg1; Contains: RecName: Full=Protein 3B-2; Short=P3B-2; AltName: Full=Genome-linked protein VPg2; Contains: RecName: Full=Protein 3B-3; Short=P3B-3; AltName: Full=Genome-linked protein VPg3; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; AltName: Full=Protease P20B; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL; AltName: Full=P56A [Foot-and-mouth disease virus Asia 1] Sequence ID: A2I7M2.1 Length: 2329 Range 1: 1201 to 1343 Score:67.0 bits(162), Expect:2e-13, Method:Compositional matrix adjust., Identities:50/160(31%), Positives:79/160(49%), Gaps:22/160(13%) Query 19 NKPRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWD 78 +K R +P+V+ L G+SG+GKS + LA ++ +D +++ + + +D Sbjct 1201 SKSRPEPVVVCLRGKSGQGKSFLADVLAQAISTHYTGRID-------SVWYCPPDLDHFD 1253 Query 79 NYQGQNIVCXDDFGQMRDSSSNPNPE----FMELIRTANIAPYPLHMAHLEDKRKTKFTS 134 Y Q +V DD GQ NP+ + F +++ T P MA LEDK K F S Sbjct 1254 GYNQQTVVVMDDLGQ------NPDGKDFKYFAQMVSTTGFIP---PMASLEDKGK-PFNS 1303 Query 135 KVIIMTSNVFEQ-DVNSLTFPDAFRRRVDLCAEVKNKDEF 173 KVII T+N++ ++ PDA RR +V KD + Sbjct 1304 KVIIATTNLYSGFTPRTMVCPDALNRRFHFDIDVSAKDGY 1343 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protease; Short=Lpro; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; AltName: Full=P52; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Protein 3B-1; Short=P3B-1; AltName: Full=Genome-linked protein VPg1; Contains: RecName: Full=Protein 3B-2; Short=P3B-2; AltName: Full=Genome-linked protein VPg2; Contains: RecName: Full=Protein 3B-3; Short=P3B-3; AltName: Full=Genome-linked protein VPg3; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; AltName: Full=Protease P20B; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL; AltName: Full=P56A [Foot-and-mouth disease virus (strain A12)] Sequence ID: P03308.2 Length: 2333 Range 1: 1205 to 1347 Score:66.6 bits(161), Expect:2e-13, Method:Compositional matrix adjust., Identities:50/160(31%), Positives:78/160(48%), Gaps:22/160(13%) Query 19 NKPRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWD 78 +K R +P+V+ L G+SG+GKS + LA ++ D +++ + + +D Sbjct 1205 SKSRPEPVVVCLRGKSGQGKSFLANVLAQAISTHFTGRTD-------SVWYCPPDPDHFD 1257 Query 79 NYQGQNIVCXDDFGQMRDSSSNPNPE----FMELIRTANIAPYPLHMAHLEDKRKTKFTS 134 Y Q +V DD GQ NP+ + F +++ T P MA LEDK K F S Sbjct 1258 GYNQQTVVVMDDLGQ------NPDGKDFKYFAQMVSTTGFIP---PMASLEDKGK-PFNS 1307 Query 135 KVIIMTSNVFEQ-DVNSLTFPDAFRRRVDLCAEVKNKDEF 173 KVII T+N++ ++ PDA RR +V KD + Sbjct 1308 KVIIATTNLYSGFTPRTMVCPDALNRRFHFDIDVSAKDGY 1347 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protease; Short=Lpro; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; AltName: Full=P52; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Protein 3B-1; Short=P3B-1; AltName: Full=Genome-linked protein VPg1; Contains: RecName: Full=Protein 3B-2; Short=P3B-2; AltName: Full=Genome-linked protein VPg2; Contains: RecName: Full=Protein 3B-3; Short=P3B-3; AltName: Full=Genome-linked protein VPg3; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; AltName: Full=Protease P20B; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL; AltName: Full=P56A [Foot-and-mouth disease virus (strain C3 Indaial)] Sequence ID: P03310.2 Length: 2328 Range 1: 1200 to 1342 Score:66.6 bits(161), Expect:2e-13, Method:Compositional matrix adjust., Identities:50/160(31%), Positives:78/160(48%), Gaps:22/160(13%) Query 19 NKPRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWD 78 +K R +P+V+ L G+SG+GKS + LA ++ D +++ + + +D Sbjct 1200 SKSRPEPVVVCLRGKSGQGKSFLANVLAQAISTHFTGRTD-------SVWYCPPDPDHFD 1252 Query 79 NYQGQNIVCXDDFGQMRDSSSNPNPE----FMELIRTANIAPYPLHMAHLEDKRKTKFTS 134 Y Q +V DD GQ NP+ + F +++ T P MA LEDK K F S Sbjct 1253 GYNQQTVVVMDDLGQ------NPDGKDFKYFAQMVSTTGFIP---PMASLEDKGK-PFNS 1302 Query 135 KVIIMTSNVFEQ-DVNSLTFPDAFRRRVDLCAEVKNKDEF 173 KVII T+N++ ++ PDA RR +V KD + Sbjct 1303 KVIIATTNLYSGFTPRTMVCPDALNRRFHFDIDVSAKDGY 1342 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protease; Short=Lpro; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; AltName: Full=P52; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Protein 3B-1; Short=P3B-1; AltName: Full=Genome-linked protein VPg1; Contains: RecName: Full=Protein 3B-2; Short=P3B-2; AltName: Full=Genome-linked protein VPg2; Contains: RecName: Full=Protein 3B-3; Short=P3B-3; AltName: Full=Genome-linked protein VPg3; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; AltName: Full=Protease P20B; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL; AltName: Full=P56A [Foot-and-mouth disease virus O/swine/1997] Sequence ID: Q6PMV1.1 Length: 2322 Range 1: 1204 to 1346 Score:66.6 bits(161), Expect:2e-13, Method:Compositional matrix adjust., Identities:50/160(31%), Positives:78/160(48%), Gaps:22/160(13%) Query 19 NKPRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWD 78 +K R +P+V+ L G+SG+GKS + LA ++ D +++ + + +D Sbjct 1204 SKSRPEPVVVCLRGKSGQGKSFLANVLAQAISTHFTGRTD-------SVWYCPPDPDHFD 1256 Query 79 NYQGQNIVCXDDFGQMRDSSSNPNPE----FMELIRTANIAPYPLHMAHLEDKRKTKFTS 134 Y Q +V DD GQ NP+ + F +++ T P MA LEDK K F S Sbjct 1257 GYNQQTVVVMDDLGQ------NPDGKDFKYFAQMVSTTGFIP---PMASLEDKGK-PFNS 1306 Query 135 KVIIMTSNVFEQ-DVNSLTFPDAFRRRVDLCAEVKNKDEF 173 KVII T+N++ ++ PDA RR +V KD + Sbjct 1307 KVIIATTNLYSGFTPKTMVCPDALNRRFHFDIDVSAKDGY 1346 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=P1AB; AltName: Full=Virion protein 0; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A H-NC; Short=P2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL [Echovirus 23 strain Williamson] Sequence ID: O73556.1 Length: 2179 Range 1: 1174 to 1312 Score:65.5 bits(158), Expect:5e-13, Method:Compositional matrix adjust., Identities:50/156(32%), Positives:72/156(46%), Gaps:19/156(12%) Query 22 RTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWDNYQ 81 R +PI IW+ GE G+GKS +T L+ L + + IY EF D Y Sbjct 1174 RVEPIGIWIQGEPGQGKSFLTHTLSKQLQKTC---------GLQGIYTNPTASEFMDGYD 1224 Query 82 GQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKVIIMTS 141 Q+I DD GQ R + L + P + MAHLE+K K +TSK++I T+ Sbjct 1225 NQDIHLIDDLGQTRKER-----DIEMLCNCISSDPDIVPMAHLEEKGKF-YTSKLVIATT 1278 Query 142 NVFEQDVNSLTFPD--AFRRRVDLCAEVKNKDEFTK 175 N + D +S D A RRR ++ ++K Sbjct 1279 N--KPDFSSTVLLDSGALRRRFPYIMHIRAAKHYSK 1312 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protease; Short=Lpro; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; AltName: Full=P52; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Protein 3B-1; Short=P3B-1; AltName: Full=Genome-linked protein VPg1; Contains: RecName: Full=Protein 3B-2; Short=P3B-2; AltName: Full=Genome-linked protein VPg2; Contains: RecName: Full=Protein 3B-3; Short=P3B-3; AltName: Full=Genome-linked protein VPg3; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; AltName: Full=Protease P20B; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL; AltName: Full=P56A [Foot-and-mouth disease virus (strain A24 Cruzeiro)] Sequence ID: P03309.2 Length: 2333 Range 1: 1205 to 1347 Score:65.5 bits(158), Expect:5e-13, Method:Compositional matrix adjust., Identities:49/160(31%), Positives:78/160(48%), Gaps:22/160(13%) Query 19 NKPRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWD 78 ++ R +P+V+ L G+SG+GKS + LA ++ D +++ + + +D Sbjct 1205 SRSRPEPVVVCLRGKSGQGKSFLANVLAQAISTHFTGRTD-------SVWYCPPDPDHFD 1257 Query 79 NYQGQNIVCXDDFGQMRDSSSNPNPE----FMELIRTANIAPYPLHMAHLEDKRKTKFTS 134 Y Q +V DD GQ NP+ + F +++ T P MA LEDK K F S Sbjct 1258 GYNQQTVVVMDDLGQ------NPDGKDFKYFAQMVSTTGFIP---PMASLEDKGK-PFNS 1307 Query 135 KVIIMTSNVFEQ-DVNSLTFPDAFRRRVDLCAEVKNKDEF 173 KVII T+N++ ++ PDA RR +V KD + Sbjct 1308 KVIIATTNLYSGFTPRTMVCPDALNRRFHFDIDVSAKDGY 1347 >RecName: Full=RNA1 polyprotein; AltName: Full=Genome polyprotein B; AltName: Full=P1; Contains: RecName: Full=Protease cofactor; AltName: Full=32 kDa protein; Contains: RecName: Full=Putative helicase; AltName: Full=58 kDa protein; AltName: Full=Membrane-binding protein; AltName: Full=NTP-binding protein; Short=NTB; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Picornain 3C-like protease; Short=3C-like protease; AltName: Full=24 kDa protein; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=87 kDa protein [Bean-pod mottle virus (strain Kentucky G7)] Sequence ID: Q9YJU5.1 Length: 1850 Range 1: 465 to 607 Score:65.5 bits(158), Expect:6e-13, Method:Compositional matrix adjust., Identities:52/155(34%), Positives:76/155(49%), Gaps:15/155(9%) Query 22 RTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWDNYQ 81 R P VI+ GES GKS + ++ + D D + +Y RN FW Y+ Sbjct 465 RKIPFVIFAHGESRVGKSLL-------VDRLITDFCDHLEIGEDAVYSRNPSDPFWSGYR 517 Query 82 GQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKVIIMTS 141 Q IV DDF + S P+ E +LI + APYP++MA LE+K F S++++ +S Sbjct 518 RQPIVTIDDFAAV---VSEPSAE-AQLIPLVSSAPYPINMAGLEEK-GMHFDSQIMMCSS 572 Query 142 NVFEQDVNSLTFPD-AF--RRRVDLCAEVKNKDEF 173 N E + D AF RR V + E+K E+ Sbjct 573 NFLEPSPEAKIRDDMAFRNRRHVLITVELKPGVEY 607 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=P1AB; AltName: Full=Virion protein 0; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A1; Short=P2A1; Contains: RecName: Full=Protein 2A H-NC; Short=P2A2; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL [parechovirus B1] Sequence ID: Q8JV21.1 Length: 2253 Range 1: 1223 to 1361 Score:64.7 bits(156), Expect:1e-12, Method:Compositional matrix adjust., Identities:49/154(32%), Positives:73/154(47%), Gaps:15/154(9%) Query 22 RTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWDNYQ 81 R +PI IW+ E G+GKS T L+ L S N++ IY EF D Y Sbjct 1223 RLEPIGIWVSSEPGQGKSFFTHMLSTCLLKSC--NLE-------GIYTNPTGSEFMDGYI 1273 Query 82 GQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKVIIMTS 141 GQ+I DD GQ R+ + L + + P+ + MA L +K T +TSK++I T+ Sbjct 1274 GQDIHIIDDAGQNREEK-----DLALLCQCISSVPFTVPMADLTEK-GTFYTSKIVIATT 1327 Query 142 NVFEQDVNSLTFPDAFRRRVDLCAEVKNKDEFTK 175 N F+ LT P A RR ++ +++ Sbjct 1328 NKFDFTSMVLTDPAALERRFPFHLRIRAVASYSR 1361 >RecName: Full=RNA1 polyprotein; AltName: Full=Genome polyprotein B; AltName: Full=P1; Contains: RecName: Full=Protease cofactor; AltName: Full=32 kDa protein; Contains: RecName: Full=Putative helicase; AltName: Full=58 kDa protein; AltName: Full=Membrane-binding protein; AltName: Full=NTP-binding protein; Short=NTB; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Picornain 3C-like protease; Short=3C-like protease; AltName: Full=24 kDa protein; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=87 kDa protein [Cowpea severe mosaic virus (strain DG)] Sequence ID: P36312.1 Length: 1858 Range 1: 472 to 599 Score:64.7 bits(156), Expect:1e-12, Method:Compositional matrix adjust., Identities:48/140(34%), Positives:71/140(50%), Gaps:13/140(9%) Query 22 RTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWDNYQ 81 R P V++ G S GK+ + +N + D E+ +Y RNV ++W Y+ Sbjct 472 RKIPFVVYAHGASRVGKT-------MVINRLIEDFRKELELGEDCVYPRNVVDDYWSGYK 524 Query 82 GQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKVIIMTS 141 Q IV DDFG + SS+P+ E +LI + APYPL+MA L +K F S +++ +S Sbjct 525 RQPIVVIDDFGAV---SSDPSAE-AQLIPLISSAPYPLNMADLSEK-GMHFDSAIVMCSS 579 Query 142 NVFEQDVNSLTFPD-AFRRR 160 N E S + AFR R Sbjct 580 NFIECSPESKVRDEMAFRNR 599 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Rho; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=Beta; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=Gamma; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=Alpha; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=VPg; AltName: Full=Protein 3B; Short=P3B; AltName: Full=Viral protein genome-linked; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; AltName: Full=p22; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Seneca Valley virus USA/SSV-001] Sequence ID: Q155Z9.1 Length: 2181 Range 1: 1187 to 1320 Score:62.0 bits(149), Expect:8e-12, Method:Compositional matrix adjust., Identities:47/149(32%), Positives:75/149(50%), Gaps:18/149(12%) Query 22 RTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNF-SKNIYMRNVEQEFWDNY 80 R +P+V+ L G+ G GKS L ++L+ R + S+++Y + +F+D Y Sbjct 1187 RVEPVVVVLRGKPGCGKS---------LASTLIAQAVSKRLYGSQSVYSLPPDPDFFDGY 1237 Query 81 QGQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKVIIMT 140 +GQ + DD GQ D F +++ TA P +MA L +K + FTS +II T Sbjct 1238 KGQFVTLMDDLGQNPDGQDFST--FCQMVSTAQFLP---NMADLAEKGR-PFTSNLIIAT 1291 Query 141 SNVFEQDVNSLTFPDAFRRRV--DLCAEV 167 +N+ ++ P A RR+ DL EV Sbjct 1292 TNLPHFSPVTIADPSAVSRRINYDLTLEV 1320 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [rhinovirus C15] Sequence ID: E5D8F2.1 Length: 2153 Range 1: 1184 to 1337 Score:61.2 bits(147), Expect:2e-11, Method:Compositional matrix adjust., Identities:47/173(27%), Positives:82/173(47%), Gaps:20/173(11%) Query 2 RYLTEVFKSVDTSGAFGNKPRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMR 61 + +T++ K + A+ R +P+ + L G G GKS +T +A L Sbjct 1184 KRVTKIQKDLKQLSAYLKNHRHEPVCLLLHGNPGCGKSLVTTIIARGLTQE--------- 1234 Query 62 NFSKNIYMRNVEQEFWDNYQGQNIVCXDDFGQMRDSSSNPNPEFMELIRTAN-IAPYPLH 120 +Y + +++D Y Q +V DD GQ D F +++ T + I P Sbjct 1235 ---AQVYSLPPDPKYFDGYDQQQVVILDDLGQNPDGKDLST--FCQMVSTTDFIVP---- 1285 Query 121 MAHLEDKRKTKFTSKVIIMTSNVFEQDVNSLTFPDAFRRRVDLCAEVKNKDEF 173 MA LEDK K+ FTS+ ++ ++N+ ++T P+A +RR L A++ +F Sbjct 1286 MASLEDKGKS-FTSQYVLASTNLDTLSPPTVTIPEAIKRRFFLDADLITTSKF 1337 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Putative leader protein; Short=L-protein; Contains: RecName: Full=Capsid protein VP2; Contains: RecName: Full=Putative capsid protein VP4; Contains: RecName: Full=Putative protein 2A-like 1; Contains: RecName: Full=Putative protein 2A-like 2; Contains: RecName: Full=Helicase; Contains: RecName: Full=3C-like protease; Short=3CL-PRO; Contains: RecName: Full=RNA-directed RNA polymerase [Ectropis obliqua picorna-like virus] Sequence ID: Q6UP17.1 Length: 2987 Range 1: 1522 to 1679 Score:61.2 bits(147), Expect:2e-11, Method:Compositional matrix adjust., Identities:44/166(27%), Positives:81/166(48%), Gaps:13/166(7%) Query 3 YLTEVFKSVDTSGAFGNKPRTQPI--VIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEM 60 Y T++ +++D G G +++P+ +W++G SG GKS + + ++ ++L N Sbjct 1522 YRTKLQRAIDLLGQQGTMQKSKPVPFCLWVYGHSGCGKSHVCDNVLTEIGSALGINT--- 1578 Query 61 RNFSKNIYMRNVEQEFWDNYQGQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLH 120 + IY R+ + EFW+ Y GQ ++ DF ++ + + EL P+ Sbjct 1579 ---ANPIYTRSPDVEFWNGYTGQKLISWQDFAKITTGETY-RKQVSELSSLIEPTPFNPP 1634 Query 121 MAHLEDKRKTKFTSKVIIMTSNVFEQDVNSLTFPDA---FRRRVDL 163 A LEDKRK V + ++ F + V ++ D+ +RRR L Sbjct 1635 FAALEDKRKIADAWAVYVSSNKAFPE-VQNMGMEDSALFYRRRHAL 1679 >RecName: Full=RNA1 polyprotein; AltName: Full=Genome polyprotein B; Contains: RecName: Full=Protease cofactor; Contains: RecName: Full=Putative helicase; AltName: Full=Membrane-binding protein; AltName: Full=NTP-binding protein; Short=NTB; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Picornain 3C-like protease; Short=3C-like protease; Contains: RecName: Full=RNA-directed RNA polymerase [Broad bean wilt virus 2] Sequence ID: Q9WNW0.1 Length: 1870 Range 1: 489 to 632 Score:60.8 bits(146), Expect:2e-11, Method:Compositional matrix adjust., Identities:46/158(29%), Positives:75/158(47%), Gaps:15/158(9%) Query 4 LTEVFKSVDTSGAFGNKPRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNF 63 L E+ SV SG+ N R P +++ G SG GK+ + +AI+ + E + Sbjct 489 LIELHNSVVMSGS--NTTRKAPFMVFFTGASGTGKTSVVQRVAINW-------LQEEQLG 539 Query 64 SKNIYMRNVEQEFWDNYQGQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAH 123 + IY RN + FW Y+ +V DDFG + ++SN E+I + PY MA Sbjct 540 TNEIYSRNGQDPFWSGYKRHAVVTYDDFGAVPGTTSNE----AEIINVISRNPYATVMAG 595 Query 124 LEDKRKTKFTSKVIIMTSNVFEQDVNSLTF-PDAFRRR 160 L +K F S++++ + N + S +A+ RR Sbjct 596 LAEK-GMYFDSRLVLASRNFLAANPESGVHDSEAYERR 632 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Putative leader protein; Contains: RecName: Full=Capsid protein 1; Short=CP-1; AltName: Full=22.5 kDa protein; AltName: Full=Coat protein 1; Contains: RecName: Full=Capsid protein 2; Short=CP-2; AltName: Full=26 kDa protein; AltName: Full=Coat protein 2; Contains: RecName: Full=Capsid protein 3; Short=CP-3; AltName: Full=31 kDa protein; AltName: Full=Coat protein 3; Contains: RecName: Full=Putative helicase; AltName: Full=Putative NTP-binding protein; Contains: RecName: Full=Probable picornain 3C-like protease; Short=3C-like protease; Contains: RecName: Full=Probable RNA-directed RNA polymerase [Parsnip yellow fleck virus (isolate P-121)] Sequence ID: Q05057.1 Length: 3027 Range 1: 1457 to 1599 Score:60.8 bits(146), Expect:2e-11, Method:Compositional matrix adjust., Identities:49/152(32%), Positives:75/152(49%), Gaps:10/152(6%) Query 22 RTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWDNYQ 81 R P + L+G G GKS + L D+ LD + E + + Y + +E+W Y Sbjct 1457 RVDPFHVSLYGSPGVGKSFVMGKLLDDV----LDFMSEPQ--ADRCYSKTPNEEYWSGYI 1510 Query 82 GQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKVIIMTS 141 GQ V DD GQ D S +P + ++I+ + + MA L +K +T FTSK I T+ Sbjct 1511 GQTAVKCDDLGQ--DLSKGFSPTYNQIIQMKTNNCFIVPMADLANKGRT-FTSKYIFSTT 1567 Query 142 NVFEQDV-NSLTFPDAFRRRVDLCAEVKNKDE 172 NV + L P AF RR ++ EV+ + + Sbjct 1568 NVPGCGTKHGLADPGAFMRRRNIFVEVETEGD 1599 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protein; Short=L; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Rho; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=Beta; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=Gamma; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=Alpha; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; AltName: Full=G; Contains: RecName: Full=Protein 2B; Short=I; Short=P2B; Contains: RecName: Full=Protein 2C; Short=C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=VPg; Short=P3B; AltName: Full=H; AltName: Full=Protein 3B; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; AltName: Full=p22; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=E; AltName: Full=Protein 3D; Short=3D; Flags: Precursor [Mengo virus] Sequence ID: P12296.3 Length: 2293 Range 1: 1304 to 1429 Score:60.1 bits(144), Expect:4e-11, Method:Compositional matrix adjust., Identities:40/140(29%), Positives:74/140(52%), Gaps:14/140(10%) Query 22 RTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWDNYQ 81 R +P+VI L G++G+GKS + +A ++ ++ +++Y + +F+D Y+ Sbjct 1304 RCEPVVIVLRGDAGQGKSLSSQIIAQAVSKTIFGR--------QSVYSLPPDSDFFDGYE 1355 Query 82 GQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKVIIMTS 141 Q DD GQ D S F +++ T N+ P +MA LE ++ T FTS++++ T+ Sbjct 1356 NQFAAIMDDLGQNPDGSDFTT--FCQMVSTTNLLP---NMASLE-RKGTPFTSQLVVATT 1409 Query 142 NVFEQDVNSLTFPDAFRRRV 161 N+ E ++ A RR+ Sbjct 1410 NLPEFRPVTIAHYPAVERRI 1429 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protein; Short=L; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Rho; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=Beta; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=Gamma; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=Alpha; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; AltName: Full=G; Contains: RecName: Full=Protein 2B; Short=I; Short=P2B; Contains: RecName: Full=Protein 2C; Short=C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=VPg; Short=P3B; AltName: Full=H; AltName: Full=Protein 3B; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; AltName: Full=p22; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=E; AltName: Full=Protein 3D; Short=3D; Flags: Precursor [cardiovirus A1] Sequence ID: Q66765.1 Length: 2292 Range 1: 1303 to 1428 Score:59.3 bits(142), Expect:8e-11, Method:Compositional matrix adjust., Identities:40/140(29%), Positives:73/140(52%), Gaps:14/140(10%) Query 22 RTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWDNYQ 81 R +P+VI L G++G+GKS + +A ++ ++ +++Y + +F+D Y+ Sbjct 1303 RCEPVVIVLRGDAGQGKSLSSQVIAQAVSKTIFGR--------QSVYSLPPDSDFFDGYE 1354 Query 82 GQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKVIIMTS 141 Q DD GQ D S F +++ T N P +MA LE ++ T FTS++++ T+ Sbjct 1355 NQFAAIMDDLGQNPDGSDFTT--FCQMVSTTNFLP---NMASLE-RKGTPFTSQLVVATT 1408 Query 142 NVFEQDVNSLTFPDAFRRRV 161 N+ E ++ A RR+ Sbjct 1409 NLPEFRPVTIAHYPAVERRI 1428 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protein; Short=L; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=VPg; Short=P3B; AltName: Full=Protein 3B; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D; Flags: Precursor [Theiler's encephalomyelitis virus (STRAIN BEAN 8386)] Sequence ID: P08544.1 Length: 2303 Range 1: 1302 to 1426 Score:59.3 bits(142), Expect:9e-11, Method:Compositional matrix adjust., Identities:44/143(31%), Positives:74/143(51%), Gaps:23/143(16%) Query 22 RTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWDNYQ 81 R +P+V+ L G +G+GKS + +A +V +M +++Y + E++D Y+ Sbjct 1302 RPEPVVVVLRGAAGQGKSVTSQIIA--------QSVSKMAFGRQSVYSMPPDSEYFDGYE 1353 Query 82 GQNIVCXDDFGQMRDSSSNPNPE----FMELIRTANIAPYPLHMAHLEDKRKTKFTSKVI 137 Q V DD GQ NP+ E F +++ + N P +MAHLE ++ T FTS I Sbjct 1354 NQFSVIMDDLGQ------NPDGEDFTVFCQMVSSTNFLP---NMAHLE-RKGTPFTSSFI 1403 Query 138 IMTSNVFE-QDVNSLTFPDAFRR 159 + T+N+ + + V +P RR Sbjct 1404 VATTNLPKFRPVTVAHYPAVDRR 1426 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protein; Short=L; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Rho; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=Beta; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=Gamma; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=Alpha; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; AltName: Full=G; Contains: RecName: Full=Protein 2B; Short=I; Short=P2B; Contains: RecName: Full=Protein 2C; Short=C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=VPg; Short=P3B; AltName: Full=H; AltName: Full=Protein 3B; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; AltName: Full=p22; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=E; AltName: Full=Protein 3D; Short=3D; Flags: Precursor [Encephalomyocarditis virus] Sequence ID: P03304.1 Length: 2290 Range 1: 1301 to 1426 Score:59.3 bits(142), Expect:9e-11, Method:Compositional matrix adjust., Identities:40/140(29%), Positives:73/140(52%), Gaps:14/140(10%) Query 22 RTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWDNYQ 81 R +P+VI L G++G+GKS + +A ++ ++ +++Y + +F+D Y+ Sbjct 1301 RCEPVVIVLRGDAGQGKSLSSQVIAQAVSKTIFGR--------QSVYSLPPDSDFFDGYE 1352 Query 82 GQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKVIIMTS 141 Q DD GQ D S F +++ T N P +MA LE ++ T FTS++++ T+ Sbjct 1353 NQFAAIMDDLGQNPDGSDFTT--FCQMVSTTNFLP---NMASLE-RKGTPFTSQLVVATT 1406 Query 142 NVFEQDVNSLTFPDAFRRRV 161 N+ E ++ A RR+ Sbjct 1407 NLPEFRPVTIAHYPAVERRI 1426 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protein; Short=L; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=VPg; Short=P3B; AltName: Full=Protein 3B; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D; Flags: Precursor [Theiler's encephalomyelitis virus (STRAIN DA)] Sequence ID: P13899.1 Length: 2301 Range 1: 1300 to 1424 Score:59.3 bits(142), Expect:9e-11, Method:Compositional matrix adjust., Identities:44/143(31%), Positives:74/143(51%), Gaps:23/143(16%) Query 22 RTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWDNYQ 81 R +P+V+ L G +G+GKS + +A +V +M +++Y + E++D Y+ Sbjct 1300 RPEPVVVVLRGAAGQGKSVTSQIIA--------QSVSKMAFGRQSVYSMPPDSEYFDGYE 1351 Query 82 GQNIVCXDDFGQMRDSSSNPNPE----FMELIRTANIAPYPLHMAHLEDKRKTKFTSKVI 137 Q V DD GQ NP+ E F +++ + N P +MAHLE ++ T FTS I Sbjct 1352 NQFSVIMDDLGQ------NPDGEDFTVFCQMVSSTNFLP---NMAHLE-RKGTPFTSSFI 1401 Query 138 IMTSNVFE-QDVNSLTFPDAFRR 159 + T+N+ + + V +P RR Sbjct 1402 VATTNLPKFRPVTVAHYPAVDRR 1424 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protein; Short=L; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Rho; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=Beta; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=Gamma; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=Alpha; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=VPg; Short=P3B; AltName: Full=Protein 3B; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; AltName: Full=p22; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Saffold virus] Sequence ID: C0MHL9.1 Length: 2295 Range 1: 1297 to 1433 Score:58.9 bits(141), Expect:1e-10, Method:Compositional matrix adjust., Identities:46/155(30%), Positives:76/155(49%), Gaps:22/155(14%) Query 22 RTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWDNYQ 81 R +P+V+ L G +G+GKS + +A V ++ +++Y + ++ D Y+ Sbjct 1297 RPEPVVVVLRGNAGQGKSVTSQIIA--------QAVSKLSFGRQSVYSLPPDSDYLDGYE 1348 Query 82 GQNIVCXDDFGQMRDSSSNPNPE----FMELIRTANIAPYPLHMAHLEDKRKTKFTSKVI 137 Q V DD GQ NP+ E F +++ + N P +MAHLE K+ T FTS I Sbjct 1349 NQYSVIMDDLGQ------NPDGEDFKVFCQMVSSTNFLP---NMAHLE-KKGTPFTSNFI 1398 Query 138 IMTSNVFEQDVNSLTFPDAFRRRVDLCAEVKNKDE 172 I T+N+ + ++ A RR+ V+ DE Sbjct 1399 IATTNLPKFRPVTVAHYPAVDRRITFDLTVEAGDE 1433 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protein; Short=L; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Rho; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=Beta; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=Gamma; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=Alpha; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; AltName: Full=G; Contains: RecName: Full=Protein 2B; Short=I; Short=P2B; Contains: RecName: Full=Protein 2C; Short=C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=VPg; Short=P3B; AltName: Full=H; AltName: Full=Protein 3B; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; AltName: Full=p22; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=E; AltName: Full=Protein 3D; Short=3D; Flags: Precursor [Encephalomyocarditis virus strain emc-b nondiabetogenic] Sequence ID: P17593.1 Length: 2292 Range 1: 1303 to 1428 Score:58.9 bits(141), Expect:1e-10, Method:Compositional matrix adjust., Identities:40/140(29%), Positives:72/140(51%), Gaps:14/140(10%) Query 22 RTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWDNYQ 81 R +P+VI L G++G+GKS + +A ++ ++ +++Y + +F+D Y+ Sbjct 1303 RCEPVVIVLRGDAGQGKSLSSQVIAQAVSKTIFGR--------QSVYSLPPDSDFFDGYE 1354 Query 82 GQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKVIIMTS 141 Q DD GQ D S F +++ T N P +MA LE + T FTS++++ T+ Sbjct 1355 NQFAAIMDDLGQNPDGSDFTT--FCQMVSTTNFLP---NMASLE-RNGTPFTSQIVVATT 1408 Query 142 NVFEQDVNSLTFPDAFRRRV 161 N+ E ++ A RR+ Sbjct 1409 NLPEFRPVTIAHYPAVERRI 1428 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protein; Short=L; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Rho; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=Beta; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=Gamma; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=Alpha; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; AltName: Full=G; Contains: RecName: Full=Protein 2B; Short=I; Short=P2B; Contains: RecName: Full=Protein 2C; Short=C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=VPg; Short=P3B; AltName: Full=H; AltName: Full=Protein 3B; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; AltName: Full=p22; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=E; AltName: Full=Protein 3D; Short=3D; Flags: Precursor [Encephalomyocarditis virus strain emc-d diabetogenic] Sequence ID: P17594.2 Length: 2292 Range 1: 1303 to 1428 Score:58.9 bits(141), Expect:1e-10, Method:Compositional matrix adjust., Identities:40/140(29%), Positives:72/140(51%), Gaps:14/140(10%) Query 22 RTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWDNYQ 81 R +P+VI L G++G+GKS + +A ++ ++ +++Y + +F+D Y+ Sbjct 1303 RCEPVVIVLRGDAGQGKSLSSQVIAQAVSKTIFGR--------QSVYSLPPDSDFFDGYE 1354 Query 82 GQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKVIIMTS 141 Q DD GQ D S F +++ T N P +MA LE + T FTS++++ T+ Sbjct 1355 NQFAAIMDDLGQNPDGSDFTT--FCQMVSTTNFLP---NMASLE-RNGTPFTSQIVVATT 1408 Query 142 NVFEQDVNSLTFPDAFRRRV 161 N+ E ++ A RR+ Sbjct 1409 NLPEFRPVTIAHYPAVERRI 1428 >RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains: RecName: Full=Protein X1; Contains: RecName: Full=Protein X2; Contains: RecName: Full=Putative ATP-dependent helicase; AltName: Full=Membrane-binding protein; AltName: Full=NTP-binding protein; Short=NTB; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Picornain 3C-like protease; Short=3C-like protease; Short=PRO; Contains: RecName: Full=RNA-directed RNA polymerase; Short=POL [Tomato ringspot virus (isolate raspberry)] Sequence ID: P29150.2 Length: 2197 Range 1: 786 to 924 Score:58.5 bits(140), Expect:2e-10, Method:Compositional matrix adjust., Identities:46/151(30%), Positives:70/151(46%), Gaps:13/151(8%) Query 22 RTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWDNYQ 81 R P ++L+G GKS A N+ VD M N Y +N +FW Y+ Sbjct 786 RLAPFWVYLYGGPRCGKS----LFAQSFMNA---AVDFMGTTVDNCYFKNARDDFWSGYR 838 Query 82 GQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKVIIMTS 141 + I C DD ++ + EF++LI T Y L+MA +E+K + F SK++I TS Sbjct 839 QEAICCVDDLSSC-ETQPSIESEFIQLITTMR---YGLNMAGVEEKGAS-FDSKMVITTS 893 Query 142 NVFEQDVNS-LTFPDAFRRRVDLCAEVKNKD 171 N F + + A+ R C V+ K+ Sbjct 894 NFFTAPTTAKIASKAAYNDRRHACILVQRKE 924 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protein; Short=L; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=VPg; Short=P3B; AltName: Full=Protein 3B; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D; Flags: Precursor [Theiler's murine encephalomyeltits virus GDVII] Sequence ID: P08545.2 Length: 2303 Range 1: 1302 to 1426 Score:57.8 bits(138), Expect:3e-10, Method:Compositional matrix adjust., Identities:44/143(31%), Positives:73/143(51%), Gaps:23/143(16%) Query 22 RTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWDNYQ 81 R +P+V L G +G+GKS + +A +V +M +++Y + E++D Y+ Sbjct 1302 RPEPVVAVLRGAAGQGKSVTSQIIA--------QSVSKMAFGRQSVYSMPPDSEYFDGYE 1353 Query 82 GQNIVCXDDFGQMRDSSSNPNPE----FMELIRTANIAPYPLHMAHLEDKRKTKFTSKVI 137 Q V DD GQ NP+ E F +++ + N P +MAHLE ++ T FTS I Sbjct 1354 NQFSVIMDDLGQ------NPDGEDFTVFCQMVSSTNFLP---NMAHLE-RKGTPFTSSFI 1403 Query 138 IMTSNVFE-QDVNSLTFPDAFRR 159 + T+N+ + + V +P RR Sbjct 1404 VATTNLPKFRPVTVAHYPAVDRR 1426 >RecName: Full=RNA1 polyprotein; AltName: Full=Genome polyprotein B; AltName: Full=P1; Contains: RecName: Full=Protease cofactor; AltName: Full=32 kDa protein; Contains: RecName: Full=Putative helicase; AltName: Full=58 kDa protein; AltName: Full=Membrane-binding protein; AltName: Full=NTP-binding protein; Short=NTB; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Picornain 3C-like protease; Short=3C-like protease; AltName: Full=24 kDa protein; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=87 kDa protein [Red clover mottle virus] Sequence ID: P35930.1 Length: 1864 Range 1: 473 to 612 Score:56.2 bits(134), Expect:9e-10, Method:Compositional matrix adjust., Identities:45/153(29%), Positives:68/153(44%), Gaps:15/153(9%) Query 22 RTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKN-IYMRNVEQEFWDNY 80 R P ++ G S GKS + L+ + E + ++ +Y RN + W Y Sbjct 473 RKIPFTVFAHGNSRCGKSLLI--------GKLISDFQEHKGLGEDTVYSRNTTETHWSGY 524 Query 81 QGQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKVIIMT 140 + Q IV DDF + S +LI + PY + MA +E+K T F S+ I + Sbjct 525 RRQPIVVIDDFAAVESDISAE----AQLINLVSSTPYSVVMAAIEEKGMT-FDSQFIFAS 579 Query 141 SNVFEQDVNS-LTFPDAFRRRVDLCAEVKNKDE 172 +N E N + DAFR R + +VK K E Sbjct 580 TNFLEVSPNGKIRCDDAFRNRRHVLIDVKLKPE 612 >RecName: Full=RNA1 polyprotein; AltName: Full=B RNA polyprotein; AltName: Full=Bottom component polyprotein; AltName: Full=Genome polyprotein B; AltName: Full=P1; Contains: RecName: Full=Protease cofactor; AltName: Full=32 kDa protein; Contains: RecName: Full=Putative helicase; AltName: Full=58 kDa protein; AltName: Full=Membrane-binding protein; AltName: Full=NTP-binding protein; Short=NTB; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Picornain 3C-like protease; Short=3C-like protease; AltName: Full=24 kDa protein; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=87 kDa protein [Cowpea mosaic virus strain SB] Sequence ID: P03600.1 Length: 1866 Range 1: 468 to 620 Score:56.2 bits(134), Expect:9e-10, Method:Compositional matrix adjust., Identities:47/167(28%), Positives:76/167(45%), Gaps:15/167(8%) Query 4 LTEVFKSVDTSGAFGNKPRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNF 63 L ++ +S G G R P I+ G+S GKS + + D D Sbjct 468 LEQLNRSCSVQGVRG--VRKMPFTIFFQGKSRTGKSLLMSQVTKDFQ-------DHYGLG 518 Query 64 SKNIYMRNVEQEFWDNYQGQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAH 123 + +Y RN ++W Y+ Q V DDF + + P+ E ++I + APYPL+MA Sbjct 519 GETVYSRNPCDQYWSGYRRQPFVLMDDFAAV---VTEPSAE-AQMINLISSAPYPLNMAG 574 Query 124 LEDKRKTKFTSKVIIMTSNVFEQDVNSLTFPD-AFRRRVDLCAEVKN 169 LE+K F S+ + +++N E + D AF+ R + +V N Sbjct 575 LEEK-GICFDSQFVFVSTNFLEVSPEAKVRDDEAFKNRRHVIVQVSN 620 >RecName: Full=RNA1 polyprotein; AltName: Full=Genome polyprotein B; AltName: Full=P1; Contains: RecName: Full=Protease cofactor; Contains: RecName: Full=Putative helicase; AltName: Full=Membrane-binding protein; AltName: Full=NTP-binding protein; Short=NTB; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Picornain 3C-like protease; Short=3C-like protease; Contains: RecName: Full=RNA-directed RNA polymerase [Cherry rasp leaf virus isolate potato] Sequence ID: Q6EWG9.1 Length: 2250 Range 1: 863 to 1004 Score:55.8 bits(133), Expect:1e-09, Method:Compositional matrix adjust., Identities:48/152(32%), Positives:72/152(47%), Gaps:13/152(8%) Query 19 NKPRTQPIVIWLFGE-SGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFW 77 ++ RT P + L+ E G GKS PL N +LD + E + + RNV +F Sbjct 863 DRQRTPPFWVHLYSENGGTGKSMAMMPLG----NHMLDAIGEPK--TCRFVTRNVASKFL 916 Query 78 DNYQGQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKVI 137 + YQ Q D+FG + ++L+ + L+MA + +K T FTSK+I Sbjct 917 NGYQHQPCFLMDEFGAAPKQDYSDEVTMLDLVSPNALT---LNMAAIGEK-NTMFTSKLI 972 Query 138 IMTSN--VFEQDVNSLTFPDAFRRRVDLCAEV 167 I T+N + DV D F RR ++ AEV Sbjct 973 ISTANRRLAHPDVKLGANLDGFLRRRNILAEV 1004 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Rho; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=Beta; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=Gamma; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=Alpha; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; AltName: Full=G; Contains: RecName: Full=Protein 2B; Short=I; Short=P2B; Contains: RecName: Full=Protein 2C; Short=C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=VPg; Short=P3B; AltName: Full=H; AltName: Full=Protein 3B; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; AltName: Full=p22; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Cosavirus A isolate Human/Pakistan/0553/-] Sequence ID: B8XTP8.1 Length: 2124 Range 1: 1120 to 1245 Score:55.8 bits(133), Expect:1e-09, Method:Compositional matrix adjust., Identities:43/141(30%), Positives:72/141(51%), Gaps:16/141(11%) Query 22 RTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWDNYQ 81 R +P+V+ L G+ G GKS +A ++ L+ S+++Y + + E D Y Sbjct 1120 RPEPVVVVLRGKPGVGKSAAATVMAAAVSKLLVG--------SQSVYTLSPDTEHMDGYH 1171 Query 82 GQNIVCXDDFGQMRDSSSNPNPE-FMELIRTANIAPYPLHMAHLEDKRKTKFTSKVIIMT 140 GQ + DD GQ NP+ E F + + A Y MA L+DK FTS+++I T Sbjct 1172 GQFVTLMDDLGQ------NPDGEDFRCFCQMVSCAQYRPAMADLKDK-GILFTSRLLIAT 1224 Query 141 SNVFEQDVNSLTFPDAFRRRV 161 +N+ + + +++ P A RR+ Sbjct 1225 TNLPDFNPVTISDPRALDRRI 1245 >RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains: RecName: Full=P1A protein; Short=1A; AltName: Full=Protease cofactor; Contains: RecName: Full=Putative ATP-dependent helicase; AltName: Full=1B; AltName: Full=Membrane-binding protein; AltName: Full=NTP-binding protein; Short=NTB; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=1C-VPg; Contains: RecName: Full=Picornain 3C-like protease; Short=3C-like protease; AltName: Full=1D-PRO; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=1E-POL [Arabis mosaic virus strain NW] Sequence ID: Q6W8W5.1 Length: 2284 Range 1: 753 to 909 Score:55.1 bits(131), Expect:2e-09, Method:Compositional matrix adjust., Identities:47/170(28%), Positives:77/170(45%), Gaps:15/170(8%) Query 4 LTEVFKSVDTSGAFGNKPRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNF 63 L EV + +G R P +++FG S GK+ + N+ ++ ++ E N Sbjct 753 LEEVHQRTACAG-INEGMRQFPFWVYIFGASQSGKTTIA-------NSVIIPSLLEEMNL 804 Query 64 SK-NIYMRNVEQEFWDNYQGQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMA 122 K ++Y R FW Y Q V DDF + + S + +I N PYPL MA Sbjct 805 PKTSVYSRPKTGGFWSGYARQACVKVDDFYAIEQTPSLAS----SMIDVVNSEPYPLDMA 860 Query 123 HLEDKRKTKFTSKVIIMTSNVFEQDVNS-LTFPDAFRRRVDLCAEVKNKD 171 +L +K + S +++ T+N + N+ +T +F R EV+ KD Sbjct 861 YLHEKGMS-MDSPLVVTTANTVKPPTNAGITDEASFFNRRAAVIEVRRKD 909 >RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains: RecName: Full=Protein X1; Contains: RecName: Full=Protein X2; Contains: RecName: Full=Putative ATP-dependent helicase; AltName: Full=Membrane-binding protein; AltName: Full=NTP-binding protein; Short=NTB; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Picornain 3C-like protease; Short=3C-like protease; Short=PRO; Contains: RecName: Full=RNA-directed RNA polymerase; Short=POL [Blackcurrant reversion virus] Sequence ID: Q8V5E0.1 Length: 2094 Range 1: 672 to 824 Score:55.1 bits(131), Expect:2e-09, Method:Compositional matrix adjust., Identities:45/166(27%), Positives:80/166(48%), Gaps:14/166(8%) Query 4 LTEVFKSVDTSGAFGNKPRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNF 63 LT++ + +G+F + R +P +++G+S GKS D++ +LL N Sbjct 672 LTKIRATCARAGSFDGR-RPEPFWCYIYGKSHCGKSLFME----DVSRALLKENGHAPN- 725 Query 64 SKNIYMRNVEQEFWDNYQGQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAH 123 +IY +N FW Y V DD S + EF++L+ + Y L+MA Sbjct 726 --DIYAKNARDSFWSGYLQHACVQVDDLSACVTRPSLES-EFLQLVGSKM---YSLNMAA 779 Query 124 LEDKRKTKFTSKVIIMTSNVFEQDVNS-LTFPDAFRRRVDLCAEVK 168 +EDK F S +I+ T+NV+ ++ +T DA+ R ++ + + Sbjct 780 VEDK-GMSFNSSIIVTTANVYTAPTSAEITDKDAYGNRRNVVVQCR 824 >RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains: RecName: Full=P1A protein; Short=1A; AltName: Full=Protease cofactor; Contains: RecName: Full=Putative ATP-dependent helicase; AltName: Full=1B; AltName: Full=Membrane-binding protein; AltName: Full=NTP-binding protein; Short=NTB; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=1C-VPg; Contains: RecName: Full=Picornain 3C-like protease; Short=3C-like protease; AltName: Full=1D-PRO; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=1E-POL [Grapevine fanleaf virus] Sequence ID: P29149.1 Length: 2284 Range 1: 771 to 910 Score:54.7 bits(130), Expect:3e-09, Method:Compositional matrix adjust., Identities:43/153(28%), Positives:70/153(45%), Gaps:16/153(10%) Query 22 RTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKN-IYMRNVEQEFWDNY 80 R P +++FG S GK+ + N+ ++ + E N K+ +Y R FW Y Sbjct 771 RAFPFWVYIFGASQSGKTTIA-------NSIIIPALLEEMNLPKSSVYSRPKTGGFWSGY 823 Query 81 QGQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKVIIMT 140 Q V DDF + + S + +I N PYPL MA++ +K + S +++ T Sbjct 824 ARQACVKVDDFYAIEQTPSLAS----SMIDVVNSEPYPLDMAYIHEKGMS-MDSPLVVTT 878 Query 141 SNVFEQDVNS--LTFPDAFRRRVDLCAEVKNKD 171 +N NS + P + RR + EV+ KD Sbjct 879 ANTAVPPTNSQVVDLPSFYNRRAAV-LEVRRKD 910 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Putative leader protein; Contains: RecName: Full=Capsid protein 1; Short=CP-1; AltName: Full=22.5 kDa protein; AltName: Full=Coat protein 1; Contains: RecName: Full=Capsid protein 2; Short=CP-2; AltName: Full=26 kDa protein; AltName: Full=Coat protein 2; Contains: RecName: Full=Capsid protein 3; Short=CP-3; AltName: Full=31 kDa protein; AltName: Full=Coat protein 3; Contains: RecName: Full=Putative helicase; AltName: Full=Putative NTP-binding protein; Contains: RecName: Full=Probable picornain 3C-like protease; Short=3C-like protease; Contains: RecName: Full=Probable RNA-directed RNA polymerase [Rice tungro spherical virus (isolate A)] Sequence ID: Q83034.1 Length: 3473 Range 1: 1765 to 1912 Score:53.9 bits(128), Expect:5e-09, Method:Compositional matrix adjust., Identities:42/157(27%), Positives:73/157(46%), Gaps:10/157(6%) Query 20 KPRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWDN 79 + R P+ + + G G GKS +A + N LLD+ E IY R+ +W N Sbjct 1765 QSRIDPLHVCMLGAPGVGKS----TIAHVVINHLLDHRGEPE--VDRIYTRSCADAYWSN 1818 Query 80 YQGQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKVIIM 139 Y + ++ DD G ++ S+ ++ E++ P+ + MA +EDK K TSK + Sbjct 1819 YHQEPVILYDDLGAIK--SNLRLSDYAEIMGIKTNDPFSVPMAAVEDKGK-HCTSKYVFS 1875 Query 140 TSNVFE-QDVNSLTFPDAFRRRVDLCAEVKNKDEFTK 175 +NV D + A+ RR ++ +V+ + K Sbjct 1876 CTNVLNLDDTGDVVTKMAYYRRRNVLVKVERDPDVPK 1912 >RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains: RecName: Full=P1A protein; Short=1A; AltName: Full=Protease cofactor; Contains: RecName: Full=Putative ATP-dependent helicase; AltName: Full=1B; AltName: Full=Membrane-binding protein; AltName: Full=NTP-binding protein; Short=NTB; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=1C-VPg; Contains: RecName: Full=Picornain 3C-like protease; Short=3C-like protease; AltName: Full=1D-PRO; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=1E-POL [Tobacco ringspot virus] Sequence ID: Q88893.1 Length: 2304 Range 1: 796 to 946 Score:53.9 bits(128), Expect:6e-09, Method:Compositional matrix adjust., Identities:43/165(26%), Positives:82/165(49%), Gaps:16/165(9%) Query 14 SGAFGNKPRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKN-IYMRNV 72 +G F + R +P +++ G S GKS + P++ +L + FS++ IY +N Sbjct 796 AGYFEGR-RMEPFWVYIHGPSHCGKSLLMEPMSRELLRA--------GGFSESSIYTKNS 846 Query 73 EQEFWDNYQGQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKF 132 ++W Y+ Q V DD + ++P+ E +LI PL MA +EDK F Sbjct 847 CDKYWSRYRRQACVQIDD---LSAGKTDPSLE-SQLINLVASKEVPLDMAEVEDK-GILF 901 Query 133 TSKVIIMTSNVFEQDVNS-LTFPDAFRRRVDLCAEVKNKDEFTKM 176 S +++ +SN N+ + +A++ R+++ + + K E++ M Sbjct 902 DSAILVTSSNTAHVPTNANVNHAEAYKNRMNVVIQCRRKPEYSPM 946 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Putative leader protein; Contains: RecName: Full=Capsid protein 1; Short=CP-1; AltName: Full=22.5 kDa protein; AltName: Full=Coat protein 1; Contains: RecName: Full=Capsid protein 2; Short=CP-2; AltName: Full=26 kDa protein; AltName: Full=Coat protein 2; Contains: RecName: Full=Capsid protein 3; Short=CP-3; AltName: Full=31 kDa protein; AltName: Full=Coat protein 3; Contains: RecName: Full=Putative helicase; AltName: Full=Putative NTP-binding protein; Contains: RecName: Full=Probable picornain 3C-like protease; Short=3C-like protease; Contains: RecName: Full=Probable RNA-directed RNA polymerase [Rice tungro spherical virus (isolate Vt6)] Sequence ID: Q91PP5.1 Length: 3471 Range 1: 1762 to 1909 Score:53.1 bits(126), Expect:1e-08, Method:Compositional matrix adjust., Identities:42/157(27%), Positives:73/157(46%), Gaps:10/157(6%) Query 20 KPRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWDN 79 + R P+ + + G G GKS +A + N+LLD+ E IY R +W N Sbjct 1762 QSRIDPLHVCMLGAPGVGKS----TIAHVVINNLLDHRGEPE--VDRIYTRCCADAYWSN 1815 Query 80 YQGQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKVIIM 139 Y + ++ DD G ++ S+ ++ E++ P+ + MA +EDK K TSK + Sbjct 1816 YHQEPVILYDDLGAIK--SNLRLSDYAEIMGIKTNDPFSVPMAAVEDKGK-HCTSKYVFS 1872 Query 140 TSNVFE-QDVNSLTFPDAFRRRVDLCAEVKNKDEFTK 175 +NV D + A+ RR ++ +V+ + K Sbjct 1873 CTNVLNLDDTGDVVTKMAYYRRRNVLVKVERDPDVPK 1909 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protein; Short=L; Contains: RecName: Full=Capsid protein VP0; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=VPg; Short=P3B; AltName: Full=Protein 3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Salivirus NG-J1] Sequence ID: C5MSH2.2 Length: 2374 Range 1: 1362 to 1514 Score:52.8 bits(125), Expect:1e-08, Method:Composition-based stats., Identities:45/167(27%), Positives:82/167(49%), Gaps:14/167(8%) Query 5 TEVFKSVDTSGAFGNKPRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFS 64 + ++ G G +P +P+V++L+G G GKS + LA L +L + + + S Sbjct 1362 STALSAISLVGTPGTRP--EPLVVYLYGPPGTGKSLLASLLASTLAQALSGDPNNYYSPS 1419 Query 65 KNIYMRNVEQEFWDNYQGQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHL 124 + + +F+D Y GQ + DD GQ D + ++ + + + AP+ + MA + Sbjct 1420 ------SPDCKFYDGYSGQPVHYIDDIGQDPDGA-----DWADFVNIVSSAPFIVPMADV 1468 Query 125 EDKRKTKFTSKVIIMTSNVFEQDVNSLTFPDAFRRRVDLCAEVKNKD 171 DK + +TS+V+I+TSN + S A RR+ + V +D Sbjct 1469 NDKGRF-YTSRVVIVTSNFPGPNPRSARCVAALERRLHIRLNVTARD 1514 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protein; Short=L; Contains: RecName: Full=Capsid protein VP0; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=VPg; Short=P3B; AltName: Full=Protein 3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Human klassevirus 1] Sequence ID: C6KEF6.1 Length: 2370 Range 1: 1359 to 1511 Score:52.4 bits(124), Expect:2e-08, Method:Composition-based stats., Identities:45/167(27%), Positives:82/167(49%), Gaps:14/167(8%) Query 5 TEVFKSVDTSGAFGNKPRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFS 64 + ++ G G +P +P+V++L+G G GKS + LA L +L + + + S Sbjct 1359 STALSAISLVGTPGTRP--EPLVVYLYGPPGTGKSLLASLLASTLAQALSGDPNNYYSPS 1416 Query 65 KNIYMRNVEQEFWDNYQGQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHL 124 + + +F+D Y GQ + DD GQ D + ++ + + + AP+ + MA + Sbjct 1417 ------SPDCKFYDGYSGQPVHYIDDIGQDPDGA-----DWADFVNIVSSAPFIVPMADV 1465 Query 125 EDKRKTKFTSKVIIMTSNVFEQDVNSLTFPDAFRRRVDLCAEVKNKD 171 DK + +TS+V+I+TSN + S A RR+ + V +D Sbjct 1466 NDKGRF-YTSRVVIVTSNFPGPNPRSARCVAALERRLHIRLNVTARD 1511 >RecName: Full=Genome polyprotein; Contains: RecName: Full=NS1-2; AltName: Full=NS1.2; AltName: Full=NS1/2; AltName: Full=Nterm; AltName: Full=Protein p37; Contains: RecName: Full=NS1; Contains: RecName: Full=NS2; Contains: RecName: Full=NTPase; AltName: Full=NS3; AltName: Full=p40; Contains: RecName: Full=NS4; AltName: Full=Protein p22; Contains: RecName: Full=Viral genome-linked protein; Short=VPg; AltName: Full=NS5; Contains: RecName: Full=3C-like protease; Short=3CLpro; AltName: Full=Calicivirin; AltName: Full=NS6; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=NS7 [Lordsdale virus] Sequence ID: P54634.1 Length: 1699 Range 1: 485 to 612 Score:52.0 bits(123), Expect:3e-08, Method:Compositional matrix adjust., Identities:41/141(29%), Positives:67/141(47%), Gaps:13/141(9%) Query 22 RTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWDNYQ 81 R +P+V+ + G+ G GK+ + LA + SL + + RN + WD Y+ Sbjct 485 RLRPVVVMISGKPGIGKTHLARELAKRIAASLTGDQ------RVGLIPRN-GVDHWDAYK 537 Query 82 GQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKVIIMTS 141 G+ +V DD+G SNP + + L A+ P L+ +E+K K F S II+T+ Sbjct 538 GERVVLWDDYGM-----SNPIHDALRLQELADTCPLTLNCDRIENKGKV-FDSDAIIITT 591 Query 142 NVFEQDVNSLTFPDAFRRRVD 162 N+ +A RR+D Sbjct 592 NLANPAPLDYVNFEACSRRID 612 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Enterovirus A71] Sequence ID: B9VUU3.1 Length: 2193 Range 1: 1225 to 1365 Score:52.0 bits(123), Expect:3e-08, Method:Compositional matrix adjust., Identities:41/161(25%), Positives:75/161(46%), Gaps:24/161(14%) Query 17 FGNKPRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEF 76 F +K R +P+ + + G G GKS T +A + + + ++Y + + Sbjct 1225 FKSKHRIEPVCLIIRGSPGTGKSLATGIIARAIAD----------KYHSSVYSLPPDPDH 1274 Query 77 WDNYQGQNIVCXDDFGQMRDSSSNPNPE----FMELIRTANIAPYPLHMAHLEDKRKTKF 132 +D Y+ Q + DD Q NP+ + F +++ T + P MA LE+K F Sbjct 1275 FDGYKQQVVTVMDDLCQ------NPDGKDMSLFCQMVSTVDFIP---PMASLEEK-GVSF 1324 Query 133 TSKVIIMTSNVFEQDVNSLTFPDAFRRRVDLCAEVKNKDEF 173 TSK +I ++N V +++ DA RRR + +++ D + Sbjct 1325 TSKFVIASTNATNIIVPTVSDSDAIRRRFYMDCDIEVTDSY 1365 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Human enterovirus 71 (strain BRCR)] Sequence ID: Q66478.3 Length: 2193 Range 1: 1225 to 1365 Score:51.6 bits(122), Expect:3e-08, Method:Compositional matrix adjust., Identities:41/161(25%), Positives:75/161(46%), Gaps:24/161(14%) Query 17 FGNKPRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEF 76 F +K R +P+ + + G G GKS T +A + + + ++Y + + Sbjct 1225 FKSKHRIEPVCLIIRGSPGTGKSLATGIIARAIAD----------KYRSSVYSLPPDPDH 1274 Query 77 WDNYQGQNIVCXDDFGQMRDSSSNPNPE----FMELIRTANIAPYPLHMAHLEDKRKTKF 132 +D Y+ Q + DD Q NP+ + F +++ T + P MA LE+K F Sbjct 1275 FDGYKQQVVAVMDDLCQ------NPDGKDMSLFCQMVSTVDFVP---PMASLEEK-GVSF 1324 Query 133 TSKVIIMTSNVFEQDVNSLTFPDAFRRRVDLCAEVKNKDEF 173 TSK +I ++N V +++ DA RRR + +++ D + Sbjct 1325 TSKFVIASTNASNIIVPTVSDSDAIRRRFYMDCDIEVTDSY 1365 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Coxsackievirus A16 (strain Tainan/5079/98)] Sequence ID: Q9QF31.3 Length: 2193 Range 1: 1225 to 1365 Score:51.6 bits(122), Expect:4e-08, Method:Compositional matrix adjust., Identities:41/161(25%), Positives:75/161(46%), Gaps:24/161(14%) Query 17 FGNKPRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEF 76 F +K R +P+ + + G G GKS T +A + + + ++Y + + Sbjct 1225 FKSKHRIEPVCLIIRGSPGTGKSLATGIIARAIAD----------KYHSSVYSLPPDPDH 1274 Query 77 WDNYQGQNIVCXDDFGQMRDSSSNPNPE----FMELIRTANIAPYPLHMAHLEDKRKTKF 132 +D Y+ Q + DD Q NP+ + F +++ T + P MA LE+K F Sbjct 1275 FDGYKQQVVTVMDDLCQ------NPDGKDMSLFCQMVSTVDFIP---PMASLEEK-GVSF 1324 Query 133 TSKVIIMTSNVFEQDVNSLTFPDAFRRRVDLCAEVKNKDEF 173 TSK +I ++N V +++ DA RRR + +++ D + Sbjct 1325 TSKFVIASTNASNIVVPTVSDSDAIRRRFYMDCDIEVTDSY 1365 >RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains: RecName: Full=P1A protein; Short=1A; AltName: Full=Protease cofactor; Contains: RecName: Full=Putative ATP-dependent helicase; AltName: Full=1B; AltName: Full=Membrane-binding protein; AltName: Full=NTP-binding protein; Short=NTB; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=1C-VPg; Contains: RecName: Full=Picornain 3C-like protease; Short=3C-like protease; AltName: Full=1D-PRO; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=1E-POL [Grapevine chrome mosaic virus] Sequence ID: P13025.1 Length: 2252 Range 1: 733 to 889 Score:51.6 bits(122), Expect:4e-08, Method:Compositional matrix adjust., Identities:50/173(29%), Positives:81/173(46%), Gaps:19/173(10%) Query 1 MRYLTEVFKSVDTSGAFGNKPRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEM 60 M+ L E+ K + G + R +P+ I+L+G S GKS L + L Sbjct 733 MKDLLELQKRMMRCGTVTGR-RKEPVWIYLWGPSHCGKSNFMDVLGMALCKHF------- 784 Query 61 RNFSKNIYMRNVEQEFWDNYQGQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLH 120 + + RNV+ F+ Y GQ I+ DD ++ ++P P ELI + YPL+ Sbjct 785 -DLPYTVCGRNVKDSFFSGYMGQTIMEIDDLSSIK---TDP-PMEGELINLVSCKDYPLN 839 Query 121 MAHLEDKRKTKFTSKVIIMTSNVFEQDVNS---LTFPDAFRRRVDLCAEVKNK 170 MA + DK F S+ +I +SN ++DV + + ++R R EV+ K Sbjct 840 MADVADK-PIYFKSQFVISSSN--QEDVPAGAGVRDISSYRSRKAALIEVRRK 889 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Human coxsackievirus A16 (strain G-10)] Sequence ID: Q65900.3 Length: 2193 Range 1: 1225 to 1365 Score:51.6 bits(122), Expect:4e-08, Method:Compositional matrix adjust., Identities:41/161(25%), Positives:75/161(46%), Gaps:24/161(14%) Query 17 FGNKPRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEF 76 F +K R +P+ + + G G GKS T +A + + + ++Y + + Sbjct 1225 FKSKHRIEPVCLIIRGSPGTGKSLATGIIARAIAD----------KYHSSVYSLPPDPDH 1274 Query 77 WDNYQGQNIVCXDDFGQMRDSSSNPNPE----FMELIRTANIAPYPLHMAHLEDKRKTKF 132 +D Y+ Q + DD Q NP+ + F +++ T + P MA LE+K F Sbjct 1275 FDGYKQQVVTVMDDLCQ------NPDGKDMSLFCQMVSTVDFIP---PMASLEEK-GVSF 1324 Query 133 TSKVIIMTSNVFEQDVNSLTFPDAFRRRVDLCAEVKNKDEF 173 TSK +I ++N V +++ DA RRR + +++ D + Sbjct 1325 TSKFVIASTNASNIIVPTVSDSDAIRRRFYMDCDIEVTDSY 1365 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [enterovirus D68] Sequence ID: Q68T42.1 Length: 2188 Range 1: 1213 to 1361 Score:51.2 bits(121), Expect:4e-08, Method:Compositional matrix adjust., Identities:40/165(24%), Positives:74/165(44%), Gaps:16/165(9%) Query 9 KSVDTSGAFGNKPRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIY 68 K ++ F +K R +P+ + + G G GKS + +A + L +IY Sbjct 1213 KKINNYIQFKSKSRIEPVCLIIHGSPGTGKSVASNLIARAITEKL----------GGDIY 1262 Query 69 MRNVEQEFWDNYQGQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKR 128 + +++D Y+ Q +V DD M++ N F +++ T + P MA LE+K Sbjct 1263 SLPPDPKYFDGYKQQTVVLMDDL--MQNPDGNDISMFCQMVSTVDFIP---PMASLEEK- 1316 Query 129 KTKFTSKVIIMTSNVFEQDVNSLTFPDAFRRRVDLCAEVKNKDEF 173 T +TS +I T+N +++ A RR +++ D + Sbjct 1317 GTLYTSPFLIATTNAGSIHAPTVSDSKALSRRFKFDVDIEVTDSY 1361 >RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains: RecName: Full=P1A protein; Short=1A; AltName: Full=protease cofactor; Contains: RecName: Full=Putative ATP-dependent helicase; AltName: Full=1B; AltName: Full=NTP-binding protein; Short=NTB; AltName: Full=membrane-binding protein; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=1C-VPg; Contains: RecName: Full=Picornain 3C-like protease; Short=3C-like protease; AltName: Full=1D-PRO; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=1E-POL [Tomato black ring virus (strain MJ)] Sequence ID: Q8B8X3.1 Length: 2266 Range 1: 751 to 907 Score:50.4 bits(119), Expect:8e-08, Method:Compositional matrix adjust., Identities:52/173(30%), Positives:72/173(41%), Gaps:19/173(10%) Query 1 MRYLTEVFKSVDTSGAFGNKPRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDN-VDE 59 M+ L E+ K +G + R +P+ I+LFG+ GKS S LDN + + Sbjct 751 MKDLVELHKRTIRAGISEGR-RCEPVWIYLFGQRHCGKSNFM---------STLDNALAK 800 Query 60 MRNFSKNIYMRNVEQEFWDNYQGQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPL 119 N RN + F+ Y GQ DD ++ P ELI + PL Sbjct 801 HFNLPNTTAYRNCKDAFYSGYSGQTFFHMDDLSSVKLEP----PLEAELINLVSCQEVPL 856 Query 120 HMAHLEDKRKTKFTSKVIIMTSNVFEQDVNSLTFPD--AFRRRVDLCAEVKNK 170 +MA L DK F S II +SN FE D A+R R E++ K Sbjct 857 NMADLADK-PIYFRSPFIISSSN-FEDVPAGCGVRDIEAYRARKACLVEMRRK 907 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Bovine enterovirus strain VG-5-27] Sequence ID: P12915.3 Length: 2175 Range 1: 1195 to 1345 Score:50.4 bits(119), Expect:8e-08, Method:Compositional matrix adjust., Identities:44/168(26%), Positives:77/168(45%), Gaps:18/168(10%) Query 9 KSVDTSGAFGNKPRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIY 68 K V + F K R +P+ + G G G+S LA + L + ++Y Sbjct 1195 KRVLGAMQFKTKNRIEPVCALIHGSPGTGQS-----LATMIVGRKLAEYE-----GSDVY 1244 Query 69 MRNVEQEFWDNYQGQNIVCXDDFGQMRDSSSNPNPEFMELI-RTANIAPYPLHMAHLEDK 127 + + +D YQ Q +V DD Q NP+ + M L + + AP+ + MA LEDK Sbjct 1245 SLPPDPDHFDGYQQQAVVVMDDLLQ------NPDGKDMTLFCQMVSTAPFTVPMAALEDK 1298 Query 128 RKTKFTSKVIIMTSNVFEQDVNSLTFPDAFRRRVDLCAEVKNKDEFTK 175 K FTSK ++ ++N + ++ A +RR +++ + E+ + Sbjct 1299 GKL-FTSKFVLASTNAGQVTPPTVADYKALQRRFFFDCDIEVQKEYKR 1345 >RecName: Full=Genome polyprotein; Contains: RecName: Full=NS1; AltName: Full=Protein p18; Contains: RecName: Full=NS2; AltName: Full=Protein p32; Contains: RecName: Full=NTPase; AltName: Full=NS3; AltName: Full=p39; Contains: RecName: Full=NS4; AltName: Full=3A-like protein p30; AltName: Full=Protein p30; Contains: RecName: Full=Viral genome-linked protein; Short=VPg; AltName: Full=NS5; AltName: Full=p13; Contains: RecName: Full=Protease-polymerase p76; Short=Pro-Pol; AltName: Full=NS6-7 [Canine calicivirus (strain 48)] Sequence ID: Q8V736.1 Length: 1929 Range 1: 613 to 732 Score:50.4 bits(119), Expect:8e-08, Method:Compositional matrix adjust., Identities:44/141(31%), Positives:69/141(48%), Gaps:24/141(17%) Query 22 RTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWDNYQ 81 RT P+ I L G +G GK+ + + +A L+ ++ + N+ + D Y Sbjct 613 RTAPVCIILTGPAGCGKTTLAYAIANRLS-------------AQKPSVLNLNIDHHDAYT 659 Query 82 GQNIVCXDDFGQMRDSSSNPNPEFME-LIRTANIAPYPLHMAHLEDKRKTKFTSKVIIMT 140 G + D+F SNP+ +F+E ++ N P L+ +E+K KT F+SK +IMT Sbjct 660 GNEVCIIDEF------DSNPDSKFVEFVVEMVNTNPMLLNCDLIENKGKT-FSSKYVIMT 712 Query 141 SNVFEQDV--NSLTFPDAFRR 159 SN E V NS P +RR Sbjct 713 SN-NETPVKPNSTRAPPFYRR 732 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Human enterovirus 71 (strain 7423/MS/87)] Sequence ID: Q66479.3 Length: 2193 Range 1: 1225 to 1363 Score:50.4 bits(119), Expect:9e-08, Method:Compositional matrix adjust., Identities:41/159(26%), Positives:74/159(46%), Gaps:24/159(15%) Query 17 FGNKPRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEF 76 F + R +P+ + + G G GKS T +A + + + ++Y + + Sbjct 1225 FKSTHRIEPVCLIIRGSPGTGKSLATGIIARAIAD----------KYHSSVYSLPPDPDH 1274 Query 77 WDNYQGQNIVCXDDFGQMRDSSSNPNPE----FMELIRTANIAPYPLHMAHLEDKRKTKF 132 +D Y+ Q + DD Q NP+ + F +++ T +I P MA LE+K F Sbjct 1275 FDGYKQQVVTVMDDLCQ------NPDGKDMSLFYQMVSTVDIIP---PMASLEEK-GVSF 1324 Query 133 TSKVIIMTSNVFEQDVNSLTFPDAFRRRVDLCAEVKNKD 171 TSK +I ++N V +++ DA RRR + +++ D Sbjct 1325 TSKFVIASTNASNIIVPTVSDSDAIRRRFYMDCDIEVTD 1363 >RecName: Full=Genome polyprotein; Contains: RecName: Full=NS1-2; AltName: Full=NS1.2; AltName: Full=NS1/2; AltName: Full=Protein p37; Contains: RecName: Full=NS1; Contains: RecName: Full=NS2; Contains: RecName: Full=NTPase; AltName: Full=NS3; AltName: Full=p41; Contains: RecName: Full=NS4; AltName: Full=Protein p20; Contains: RecName: Full=Viral genome-linked protein; Short=VPg; AltName: Full=NS5; Contains: RecName: Full=3C-like protease; Short=3CLpro; AltName: Full=Calicivirin; AltName: Full=NS6; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=NS7 [Murine norovirus 1] Sequence ID: Q80J95.3 Length: 1687 Range 1: 494 to 622 Score:49.7 bits(117), Expect:2e-07, Method:Compositional matrix adjust., Identities:46/144(32%), Positives:68/144(47%), Gaps:17/144(11%) Query 22 RTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWDNYQ 81 R +P+VI + G G GK+ LA + SL D S I R + + WD Y+ Sbjct 494 RVRPVVIMVSGRPGIGKTCFCQNLAKRIAASLGDET------SVGIIPR-ADVDHWDAYK 546 Query 82 GQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKVIIMTS 141 G +V DDFG N + + L A+ P L+ +E+K K F S+VII+T+ Sbjct 547 GARVVLWDDFGM-----DNVVKDALRLQMLADTCPVTLNCDRIENKGKM-FDSQVIIITT 600 Query 142 NVFEQDVNSLTFP--DAFRRRVDL 163 N +Q L + +A RR+D Sbjct 601 N--QQTPVPLDYVNLEAVCRRIDF 622 >RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains: RecName: Full=Putative helicase; AltName: Full=Putative NTP-binding protein; Contains: RecName: Full=Probable picornain 3C-like protease; Short=3C-like protease; Contains: RecName: Full=Probable RNA-directed RNA polymerase [Satsuma dwarf virus S-58] Sequence ID: Q9WAL8.1 Length: 2081 Range 1: 734 to 871 Score:49.7 bits(117), Expect:2e-07, Method:Compositional matrix adjust., Identities:45/147(31%), Positives:63/147(42%), Gaps:10/147(6%) Query 25 PIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWDNYQGQN 84 P V++ G+SG GKS +LD + + + Y RN ++FW Y Sbjct 734 PFVLFFAGDSGVGKSTAMK----KFREEVLDKLGYPK--TARFYPRNPGEKFWSGYLRHT 787 Query 85 IVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKVIIMTSNVF 144 V DDF Q+ + ELIR A + MA E+K +T F SK + +N + Sbjct 788 AVIYDDFAQIPQGDMTYDEA--ELIRIVTNAVVTVPMAIAEEKGRT-FRSKFVFACTNRY 844 Query 145 -EQDVNSLTFPDAFRRRVDLCAEVKNK 170 E + L AFRRR L V K Sbjct 845 CESEDAPLADEMAFRRRRHLYIHVARK 871 >RecName: Full=Genome polyprotein; Contains: RecName: Full=NS1; AltName: Full=Protein p11; Contains: RecName: Full=NS2; AltName: Full=Protein p28; Contains: RecName: Full=NTPase; AltName: Full=NS3; AltName: Full=p35; Contains: RecName: Full=NS4; AltName: Full=Protein p32; Contains: RecName: Full=Viral genome-linked protein; Short=VPg; AltName: Full=NS5; AltName: Full=p14; Contains: RecName: Full=Protease-polymerase p70; Short=Pro-Pol; AltName: Full=NS6-7; Contains: RecName: Full=Capsid protein; Short=CP; AltName: Full=VP1; AltName: Full=p60 [Sapovirus Mc10] Sequence ID: Q6XDK8.1 Length: 2278 Range 1: 468 to 589 Score:49.7 bits(117), Expect:2e-07, Method:Compositional matrix adjust., Identities:45/144(31%), Positives:63/144(43%), Gaps:23/144(15%) Query 19 NKPRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWD 78 + PR P+ I L G G GK+ + LA ++ NFS V + D Sbjct 468 DTPRKTPVAIILTGPPGIGKTRLAQHLAAGFG--------KVSNFS-------VTLDHHD 512 Query 79 NYQGQNIVCXDDFGQMRDSSSNPNPEFME-LIRTANIAPYPLHMAHLEDKRKTKFTSKVI 137 +Y G + D+F + +F+E +I N APYPL+ +E+K K FTS I Sbjct 513 SYTGNEVAIWDEF------DVDTQGKFVETMIGVVNTAPYPLNCDRVENKGKV-FTSDYI 565 Query 138 IMTSNVFEQDVNSLTFPDAFRRRV 161 I TSN + AF RRV Sbjct 566 ICTSNYPTSVLPDNPRAGAFYRRV 589 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [rhinovirus B3] Sequence ID: Q82081.4 Length: 2178 Range 1: 1213 to 1355 Score:48.9 bits(115), Expect:2e-07, Method:Compositional matrix adjust., Identities:40/163(25%), Positives:73/163(44%), Gaps:24/163(14%) Query 17 FGNKPRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEF 76 F +K RT+P+ + + G G GKS L S++ +F+ ++Y + + Sbjct 1213 FKSKQRTEPVCVLIHGTPGSGKS---------LTTSIVGRA-LAEHFNSSVYSLPPDPKH 1262 Query 77 WDNYQGQNIVCXDDFGQMRDSSSNPNPE----FMELIRTANIAPYPLHMAHLEDKRKTKF 132 +D YQ Q +V DD Q NP+ + F +++ + + P MA L D + F Sbjct 1263 FDGYQQQEVVIMDDLNQ------NPDGQDISMFCQMVSSVDFLP---PMASL-DNKGMLF 1312 Query 133 TSKVIIMTSNVFEQDVNSLTFPDAFRRRVDLCAEVKNKDEFTK 175 TS ++ ++N ++ P+A RR ++ +TK Sbjct 1313 TSNFVLASTNSNTLSPPTILNPEALIRRFGFDLDICMHSTYTK 1355 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Human enterovirus 70 (strain J670/71)] Sequence ID: P32537.4 Length: 2194 Range 1: 1227 to 1367 Score:48.9 bits(115), Expect:3e-07, Method:Compositional matrix adjust., Identities:38/157(24%), Positives:71/157(45%), Gaps:16/157(10%) Query 17 FGNKPRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEF 76 F +K R +P+ + + G G GKS + +A + L + Y + ++ Sbjct 1227 FKSKSRIEPVCLIIHGSPGTGKSVASNLIARAITEKL----------GGDSYSLPPDPKY 1276 Query 77 WDNYQGQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKV 136 +D Y+ Q +V DD M++ N F +++ T + P MA LE+K T +TS Sbjct 1277 FDGYKQQTVVLMDDL--MQNPDGNDIAMFCQMVSTVDFIP---PMASLEEK-GTLYTSPF 1330 Query 137 IIMTSNVFEQDVNSLTFPDAFRRRVDLCAEVKNKDEF 173 +I T+N +++ A RR E+++ + + Sbjct 1331 LIATTNAGSIHAPTVSDSKALARRFKFDMEIESMESY 1367 >RecName: Full=Genome polyprotein; AltName: Full=p254; Contains: RecName: Full=NS1; AltName: Full=Protein p16; Contains: RecName: Full=NS2; AltName: Full=Protein p23; Contains: RecName: Full=NTPase; AltName: Full=2C-like protein; AltName: Full=NS3; AltName: Full=P2C; AltName: Full=p37; Contains: RecName: Full=Precursor p41; Contains: RecName: Full=NS4; AltName: Full=Protein p29; Contains: RecName: Full=Protein p23/2; Contains: RecName: Full=Protein p18; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=NS5; AltName: Full=VPg; AltName: Full=p13; Contains: RecName: Full=3C-like protease; Short=3CLpro; AltName: Full=Calicivirin; AltName: Full=NS6; AltName: Full=Thiol protease P3C; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=3Dpol; AltName: Full=NS7; AltName: Full=p58; Contains: RecName: Full=Capsid protein VP60 [European brown hare syndrome virus GD] Sequence ID: Q96725.1 Length: 2334 Range 1: 504 to 635 Score:48.5 bits(114), Expect:3e-07, Method:Compositional matrix adjust., Identities:46/155(30%), Positives:72/155(46%), Gaps:26/155(16%) Query 19 NKPRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWD 78 K R QP+ + G G GK+ + LA DL N+ N + +D Sbjct 504 TKQRPQPVAVVFKGAPGIGKTYLVHRLAKDLGCPHPSNI-------------NFGLDHFD 550 Query 79 NYQGQNIVCXDDFGQMRDSSSNPNPEFMEL-IRTANIAPYPLHMAHLEDKRKTKFTSKVI 137 +Y G+++ D+F D ++EL I+ N P PL+ +E+K K F+SK + Sbjct 551 SYTGEDVAIADEFNTSGDE------RWVELFIQMVNTNPCPLNCDKVENKNKV-FSSKYL 603 Query 138 IMTSNVFEQDVNSLTFP--DAFRRRVDLCAEVKNK 170 + T+N V + T P AF RRV + +V+NK Sbjct 604 LCTTN--SSMVLNATHPRATAFYRRV-IIVDVRNK 635 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Human rhinovirus 89 ATCC VR-1199] Sequence ID: P07210.3 Length: 2164 Range 1: 1217 to 1350 Score:48.5 bits(114), Expect:4e-07, Method:Compositional matrix adjust., Identities:42/153(27%), Positives:68/153(44%), Gaps:20/153(13%) Query 22 RTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWDNYQ 81 R +P+ + + G G GKS T LA M +IY + +++D Y Sbjct 1217 RNEPVAVLIHGSPGTGKSLATSVLA------------RMLTVETDIYSLPPDPKYFDGYD 1264 Query 82 GQNIVCXDDFGQMRDSSSNPNPEFMELI-RTANIAPYPLHMAHLEDKRKTKFTSKVIIMT 140 Q++V DD Q NP+ E M L + + P+ MA L DK K FTSK ++ + Sbjct 1265 QQSVVIMDDIMQ------NPSGEDMTLFCQMVSSVPFIPPMADLPDKGK-PFTSKFVLAS 1317 Query 141 SNVFEQDVNSLTFPDAFRRRVDLCAEVKNKDEF 173 +N +++ A RR +++ K E+ Sbjct 1318 TNHTLLTPPTVSSLPAMARRFYFDLDIQVKKEY 1350 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Human poliovirus 1 Mahoney] Sequence ID: P03300.3 Length: 2209 Range 1: 1241 to 1383 Score:47.4 bits(111), Expect:1e-06, Method:Compositional matrix adjust., Identities:40/159(25%), Positives:69/159(43%), Gaps:16/159(10%) Query 17 FGNKPRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEF 76 F +K R +P+ + + G G GKS T N + + E N S Y + Sbjct 1241 FKSKHRIEPVCLLVHGSPGTGKSVAT--------NLIARAIAERENTST--YSLPPDPSH 1290 Query 77 WDNYQGQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKV 136 +D Y+ Q +V DD Q D + F +++ T P MA LE+K FTS Sbjct 1291 FDGYKQQGVVIMDDLNQNPDGADMK--LFCQMVSTVEFIP---PMASLEEK-GILFTSNY 1344 Query 137 IIMTSNVFEQDVNSLTFPDAFRRRVDLCAEVKNKDEFTK 175 ++ ++N ++ DA RR +++ +E+++ Sbjct 1345 VLASTNSSRISPPTVAHSDALARRFAFDMDIQVMNEYSR 1383 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Human poliovirus 1 strain Sabin] Sequence ID: P03301.3 Length: 2209 Range 1: 1241 to 1383 Score:47.0 bits(110), Expect:1e-06, Method:Compositional matrix adjust., Identities:40/159(25%), Positives:69/159(43%), Gaps:16/159(10%) Query 17 FGNKPRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEF 76 F +K R +P+ + + G G GKS T N + + E N S Y + Sbjct 1241 FKSKHRIEPVCLLVHGSPGTGKSVAT--------NLIARAIAERENTST--YSLPPDPSH 1290 Query 77 WDNYQGQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKV 136 +D Y+ Q +V DD Q D + F +++ T P MA LE+K FTS Sbjct 1291 FDGYKQQGVVIMDDLNQNPDGADMK--LFCQMVSTVEFIP---PMASLEEK-GILFTSNY 1344 Query 137 IIMTSNVFEQDVNSLTFPDAFRRRVDLCAEVKNKDEFTK 175 ++ ++N ++ DA RR +++ +E+++ Sbjct 1345 VLASTNSSRISPPTVAHSDALARRFAFDMDIQVMNEYSR 1383 >RecName: Full=Genome polyprotein; Contains: RecName: Full=NS1; AltName: Full=Protein p11; Contains: RecName: Full=NS2; AltName: Full=Protein p28; Contains: RecName: Full=NTPase; AltName: Full=NS3; AltName: Full=p35; Contains: RecName: Full=NS4; AltName: Full=Protein p32; Contains: RecName: Full=Viral genome-linked protein; Short=VPg; AltName: Full=NS5; AltName: Full=p14; Contains: RecName: Full=Protease-polymerase p70; Short=Pro-Pol; AltName: Full=NS6-7; Contains: RecName: Full=Capsid protein; Short=CP; AltName: Full=VP1; AltName: Full=p60 [Manchester virus] Sequence ID: Q69014.2 Length: 2280 Range 1: 467 to 597 Score:46.6 bits(109), Expect:2e-06, Method:Compositional matrix adjust., Identities:48/154(31%), Positives:66/154(42%), Gaps:24/154(15%) Query 19 NKPRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWD 78 + PR P+VI L G G GK+ L + + NFS V + D Sbjct 467 DTPRRVPVVIILTGAPGIGKT--------RLAQYIGQRFGKTSNFS-------VAVDHHD 511 Query 79 NYQGQNIVCXDDFGQMRDSSSNPNPEFME-LIRTANIAPYPLHMAHLEDKRKTKFTSKVI 137 Y G + D+F DS F+E +I AN AP+PL+ +E+K + FTS + Sbjct 512 GYTGNTVCIWDEFDV--DSKG----AFVETMIGIANTAPFPLNCDRVENKGRV-FTSDYV 564 Query 138 IMTSNVFEQDVNSLTFPDAFRRRVDLCAEVKNKD 171 I TSN + AF RRV L +V D Sbjct 565 ICTSNYPTSVIPDNPRAAAFYRRV-LTVDVSAPD 597 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [rhinovirus B14] Sequence ID: P03303.3 Length: 2179 Range 1: 1214 to 1349 Score:46.6 bits(109), Expect:2e-06, Method:Compositional matrix adjust., Identities:39/156(25%), Positives:70/156(44%), Gaps:28/156(17%) Query 17 FGNKPRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEF 76 F +K R +P+ + + G G GKS L S++ +F+ +Y + + Sbjct 1214 FKSKQRIEPVCVLIHGTPGSGKS---------LTTSIVGRAIA-EHFNSAVYSLPPDPKH 1263 Query 77 WDNYQGQNIVCXDDFGQMRDSSSNPNPE----FMELIRTANIAPYPLHMAHLEDKRKTKF 132 +D YQ Q +V DD Q NP+ + F +++ + + P MA L D + F Sbjct 1264 FDGYQQQEVVIMDDLNQ------NPDGQDISMFCQMVSSVDFLP---PMASL-DNKGMLF 1313 Query 133 TSKVIIMTSNVFEQDVNSLTFPDAFRRR----VDLC 164 TS ++ ++N ++ P+A RR +D+C Sbjct 1314 TSNFVLASTNSNTLSPPTILNPEALVRRFGFDLDIC 1349 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Porcine enterovirus 9] Sequence ID: O41174.3 Length: 2168 Range 1: 1198 to 1338 Score:46.2 bits(108), Expect:2e-06, Method:Compositional matrix adjust., Identities:35/157(22%), Positives:67/157(42%), Gaps:16/157(10%) Query 17 FGNKPRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEF 76 F +K R +P+ + + G +G GKS LA + L + +Y + + Sbjct 1198 FKSKQRIEPVCLLIHGTAGTGKS-----LATSIIGRKLAEYEH-----SEVYAIPPDSDH 1247 Query 77 WDNYQGQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKV 136 +D YQ Q +V DD Q D + + + + PY + MA +E+K FTS Sbjct 1248 FDGYQQQAVVVMDDLNQNPDGK-----DMVAFCQMVSTVPYHVPMAAIEEK-GMLFTSSY 1301 Query 137 IIMTSNVFEQDVNSLTFPDAFRRRVDLCAEVKNKDEF 173 ++ ++N +++ A RR +++ + + Sbjct 1302 VLASTNSGSIHPPTVSNSKALSRRFAFDVDIEVSEHY 1338 >RecName: Full=Genome polyprotein; Contains: RecName: Full=NS1; AltName: Full=Protein p11; Contains: RecName: Full=NS2; AltName: Full=Protein p28; Contains: RecName: Full=NTPase; AltName: Full=NS3; AltName: Full=p35; Contains: RecName: Full=NS4; AltName: Full=Protein p32; Contains: RecName: Full=Viral genome-linked protein; Short=VPg; AltName: Full=NS5; AltName: Full=p14; Contains: RecName: Full=Protease-polymerase p70; Short=Pro-Pol; AltName: Full=NS6-7; Contains: RecName: Full=Capsid protein; Short=CP; AltName: Full=VP1; AltName: Full=p60 [Sapovirus Hu/Dresden/pJG-Sap01/DE] Sequence ID: Q672I1.1 Length: 2280 Range 1: 467 to 597 Score:46.2 bits(108), Expect:2e-06, Method:Compositional matrix adjust., Identities:48/154(31%), Positives:66/154(42%), Gaps:24/154(15%) Query 19 NKPRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWD 78 + PR P+VI L G G GK+ L + + NFS V + D Sbjct 467 DTPRRVPVVIILTGAPGIGKT--------RLAQYVGQRFGKTSNFS-------VAVDHHD 511 Query 79 NYQGQNIVCXDDFGQMRDSSSNPNPEFME-LIRTANIAPYPLHMAHLEDKRKTKFTSKVI 137 Y G + D+F DS F+E +I AN AP+PL+ +E+K + FTS + Sbjct 512 GYTGNTVCIWDEFDV--DSKG----AFVETMIGIANTAPFPLNCDRVENKGRV-FTSDYV 564 Query 138 IMTSNVFEQDVNSLTFPDAFRRRVDLCAEVKNKD 171 I TSN + AF RRV L +V D Sbjct 565 ICTSNYPTSVIPDNPRAAAFYRRV-LTVDVSAPD 597 >RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains: RecName: Full=P1A protein; Short=1A; AltName: Full=Protease cofactor; Contains: RecName: Full=Putative ATP-dependent helicase; AltName: Full=1B; AltName: Full=Membrane-binding protein; AltName: Full=NTP-binding protein; Short=NTB; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=1C-VPg; Contains: RecName: Full=Picornain 3C-like protease; Short=3C-like protease; AltName: Full=1D-PRO; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=1E-POL [Beet ringspot virus] Sequence ID: P18522.1 Length: 2264 Range 1: 770 to 906 Score:46.2 bits(108), Expect:3e-06, Method:Compositional matrix adjust., Identities:45/151(30%), Positives:64/151(42%), Gaps:16/151(10%) Query 22 RTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWDNYQ 81 R +P+ I+LFG+ GKS L+N+L + RN + F+ Y Sbjct 770 RCEPVWIYLFGQRHCGKSNFM----ATLDNALAKHF----GLPNTTAYRNCKDSFFSGYS 821 Query 82 GQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKVIIMTS 141 GQ DD ++ +P P E+I + PL+MA L DK F S II +S Sbjct 822 GQTFFHVDDLSSVK---LDP-PMEAEMINLVSCQEVPLNMADLADK-PIYFRSPFIISSS 876 Query 142 NVFEQDVNSLTFPD--AFRRRVDLCAEVKNK 170 N FE D A+R R E++ K Sbjct 877 N-FEDVPAGCGVRDIEAYRSRKACLVEMRRK 906 >RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains: RecName: Full=P1A protein; Short=1A; AltName: Full=Protease cofactor; Contains: RecName: Full=Putative ATP-dependent helicase; AltName: Full=1B; AltName: Full=Membrane-binding protein; AltName: Full=NTP-binding protein; Short=NTB; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=1C-VPg; Contains: RecName: Full=Picornain 3C-like protease; Short=3C-like protease; AltName: Full=1D-PRO; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=1E-POL [Cycas necrotic stunt virus] Sequence ID: Q8QVV0.1 Length: 2336 Range 1: 817 to 954 Score:45.4 bits(106), Expect:4e-06, Method:Compositional matrix adjust., Identities:45/151(30%), Positives:62/151(41%), Gaps:15/151(9%) Query 22 RTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWD-NY 80 R +P I++FG S GKS M + L V + RN + F+ Y Sbjct 817 RKEPTWIYIFGPSHCGKSNMM--------DHLTSEVCRYFDLPYTYIARNGQDNFFTTGY 868 Query 81 QGQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKVIIMT 140 + Q ++ DD N P ELI + + YPL MA L DK F S II T Sbjct 869 KRQTVLQIDDL----SCVENVPPIERELINLVSCSEYPLKMADLSDK-SISFQSPFIIST 923 Query 141 SNVFE-QDVNSLTFPDAFRRRVDLCAEVKNK 170 SN +T +AF R + E++ K Sbjct 924 SNQRTCLPTCGITHCEAFNNRRAVVVEMRRK 954 >RecName: Full=Genome polyprotein; Contains: RecName: Full=NS1-2; AltName: Full=NS1.2; AltName: Full=NS1/2; AltName: Full=Protein p48; Contains: RecName: Full=NS1; Contains: RecName: Full=NS2; Contains: RecName: Full=NTPase; AltName: Full=NS3; AltName: Full=p40; Contains: RecName: Full=NS4; AltName: Full=Protein p22; Contains: RecName: Full=Viral genome-linked protein; Short=VPg; AltName: Full=NS5; Contains: RecName: Full=3C-like protease; Short=3CLpro; AltName: Full=Calicivirin; AltName: Full=NS6; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=NS7 [Norovirus Hu/1968/US] Sequence ID: Q83883.1 Length: 1789 Range 1: 550 to 658 Score:45.1 bits(105), Expect:5e-06, Method:Compositional matrix adjust., Identities:34/122(28%), Positives:56/122(45%), Gaps:13/122(10%) Query 22 RTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWDNYQ 81 R +P+VI + G G GK+ LA L N E+R K + + WD Y Sbjct 550 RMRPVVIMMCGPPGIGKTKAAEHLAKRLAN-------EIRPGGKVGLVPREAVDHWDGYH 602 Query 82 GQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKVIIMTS 141 G+ ++ DD+G + + +L A+ AP L+ +E+K +F S I++T+ Sbjct 603 GEEVMLWDDYGMTKIQE-----DCNKLQAIADSAPLTLNCDRIENK-GMQFVSDAIVITT 656 Query 142 NV 143 N Sbjct 657 NA 658 >RecName: Full=Genome polyprotein; AltName: Full=p254; Contains: RecName: Full=NS1; AltName: Full=Protein p16; Contains: RecName: Full=NS2; AltName: Full=Protein p23; Contains: RecName: Full=NTPase; AltName: Full=2C-like protein; AltName: Full=NS3; AltName: Full=P2C; AltName: Full=p37; Contains: RecName: Full=Precursor p41; Contains: RecName: Full=NS4; AltName: Full=Protein p29; Contains: RecName: Full=Protein p23/2; Contains: RecName: Full=Protein p18; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=NS5; AltName: Full=VPg; AltName: Full=p13; Contains: RecName: Full=3C-like protease; Short=3CLpro; AltName: Full=Calicivirin; AltName: Full=NS6; AltName: Full=Thiol protease P3C; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=3Dpol; AltName: Full=NS7; AltName: Full=p58; Contains: RecName: Full=Capsid protein VP60 [Rabbit hemorrhagic disease virus-BS89] Sequence ID: Q89273.1 Length: 2344 Range 1: 509 to 641 Score:45.1 bits(105), Expect:5e-06, Method:Compositional matrix adjust., Identities:44/155(28%), Positives:68/155(43%), Gaps:25/155(16%) Query 19 NKPRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWD 78 K R QP+ + G G GK+ + +A DL + N + +D Sbjct 509 TKQRPQPVAVIFKGAPGIGKTYLVHRIARDLGCQHPSTI-------------NFGLDHFD 555 Query 79 NYQGQNIVCXDDFGQMRDSSSNPNPEFMEL-IRTANIAPYPLHMAHLEDKRKTKFTSKVI 137 +Y G+ + D+F D S ++EL I+ N P PL+ E+K K F SK + Sbjct 556 SYTGEEVAIADEFNTCGDGES-----WVELFIQMVNTNPCPLNCDKAENKNKV-FNSKYL 609 Query 138 IMTSNVFEQDVNSLTFP--DAFRRRVDLCAEVKNK 170 + T+N + + T P AF RRV + E +NK Sbjct 610 LCTTN--SNMILNATHPRAGAFYRRV-MIVEARNK 641 >RecName: Full=Genome polyprotein; AltName: Full=p254; Contains: RecName: Full=NS1; AltName: Full=Protein p16; Contains: RecName: Full=NS2; AltName: Full=Protein p23; Contains: RecName: Full=NTPase; AltName: Full=2C-like protein; AltName: Full=NS3; AltName: Full=P2C; AltName: Full=p37; Contains: RecName: Full=Precursor p41; Contains: RecName: Full=NS4; AltName: Full=Protein p29; Contains: RecName: Full=Protein p23/2; Contains: RecName: Full=Protein p18; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=NS5; AltName: Full=VPg; AltName: Full=p13; Contains: RecName: Full=3C-like protease; Short=3CLpro; AltName: Full=Calicivirin; AltName: Full=NS6; AltName: Full=Thiol protease P3C; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=3Dpol; AltName: Full=NS7; AltName: Full=p58; Contains: RecName: Full=Capsid protein VP60 [Rabbit hemorrhagic disease virus-FRG] Sequence ID: P27410.1 Length: 2344 Range 1: 509 to 641 Score:45.1 bits(105), Expect:5e-06, Method:Compositional matrix adjust., Identities:44/155(28%), Positives:68/155(43%), Gaps:25/155(16%) Query 19 NKPRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWD 78 K R QP+ + G G GK+ + +A DL + N + +D Sbjct 509 TKQRPQPVAVIFKGAPGIGKTYLVHRIARDLGCQHPSTI-------------NFGLDHFD 555 Query 79 NYQGQNIVCXDDFGQMRDSSSNPNPEFMEL-IRTANIAPYPLHMAHLEDKRKTKFTSKVI 137 +Y G+ + D+F D S ++EL I+ N P PL+ E+K K F SK + Sbjct 556 SYTGEEVAIADEFNTCGDGES-----WVELFIQMVNTNPCPLNCDKAENKNKV-FNSKYL 609 Query 138 IMTSNVFEQDVNSLTFP--DAFRRRVDLCAEVKNK 170 + T+N + + T P AF RRV + E +NK Sbjct 610 LCTTN--SNMILNATHPRAGAFYRRV-MIVEARNK 641 >RecName: Full=Genome polyprotein; AltName: Full=p254; Contains: RecName: Full=NS1; AltName: Full=Protein p16; Contains: RecName: Full=NS2; AltName: Full=Protein p23; Contains: RecName: Full=NTPase; AltName: Full=2C-like protein; AltName: Full=NS3; AltName: Full=P2C; AltName: Full=p37; Contains: RecName: Full=Precursor p41; Contains: RecName: Full=NS4; AltName: Full=Protein p29; Contains: RecName: Full=Protein p23/2; Contains: RecName: Full=Protein p18; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=NS5; AltName: Full=VPg; AltName: Full=p13; Contains: RecName: Full=3C-like protease; Short=3CLpro; AltName: Full=Calicivirin; AltName: Full=NS6; AltName: Full=Thiol protease P3C; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=3Dpol; AltName: Full=NS7; AltName: Full=p58; Contains: RecName: Full=Capsid protein VP60 [Rabbit hemorrhagic disease virus-AST89] Sequence ID: Q86119.2 Length: 2344 Range 1: 509 to 641 Score:45.1 bits(105), Expect:6e-06, Method:Compositional matrix adjust., Identities:44/155(28%), Positives:68/155(43%), Gaps:25/155(16%) Query 19 NKPRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWD 78 K R QP+ + G G GK+ + +A DL + N + +D Sbjct 509 TKQRPQPVAVIFKGAPGIGKTYLVHRIARDLGCQHPSTI-------------NFGLDHFD 555 Query 79 NYQGQNIVCXDDFGQMRDSSSNPNPEFMEL-IRTANIAPYPLHMAHLEDKRKTKFTSKVI 137 +Y G+ + D+F D S ++EL I+ N P PL+ E+K K F SK + Sbjct 556 SYTGEEVAIADEFNTCGDGES-----WVELFIQMVNTNPCPLNCDKAENKNKV-FNSKYL 609 Query 138 IMTSNVFEQDVNSLTFP--DAFRRRVDLCAEVKNK 170 + T+N + + T P AF RRV + E +NK Sbjct 610 LCTTN--SNMILNATHPRAGAFYRRV-MIVEARNK 641 >RecName: Full=Genome polyprotein; AltName: Full=p254; Contains: RecName: Full=NS1; AltName: Full=Protein p16; Contains: RecName: Full=NS2; AltName: Full=Protein p23; Contains: RecName: Full=NTPase; AltName: Full=2C-like protein; AltName: Full=NS3; AltName: Full=P2C; AltName: Full=p37; Contains: RecName: Full=Precursor p41; Contains: RecName: Full=NS4; AltName: Full=Protein p29; Contains: RecName: Full=Protein p23/2; Contains: RecName: Full=Protein p18; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=NS5; AltName: Full=VPg; AltName: Full=p13; Contains: RecName: Full=3C-like protease; Short=3CLpro; AltName: Full=Calicivirin; AltName: Full=NS6; AltName: Full=Thiol protease P3C; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=3Dpol; AltName: Full=NS7; AltName: Full=p58; Contains: RecName: Full=Capsid protein VP60 [Rabbit hemorrhagic disease virus-SD] Sequence ID: Q86117.1 Length: 2344 Range 1: 509 to 641 Score:45.1 bits(105), Expect:6e-06, Method:Compositional matrix adjust., Identities:44/155(28%), Positives:68/155(43%), Gaps:25/155(16%) Query 19 NKPRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWD 78 K R QP+ + G G GK+ + +A DL + N + +D Sbjct 509 TKQRPQPVAVIFKGAPGIGKTYLVHRIARDLGCQHPSTI-------------NFGLDHFD 555 Query 79 NYQGQNIVCXDDFGQMRDSSSNPNPEFMEL-IRTANIAPYPLHMAHLEDKRKTKFTSKVI 137 +Y G+ + D+F D S ++EL I+ N P PL+ E+K K F SK + Sbjct 556 SYTGEEVAIADEFNTCGDGES-----WVELFIQMVNTNPCPLNCDKAENKNKV-FNSKYL 609 Query 138 IMTSNVFEQDVNSLTFP--DAFRRRVDLCAEVKNK 170 + T+N + + T P AF RRV + E +NK Sbjct 610 LCTTN--SNMILNATHPRAGAFYRRV-MIVEARNK 641 >RecName: Full=Genome polyprotein; Contains: RecName: Full=NS1-2; AltName: Full=NS1.2; AltName: Full=NS1/2; AltName: Full=Protein p48; Contains: RecName: Full=NTPase; AltName: Full=NS3; AltName: Full=p41; Contains: RecName: Full=NS4; AltName: Full=Protein p22; Contains: RecName: Full=Viral genome-linked protein; Short=VPg; AltName: Full=NS5; Contains: RecName: Full=3C-like protease; Short=3CLpro; AltName: Full=Calicivirin; AltName: Full=NS6; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=NS7 [Southampton virus (serotype 3)] Sequence ID: Q04544.2 Length: 1788 Range 1: 551 to 659 Score:44.3 bits(103), Expect:1e-05, Method:Compositional matrix adjust., Identities:34/122(28%), Positives:56/122(45%), Gaps:13/122(10%) Query 22 RTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWDNYQ 81 R +P+VI + G G GK+ LA L N E+R K + + WD Y Sbjct 551 RMRPVVIMMCGPPGIGKTKAAEHLAKRLAN-------EIRPGGKVGLVPREAVDHWDGYH 603 Query 82 GQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKVIIMTS 141 G+ ++ DD+G + + +L A+ AP L+ +E+K +F S I++T+ Sbjct 604 GEEVMLWDDYGMTKILD-----DCNKLQAIADSAPLTLNCDRIENK-GMQFVSDAIVITT 657 Query 142 NV 143 N Sbjct 658 NA 659 >RecName: Full=Genome polyprotein; Contains: RecName: Full=NS1; AltName: Full=Protein p5.6; Contains: RecName: Full=NS2; AltName: Full=Protein p32; Contains: RecName: Full=NTPase; AltName: Full=NS3; AltName: Full=p39; Contains: RecName: Full=NS4; AltName: Full=3A-like protein p30; AltName: Full=Protein p30; Contains: RecName: Full=Viral genome-linked protein; Short=VPg; AltName: Full=NS5; AltName: Full=p13; Contains: RecName: Full=Protease-polymerase p76; Short=Pro-Pol; AltName: Full=NS6-7 [Feline calicivirus (strain Urbana)] Sequence ID: Q66914.1 Length: 1763 Range 1: 454 to 596 Score:43.1 bits(100), Expect:2e-05, Method:Compositional matrix adjust., Identities:50/163(31%), Positives:67/163(41%), Gaps:20/163(12%) Query 1 MRYLTEVFKSVDTSGAFGNKPRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEM 60 M L V S + A K R P+ L G G GK+ LA L++ Sbjct 454 MSTLDGVITSCNKRKAIAKK-RPVPVCYILTGPPGCGKTTAALALAKKLSD--------- 503 Query 61 RNFSKNIYMRNVEQEFWDNYQGQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLH 120 + + N++ + D Y G + D+F DSS + +I N AP L+ Sbjct 504 ----QEPSVINLDVDHHDTYTGNEVCIVDEF----DSSDKVDYANF-VIGMVNSAPMVLN 554 Query 121 MAHLEDKRKTKFTSKVIIMTSNVFEQDVNSLTFPDAFRRRVDL 163 LE+K K FTSK IIMTSN S AF RRV + Sbjct 555 CDMLENKGKL-FTSKYIIMTSNSETPVKPSSRRAGAFYRRVTI 596 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Protein p5.6; AltName: Full=NS1; Contains: RecName: Full=Protein p32; AltName: Full=NS2; Contains: RecName: Full=NTPase; AltName: Full=NS3; AltName: Full=p39; Contains: RecName: Full=Protein p30; AltName: Full=NS4; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=NS5; AltName: Full=VPg; AltName: Full=p13; Contains: RecName: Full=Protease-polymerase p76; Short=Pro-Pol; AltName: Full=NS6-7 [Feline calicivirus] Sequence ID: N0A3C0.1 Length: 1763 Range 1: 454 to 596 Score:43.1 bits(100), Expect:2e-05, Method:Compositional matrix adjust., Identities:50/163(31%), Positives:67/163(41%), Gaps:20/163(12%) Query 1 MRYLTEVFKSVDTSGAFGNKPRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEM 60 M L V S + A K R P+ L G G GK+ LA L++ Sbjct 454 MSTLDGVITSCNKRKAIARK-RQVPVCYILTGPPGCGKTTAAQALAKKLSD--------- 503 Query 61 RNFSKNIYMRNVEQEFWDNYQGQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLH 120 + + N++ + D Y G + D+F DSS + +I N AP L+ Sbjct 504 ----QEPSVINLDVDHHDTYTGNEVCIIDEF----DSSDKVDYANF-VIGMVNSAPMVLN 554 Query 121 MAHLEDKRKTKFTSKVIIMTSNVFEQDVNSLTFPDAFRRRVDL 163 LE+K K FTSK IIMTSN S AF RRV + Sbjct 555 CDMLENKGKL-FTSKYIIMTSNSETPVKPSSKRAGAFYRRVTI 596 >RecName: Full=Genome polyprotein; Contains: RecName: Full=NS1; AltName: Full=Protein p5.6; Contains: RecName: Full=NS2; AltName: Full=Protein p32; Contains: RecName: Full=NTPase; AltName: Full=NS3; AltName: Full=p39; Contains: RecName: Full=NS4; AltName: Full=3A-like protein p30; AltName: Full=Protein p30; Contains: RecName: Full=Viral genome-linked protein; Short=VPg; AltName: Full=NS5; AltName: Full=p13; Contains: RecName: Full=Protease-polymerase p76; Short=Pro-Pol; AltName: Full=NS6-7 [Feline calicivirus strain F9] Sequence ID: P27409.1 Length: 1763 Range 1: 454 to 596 Score:43.1 bits(100), Expect:2e-05, Method:Compositional matrix adjust., Identities:50/163(31%), Positives:67/163(41%), Gaps:20/163(12%) Query 1 MRYLTEVFKSVDTSGAFGNKPRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEM 60 M L V S + A K R P+ L G G GK+ LA L++ Sbjct 454 MSTLDGVITSCNKRKAIARK-RQVPVCYILTGPPGCGKTTAAQALAKKLSD--------- 503 Query 61 RNFSKNIYMRNVEQEFWDNYQGQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLH 120 + + N++ + D Y G + D+F DSS + +I N AP L+ Sbjct 504 ----QEPSVINLDVDHHDTYTGNEVCIIDEF----DSSDKVDYANF-VIGMVNSAPMVLN 554 Query 121 MAHLEDKRKTKFTSKVIIMTSNVFEQDVNSLTFPDAFRRRVDL 163 LE+K K FTSK IIMTSN S AF RRV + Sbjct 555 CDMLENKGKL-FTSKYIIMTSNSETPVKPSSKRAGAFYRRVTI 596 >RecName: Full=Genome polyprotein; Contains: RecName: Full=NS1; AltName: Full=Protein p5.6; Contains: RecName: Full=NS2; AltName: Full=Protein p32; Contains: RecName: Full=NTPase; AltName: Full=NS3; AltName: Full=p39; Contains: RecName: Full=NS4; AltName: Full=3A-like protein p30; AltName: Full=Protein p30; Contains: RecName: Full=Viral genome-linked protein; Short=VPg; AltName: Full=NS5; AltName: Full=p13; Contains: RecName: Full=Protease-polymerase p76; Short=Pro-Pol; AltName: Full=NS6-7 [Feline calicivirus strain Japanese F4] Sequence ID: P27408.2 Length: 1763 Range 1: 454 to 596 Score:43.1 bits(100), Expect:3e-05, Method:Compositional matrix adjust., Identities:50/163(31%), Positives:67/163(41%), Gaps:20/163(12%) Query 1 MRYLTEVFKSVDTSGAFGNKPRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEM 60 M L V S + A K R P+ L G G GK+ LA L++ Sbjct 454 MSTLDGVITSCNKRKAIARK-RQVPVCYILTGPPGCGKTTAAQALAKKLSD--------- 503 Query 61 RNFSKNIYMRNVEQEFWDNYQGQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLH 120 + + N++ + D Y G + D+F DSS + +I N AP L+ Sbjct 504 ----QEPSVINLDVDHHDTYTGNEVCIIDEF----DSSDKVDYANF-VIGMVNSAPMVLN 554 Query 121 MAHLEDKRKTKFTSKVIIMTSNVFEQDVNSLTFPDAFRRRVDL 163 LE+K K FTSK IIMTSN S AF RRV + Sbjct 555 CDMLENKGKL-FTSKYIIMTSNSETPVKPSSKRAGAFYRRVTI 596 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Echovirus 6 strain Charles] Sequence ID: Q66474.3 Length: 2191 Range 1: 1220 to 1347 Score:42.7 bits(99), Expect:4e-05, Method:Compositional matrix adjust., Identities:38/148(26%), Positives:66/148(44%), Gaps:24/148(16%) Query 17 FGNKPRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEF 76 F +K R +P+ + L G G GKS T + L L + +IY + + Sbjct 1220 FKSKCRIEPVCLLLHGSPGVGKSVATNLIGRSLAEKL----------NSSIYSLPPDPDH 1269 Query 77 WDNYQGQNIVCXDDFGQMRDSSSNPNPE----FMELIRTANIAPYPLHMAHLEDKRKTKF 132 +D Y+ Q +V DD Q NP+ + F +++ + + P MA LE+K F Sbjct 1270 FDGYKQQAVVIMDDLCQ------NPDGKDVSLFCQMVSSVDFVP---PMAALEEK-GILF 1319 Query 133 TSKVIIMTSNVFEQDVNSLTFPDAFRRR 160 TS ++ ++N + +++ A RR Sbjct 1320 TSPFVLASTNAGSINAPTVSDSRALARR 1347 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [rhinovirus A2] Sequence ID: P04936.3 Length: 2150 Range 1: 1199 to 1334 Score:42.7 bits(99), Expect:4e-05, Method:Compositional matrix adjust., Identities:40/154(26%), Positives:68/154(44%), Gaps:18/154(11%) Query 20 KPRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWDN 79 K R +P+ I + G G GKS T LA + N +IY + +++D Sbjct 1199 KKRCEPVAIVIHGPPGAGKSITTNFLAKMITN------------DSDIYSLPPDPKYFDG 1246 Query 80 YQGQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKVIIM 139 Y Q++V DD M++ + + F +++ + P MA L DK K F S+ ++ Sbjct 1247 YDQQSVVIMDDI--MQNPAGDDMTLFCQMVSSVTFIP---PMADLPDKGKA-FDSRFVLC 1300 Query 140 TSNVFEQDVNSLTFPDAFRRRVDLCAEVKNKDEF 173 ++N ++T A RR L ++ D F Sbjct 1301 STNHSLLTPPTITSLPAMNRRFFLDLDIIVHDNF 1334 >RecName: Full=Genome polyprotein; AltName: Full=p254; Contains: RecName: Full=NS1; AltName: Full=Protein p16; Contains: RecName: Full=NS2; AltName: Full=Protein p23; Contains: RecName: Full=NTPase; AltName: Full=2C-like protein; AltName: Full=NS3; AltName: Full=P2C; AltName: Full=p37; Contains: RecName: Full=Precursor p41; Contains: RecName: Full=NS4; AltName: Full=Protein p29; Contains: RecName: Full=Protein p23/2; Contains: RecName: Full=Protein p18; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=NS5; AltName: Full=VPg; AltName: Full=p13; Contains: RecName: Full=3C-like protease; Short=3CLpro; AltName: Full=Calicivirin; AltName: Full=NS6; AltName: Full=Thiol protease P3C; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=3Dpol; AltName: Full=NS7; AltName: Full=p58; Contains: RecName: Full=Capsid protein VP60 [Rabbit hemorrhagic disease virus-V351] Sequence ID: P27411.2 Length: 2344 Range 1: 500 to 641 Score:42.7 bits(99), Expect:4e-05, Method:Compositional matrix adjust., Identities:47/169(28%), Positives:73/169(43%), Gaps:30/169(17%) Query 5 TEVFKSVDTSGAFGNKPRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFS 64 T V ++TS K R QP+ + G G GK+ + +A DL + Sbjct 500 TMVLGKINTS-----KQRPQPVAVIFKGAPGIGKTYLVHRIARDLGCQHPSTI------- 547 Query 65 KNIYMRNVEQEFWDNYQGQNIVCXDDFGQMRDSSSNPNPEFMEL-IRTANIAPYPLHMAH 123 N + +D+Y G+ + D+ D S ++EL I+ N P PL+ Sbjct 548 ------NFGLDHFDSYTGEEVAIADESNTCGDGES-----WVELFIQMVNTNPCPLNCDK 596 Query 124 LEDKRKTKFTSKVIIMTSNVFEQDVNSLTFP--DAFRRRVDLCAEVKNK 170 E+K K F SK ++ T+N + + T P AF RRV + E +NK Sbjct 597 AENKNKV-FNSKYLLCTTN--SNMILNATHPRAGAFYRRV-MIVEARNK 641 >RecName: Full=Genome polyprotein; Contains: RecName: Full=NS1; AltName: Full=Protein p16; Contains: RecName: Full=NS2; AltName: Full=Protein p32; Contains: RecName: Full=NTPase; AltName: Full=NS3; AltName: Full=p39; Contains: RecName: Full=NS4; AltName: Full=3A-like protein p30; AltName: Full=Protein p30; Contains: RecName: Full=Viral genome-linked protein; Short=VPg; AltName: Full=NS5; AltName: Full=p13; Contains: RecName: Full=Protease-polymerase p76; Short=Pro-Pol; AltName: Full=NS6-7 [Vesicular exanthema of swine virus A48] Sequence ID: Q9DUN3.1 Length: 1881 Range 1: 560 to 700 Score:42.0 bits(97), Expect:6e-05, Method:Compositional matrix adjust., Identities:47/161(29%), Positives:66/161(40%), Gaps:20/161(12%) Query 1 MRYLTEVFKSVDTSGAFGNKPRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEM 60 M L +V A K RT P+ + L G G GK+ + LA L+ Sbjct 560 MSALDKVISCCTRRKAIATK-RTAPVAVILTGPPGCGKTTAAFALAKRLSQQ-------- 610 Query 61 RNFSKNIYMRNVEQEFWDNYQGQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLH 120 +I +V+ D Y G + D+F DSS + ++ N P L+ Sbjct 611 ---KPSIISLDVDHH--DTYTGNEVCIIDEF----DSSDKVDYANF-VVNMVNTNPMVLN 660 Query 121 MAHLEDKRKTKFTSKVIIMTSNVFEQDVNSLTFPDAFRRRV 161 +E+K KT FTSK +IMTSN + AF RRV Sbjct 661 CDLIENKGKT-FTSKYVIMTSNTETPVKPTSRRAGAFYRRV 700 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [rhinovirus A16] Sequence ID: Q82122.4 Length: 2153 Range 1: 1202 to 1337 Score:41.6 bits(96), Expect:8e-05, Method:Compositional matrix adjust., Identities:40/158(25%), Positives:68/158(43%), Gaps:26/158(16%) Query 20 KPRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWDN 79 K R++P+ + + G G GKS T LA + N +IY + +++D Sbjct 1202 KKRSEPVAVMIHGPPGTGKSITTSFLARMITN------------ESDIYSLPPDPKYFDG 1249 Query 80 YQGQNIVCXDDFGQMRDSSSNPNPE----FMELIRTANIAPYPLHMAHLEDKRKTKFTSK 135 Y Q++V DD Q NP E F +++ + P MA L DK K F S+ Sbjct 1250 YDNQSVVIMDDIMQ------NPGGEDMTLFCQMVSSVTFIP---PMADLPDKGK-PFDSR 1299 Query 136 VIIMTSNVFEQDVNSLTFPDAFRRRVDLCAEVKNKDEF 173 ++ ++N +++ A RR L ++ D + Sbjct 1300 FVLCSTNHSLLAPPTISSLPAMNRRFYLDLDILVHDNY 1337 >RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains: RecName: Full=P1A protein; Short=1A; AltName: Full=Protease cofactor; Contains: RecName: Full=Putative ATP-dependent helicase; AltName: Full=1B; AltName: Full=Membrane-binding protein; AltName: Full=NTP-binding protein; Short=NTB; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=1C-VPg; Contains: RecName: Full=Picornain 3C-like protease; Short=3C-like protease; AltName: Full=1D-PRO; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=1E-POL [Raspberry ringspot virus strain cherry] Sequence ID: Q6W8W4.1 Length: 2367 Range 1: 774 to 930 Score:41.2 bits(95), Expect:1e-04, Method:Compositional matrix adjust., Identities:41/171(24%), Positives:80/171(46%), Gaps:15/171(8%) Query 1 MRYLTEVFKSVDTSGAFGNKPRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEM 60 +R L + + +G+F + R P ++++G G GK+ + + +LL + Sbjct 774 LRELRTLRNDMAHAGSFEGR-RCVPFWLYIYGPPGVGKTTTMH----EFSQALLTAFEFP 828 Query 61 RNFSKNIYMRNVEQEFWDNYQGQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLH 120 S ++ ++ ++W Y+ Q +V DD G + S S E M ++ +A P Sbjct 829 ---SDSLTSKSATDKYWSLYRRQALVQIDDLGAI--SESGMEQEMMNIVSSATYNPT--- 880 Query 121 MAHLEDKRKTKFTSKVIIMTSNVFEQDVNS-LTFPDAFRRRVDLCAEVKNK 170 MA + +++ T F SK I+ TSN + ++ + AF RR + + + K Sbjct 881 MA-VANEKTTLFDSKFIVSTSNNYSAGTDAKIHDRKAFNRRRRVVIKTRGK 930 >RecName: Full=Genome polyprotein; Contains: RecName: Full=NS1; AltName: Full=Protein p5.6; Contains: RecName: Full=NS2; AltName: Full=Protein p32; Contains: RecName: Full=NTPase; AltName: Full=NS3; AltName: Full=p39; Contains: RecName: Full=NS4; AltName: Full=3A-like protein p30; AltName: Full=Protein p30; Contains: RecName: Full=Viral genome-linked protein; Short=VPg; AltName: Full=NS5; AltName: Full=p13; Contains: RecName: Full=Protease-polymerase p76; Short=Pro-Pol; AltName: Full=NS6-7 [Feline calicivirus strain CFI/68 FIV] Sequence ID: P27407.3 Length: 1762 Range 1: 454 to 594 Score:41.2 bits(95), Expect:1e-04, Method:Compositional matrix adjust., Identities:49/161(30%), Positives:65/161(40%), Gaps:20/161(12%) Query 1 MRYLTEVFKSVDTSGAFGNKPRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEM 60 M L V + A K R P+ L G G GK+ LA L++ Sbjct 454 MSTLDGVITCCNKRKAIARK-RQVPVCYILTGPPGCGKTTAAQALAKKLSD--------- 503 Query 61 RNFSKNIYMRNVEQEFWDNYQGQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLH 120 + + N++ + D Y G + D+F DSS + +I N AP L+ Sbjct 504 ----QEPSVINLDVDHHDTYTGNEVCIIDEF----DSSDKVDYANF-VIGMVNSAPMVLN 554 Query 121 MAHLEDKRKTKFTSKVIIMTSNVFEQDVNSLTFPDAFRRRV 161 LE+K K FTSK IIMTSN S AF RRV Sbjct 555 CDMLENKGKL-FTSKYIIMTSNSETPVKPSSKRAGAFYRRV 594 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Human rhinovirus 1A] Sequence ID: P23008.3 Length: 2157 Range 1: 1200 to 1310 Score:40.0 bits(92), Expect:3e-04, Method:Compositional matrix adjust., Identities:35/133(26%), Positives:59/133(44%), Gaps:26/133(19%) Query 14 SGAFGNKPRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVE 73 S + R++P+ + + G G GKS T LA + N ++Y + Sbjct 1200 SNIIKQRKRSEPVAVMIHGPPGTGKSITTNFLARMITN------------ESDVYSLPPD 1247 Query 74 QEFWDNYQGQNIVCXDDFGQMRDSSSNPNPE----FMELIRTANIAPYPLHMAHLEDKRK 129 +++D Y Q++V DD Q NP+ E F +++ + P MA L DK K Sbjct 1248 PKYFDGYDNQSVVIMDDIMQ------NPDGEDMTLFCQMVSSVTFIP---PMADLPDKGK 1298 Query 130 TKFTSKVIIMTSN 142 F S+ I+ ++N Sbjct 1299 -PFDSRFILCSTN 1310 >RecName: Full=Packaging protein 1; AltName: Full=Packaging protein IVa2 [Fowl aviadenovirus 1] Sequence ID: Q64749.1 Length: 439 Range 1: 143 to 241 Score:39.7 bits(91), Expect:3e-04, Method:Compositional matrix adjust., Identities:32/104(31%), Positives:52/104(50%), Gaps:9/104(8%) Query 24 QPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNF---SKNIYMRNVEQEFWD-N 79 QPI+ ++G +G GKS + L ++ ++LD + E F KN+ + +EQ W+ Sbjct 143 QPIIGVIYGPTGSGKSHLLRAL---ISCNMLDPIPETVIFITPEKNM-IPPIEQTSWNLQ 198 Query 80 YQGQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAH 123 N C +D G + +S PEFME+ AP L++ H Sbjct 199 LVEANFDCRED-GTIAPKTSTFRPEFMEMTYEEATAPEHLNIDH 241 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [rhinovirus A1B] Sequence ID: P12916.3 Length: 2157 Range 1: 1200 to 1352 Score:39.3 bits(90), Expect:4e-04, Method:Compositional matrix adjust., Identities:43/175(25%), Positives:74/175(42%), Gaps:30/175(17%) Query 14 SGAFGNKPRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVE 73 S + R++P+ + + G G GKS T LA + N ++Y + Sbjct 1200 SNIIKQRKRSEPVAVMIHGPPGTGKSITTNFLARMITN------------ESDVYSLPPD 1247 Query 74 QEFWDNYQGQNIVCXDDFGQMRDSSSNPNPE----FMELIRTANIAPYPLHMAHLEDKRK 129 +++D Y Q++V DD Q NP+ E F +++ + P MA L DK K Sbjct 1248 PKYFDGYDNQSVVIMDDIMQ------NPDGEDMTLFCQMVSSVTFIP---PMADLPDKGK 1298 Query 130 TKFTSKVIIMTSNVFEQDVNSLTFPDAFRRR----VDLCAEVKNKDEFTKMCWSK 180 F S+ ++ ++N +++ A RR +D+ KD K+ SK Sbjct 1299 -PFDSRFVLCSTNHSLLAPPTISSLPAMNRRFFFDLDIVVHDNYKDAQGKLNVSK 1352 >RecName: Full=Replication-associated protein; AltName: Full=ATP-dependent helicase Rep; AltName: Full=RepP [Canary circovirus] Sequence ID: Q912W1.2 Length: 290 Range 1: 144 to 264 Score:38.5 bits(88), Expect:6e-04, Method:Compositional matrix adjust., Identities:46/157(29%), Positives:70/157(44%), Gaps:45/157(28%) Query 12 DTSGAFGNKPR---TQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIY 68 D + G KPR T+ +VI G SG GKS LA ++ S F K Sbjct 144 DLALMIGQKPRDFKTEVVVI--TGPSGVGKS----RLASEMEGS---------KFYK--- 185 Query 69 MRNVEQEFWDNYQGQNIVCXDDF-GQMRDSSSNPNPEFMELIRTANIAPY--PLHMAHLE 125 ++ ++WD Y ++IV DDF G + F E++R + P+ P+ +++E Sbjct 186 ---MKGDWWDGYSNEDIVIMDDFYGWL---------PFCEMLRLMDRYPHKVPVKGSYVE 233 Query 126 DKRKTKFTSKVIIMTSNVFEQD---VNSLTFPDAFRR 159 FTSK I++TSN + + P FRR Sbjct 234 ------FTSKKIVITSNTHPESWYCPDKCYLPALFRR 264 >RecName: Full=Replication-associated protein; AltName: Full=ATP-dependent helicase Rep; AltName: Full=RepP [Columbid circovirus] Sequence ID: Q9IG45.1 Length: 317 Range 1: 216 to 287 Score:38.9 bits(89), Expect:6e-04, Method:Compositional matrix adjust., Identities:31/96(32%), Positives:44/96(45%), Gaps:27/96(28%) Query 75 EFWDNYQGQNIVCXDDF-GQMRDSSSNPNPEFMELIRTANIAPY--PLHMAHLEDKRKTK 131 E+WD Y Q +V DDF G + F EL+R + P+ P+ A +E Sbjct 216 EWWDGYDHQEVVIIDDFYGWL---------PFCELLRVTDRYPHKVPVKGAFVE------ 260 Query 132 FTSKVIIMTSNVFEQDVNSLTFPDAFRRRVDLCAEV 167 FTS+VII+TSN + PDA+ C + Sbjct 261 FTSRVIIVTSN---------SPPDAWYSEERCCVQA 287 >RecName: Full=Genome polyprotein; Contains: RecName: Full=NS1; AltName: Full=Protein p11; Contains: RecName: Full=NS2; AltName: Full=Protein p28; Contains: RecName: Full=NTPase; AltName: Full=NS3; AltName: Full=p35; Contains: RecName: Full=NS4; AltName: Full=Protein p32; Contains: RecName: Full=Viral genome-linked protein; Short=VPg; AltName: Full=NS5; AltName: Full=p14; Contains: RecName: Full=Protease-polymerase p70; Short=Pro-Pol; AltName: Full=NS6-7; Contains: RecName: Full=Capsid protein; Short=CP; AltName: Full=VP1; AltName: Full=p60 [Porcine enteric sapovirus swine/Cowden/1980/US] Sequence ID: Q9QEJ5.1 Length: 2254 Range 1: 454 to 572 Score:37.7 bits(86), Expect:0.002, Method:Compositional matrix adjust., Identities:37/141(26%), Positives:58/141(41%), Gaps:23/141(16%) Query 22 RTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWDNYQ 81 R P ++ G G GK+ + LA L E+ +F+ + + +D Y Sbjct 454 RKPPAMVVFGGPPGIGKTRLVEALAKQLG--------EVSHFTMTV-------DHYDTYT 498 Query 82 GQNIVCXDDFGQMRDSSSNPNPEFMEL-IRTANIAPYPLHMAHLEDKRKTKFTSKVIIMT 140 G + D+F + F+E I N APYPL+ E K + FTSK ++ T Sbjct 499 GNTVAIWDEF------DVDSKQAFIEATIGIVNCAPYPLNCDRPEAKGRV-FTSKYVLAT 551 Query 141 SNVFEQDVNSLTFPDAFRRRV 161 +N + AF RR+ Sbjct 552 TNCPTPVMPDHPRAMAFWRRI 572 >RecName: Full=Genome polyprotein; Contains: RecName: Full=NS1; AltName: Full=Protein p16; Contains: RecName: Full=NS2; AltName: Full=Protein p32; Contains: RecName: Full=NTPase; AltName: Full=NS3; AltName: Full=p39; Contains: RecName: Full=NS4; AltName: Full=3A-like protein p30; AltName: Full=Protein p30; Contains: RecName: Full=Viral genome-linked protein; Short=VPg; AltName: Full=NS5; AltName: Full=p13; Contains: RecName: Full=Protease-polymerase p76; Short=Pro-Pol; AltName: Full=NS6-7 [San Miguel sea lion virus 1] Sequence ID: P36286.3 Length: 1879 Range 1: 560 to 707 Score:37.4 bits(85), Expect:0.002, Method:Compositional matrix adjust., Identities:48/169(28%), Positives:68/169(40%), Gaps:21/169(12%) Query 1 MRYLTEVFKSVDTSGAFGNKPRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEM 60 M L V A K RT P+ + L G G GK+ + LA L+ Sbjct 560 MSALDNVISCCTRRKAIATK-RTAPVAVILTGPPGCGKTTAAFALAKRLSQQ-------- 610 Query 61 RNFSKNIYMRNVEQEFWDNYQGQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLH 120 +I +V+ D Y G + D+F DSS + ++ N P L+ Sbjct 611 ---KPSIISLDVDHH--DTYTGNEVCIIDEF----DSSDKVDYANF-VVNMVNTNPMVLN 660 Query 121 MAHLEDKRKTKFTSKVIIMTSNVFEQDVNSLTFPDAFRRRVDLCAEVKN 169 +E+K KT F SK +IM SN + AF RRV + +VKN Sbjct 661 CDLVENKGKT-FRSKYVIMKSNSETPVKPTSRRAGAFYRRV-MIVDVKN 707 >RecName: Full=Replication-associated protein; AltName: Full=ATP-dependent helicase Rep; AltName: Full=RepP [Beak and feather disease virus] Sequence ID: Q9YUD3.1 Length: 289 Range 1: 189 to 244 Score:37.0 bits(84), Expect:0.002, Method:Compositional matrix adjust., Identities:25/71(35%), Positives:38/71(53%), Gaps:18/71(25%) Query 75 EFWDNYQGQNIVCXDDF-GQMRDSSSNPNPEFMELIRTANIAPY--PLHMAHLEDKRKTK 131 E+WD Y G+++V DDF G + + E++R + P+ P+ A +E Sbjct 189 EWWDGYDGEDVVVLDDFYGWL---------PYCEMLRLCDRYPHKVPVKGAFVE------ 233 Query 132 FTSKVIIMTSN 142 FTSK II+TSN Sbjct 234 FTSKRIIITSN 244 >RecName: Full=Replication-associated protein; AltName: Full=ATP-dependent helicase Rep; AltName: Full=RepP [Goose circovirus] Sequence ID: Q91EK3.1 Length: 293 Range 1: 193 to 269 Score:34.7 bits(78), Expect:0.011, Method:Compositional matrix adjust., Identities:27/90(30%), Positives:45/90(50%), Gaps:15/90(16%) Query 75 EFWDNYQGQNIVCXDDF-GQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFT 133 ++WD Y GQ++V DDF G + + +L+R + YPL + + T+F Sbjct 193 KWWDGYNGQDVVVMDDFYGWL---------PYDDLLRICD--RYPLRVEY--KGGMTQFV 239 Query 134 SKVIIMTSNVFEQDVNSLTFP-DAFRRRVD 162 +K +I+TSN +D F A RR++ Sbjct 240 AKTLIITSNREPRDWYKCEFDVSALYRRIN 269 >RecName: Full=Replication-associated protein; Short=Rep; AltName: Full=ATP-dependent helicase Rep; AltName: Full=RepP [Cyclovirus PK5510] Sequence ID: D4N3P2.1 Length: 280 Range 1: 161 to 275 Score:33.5 bits(75), Expect:0.033, Method:Compositional matrix adjust., Identities:42/144(29%), Positives:63/144(43%), Gaps:36/144(25%) Query 27 VIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWDNYQGQNIV 86 V + G G GKS A L + L D IY + +WD Y+ Q+ V Sbjct 161 VRYYHGPPGSGKSRRALEEATALASDLND-----------IYYK-PRGTWWDGYKQQSCV 208 Query 87 CXDDF-GQMRDSSSNPNPEFMELIRTANIAPYPLHM-AHLEDKRKTKFTSKVIIMTSNVF 144 DDF G ++ + E+++ + PY + + E+ FTSK I +TSN+ Sbjct 209 IIDDFYGWIK---------YDEMLKICDRYPYKVQIKGGFEE-----FTSKYIWITSNI- 253 Query 145 EQDVNSL-TFPD----AFRRRVDL 163 D N L F D AF RR+++ Sbjct 254 --DTNLLYKFNDYNDTAFVRRIEI 275 >RecName: Full=Replication-associated protein; Short=Rep; AltName: Full=ATP-dependent helicase Rep; AltName: Full=RepP [Porcine circovirus 1] Sequence ID: Q805H4.1 Length: 312 Range 1: 182 to 275 Score:33.1 bits(74), Expect:0.039, Method:Compositional matrix adjust., Identities:32/108(30%), Positives:54/108(50%), Gaps:21/108(19%) Query 61 RNFSK--NIYMRNVEQEFWDNYQGQNIVCXDDF-GQMRDSSSNPNPEFMELIRTANIAPY 117 RNF++ + Y + ++WD Y G+ +V DDF G + + +L+R + Y Sbjct 182 RNFAEPSDTYWKPSRNKWWDGYHGEEVVVLDDFYGWL---------PWDDLLRLCDR--Y 230 Query 118 PLHMAHLEDKRKT-KFTSKVIIMTSNVFEQD-VNSLTFP--DAFRRRV 161 PL +E K T F ++ I++TSN Q+ +S P +A RR+ Sbjct 231 PL---TVETKGGTVPFLARSILITSNQAPQEWYSSTAVPAVEALYRRI 275 >RecName: Full=Replication polyprotein; Includes: RecName: Full=Membrane protein; Includes: RecName: Full=Helicase; Includes: RecName: Full=Protease; Includes: RecName: Full=RNA-directed RNA polymerase [Drosophila melanogaster Nora virus] Sequence ID: Q27YG9.2 Length: 2104 Range 1: 343 to 422 Score:33.5 bits(75), Expect:0.046, Method:Compositional matrix adjust., Identities:23/80(29%), Positives:38/80(47%), Gaps:2/80(2%) Query 19 NKPRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVD-EMRNFSK-NIYMRNVEQEF 76 N+ R +P+ + + GE GK+ + L+ + + ++ D RN +K + R EF Sbjct 343 NQTRVKPVGVTIQGEKQIGKTNLVAILSRKICEYVQEHGDISFRNATKWTTWSRQCRDEF 402 Query 77 WDNYQGQNIVCXDDFGQMRD 96 Y GQ I DD Q +D Sbjct 403 DTGYTGQEITYVDDAFQQKD 422