SUBMISSION PARAMETERS
Title	Sequence	Database	swissprot
Sequence length	326	Sequence type	p
Program	NCBI-blastp	Version	2.2.2 [Dec-14-2001]
Matrix	BLOSUM62	Gap extension penalty	1
Open gap penalty	10

Alignment	DB:ID	Source	Length	Score	Identity%	Positives%	E()
1	SW:RBSR_BACSU	Ribose operon repressor.	326	1643	100	100	e-165
2	SW:RBSR_BACHD	Ribose operon repressor.	331	698	42	63	6e-66
3	SW:RBSR_LACLA	Ribose operon repressor.	327	663	41	64	3e-62
4	SW:REGA_CLOSA	HTH-type transcriptional regulator regA.	332	434	34	56	4e-38
5	SW:SCRR_PEDPE	Sucrose operon repressor (Scr operon regulatory protein).	326	428	33	51	2e-37
6	SW:CCPA_BACSU	Catabolite control protein A (Glucose-resistance amylase regulator).	334	426	31	51	3e-37
7	SW:RBSR_PASMU	Ribose operon repressor.	337	404	30	51	6e-35
8	SW:REGA_CLOAB	HTH-type transcriptional regulator regA.	334	391	33	52	1e-33
9	SW:DEGA_BACSU	HTH-type transcriptional regulator degA (Degradation activator).	337	391	30	50	1e-33
10	SW:SCRR_STRMU	Sucrose operon repressor (Scr operon regulatory protein).	320	390	33	53	2e-33
11	SW:CCPA_STAXY	Probable catabolite control protein A.	329	389	32	49	2e-33
12	SW:CCPA_BACME	Glucose-resistance amylase regulator (Catabolite control protein).	332	387	31	48	4e-33
13	SW:CCPA_STAES	Probable catabolite control protein A.	329	378	32	48	3e-32
14	SW:CCPA_STAEQ	Probable catabolite control protein A.	329	378	32	48	3e-32
15	SW:CYTR_SHIFL	HTH-type transcriptional repressor cytR.	341	377	31	49	4e-32
16	SW:CYTR_ECOLI	HTH-type transcriptional repressor cytR.	341	377	31	49	4e-32
17	SW:CYTR_ECOL6	HTH-type transcriptional repressor cytR.	341	377	31	49	4e-32
18	SW:CYTR_ECO57	HTH-type transcriptional repressor cytR.	341	377	31	49	4e-32
19	SW:RBSR_SHIFL	Ribose operon repressor.	329	370	30	48	2e-31
20	SW:RBSR_ECOLI	Ribose operon repressor.	329	370	30	48	2e-31
21	SW:RBSR_ECOL6	Ribose operon repressor.	329	370	30	48	2e-31
22	SW:RBSR_ECO57	Ribose operon repressor.	329	370	30	48	2e-31
23	SW:RBSR_HAEIN	Ribose operon repressor.	331	367	31	48	5e-31
24	SW:CCPA_STAAW	Probable catabolite control protein A.	329	362	30	48	2e-30
25	SW:CCPA_STAAS	Probable catabolite control protein A.	329	362	30	48	2e-30
26	SW:CCPA_STAAN	Probable catabolite control protein A.	329	362	30	48	2e-30
27	SW:CCPA_STAAM	Probable catabolite control protein A.	329	362	30	48	2e-30
28	SW:CCPA_STAAC	Probable catabolite control protein A.	329	362	30	48	2e-30
29	SW:CCPA_STAAR	Probable catabolite control protein A.	329	359	30	49	3e-30
30	SW:PURR_SHIFL	HTH-type transcriptional repressor purR (Purine nucleotide synthesis repressor).	340	358	30	48	4e-30
31	SW:PURR_ECOLI	HTH-type transcriptional repressor purR (Purine nucleotide synthesis repressor).	340	358	30	48	4e-30
32	SW:PURR_ECO57	HTH-type transcriptional repressor purR (Purine nucleotide synthesis repressor).	340	358	30	48	4e-30
33	SW:PURR_SALTY	HTH-type transcriptional repressor purR (Purine nucleotide synthesis repressor).	340	357	29	47	5e-30
34	SW:ENDR_PAEPO	Probable HTH-type transcriptional regulator endR.	340	356	29	51	7e-30
35	SW:CCPA_STRMU	Probable catabolite control protein A.	333	355	32	52	9e-30
36	SW:SACR_LACLA	Sucrose operon repressor (Scr operon regulatory protein).	318	353	31	51	1e-29
37	SW:PURR_PASMU	HTH-type transcriptional repressor purR (Purine nucleotide synthesis repressor).	334	353	29	47	1e-29
38	SW:PEPR_LACDL	HTH-type transcriptional regulator pepR1.	333	351	29	49	2e-29
39	SW:PURR_HAEIN	HTH-type transcriptional repressor purR (Purine nucleotide synthesis repressor).	336	347	30	48	6e-29
40	SW:GALR_SALTY	HTH-type transcriptional regulator galR (Galactose operon repressor).	342	341	30	48	3e-28
41	SW:GALR_ECOLI	HTH-type transcriptional regulator galR (Galactose operon repressor).	343	340	29	48	3e-28
42	SW:NTDR_BACSU	NTD biosynthesis operon regulator ntdR.	329	323	27	49	2e-26
43	SW:REG1_STRLI	HTH-type transcriptional regulator reg1.	345	322	28	45	3e-26
44	SW:KDGR_BACSU	HTH-type transcriptional regulator kdgR (Kdg operon repressor).	339	321	29	47	3e-26
45	SW:GALR_HAEIN	HTH-type transcriptional regulator galR (Galactose operon repressor).	332	320	29	46	4e-26
46	SW:MALR_STRCO	HTH-type transcriptional regulator malR (Maltose operon transcriptional repressor).	344	318	29	46	7e-26
47	SW:Y4158_STRCO	Putative HTH-type transcriptional regulator SCO4158.	340	317	30	47	9e-26
48	SW:CELR_THEFU	HTH-type transcriptional regulator celR.	340	312	29	46	3e-25
49	SW:GALS_SALTY	HTH-type transcriptional regulator galS (Mgl repressor and galactose ultrainduction factor).	340	301	29	47	4e-24
50	SW:YAML_STRLM	Putative HTH-type transcriptional regulator in aml 5'region (ORF-S1).	351	299	30	46	7e-24