TBLASTN 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ASPG2_ECOLI (348 letters) Database: 3g 1077 sequences; 12,619,654 total letters Searching...done Score E Sequences producing significant alignments: (bits) Value embl|AE004563|AE004563 Pseudomonas aeruginosa PAO1, section 124 ... 272 1e-73 embl|AE004274|AE004274 Vibrio cholerae O1 biovar eltor str. N169... 80 9e-16 embl|AE004651|AE004651 Pseudomonas aeruginosa PAO1, section 212 ... 48 4e-06 embl|AE004484|AE004484 Pseudomonas aeruginosa PAO1, section 45 o... 31 0.62 embl|AE004608|AE004608 Pseudomonas aeruginosa PAO1, section 169 ... 29 1.8 embl|AE004673|AE004673 Pseudomonas aeruginosa PAO1, section 234 ... 29 2.3 embl|AE004946|AE004946 Pseudomonas aeruginosa PAO1, section 507 ... 27 8.9 >embl|AE004563|AE004563 Pseudomonas aeruginosa PAO1, section 124 of 529 of the complete genome. Length = 9937 Score = 272 bits (695), Expect = 1e-73 Identities = 144/311 (46%), Positives = 197/311 (63%), Gaps = 3/311 (0%) Frame = -3 Query: 41 SATKSNYTVGKVGVENLVNAVPQLKDIANVKGEQVVNIGSQDMNDNVWLTLAKKIN--TD 98 +A + YT KV V+ L+ +VPQLKDIANV+GEQV I S+ + L L K + D Sbjct: 4436 AANSATYTAAKVPVDQLLASVPQLKDIANVRGEQVFQIASESFTNENLLELGKTVAKLAD 4257 Query: 99 CDKTDGFVITHGTDTMEETAYFLDLTVKCDKPVVMVGAMRPSTSMSADGPFNLYNAVVTA 158 D DG VITHGTDT+EETAYFL L +KP+V+VG+MRP T+MSADG NLYNAV A Sbjct: 4256 SDDVDGIVITHGTDTLEETAYFLTLVEHTEKPIVVVGSMRPGTAMSADGMLNLYNAVAVA 4077 Query: 159 ADKASANRGVLVVMNDTVLDGRDVTKTNTTDVATFKSVNYGPLGYIHNGKIDYQRTPARK 218 DK++ +GVL+ MND +L GRD +K FKS +GPLG + GK + R P ++ Sbjct: 4076 GDKSARGKGVLITMNDEILSGRDASKMVNIKTEAFKS-PWGPLGMVVEGKSYWFRAPVKR 3900 Query: 219 HTSDTPFDVSKLNELPKVGIVYNYANASDLPAKALVDAGYDGIVSAGVGNGNLYKSVFDT 278 HT ++ FD+ +++ L V I Y+Y N SD KAL AG I+ AG GNG++ V T Sbjct: 3899 HTVNSEFDIKQISALAPVEIAYSYGNVSDTAYKALAQAGAKAIIHAGTGNGSVPARVVPT 3720 Query: 279 LATAAKTGTAVVRSSRVPTGA-TTQDAEVDDAKYGFVASGTLNPQKARVLLQLALTQTKD 337 L K G ++RSS V G ++AE D K ++ + LNPQKAR+L +A+T+T+D Sbjct: 3719 LQELRKQGVQIIRSSHVNAGGFVLRNAEQPDDKNDWIVAHDLNPQKARILAAVAMTKTQD 3540 Query: 338 PQQIQQIFNQY 348 +++Q+IF +Y Sbjct: 3539 SKELQRIFWEY 3507 >embl|AE004274|AE004274 Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, section 182 of 251 of the complete chromosome. Length = 10732 Score = 80.1 bits (196), Expect = 9e-16 Identities = 76/282 (26%), Positives = 120/282 (42%), Gaps = 14/282 (4%) Frame = +2 Query: 80 SQDMNDNVWLTLAKKINTDCDKTDGFVITHGTDTMEETAYFLDLTVK-CDKPVVMVGAMR 138 S DM W +A I + DK DGFVI HGTDTM TA L + KPV++ G+ Sbjct: 5399 SSDMTPADWQLIADDIAANYDKYDGFVILHGTDTMAYTASALSFMFENLGKPVIVTGSQI 5578 Query: 139 PSTSMSADGPFNLYNAVVTAADKASANRGVLVVMNDTVLDGRDVTKTNTTDVATFKSVNY 198 P + +DG NL NA+ AA+ V + N+ ++ G K++ + F S N Sbjct: 5579 PLADLRSDGQANLLNALHVAANYPI--NEVTLFFNNRLMRGNRSRKSHADGFSAFSSPNL 5752 Query: 199 GPL-------GYIHNGKIDYQRTPARKHTSDTPFDVSKLNELPKVGIVYNYANASDL-PA 250 PL N K+D + + K TP + + P GI + + L P Sbjct: 5753 PPLLEAGINIELSTNVKVDEKPSGEFKVNPITPQPIGVITMYP--GISHEVIRNTLLQPV 5926 Query: 251 KALVDAGYDGIVSAGVGNGNLYKSVFDTLATAAKTGTAVVR-----SSRVPTGATTQDAE 305 A++ +++ GVGN + L A++ G VV + +V G Sbjct: 5927 NAMI------LLTFGVGNAPQNPELLAQLKAASERGVIVVNLTQCLAGKVNMGGYATGCA 6088 Query: 306 VDDAKYGFVASGTLNPQKARVLLQLALTQTKDPQQIQQIFNQ 347 + DA G ++ + P+ A L L+Q ++++ Q Sbjct: 6089 LADA--GVISGYDMTPEAALAKLHYLLSQNLSYEEVKAKMQQ 6208 >embl|AE004651|AE004651 Pseudomonas aeruginosa PAO1, section 212 of 529 of the complete genome. Length = 10728 Score = 48.1 bits (113), Expect = 4e-06 Identities = 46/198 (23%), Positives = 80/198 (40%), Gaps = 6/198 (3%) Frame = +1 Query: 78 IGSQDMNDNVWLTLAKKINTDCDKT-DGFVITHGTDTMEETAYFLD-LTVKCDKPVVMVG 135 + S +M WL + I D DG ++ HGTDT+ +A L L + PV++ G Sbjct: 2803 LDSANMTQGNWLAMRDAIVAALDAGHDGVLLLHGTDTLAYSAAALSFLLLDLPIPVLLTG 2982 Query: 136 AMRPSTSMSADGPFNLYNAVVTAADKASANRGVLVVMNDTVLDGRDVTKTNTTDVATFKS 195 +M P+ + +D NL A+ + + RGV V ND +L G V+K + F Sbjct: 2983 SMLPAGAPGSDAWDNLVGALRVLQEGHA--RGVQVYFNDALLHGARVSKLRSDAFDAFAE 3156 Query: 196 VNYGPLGYIHNGKIDYQRTPARKHTSDTPFDVSKLNELPK----VGIVYNYANASDLPAK 251 + P +H P + P+ + ++ Y + Sbjct: 3157 L------------------PRPRHAEHAPVPAALGYRQPRREVNLAVLPLYPGLRAAHLR 3282 Query: 252 ALVDAGYDGIVSAGVGNG 269 L+D+G + ++ G+G Sbjct: 3283 GLLDSGVEALLLECYGSG 3336 >embl|AE004484|AE004484 Pseudomonas aeruginosa PAO1, section 45 of 529 of the complete genome. Length = 11863 Score = 30.8 bits (68), Expect = 0.62 Identities = 20/59 (33%), Positives = 26/59 (44%) Frame = -1 Query: 262 VSAGVGNGNLYKSVFDTLATAAKTGTAVVRSSRVPTGATTQDAEVDDAKYGFVASGTLN 320 V A VGN N + FD+ G + R S V + TQ +DD +Y S T N Sbjct: 10990 VKAEVGNYNHKQVSFDSTGPLDDEGRFLYRVSGVVRDSNTQVDHIDDKRYNIAPSLTWN 10814 >embl|AE004608|AE004608 Pseudomonas aeruginosa PAO1, section 169 of 529 of the complete genome. Length = 13121 Score = 29.3 bits (64), Expect = 1.8 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 5/67 (7%) Frame = -1 Query: 267 GNGNLYKSVFDTLATAAKTGTAVVRSSRVPTG--ATTQDAEV---DDAKYGFVASGTLNP 321 GNG + ++ LAT+ T + R++ T A+T+ A V K G AS T +P Sbjct: 12095 GNGQFWLPMYSRLATSTPTSSRTSRTTHCSTDSPASTKPARVL*TPGTKRGERASNTSSP 11916 Query: 322 QKARVLL 328 + R ++ Sbjct: 11915 RVTRTIM 11895 >embl|AE004673|AE004673 Pseudomonas aeruginosa PAO1, section 234 of 529 of the complete genome. Length = 24397 Score = 28.9 bits (63), Expect = 2.3 Identities = 18/49 (36%), Positives = 27/49 (55%) Frame = -3 Query: 251 KALVDAGYDGIVSAGVGNGNLYKSVFDTLATAAKTGTAVVRSSRVPTGA 299 +A DAG+ G V+AGV G + L TA K G + ++++PT A Sbjct: 8024 QAYEDAGWQGSVTAGVEGGRFAAELVGVL-TAVKGGAQI--TAKLPTAA 7887 Score = 26.9 bits (58), Expect = 8.9 Identities = 24/85 (28%), Positives = 32/85 (37%), Gaps = 5/85 (5%) Frame = -3 Query: 256 AGYDGIVSAGVGNGNLYKSVFDTLATA-----AKTGTAVVRSSRVPTGATTQDAEVDDAK 310 AG +V AG G + TA A G ++R G +D DA Sbjct: 9116 AGSTAMVQAGTAVGTAAAGWANAAGTAVAMGMASNGAISTINNRGNLGDVVKDVTSSDAL 8937 Query: 311 YGFVASGTLNPQKARVLLQLALTQT 335 G+V +GT A V + TQT Sbjct: 8936 RGYVVAGTTAGLTAGVYDKWTSTQT 8862 >embl|AE004946|AE004946 Pseudomonas aeruginosa PAO1, section 507 of 529 of the complete genome. Length = 13075 Score = 26.9 bits (58), Expect = 8.9 Identities = 17/62 (27%), Positives = 27/62 (43%) Frame = +3 Query: 110 GTDTMEETAYFLDLTVKCDKPVVMVGAMRPSTSMSADGPFNLYNAVVTAADKASANRGVL 169 G +T+++ + L L + V +GA+RP +G VV AD R L Sbjct: 11004 GLETLQDILFHLPLRYQDRTRVTAIGALRPGADAVVEG-------VVAGADVVMGRRRSL 11162 Query: 170 VV 171 +V Sbjct: 11163 LV 11168 Database: 3g Posted date: Oct 2, 2006 11:55 PM Number of letters in database: 12,619,654 Number of sequences in database: 1077 Lambda K H 0.314 0.130 0.366 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,642,846 Number of Sequences: 1077 Number of extensions: 42518 Number of successful extensions: 155 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 50 Number of HSP's successfully gapped in prelim test: 7 Number of HSP's that attempted gapping in prelim test: 100 Number of HSP's gapped (non-prelim): 60 length of query: 348 length of database: 4,206,551 effective HSP length: 95 effective length of query: 253 effective length of database: 4,104,236 effective search space: 1038371708 effective search space used: 1038371708 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 58 (26.9 bits)