# fasta34 u00096.fasta bs_genome.fasta 6 FASTA searches a protein or DNA sequence data bank version 3.4t25 Nov 12, 2004 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 U00096, 76 nt vs bs_genome.fasta library 22592 residues in 1 sequences Altschul/Gish params: n0: 76 Lambda: 0.192 K: 0.177 H: 0.360 FASTA (3.47 Mar 2004) function [optimized, +5/-4 matrix (5:-4)] ktup: 6 join: 45, opt: 30, open/ext: -12/-4, width: 16 The best scores are: opt bits E(1) AL009126_GR|AL009126_GR Bacillus subtilis (str (4214630) [f] 82 26.0 0.025 AL009126_GR|AL009126_GR Bacillus subtilis (str (4214630) [f] 51 17.5 2 AL009126_GR|AL009126_GR Bacillus subtilis (str (4214630) [r] 50 17.2 2 AL009126_GR|AL009126_GR Bacillus subtilis (str (4214630) [r] 47 16.3 2 >>AL009126_GR|AL009126_GR Bacillus subtilis (strain 168) (4214630 nt) initn: 71 init1: 71 opt: 82 Z-score: 79.7 bits: 26.0 E(): 0.025 banded Smith-Waterman score: 82; 60.714% identity (60.714% similar) in 56 nt overlap (8-63:11557-11612) 10 20 30 U00096 GCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAA :::::::: :: ::::: : :: : AL0091 TCAGGCCCACCATCTTATATAACGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCA 11530 11540 11550 11560 11570 11580 40 50 60 70 U00096 ATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCA : ::: :::::::: ::: AL0091 CGCAGGAGGTCAGCGGTTCGATCCCGCTAGGCTCCACCAACGTGTTCTTTGAAAACTAGA 11590 11600 11610 11620 11630 11640 >>AL009126_GR|AL009126_GR Bacillus subtilis (strain 168) (4214630 nt) initn: 45 init1: 45 opt: 51 Z-score: 33.3 bits: 17.5 E(): 2 banded Smith-Waterman score: 51; 71.429% identity (71.429% similar) in 21 nt overlap (1-21:5095-5115) 10 20 30 U00096 GCCCGGATAGCTCAGTCGGTAGAGCAGGGG ::: : :: ::::::::: AL0091 AAGACAACAGTATCACGGTTGTAGATAATGGCCGCGGTATTCCAGTCGGTATTCATGAAA 5070 5080 5090 5100 5110 5120 40 50 60 70 U00096 ATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCA AL0091 AAATGGGCCGTCCTGCGGTAGAAGTCATTATGACGGTGCTTCATGCCGGAGGAAAATTTG 5130 5140 5150 5160 5170 5180 >>AL009126_GR|AL009126_GR Bacillus subtilis (strain 168) (4214630 nt) rev-comp initn: 75 init1: 50 opt: 50 Z-score: 31.8 bits: 17.2 E(): 2 banded Smith-Waterman score: 50; 100.000% identity (100.000% similar) in 10 nt overlap (39-30:22542-22551) 70 60 50 40 30 20 U0009- CGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCTACCGACTGAGC :::::::::: AL0091 ATGAATAACTGAAGCAATTTGATCTACAATATTTTCAATCGAGTTTTCGTCGTTCAGAAG 22520 22530 22540 22550 22560 22570 10 U0009- TATCCGGGC AL0091 ATCATAATCTTCAATGCGAAG 22580 22590 >>AL009126_GR|AL009126_GR Bacillus subtilis (strain 168) (4214630 nt) rev-comp initn: 45 init1: 45 opt: 47 Z-score: 27.3 bits: 16.3 E(): 2 banded Smith-Waterman score: 47; 84.615% identity (84.615% similar) in 13 nt overlap (27-15:7963-7975) 50 40 30 20 10 U0009- CGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCTACCGACTGAGCTATCCGGGC ::::::::: :: AL0091 ATGTTATCTTAAACAATCTGTACAAACAAACTGCTCTACAAACATCTTTTGGCATCAACC 7940 7950 7960 7970 7980 7990 AL0091 TGCTTGCGCTTGTTGATGGCCAGCCGAAAGTTTTAACTCTTAAGCAATGCCTGGAGCATT 8000 8010 8020 8030 8040 8050 76 residues in 1 query sequences 22592 residues in 1 library sequences Scomplib [34t25] start: Sun Oct 1 23:33:33 2006 done: Sun Oct 1 23:34:22 2006 Total Scan time: 0.030 Total Display time: 0.000 Function used was FASTA [version 3.4t25 Nov 12, 2004]