TBLASTN 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ASPG2_ECOLI 
         (348 letters)

Database: pm 
           204 sequences; 2,269,587 total letters

Searching.done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

embl|AE006188|AE006188 Pasteurella multocida subsp. multocida st...    25   4.9  
embl|AE006163|AE006163 Pasteurella multocida subsp. multocida st...    25   4.9  
embl|AE006136|AE006136 Pasteurella multocida subsp. multocida st...    25   8.3  

>embl|AE006188|AE006188 Pasteurella multocida subsp. multocida str.
            Pm70 section 155 of 204 of the complete genome.
          Length = 11236

 Score = 25.4 bits (54), Expect = 4.9
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -3

Query: 320  NPQKARVLLQLALTQTKDPQQIQQIFNQ 347
            N Q AR+ L +ALTQ ++ +  +  FNQ
Sbjct: 4475 NLQPARLQLAIALTQNRENEAAKAQFNQ 4392


>embl|AE006163|AE006163 Pasteurella multocida subsp. multocida str.
            Pm70 section 130 of 204 of the complete genome.
          Length = 10823

 Score = 25.4 bits (54), Expect = 4.9
 Identities = 19/65 (29%), Positives = 32/65 (49%)
 Frame = -2

Query: 271  LYKSVFDTLATAAKTGTAVVRSSRVPTGATTQDAEVDDAKYGFVASGTLNPQKARVLLQL 330
            L +  F  +ATA       V SSR  + AT+   E+ ++    V S +L+   +   L +
Sbjct: 7489 LVRPCFSIIATAL---ACCVLSSRNFSRATSGSMELSESLSSVVLSSSLSSSSSSSSLSV 7319

Query: 331  ALTQT 335
            ALT++
Sbjct: 7318 ALTES 7304


>embl|AE006136|AE006136 Pasteurella multocida subsp. multocida str.
            Pm70 section 103 of 204 of the complete genome.
          Length = 11061

 Score = 24.6 bits (52), Expect = 8.3
 Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 10/88 (11%)
 Frame = -3

Query: 229  KLNELPKVGIVYNYANASDLPAKALVDAGYDGIVSAGV----GNGNLYKSVFDTLATAAK 284
            K N +P   +  +  + S++  +A    G D +V   V    G+ N+   + DT+     
Sbjct: 4474 KFNPIPVNRMPQHPTSVSEVNPEAWAALGIDAVVVGHVTPANGSFNIAYQLVDTIGATGT 4295

Query: 285  TGTAVVRSSRVPT------GATTQDAEV 306
             GT + ++    T      GA T   EV
Sbjct: 4294 AGTVLTQNQYTVTAKWLRYGAHTVSDEV 4211


  Database: pm
    Posted date:  Oct 2, 2006 11:52 PM
  Number of letters in database: 2,269,587
  Number of sequences in database:  204
  
Lambda     K      H
   0.314    0.130    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 632,286
Number of Sequences: 204
Number of extensions: 7304
Number of successful extensions: 23
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 10
length of query: 348
length of database: 756,529
effective HSP length: 83
effective length of query: 265
effective length of database: 739,597
effective search space: 195993205
effective search space used: 195993205
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (24.3 bits)