########################################
# Program: needle
# Rundate: Sun Mar 25 2007 14:01:41
# Commandline: needle
#    [-asequence] SYSC_HUMAN_1.fasta
#    [-bsequence] SYSM_HUMAN_1.fasta
#    -gapopen 10
#    -gapextend 0.5
#    [-outfile] stdout
# Align_format: srspair
# Report_file: stdout
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: SYSC_HUMAN
# 2: SYSM_HUMAN
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 186
# Identity:      50/186 (26.9%)
# Similarity:    90/186 (48.4%)
# Gaps:          12/186 ( 6.5%)
# Score: 230.5
# 
#
#=======================================

SYSC_HUMAN         1 FLEQALIQYALRTLGSRGYIPIYTPFFMRKEVMQEVAQLSQFD-EELYKV     49
                      |:..|:.:....|..||:.|:..|..:|..|.:........: .::|.:
SYSM_HUMAN         1 -LQHGLVNFTFNKLLRRGFTPMTVPDLLRGAVFEGCGMTPNANPSQIYNI     49

SYSC_HUMAN        50 IGKGSEKSDDNSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTC     99
                             |...:.:..|..|:|..:|....|..:...|||::....|||
SYSM_HUMAN        50 --------DPARFKDLNLAGTAEVGLAGYFMDHTVAFRDLPVRMVCSSTC     91

SYSC_HUMAN       100 FRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMITTAEE    149
                     :|.|..: |::.||::|||.|.|:|.|..:.|...:|.::.||.::...|
SYSM_HUMAN        92 YRAETNT-GQEPRGLYRVHHFTKVEMFGVTGPGLEQSSQLLEEFLSLQME    140

SYSC_HUMAN       150 FYQSLGIPYHIVNIVSGSLNHAASKKLDLEAWFPG-    184
                     ....||:.:.::::.:..|...|.:|.|:|||.|| 
SYSM_HUMAN       141 ILTELGLHFRVLDMPTQELGLPAYRKFDIEAWMPGR    176


#---------------------------------------
#---------------------------------------
########################################
# Program: needle
# Rundate: Sun Mar 25 2007 14:01:41
# Commandline: needle
#    [-asequence] SYSC_HUMAN_1.fasta
#    [-bsequence] SYS_ECOLI_1.fasta
#    -gapopen 10
#    -gapextend 0.5
#    [-outfile] stdout
# Align_format: srspair
# Report_file: stdout
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: SYSC_HUMAN
# 2: SYS_ECOLI
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 186
# Identity:      67/186 (36.0%)
# Similarity:    98/186 (52.7%)
# Gaps:           9/186 ( 4.8%)
# Score: 294.5
# 
#
#=======================================

SYSC_HUMAN         1 FLEQALIQYALRT-LGSRGYIPIYTPFFMRKEVMQEVAQLSQFDEELYKV     49
                      :.:||.|:.|.. ....||...|.|:.:.::.:....||.:|..:|:..
SYS_ECOLI          1 -MHRALSQFMLDLHTEQHGYSENYVPYLVNQDTLYGTGQLPKFAGDLFHT     49

SYSC_HUMAN        50 IGKGSEKSDDNSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTC     99
                      ....|::|.::|   .||.|:|.|:..|.|.|.:..:|||||....:.|
SYS_ECOLI         50 -RPLEEEADTSNY---ALIPTAEVPLTNLVRGEIIDEDDLPIKMTAHTPC     95

SYSC_HUMAN       100 FRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMITTAEE    149
                     ||.|.||:||||||:.|:|||:|:|......|.|  |....|||...||:
SYS_ECOLI         96 FRSEAGSYGRDTRGLIRMHQFDKVEMVQIVRPED--SMAALEEMTGHAEK    143

SYSC_HUMAN       150 FYQSLGIPYHIVNIVSGSLNHAASKKLDLEAWFPG-    184
                     ..|.||:||..:.:.:|.:...|.|..|||.|.|. 
SYS_ECOLI        144 VLQLLGLPYRKIILCTGDMGFGACKTYDLEVWIPAQ    179


#---------------------------------------
#---------------------------------------
########################################
# Program: needle
# Rundate: Sun Mar 25 2007 14:01:41
# Commandline: needle
#    [-asequence] SYSC_HUMAN_1.fasta
#    [-bsequence] SYS_METJA_1.fasta
#    -gapopen 10
#    -gapextend 0.5
#    [-outfile] stdout
# Align_format: srspair
# Report_file: stdout
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: SYSC_HUMAN
# 2: SYS_METJA
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 219
# Identity:      44/219 (20.1%)
# Similarity:    76/219 (34.7%)
# Gaps:          67/219 (30.6%)
# Score: 69.5
# 
#
#=======================================

SYSC_HUMAN         1 ---FLEQALIQYALRTLGSRGYIPIYTPFFMRKEVMQEVAQLSQFDEELY     47
                        .||:.:::..::.:   |:.....|..:..|:|.::..|....|.:|
SYS_METJA          1 LFRALEELIVEEVVKKI---GFQECLFPKLIPLEIMYKMRYLEGLPEGMY     47

SYSC_HUMAN        48 KV------------------IGK--GSEKSDDNSYDEKYLIATSE-QPIA     76
                     .|                  |.|  ..||..:...|..|::|.:: :|..
SYS_METJA         48 YVCPPKREPELFKEFVNEMMIKKEIPIEKLKNLLRDPGYVLAPAQCEPFY     97

SYSC_HUMAN        77 ALHRDEWLRPEDLPIKYAGLS-TCFRQEVGSHGRDTRGIFRVHQFEKIEQ    125
                     .....|.: ..|.||.:...| ..:|.|    |...||:.||::|.::|.
SYS_METJA         98 QFFEGEVI-DVDKPIMFFDRSGWTYRWE----GGGARGLDRVNEFLRVEC    142

SYSC_HUMAN       126 FVYSSPHDNKSWEMFEEMITTAEEFYQSLGIPYHIVNIVSGSLNHAASKK    175
                     ....||      |..||......::.:.|                  ::|
SYS_METJA        143 VWIGSP------EFVEETRDKTLKYAEKL------------------AEK    168

SYSC_HUMAN       176 LDLEAWFPG----------    184
                     ||||.|...          
SYS_METJA        169 LDLEYWVEVGDDPFYLEGR    187


#---------------------------------------
#---------------------------------------
########################################
# Program: needle
# Rundate: Sun Mar 25 2007 14:01:41
# Commandline: needle
#    [-asequence] SYSM_HUMAN_1.fasta
#    [-bsequence] SYS_ECOLI_1.fasta
#    -gapopen 10
#    -gapextend 0.5
#    [-outfile] stdout
# Align_format: srspair
# Report_file: stdout
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: SYSM_HUMAN
# 2: SYS_ECOLI
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 182
# Identity:      53/182 (29.1%)
# Similarity:    86/182 (47.3%)
# Gaps:           9/182 ( 4.9%)
# Score: 198.0
# 
#
#=======================================

SYSM_HUMAN         1 LQHGLVNFTFN-KLLRRGFTPMTVPDLLRGAVFEGCGMTPNANPSQIYNI     49
                     :...|..|..: ...:.|::...||.|:......|.|..|.. ...:::.
SYS_ECOLI          1 MHRALSQFMLDLHTEQHGYSENYVPYLVNQDTLYGTGQLPKF-AGDLFHT     49

SYSM_HUMAN        50 DP----ARFKDLNLAGTAEVGLAGYFMDHTVAFRDLPVRMVCSSTCYRAE     95
                     .|    |...:..|..||||.|........:...|||::|...:.|:|:|
SYS_ECOLI         50 RPLEEEADTSNYALIPTAEVPLTNLVRGEIIDEDDLPIKMTAHTPCFRSE     99

SYSM_HUMAN        96 TNT-GQEPRGLYRVHHFTKVEMFGVTGPGLEQSSQLLEEFLSLQMEILTE    144
                     ..: |::.|||.|:|.|.||||..:..|  |.|...|||......::|..
SYS_ECOLI        100 AGSYGRDTRGLIRMHQFDKVEMVQIVRP--EDSMAALEEMTGHAEKVLQL    147

SYSM_HUMAN       145 LGLHFRVLDMPTQELGLPAYRKFDIEAWMPGR    176
                     |||.:|.:.:.|.::|..|.:.:|:|.|:|.:
SYS_ECOLI        148 LGLPYRKIILCTGDMGFGACKTYDLEVWIPAQ    179


#---------------------------------------
#---------------------------------------
########################################
# Program: needle
# Rundate: Sun Mar 25 2007 14:01:41
# Commandline: needle
#    [-asequence] SYSM_HUMAN_1.fasta
#    [-bsequence] SYS_METJA_1.fasta
#    -gapopen 10
#    -gapextend 0.5
#    [-outfile] stdout
# Align_format: srspair
# Report_file: stdout
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: SYSM_HUMAN
# 2: SYS_METJA
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 228
# Identity:      42/228 (18.4%)
# Similarity:    68/228 (29.8%)
# Gaps:          93/228 (40.8%)
# Score: 53.5
# 
#
#=======================================

SYSM_HUMAN         1 LQHGLVNFTFNKLLRRGFTPMTVPDLLRGAVFEGCGMTPNANPSQI----     46
                                  |.|....:.|.::::...|:.| :.|...|.:|    
SYS_METJA          1 -------------LFRALEELIVEEVVKKIGFQEC-LFPKLIPLEIMYKM     36

SYSM_HUMAN        47 ----------YNI-----DPARFKDL--NLAGTAEVGL---------AGY     70
                               |.:     :|..||:.  .:....|:.:         .||
SYS_METJA         37 RYLEGLPEGMYYVCPPKREPELFKEFVNEMMIKKEIPIEKLKNLLRDPGY     86

SYSM_HUMAN        71 ------------FMDHTVAFRDLPVRMV-CSSTCYRAETNTGQEPRGLYR    107
                                 |.:..|...|.|:... .|...||.|   |...|||.|
SYS_METJA         87 VLAPAQCEPFYQFFEGEVIDVDKPIMFFDRSGWTYRWE---GGGARGLDR    133

SYSM_HUMAN       108 VHHFTKVEMFGVTGPGLEQSSQLLEEFLSLQMEILTELGLHFRVLDMPTQ    157
                     |:.|.:||...:..|      :.:||.....::...:|.           
SYS_METJA        134 VNEFLRVECVWIGSP------EFVEETRDKTLKYAEKLA-----------    166

SYSM_HUMAN       158 ELGLPAYRKFDIEAW---------MPGR    176
                            .|.|:|.|         :.||
SYS_METJA        167 -------EKLDLEYWVEVGDDPFYLEGR    187


#---------------------------------------
#---------------------------------------
########################################
# Program: needle
# Rundate: Sun Mar 25 2007 14:01:41
# Commandline: needle
#    [-asequence] SYS_ECOLI_1.fasta
#    [-bsequence] SYS_METJA_1.fasta
#    -gapopen 10
#    -gapextend 0.5
#    [-outfile] stdout
# Align_format: srspair
# Report_file: stdout
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: SYS_ECOLI
# 2: SYS_METJA
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 216
# Identity:      44/216 (20.4%)
# Similarity:    72/216 (33.3%)
# Gaps:          66/216 (30.6%)
# Score: 112.0
# 
#
#=======================================

SYS_ECOLI          1 MHRALSQFMLDLHTEQHGYSENYVPYLVNQDTLYGTGQLPKFAGDLFHTR     50
                     :.|||.:.:::...::.|:.|...|.|:..:.:|....|......:::..
SYS_METJA          1 LFRALEELIVEEVVKKIGFQECLFPKLIPLEIMYKMRYLEGLPEGMYYVC     50

SYS_ECOLI         51 PLEEEAD-------------------------TSNYALIPTAEVPLTNLV     75
                     |.:.|.:                         ...|.|.|....|.....
SYS_METJA         51 PPKREPELFKEFVNEMMIKKEIPIEKLKNLLRDPGYVLAPAQCEPFYQFF    100

SYS_ECOLI         76 RGEIIDEDDLPIKMTAHTPCFRSEAGSY---GRDTRGLIRMHQFDKVEMV    122
                     .||:||.|. ||..      |.....:|   |...|||.|:::|.:||.|
SYS_METJA        101 EGEVIDVDK-PIMF------FDRSGWTYRWEGGGARGLDRVNEFLRVECV    143

SYS_ECOLI        123 QIVRPEDSMAALEEMTGHAEKVLQLLGLPYRKIILCTGDMGFGACKTYDL    172
                     .|..||......::...:|||:.:.|                      ||
SYS_METJA        144 WIGSPEFVEETRDKTLKYAEKLAEKL----------------------DL    171

SYS_ECOLI        173 EVWIPAQ---------    179
                     |.|:...         
SYS_METJA        172 EYWVEVGDDPFYLEGR    187


#---------------------------------------
#---------------------------------------