########################################
# Program: needle
# Rundate: Sun Mar 25 2007 14:01:41
# Commandline: needle
#    [-asequence] SYSC_HUMAN_2.fasta
#    [-bsequence] SYSM_HUMAN_2.fasta
#    -gapopen 10
#    -gapextend 0.5
#    [-outfile] stdout
# Align_format: srspair
# Report_file: stdout
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: SYSC_HUMAN
# 2: SYSM_HUMAN
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 143
# Identity:      26/143 (18.2%)
# Similarity:    42/143 (29.4%)
# Gaps:          57/143 (39.9%)
# Score: 12.5
# 
#
#=======================================

SYSC_HUMAN         1 MVLDLDLF-RVDKGGDPALIRETQEKRFKD-PGLVDQLVKADSEWRRCRF     48
                       ||::.| ...:....||.....|.|..| |.::       |.|:..|.
SYSM_HUMAN         1 --LDIERFCACPEEAAHALELRKGELRSADLPAII-------STWQELRQ     41

SYSC_HUMAN        49 RADNLNKLKNLCSKTIGEKMKKKEPV---------GDDESVPENVLSFDD     89
                     ..:.:..|:.       ||....|.|         |:.:..|:    :..
SYSM_HUMAN        42 LQEQIRSLEE-------EKAAVTEAVRALLANQDSGEVQQDPK----YQG     80

SYSC_HUMAN        90 LTADALANLKVSQIKK--VRLLIDE------------------    112
                     |.|      :..:|:|  |.|...|                  
SYSM_HUMAN        81 LRA------RGREIRKELVHLYPREAQLEEQFYLQALKLPNQT    117


#---------------------------------------
#---------------------------------------
########################################
# Program: needle
# Rundate: Sun Mar 25 2007 14:01:41
# Commandline: needle
#    [-asequence] SYSC_HUMAN_2.fasta
#    [-bsequence] SYS_ECOLI_2.fasta
#    -gapopen 10
#    -gapextend 0.5
#    [-outfile] stdout
# Align_format: srspair
# Report_file: stdout
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: SYSC_HUMAN
# 2: SYS_ECOLI
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 121
# Identity:      31/121 (25.6%)
# Similarity:    55/121 (45.5%)
# Gaps:          23/121 (19.0%)
# Score: 54.0
# 
#
#=======================================

SYSC_HUMAN         1 MVLDLDLFRVDKGGDPALIRETQEKR-FK-DPGLVDQLVKADSEWRRCRF     48
                      :||.:|.|    .:|..:.|...:| || |   ||:|...:...:..:.
SYS_ECOLI          1 -MLDPNLLR----NEPDAVAEKLARRGFKLD---VDKLGALEERRKVLQV     42

SYSC_HUMAN        49 RADNLNKLKNLCSKTIGEKMKKKEPVGDDESVPENVLSFDDLTA-----D     93
                     :.:||...:|..||:||:...:.|.: :...:..|.|. ::|.|     |
SYS_ECOLI         43 KTENLQAERNSRSKSIGQAKARGEDI-EPLRLEVNKLG-EELDAAKAELD     90

SYSC_HUMAN        94 ALANLKVSQIKKVRLLIDE--    112
                     ||.    ::|:.:.|.|..  
SYS_ECOLI         91 ALQ----AEIRDIALTIPNLP    107


#---------------------------------------
#---------------------------------------
########################################
# Program: needle
# Rundate: Sun Mar 25 2007 14:01:41
# Commandline: needle
#    [-asequence] SYSM_HUMAN_2.fasta
#    [-bsequence] SYS_ECOLI_2.fasta
#    -gapopen 10
#    -gapextend 0.5
#    [-outfile] stdout
# Align_format: srspair
# Report_file: stdout
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: SYSM_HUMAN
# 2: SYS_ECOLI
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 147
# Identity:      24/147 (16.3%)
# Similarity:    43/147 (29.3%)
# Gaps:          70/147 (47.6%)
# Score: 35.5
# 
#
#=======================================

SYSM_HUMAN         1 ------------------------LDIERFCACPEEAAHALELRKGEL--     24
                                             ||:::..|. ||....|:::...|  
SYS_ECOLI          1 MLDPNLLRNEPDAVAEKLARRGFKLDVDKLGAL-EERRKVLQVKTENLQA     49

SYSM_HUMAN        25 ----RSADLPAIISTWQELRQLQEQIRSLEEEKAAVTEAVRALLANQDSG     70
                         ||..:....:..:::..|:.::..|.||    .:|.:|.|      
SYS_ECOLI         50 ERNSRSKSIGQAKARGEDIEPLRLEVNKLGEE----LDAAKAEL------     89

SYSM_HUMAN        71 EVQQDPKYQGLRARGREIRKELVHLYPREAQLEEQFYLQALKLPNQT    117
                             ..|:|..|:|                     ||.:||..
SYS_ECOLI         90 --------DALQAEIRDI---------------------ALTIPNLP    107


#---------------------------------------
#---------------------------------------