PAL2NAL output

               M   E   F   F   K   K   T   A   L   A   A   L   V   M   G   F   S   G   A   A
ASPG2_ECOLI    atg gag ttt ttc aaa aag acg gca ctt gcc gca ctg gtt atg ggt ttt agt ggt gca gca
               M   K   S   I   K   L   T   V   L   A   G   I   L   A   G   I   S   G   S   A
CAL11614       atg aaa tct ata aag cta act gtc tta gcc gga atc tta gca ggg atc agc ggt tcg gcc

               L   A   L   P   N   I   T   I   L   A   T   G   G   T   I   A   G   G   G   D
ASPG2_ECOLI    ttg gca tta ccc aat atc acc att tta gca acc ggc ggg acc att gcc ggt ggt ggt gac
               F   A   L   P   N   I   T   L   L   A   T   G   G   T   I   A   G   G   G   D
CAL11614       ttt gct ctg ccc aat att acc tta ttg gcg acc ggg gga act att gcc ggt ggc ggt gat

               S   A   T   K   S   N   Y   T   V   G   K   V   G   V   E   N   L   V   N   A
ASPG2_ECOLI    tcc gca acc aaa tct aac tac aca gtg ggt aaa gtt ggc gta gaa aat ctg gtt aat gcg
               S   A   T   K   S   N   Y   T   A   G   K   L   G   V   D   A   L   V   N   A
CAL11614       tca gcc act aaa tct aac tat act gcg ggc aaa cta ggg gtc gat gct ctg gtt aac gct

               V   P   Q   L   K   D   I   A   N   V   K   G   E   Q   V   V   N   I   G   S
ASPG2_ECOLI    gtg ccg caa cta aaa gac att gcg aac gtt aaa ggc gag cag gta gtg aat atc ggc tcc
               V   P   E   M   K   K   L   A   N   I   Q   G   E   Q   V   V   N   I   G   S
CAL11614       gtg cca gaa atg aaa aaa ctc gcc aat att cag ggt gag caa gtg gtc aat atc ggt tct

               Q   D   M   N   D   N   V   W   L   T   L   A   K   K   I   N   T   D   C   D
ASPG2_ECOLI    cag gac atg aac gat aat gtc tgg ctg aca ctg gcg aaa aaa att aac acc gac tgc gat
               Q   D   M   N   D   E   V   W   L   K   L   A   K   K   I   N   A   D   C   A
CAL11614       cag gat atg aat gat gaa gtt tgg ctg aaa tta gcg aaa aaa att aat gct gat tgt gcc

               K   T   D   G   F   V   I   T   H   G   T   D   T   M   E   E   T   A   Y   F
ASPG2_ECOLI    aag acc gac ggc ttc gtc att acc cac ggt acc gac acg atg gaa gaa act gct tac ttc
               K   T   D   G   F   V   I   T   H   G   T   D   T   L   E   E   T   A   Y   F
CAL11614       aaa acc gac gga ttc gtc atc act cat ggg act gat aca ttg gag gaa act gcc tat ttc

               L   D   L   T   V   K   C   D   K   P   V   V   M   V   G   A   M   R   P   S
ASPG2_ECOLI    ctc gac ctg acg gtg aaa tgc gac aaa ccg gtg gtg atg gtc ggc gca atg cgt ccg tcc
               L   D   L   T   V   N   C   D   K   P   V   V   M   V   G   A   M   R   P   A
CAL11614       ctc gat tta act gtc aat tgt gat aag cct gtg gtg atg gtt ggg gca atg cgc ccg gcc

               T   S   M   S   A   D   G   P   F   N   L   Y   N   A   V   V   T   A   A   D
ASPG2_ECOLI    acg tct atg agc gca gac ggt cca ttc aac ctg tat aac gcg gta gtg acc gca gct gat
               T   A   L   G   A   D   G   P   L   N   L   Y   N   A   V   V   V   A   S   D
CAL11614       acc gct ctg ggg gca gac ggt ccg ctt aat ctc tac aac gcc gtg gtg gtt gcc agt gac

               K   A   S   A   N   R   G   V   L   V   V   M   N   D   T   V   L   D   G   R
ASPG2_ECOLI    aaa gcc tcc gcc aac cgt ggc gtg ctg gta gtg atg aat gac acc gtg ctt gat ggc cgt
               P   N   S   A   K   R   G   V   L   V   A   M   N   D   T   V   L   T   G   R
CAL11614       cct aac tcc gct aaa cgc ggc gtg ctg gtg gcg atg aat gat acg gtg tta acc ggc cgt

               D   V   T   K   T   N   T   T   D   V   A   T   F   K   S   V   N   Y   G   P
ASPG2_ECOLI    gac gtc acc aaa acc aac acc acc gac gta gcg acc ttc aag tct gtt aac tac ggt cct
               D   V   M   K   T   N   T   T   S   V   Q   T   F   Q   S   P   N   T   G   P
CAL11614       gat gtc atg aaa acc aac acc act tcg gtg caa act ttc caa tca cct aat act ggc cct

               L   G   Y   I   H   N   G   K   I   D   Y   Q   R   T   P   A   R   K   H   T
ASPG2_ECOLI    ctg ggt tac att cac aac ggt aag att gac tac cag cgt acc ccg gca cgt aag cat acc
               L   G   Y   I   Y   D   G   K   V   N   Y   L   H   Q   P   A   P   R   Q   P
CAL11614       ctg ggc tat atc tat gat ggt aaa gtg aac tat ctt cat cag cct gca cca cgc cag cca

               S   D   T   P   F   D   V   S   K   L   N   E   L   P   K   V   G   I   V   Y
ASPG2_ECOLI    agc gac acg cca ttc gat gtc tct aag ctg aat gaa ctg ccg aaa gtc ggc att gtt tat
               -   -   -   A   F   D   I   S   K   L   N   E   L   P   K   V   G   I   I   Y
CAL11614       --- --- --- gcc ttt gat atc agc aag cta aat gag tta ccg aaa gtg ggt att att tat

               N   Y   A   N   A   S   D   L   P   A   K   A   L   V   D   A   G   Y   D   G
ASPG2_ECOLI    aac tac gct aac gca tcc gat ctt ccg gct aaa gca ctg gta gat gcg ggc tat gat ggc
               N   Y   A   N   A   S   D   L   P   A   K   A   L   I   E   D   G   Y   K   G
CAL11614       aac tat gcc aat gcc tct gac tta ccc gct aag gca ttg att gaa gat ggt tat aaa gga

               I   V   S   A   G   V   G   N   G   N   L   Y   K   S   V   F   D   T   L   A
ASPG2_ECOLI    atc gtt agc gct ggt gtg ggt aac ggc aac ctg tat aaa tct gtg ttc gac acg ctg gcg
               I   V   S   A   G   V   G   N   G   N   L   Y   K   T   V   F   D   T   L   A
CAL11614       att gtc agt gcc ggt gtg ggt aac ggt aac ctg tat aaa aca gta ttc gat acg ttg gca

               T   A   A   K   T   G   T   A   V   V   R   S   S   R   V   P   T   G   A   T
ASPG2_ECOLI    acc gcc gcg aaa acc ggt act gca gtc gtg cgt tct tcc cgc gta ccg acg ggc gct acc
               T   A   A   H   N   G   V   A   V   V   R   S   S   R   V   P   T   G   S   T
CAL11614       act gcg gca cac aat ggc gtc gcg gta gtg cgt tca tcc cgt gtc ccc act ggc tct acc

               T   Q   D   A   E   V   D   D   A   K   Y   G   F   V   A   S   G   T   L   N
ASPG2_ECOLI    act cag gat gcc gaa gtg gat gat gcg aaa tac ggc ttc gtc gcc tct ggc acg ctg aac
               T   E   D   A   E   V   D   D   T   K   Y   G   F   V   A   S   G   S   L   N
CAL11614       acc gaa gat gct gaa gtg gat gat acc aaa tat ggc ttt gtt gct tct ggc tca ctt aat

               P   Q   K   A   R   V   L   L   Q   L   A   L   T   Q   T   K   D   P   Q   Q
ASPG2_ECOLI    ccg caa aaa gcg cgc gtt ctg ctg caa ctg gct ctg acg caa acc aaa gat ccg cag cag
               P   Q   K   A   R   V   L   L   Q   L   A   L   T   Q   T   Q   K   P   Q   E
CAL11614       cca caa aaa gca cgg gta ctg ctg caa ttg gca tta acc caa acg caa aaa ccg caa gaa

               I   Q   Q   I   F   N   Q   Y
ASPG2_ECOLI    atc cag cag atc ttc aat cag tac
               I   Q   K   L   F   H   A   Y
CAL11614       att caa aag ttg ttc cac gcg tat