==== Secondary Structure Definition by the program DSSP, CMBI version ==== DATE=2015-12-16 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSPORT PROTEIN 19-NOV-15 5EUW . COMPND MOL_ID: 1; MOLECULE: PRESTIN,PRESTIN; CHAIN: A; FRAGMENT: STAS DOMAIN, . SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; ORGANISM_COMMON: NO . AUTHOR G.LOLLI,E.PASQUALETTO,E.COSTANZI,G.BONETTO,R.BATTISTUTTA . 129 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7877.6 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 89 69.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 15 11.6 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 11 8.5 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 0.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 8 6.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 18 14.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 32 24.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 1.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 505 A S 0 0 78 0, 0.0 3,-0.3 0, 0.0 42,-0.0 0.000 360.0 360.0 360.0 141.6 -19.0 -6.1 8.9 2 506 A P + 0 0 119 0, 0.0 3,-0.1 0, 0.0 41,-0.1 0.591 360.0 65.6 -82.9 -7.9 -22.0 -7.7 7.0 3 507 A S S S+ 0 0 6 1,-0.2 34,-2.4 39,-0.1 35,-1.0 0.665 114.2 8.8 -91.3 -16.9 -24.3 -4.8 7.8 4 508 A Y E -A 36 0A 68 -3,-0.3 2,-0.4 32,-0.2 32,-0.2 -0.983 61.6-145.9-153.7 160.8 -22.4 -2.1 5.8 5 509 A T E -A 35 0A 27 30,-2.0 30,-3.3 -2,-0.3 2,-0.5 -0.998 19.9-128.9-130.7 132.3 -19.5 -1.8 3.4 6 510 A V E -A 34 0A 30 -2,-0.4 13,-2.5 28,-0.2 14,-0.3 -0.681 30.9-155.8 -77.8 127.0 -17.0 1.1 3.2 7 511 A L E -AB 33 18A 3 26,-2.8 26,-0.5 -2,-0.5 2,-0.3 -0.729 11.9-172.1-104.6 154.1 -16.8 2.3 -0.4 8 512 A G E - B 0 17A 0 9,-2.7 9,-1.8 -2,-0.3 2,-0.5 -0.840 27.4-101.7-130.4 173.5 -14.1 4.2 -2.2 9 513 A Q E -CB 26 16A 45 17,-3.2 17,-2.2 -2,-0.3 7,-0.2 -0.835 23.1-128.2 -99.5 130.8 -13.7 5.9 -5.6 10 514 A L > - 0 0 51 5,-2.6 3,-1.7 -2,-0.5 5,-0.4 -0.689 53.8 -93.5 -69.6 121.2 -11.9 4.3 -8.5 11 515 A P T 3 S+ 0 0 60 0, 0.0 -1,-0.1 0, 0.0 3,-0.1 -0.064 101.5 2.6 -49.7 134.0 -9.5 7.1 -9.4 12 516 A D T 3 S+ 0 0 170 1,-0.2 2,-0.3 -3,-0.0 -2,-0.0 0.659 116.0 91.1 66.0 20.8 -10.7 9.6 -12.1 13 517 A T S < S- 0 0 47 -3,-1.7 -1,-0.2 2,-0.2 0, 0.0 -0.805 80.7-123.3-128.6 176.9 -14.1 7.9 -12.5 14 518 A D S S+ 0 0 104 -2,-0.3 2,-0.5 -3,-0.1 105,-0.3 -0.037 74.5 119.6-104.3 26.6 -17.6 8.2 -11.0 15 519 A V - 0 0 62 -5,-0.4 -5,-2.6 103,-0.1 2,-0.5 -0.832 42.2-172.4-100.1 127.4 -17.4 4.5 -10.0 16 520 A Y E +B 9 0A 26 -2,-0.5 2,-0.3 -7,-0.2 -7,-0.2 -0.979 16.1 152.2-124.2 124.0 -17.7 3.6 -6.3 17 521 A I E -B 8 0A 62 -9,-1.8 -9,-2.7 -2,-0.5 5,-0.1 -0.899 52.3 -50.5-143.5 170.3 -17.1 0.2 -5.0 18 522 A D E >> -B 7 0A 61 -2,-0.3 3,-2.4 -11,-0.2 4,-0.6 -0.165 46.3-134.7 -43.5 122.2 -16.0 -1.8 -1.9 19 523 A I T 34 S+ 0 0 39 -13,-2.5 3,-0.4 1,-0.3 6,-0.2 0.781 107.0 49.3 -54.5 -29.7 -12.7 -0.4 -0.7 20 524 A D T 34 S+ 0 0 142 -14,-0.3 -1,-0.3 1,-0.2 3,-0.1 0.485 92.9 77.6 -89.6 -2.7 -11.4 -3.9 -0.3 21 525 A A T <4 S+ 0 0 66 -3,-2.4 2,-0.3 1,-0.2 -1,-0.2 0.733 105.1 16.4 -81.4 -22.6 -12.5 -5.1 -3.9 22 526 A Y >< - 0 0 132 -4,-0.6 3,-1.7 -3,-0.4 -1,-0.2 -0.954 70.0-129.9-159.3 132.8 -9.7 -3.5 -5.8 23 527 A E T 3 S+ 0 0 158 -2,-0.3 -1,-0.1 1,-0.3 -2,-0.0 0.783 104.3 50.0 -58.6 -36.8 -6.3 -2.1 -4.7 24 528 A E T 3 S+ 0 0 84 2,-0.1 -1,-0.3 -13,-0.0 2,-0.2 0.539 80.9 109.8 -86.1 -8.2 -6.5 1.3 -6.4 25 529 A V < - 0 0 2 -3,-1.7 2,-0.4 -6,-0.2 -15,-0.2 -0.524 52.5-174.0 -64.6 131.8 -10.0 2.2 -5.1 26 530 A K B -C 9 0A 120 -17,-2.2 -17,-3.2 -2,-0.2 2,-0.1 -0.987 25.7-115.8-135.4 143.7 -9.5 5.0 -2.5 27 531 A E - 0 0 75 -2,-0.4 -19,-0.1 -19,-0.3 5,-0.1 -0.399 36.2-113.7 -66.8 152.1 -11.6 6.8 -0.1 28 532 A I > - 0 0 32 3,-0.3 3,-2.3 -2,-0.1 -1,-0.1 -0.808 33.5-109.5 -90.8 124.6 -12.1 10.6 -0.7 29 533 A P T 3 S+ 0 0 119 0, 0.0 3,-0.1 0, 0.0 22,-0.1 -0.261 103.6 16.4 -50.8 132.8 -10.6 12.8 2.0 30 534 A G T 3 S+ 0 0 14 1,-0.1 22,-2.5 20,-0.1 23,-1.7 0.338 113.1 87.9 86.1 -4.9 -13.3 14.4 4.1 31 535 A I E < - d 0 53A 7 -3,-2.3 2,-0.5 20,-0.2 -3,-0.3 -0.985 55.0-162.5-129.8 135.6 -16.0 12.0 3.0 32 536 A K E - d 0 54A 57 21,-2.1 23,-3.2 -2,-0.4 2,-0.5 -0.987 10.1-164.3-113.0 129.9 -17.1 8.6 4.3 33 537 A I E -Ad 7 55A 2 -26,-0.5 -26,-2.8 -2,-0.5 2,-0.5 -0.957 7.7-177.7-117.2 118.7 -19.2 6.5 2.0 34 538 A F E -Ad 6 56A 40 21,-2.8 23,-2.8 -2,-0.5 2,-0.5 -0.968 17.7-147.6-119.4 125.5 -21.1 3.5 3.5 35 539 A Q E -Ad 5 57A 40 -30,-3.3 -30,-2.0 -2,-0.5 2,-0.5 -0.791 23.4-130.0 -86.1 125.9 -23.2 1.0 1.5 36 540 A I E +A 4 0A 7 21,-2.5 24,-0.4 -2,-0.5 -32,-0.2 -0.694 33.1 169.9 -79.3 122.5 -26.1 -0.2 3.6 37 541 A N + 0 0 43 -34,-2.4 -33,-0.2 -2,-0.5 -1,-0.1 0.384 66.1 18.6-113.3 -4.6 -26.2 -4.0 3.5 38 542 A A S S- 0 0 30 -35,-1.0 5,-0.2 23,-0.0 -1,-0.2 -0.952 110.2 -51.8-154.8 165.6 -28.9 -4.6 6.2 39 543 A P >> - 0 0 62 0, 0.0 3,-2.4 0, 0.0 4,-1.1 -0.131 61.0-113.9 -48.2 142.5 -31.6 -2.6 7.9 40 544 A I H 3> S+ 0 0 9 1,-0.3 4,-3.1 2,-0.2 5,-0.2 0.676 111.1 68.2 -65.7 -18.7 -29.9 0.6 9.2 41 545 A Y H 3> S+ 0 0 71 2,-0.2 4,-1.0 1,-0.2 -1,-0.3 0.814 101.6 50.5 -68.8 -26.3 -30.4 -0.2 12.9 42 546 A Y H X> S+ 0 0 132 -3,-2.4 4,-1.3 2,-0.2 3,-0.6 0.957 113.0 43.8 -68.9 -52.0 -27.9 -3.0 12.4 43 547 A A H 3X S+ 0 0 18 -4,-1.1 4,-2.1 -40,-0.3 3,-0.3 0.906 109.7 58.2 -58.3 -40.6 -25.4 -0.7 10.7 44 548 A N H 3X S+ 0 0 55 -4,-3.1 4,-2.4 1,-0.2 -1,-0.2 0.833 100.6 56.8 -57.9 -34.5 -26.1 1.9 13.4 45 549 A S H << S+ 0 0 83 -4,-1.0 -1,-0.2 -3,-0.6 -2,-0.2 0.895 106.7 48.2 -65.8 -40.9 -25.0 -0.6 16.0 46 550 A D H < S+ 0 0 80 -4,-1.3 -2,-0.2 -3,-0.3 -1,-0.2 0.881 107.8 56.1 -63.8 -40.5 -21.6 -1.0 14.3 47 551 A L H < 0 0 89 -4,-2.1 -2,-0.2 -5,-0.1 -1,-0.2 0.955 360.0 360.0 -54.5 -52.8 -21.3 2.8 14.2 48 552 A Y < 0 0 241 -4,-2.4 -2,-0.2 -5,-0.1 -3,-0.2 0.996 360.0 360.0 -64.7 360.0 -21.8 2.9 17.9 49 ! 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 50 638 A N 0 0 196 -20,-0.0 2,-0.4 0, 0.0 -20,-0.1 0.000 360.0 360.0 360.0 83.5 -11.8 15.2 9.7 51 639 A I + 0 0 54 1,-0.1 -20,-0.2 -22,-0.1 3,-0.1 -0.870 360.0 173.8-110.9 132.2 -15.1 14.4 7.9 52 640 A H S S+ 0 0 76 -22,-2.5 33,-2.0 -2,-0.4 2,-0.4 0.636 73.5 32.9-103.7 -21.5 -17.6 17.0 6.5 53 641 A T E -de 31 85A 0 -23,-1.7 -21,-2.1 31,-0.2 2,-0.5 -0.998 54.3-164.0-142.8 135.8 -19.9 14.5 4.7 54 642 A V E -de 32 86A 5 31,-2.8 33,-3.0 -2,-0.4 2,-0.6 -0.984 16.2-159.5-112.3 125.6 -21.2 11.0 5.3 55 643 A I E -de 33 87A 0 -23,-3.2 -21,-2.8 -2,-0.5 2,-0.6 -0.947 0.0-160.0-109.4 123.3 -22.8 9.4 2.2 56 644 A L E -de 34 88A 13 31,-3.2 33,-3.0 -2,-0.6 2,-0.7 -0.906 9.6-147.4-103.7 121.4 -25.1 6.5 2.8 57 645 A D E +de 35 89A 5 -23,-2.8 -21,-2.5 -2,-0.6 3,-0.3 -0.826 17.4 179.6 -94.4 113.3 -25.7 4.3 -0.3 58 646 A F > + 0 0 2 31,-3.5 3,-1.8 -2,-0.7 34,-0.3 0.144 43.5 118.9 -96.7 15.3 -29.2 2.9 -0.3 59 647 A T T 3 S+ 0 0 94 1,-0.3 -1,-0.2 30,-0.2 31,-0.1 0.848 79.5 45.1 -50.8 -39.9 -28.9 1.0 -3.6 60 648 A Q T 3 S+ 0 0 98 -24,-0.4 2,-0.5 -3,-0.3 -1,-0.3 0.573 90.6 101.6 -82.4 -7.7 -29.5 -2.4 -1.9 61 649 A V < + 0 0 24 -3,-1.8 31,-0.4 29,-0.2 34,-0.2 -0.661 41.0 177.1 -88.5 121.9 -32.5 -1.2 0.2 62 650 A N - 0 0 129 -2,-0.5 2,-0.3 1,-0.3 -1,-0.2 0.745 68.8 -11.9 -94.7 -28.4 -35.9 -2.2 -1.1 63 651 A F - 0 0 141 31,-0.1 -1,-0.3 32,-0.1 2,-0.3 -0.966 60.5-136.5-161.6 160.6 -38.0 -0.7 1.7 64 652 A M - 0 0 19 -2,-0.3 2,-0.2 30,-0.2 -3,-0.0 -0.935 12.1-144.0-122.4 151.9 -37.7 0.8 5.2 65 653 A D > - 0 0 53 -2,-0.3 4,-2.3 1,-0.0 5,-0.2 -0.606 36.2 -97.1-105.3 171.9 -39.7 0.2 8.3 66 654 A S H > S+ 0 0 69 1,-0.2 4,-2.3 2,-0.2 5,-0.2 0.846 122.9 52.8 -61.3 -35.4 -40.5 2.8 11.0 67 655 A V H > S+ 0 0 79 1,-0.2 4,-2.2 2,-0.2 -1,-0.2 0.914 110.0 49.9 -67.7 -39.9 -37.7 1.8 13.3 68 656 A G H > S+ 0 0 3 2,-0.2 4,-2.6 1,-0.2 -2,-0.2 0.914 110.9 47.4 -63.6 -44.6 -35.2 2.2 10.4 69 657 A V H X S+ 0 0 2 -4,-2.3 4,-2.7 2,-0.2 -1,-0.2 0.910 112.1 50.2 -66.9 -38.9 -36.5 5.6 9.5 70 658 A K H X S+ 0 0 159 -4,-2.3 4,-1.7 -5,-0.2 -1,-0.2 0.910 111.7 49.4 -63.8 -39.8 -36.4 6.8 13.1 71 659 A T H X S+ 0 0 24 -4,-2.2 4,-2.0 2,-0.2 -2,-0.2 0.913 111.0 48.8 -62.9 -46.2 -32.8 5.4 13.4 72 660 A L H X S+ 0 0 0 -4,-2.6 4,-2.6 1,-0.2 5,-0.2 0.900 107.9 54.4 -61.5 -44.1 -31.8 7.2 10.2 73 661 A A H X S+ 0 0 39 -4,-2.7 4,-2.4 1,-0.2 -1,-0.2 0.871 108.2 50.4 -58.2 -36.6 -33.4 10.5 11.4 74 662 A G H X S+ 0 0 25 -4,-1.7 4,-2.6 2,-0.2 -1,-0.2 0.901 109.8 49.9 -68.9 -41.2 -31.3 10.2 14.6 75 663 A I H X S+ 0 0 16 -4,-2.0 4,-2.2 2,-0.2 5,-0.3 0.924 112.8 46.3 -61.7 -46.9 -28.1 9.6 12.6 76 664 A V H X S+ 0 0 18 -4,-2.6 4,-2.4 1,-0.2 -2,-0.2 0.924 115.3 47.2 -62.9 -44.6 -28.8 12.7 10.3 77 665 A K H X S+ 0 0 128 -4,-2.4 4,-2.2 -5,-0.2 -2,-0.2 0.930 112.7 47.1 -63.9 -47.6 -29.6 14.9 13.3 78 666 A E H < S+ 0 0 138 -4,-2.6 4,-0.5 2,-0.2 -1,-0.2 0.884 115.4 44.0 -71.1 -38.5 -26.6 13.9 15.4 79 667 A Y H ><>S+ 0 0 50 -4,-2.2 5,-2.3 -5,-0.2 3,-1.6 0.922 112.8 54.5 -62.4 -44.8 -24.1 14.3 12.7 80 668 A G H ><5S+ 0 0 39 -4,-2.4 3,-2.2 -5,-0.3 -2,-0.2 0.860 97.0 64.5 -56.9 -37.0 -25.8 17.6 11.7 81 669 A D T 3<5S+ 0 0 108 -4,-2.2 -1,-0.3 1,-0.3 -2,-0.2 0.722 107.1 42.7 -63.1 -20.5 -25.4 18.8 15.2 82 670 A V T < 5S- 0 0 108 -3,-1.6 -1,-0.3 -4,-0.5 -2,-0.2 0.106 126.7 -99.0-111.7 19.2 -21.6 18.8 14.7 83 671 A G T < 5S+ 0 0 45 -3,-2.2 2,-0.5 1,-0.2 -3,-0.2 0.493 80.9 132.8 85.8 5.9 -21.8 20.3 11.2 84 672 A I < - 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