RID: 6AJAE31H016 Job Title:POLN_RRVT/1-611 P13888 Polyprotein nsP1234... Program: BLASTP Query: POLN_RRVT/1-611 P13888 Polyprotein nsP1234 (P1234) (Non-structural polyprotein) (RNA-directed RNA polymerase nsP4) (2.7.7.19 {ECO:0000250|UniProtKB:P03317}) (2.7.7.48 {ECO:0000255|PROSITE-ProRule:PRU00539}) (Non-structural protein 4) (nsP4) (Fragment) ID: lcl|Query_43094(amino acid) Length: 611 Database: swissprot Non-redundant UniProtKB/SwissProt sequences Sequences producing significant alignments: Scientific Common Max Total Query E Per. Acc. Description Name Name Taxid Score Score cover Value Ident Len Accession RecName: Full=Polyprotein nsP1234; Short=P1234; AltName:... Ross river v... NA 11032 1243 1243 100% 0.0 100.00 1149 P13888.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Ross river v... NA 11031 1225 1225 100% 0.0 98.36 2480 P13887.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Getah virus NA 59300 1137 1137 100% 0.0 89.03 2467 Q5Y389.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Sagiyama virus NA 59303 1136 1136 100% 0.0 88.87 2467 Q9JGL0.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Semliki Fore... NA 11033 1021 1021 100% 0.0 81.01 2432 P08411.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Chikungunya ... NA 371094 986 986 100% 0.0 80.03 2474 Q8JUX6.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Mayaro virus... NA 374990 984 984 100% 0.0 78.23 2437 Q8QZ73.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Chikungunya ... NA 371095 981 981 100% 0.0 79.38 2474 Q5XXP4.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... O'nyong-nyon... NA 11028 977 977 100% 0.0 77.74 2514 P13886.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Igbo Ora virus NA 79899 975 975 100% 0.0 78.07 2513 O90370.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... O'nyong-nyon... NA 374989 974 974 100% 0.0 77.91 2513 O90368.1 RecName: Full=Polyprotein nsP1234; Short=P1234; AltName:... Middelburg v... NA 11023 958 958 100% 0.0 77.00 995 P03318.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Ockelbo virus NA 31699 898 898 100% 0.0 73.41 2515 P27283.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Western equi... NA 11039 896 896 99% 0.0 72.86 2467 P13896.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Sindbis virus NA 11034 895 895 100% 0.0 73.08 2513 P03317.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Aura virus NA 44158 882 882 100% 0.0 73.16 2499 Q86924.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Eastern equi... NA 374597 874 874 99% 0.0 72.53 2474 Q306W8.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Barmah Fores... NA 11020 873 873 100% 0.0 70.68 2411 P87515.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Eastern equi... NA 374596 868 868 99% 0.0 71.71 2471 Q306W6.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Eastern equi... NA 374598 865 865 99% 0.0 72.04 2494 Q4QXJ8.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 11038 858 858 99% 0.0 72.53 2493 P27282.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 36382 855 855 99% 0.0 72.20 2485 P36327.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 36385 853 853 99% 0.0 71.88 2493 P36328.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 376610 850 850 99% 0.0 71.05 2497 Q8V294.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 36384 850 850 99% 0.0 71.05 2499 Q9WJC7.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Sleeping dis... NA 78540 663 663 99% 0.0 56.21 2593 Q8QL53.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Salmon pancr... NA 84589 657 657 99% 0.0 55.88 2601 Q8JJX1.1 RecName: Full=Replicase large subunit; AltName: Full=182 kDa... Youcai mosai... NA 228578 70.9 70.9 66% 2e-11 24.22 1597 Q66220.2 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Turnip vein-... NA 29272 70.5 70.5 69% 3e-11 23.34 1601 Q88920.1 RecName: Full=Replicase large subunit; AltName: Full=194 kDa... Tobacco ratt... NA 652939 70.1 70.1 74% 4e-11 23.81 1707 Q9J942.2 RecName: Full=Replicase large subunit; AltName: Full=194 kDa... Tobacco ratt... NA 12298 69.7 69.7 74% 5e-11 23.81 1707 P05080.2 RecName: Full=Replicase large subunit; AltName:... Peanut clump... NA 652837 68.9 68.9 66% 9e-11 22.89 1672 Q84687.2 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Obuda pepper... NA 31749 66.6 66.6 45% 4e-10 25.87 1616 P90211.1 RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a... Pelargonium ... NA 650488 63.2 63.2 78% 4e-09 23.35 687 Q9DUT2.1 RecName: Full=RNA replication protein; Includes: RecName:... Citrus lepro... NA 686950 62.8 62.8 68% 7e-09 23.54 2512 Q1KZ59.1 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Tomato brown... NA 2654645 62.0 62.0 65% 1e-08 22.17 1615 A0A0S2T050.1 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Tobacco mosa... NA 138310 60.8 60.8 60% 3e-08 23.44 1616 Q98745.1 RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a... Alfalfa mosa... NA 12322 60.1 60.1 70% 4e-08 22.74 790 P03593.2 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Tomato mosai... NA 138311 60.1 60.1 65% 5e-08 22.73 1616 Q9Q1T8.2 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Tomato mosai... NA 138312 60.1 60.1 65% 5e-08 22.73 1616 P89676.1 RecName: Full=Replicase polyprotein 1ab; Contains: RecName:... Beet yellows... NA 478555 60.1 60.1 89% 5e-08 23.58 3094 Q08534.2 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Tobacco mosa... NA 12252 59.7 59.7 65% 6e-08 22.73 1616 P03587.2 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Tobacco mosa... NA 138309 59.3 59.3 60% 8e-08 23.18 1616 Q9YQ08.1 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Tobacco mosa... NA 31746 58.9 58.9 60% 1e-07 23.18 1616 P30738.2 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Tobacco mosa... NA 12251 58.5 58.5 60% 1e-07 23.18 1616 O93058.1 RecName: Full=Replicase large subunit; AltName: Full=186 kDa... Cucumber gre... NA 12236 58.5 58.5 60% 2e-07 23.48 1648 P69514.1 RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a... Olive latent... NA 650489 58.2 58.2 68% 2e-07 23.37 787 Q83944.1 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Tomato mosai... NA 138314 58.2 58.2 65% 2e-07 22.49 1616 Q9YKD6.1 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Tobacco mosa... NA 12243 58.2 58.2 60% 2e-07 23.18 1616 P03586.2 RecName: Full=Replicase polyprotein 1ab; Contains: RecName:... Grapevine le... NA 651354 56.2 56.2 68% 7e-07 23.96 2772 O71189.3 RecName: Full=RNA-directed RNA polymerase; AltName: Full=Gamma... Barley strip... NA 12327 55.1 55.1 68% 1e-06 23.50 771 Q80873.1 RecName: Full=Methyltransferase/helicase/RNA-directed RNA... Raspberry bu... NA 652675 55.1 55.1 66% 1e-06 23.56 1694 Q05983.1 RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a... Brome mosaic... NA 12302 55.1 55.1 30% 2e-06 27.13 822 P03594.1 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Pepper mild ... NA 138663 52.0 52.0 61% 1e-05 23.44 1612 P89657.1 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Odontoglossu... NA 138662 52.0 52.0 66% 2e-05 22.38 1612 Q84133.2 RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a... Cowpea chlor... NA 12303 51.6 51.6 58% 2e-05 20.99 808 P20179.1 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Pepper mild ... NA 31745 51.6 51.6 61% 2e-05 23.44 1612 P29098.2 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Sunn-hemp mo... NA 12240 51.2 51.2 60% 3e-05 23.58 1629 P89202.2 RecName: Full=Replicase large subunit; AltName:... Potato mop-t... NA 652839 50.8 50.8 57% 4e-05 22.65 1812 Q9QBU0.3 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Tobacco mild... NA 12241 49.7 49.7 57% 7e-05 24.26 1609 P18339.2 RecName: Full=RNA replication protein; Includes: RecName:... Botrytis vir... NA 686946 47.8 47.8 30% 3e-04 25.95 1896 Q9DRA1.1 RecName: Full=Replicase large subunit; AltName: Full=209 kDa... Soil-borne w... NA 652673 47.4 47.4 68% 4e-04 23.91 1828 Q89249.1 RecName: Full=RNA-directed RNA polymerase 2a; Short=2a pol;... Tobacco stre... NA 12318 47.0 47.0 55% 4e-04 24.09 800 P89678.1 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Odontoglossu... NA 138661 47.0 47.0 66% 5e-04 23.00 1612 P89659.2 RecName: Full=Replicase large subunit [Tobacco rattle virus-PSG] Tobacco ratt... NA 12297 44.7 44.7 24% 6e-04 29.03 179 P05079.1 RecName: Full=Replicase polyprotein 1ab; Contains: RecName:... Lettuce infe... NA 651355 45.8 45.8 36% 0.001 23.14 2379 Q83045.2 RecName: Full=RNA-directed RNA polymerase; AltName: Full=216.5... Apple chloro... NA 73472 43.9 43.9 45% 0.005 24.75 1885 P54891.1 RecName: Full=RNA-directed RNA polymerase; AltName: Full=216.5... Apple chloro... NA 73473 41.2 41.2 45% 0.033 24.75 1884 P27738.1 Alignments: >RecName: Full=Polyprotein nsP1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Ross river virus (STRAIN T48)] Sequence ID: P13888.2 Length: 1149 Range 1: 539 to 1149 Score:1243 bits(3215), Expect:0.0, Method:Compositional matrix adjust., Identities:611/611(100%), Positives:611/611(100%), Gaps:0/611(0%) Query 1 YIFSSDTGPGHLQQKSVRQHALPCEMLYVHEEERTYPPALDEAREKLLQAKMQMAPTEAN 60 YIFSSDTGPGHLQQKSVRQHALPCEMLYVHEEERTYPPALDEAREKLLQAKMQMAPTEAN Sbjct 539 YIFSSDTGPGHLQQKSVRQHALPCEMLYVHEEERTYPPALDEAREKLLQAKMQMAPTEAN 598 Query 61 KSRYQSRKVENMKAVIIDRLKDGARTYLTEQSEKIPTYVSKYPRPVYSPSVEDSLQNPEV 120 KSRYQSRKVENMKAVIIDRLKDGARTYLTEQSEKIPTYVSKYPRPVYSPSVEDSLQNPEV Sbjct 599 KSRYQSRKVENMKAVIIDRLKDGARTYLTEQSEKIPTYVSKYPRPVYSPSVEDSLQNPEV 658 Query 121 AVAACNAFLEANYPTVASYQITDEYDAYLDMVDGSESCLDRATFCPAKLRCYPKHHAYHQ 180 AVAACNAFLEANYPTVASYQITDEYDAYLDMVDGSESCLDRATFCPAKLRCYPKHHAYHQ Sbjct 659 AVAACNAFLEANYPTVASYQITDEYDAYLDMVDGSESCLDRATFCPAKLRCYPKHHAYHQ 718 Query 181 PQVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVLNVECFKKFACNGEYWQE 240 PQVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVLNVECFKKFACNGEYWQE Sbjct 719 PQVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVLNVECFKKFACNGEYWQE 778 Query 241 FKDNPIRITTENITTYVTRLKGPKAAALFAKTHNLVPLQEVPMDRFVVDMKRDVKVTPGT 300 FKDNPIRITTENITTYVTRLKGPKAAALFAKTHNLVPLQEVPMDRFVVDMKRDVKVTPGT Sbjct 779 FKDNPIRITTENITTYVTRLKGPKAAALFAKTHNLVPLQEVPMDRFVVDMKRDVKVTPGT 838 Query 301 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLKAVLAPNIHTLFDMSAEDFDAIIAAH 360 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLKAVLAPNIHTLFDMSAEDFDAIIAAH Sbjct 839 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLKAVLAPNIHTLFDMSAEDFDAIIAAH 898 Query 361 FQPGDAVLETDIASFDKSQddslaltalmlledlGVDQELLDLIEAAFGEITSVHLPTGT 420 FQPGDAVLETDIASFDKSQDDSLALTALMLLEDLGVDQELLDLIEAAFGEITSVHLPTGT Sbjct 899 FQPGDAVLETDIASFDKSQDDSLALTALMLLEDLGVDQELLDLIEAAFGEITSVHLPTGT 958 Query 421 RFKFGAMMKSGMFLTLFVNTLLNIVIACRVLREKLTNSVCAAFIGDDNIVHGVRSDPLMA 480 RFKFGAMMKSGMFLTLFVNTLLNIVIACRVLREKLTNSVCAAFIGDDNIVHGVRSDPLMA Sbjct 959 RFKFGAMMKSGMFLTLFVNTLLNIVIACRVLREKLTNSVCAAFIGDDNIVHGVRSDPLMA 1018 Query 481 ERCASWVNMEVKIIDATMCEKPPYFCGGFILYDKVTGSACRVADPLKRLFKLGKPLPAGD 540 ERCASWVNMEVKIIDATMCEKPPYFCGGFILYDKVTGSACRVADPLKRLFKLGKPLPAGD Sbjct 1019 ERCASWVNMEVKIIDATMCEKPPYFCGGFILYDKVTGSACRVADPLKRLFKLGKPLPAGD 1078 Query 541 TQDEDRRRALKDETDRWARVGLKSELEIALSSRYEVNGTGNIVRAMATLAKSLKNFKKLR 600 TQDEDRRRALKDETDRWARVGLKSELEIALSSRYEVNGTGNIVRAMATLAKSLKNFKKLR Sbjct 1079 TQDEDRRRALKDETDRWARVGLKSELEIALSSRYEVNGTGNIVRAMATLAKSLKNFKKLR 1138 Query 601 GPIVHLYGGPK 611 GPIVHLYGGPK Sbjct 1139 GPIVHLYGGPK 1149 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Ross river virus (STRAIN NB5092)] Sequence ID: P13887.2 Length: 2480 Range 1: 1870 to 2480 Score:1225 bits(3169), Expect:0.0, Method:Compositional matrix adjust., Identities:601/611(98%), Positives:605/611(99%), Gaps:0/611(0%) Query 1 YIFSSDTGPGHLQQKSVRQHALPCEMLYVHEEERTYPPALDEAREKLLQAKMQMAPTEAN 60 YIFSSDTGPGHLQQKSVRQHALPCEMLY HEEERTYPPALDEAREKLLQAKMQMAPTEAN Sbjct 1870 YIFSSDTGPGHLQQKSVRQHALPCEMLYAHEEERTYPPALDEAREKLLQAKMQMAPTEAN 1929 Query 61 KSRYQSRKVENMKAVIIDRLKDGARTYLTEQSEKIPTYVSKYPRPVYSPSVEDSLQNPEV 120 KSRYQSRKVENMKAVIIDRLKDGARTYL EQSEKIPTY SKYPRPVYSPSVEDSLQ+PEV Sbjct 1930 KSRYQSRKVENMKAVIIDRLKDGARTYLAEQSEKIPTYASKYPRPVYSPSVEDSLQSPEV 1989 Query 121 AVAACNAFLEANYPTVASYQITDEYDAYLDMVDGSESCLDRATFCPAKLRCYPKHHAYHQ 180 AVAACNAFLEANYPTVASYQITDEYDAYLDMVDGSESCLDRATFCPAKLRCYPKHHAYHQ Sbjct 1990 AVAACNAFLEANYPTVASYQITDEYDAYLDMVDGSESCLDRATFCPAKLRCYPKHHAYHQ 2049 Query 181 PQVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVLNVECFKKFACNGEYWQE 240 PQVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAV NVECFKKFACNGEYWQE Sbjct 2050 PQVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKFACNGEYWQE 2109 Query 241 FKDNPIRITTENITTYVTRLKGPKAAALFAKTHNLVPLQEVPMDRFVVDMKRDVKVTPGT 300 FKD+PIRITTENITTYVTRLKGPKAAALFAKTHNLVPLQEVPMDRFVVDMKRDVKVTPGT Sbjct 2110 FKDDPIRITTENITTYVTRLKGPKAAALFAKTHNLVPLQEVPMDRFVVDMKRDVKVTPGT 2169 Query 301 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLKAVLAPNIHTLFDMSAEDFDAIIAAH 360 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLKAVLAPNIHTLFDMSAEDFDAIIAAH Sbjct 2170 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLKAVLAPNIHTLFDMSAEDFDAIIAAH 2229 Query 361 FQPGDAVLETDIASFDKSQddslaltalmlledlGVDQELLDLIEAAFGEITSVHLPTGT 420 FQPGDAVLETDIASFDKSQDDSLALTALMLLEDLGVDQELLDLIE AFGEITSVHLPTGT Sbjct 2230 FQPGDAVLETDIASFDKSQDDSLALTALMLLEDLGVDQELLDLIEEAFGEITSVHLPTGT 2289 Query 421 RFKFGAMMKSGMFLTLFVNTLLNIVIACRVLREKLTNSVCAAFIGDDNIVHGVRSDPLMA 480 RFKFGAMMKSGMFLTLF+NTLLNIVIACRVLREKLTNS+CAAFIGDDNIVHGVRSDPLMA Sbjct 2290 RFKFGAMMKSGMFLTLFINTLLNIVIACRVLREKLTNSICAAFIGDDNIVHGVRSDPLMA 2349 Query 481 ERCASWVNMEVKIIDATMCEKPPYFCGGFILYDKVTGSACRVADPLKRLFKLGKPLPAGD 540 ERCASWVNMEVKIIDATMCEKPPYFCGGFILYD VTGSACRVADPLKRLFKLGKPLPAGD Sbjct 2350 ERCASWVNMEVKIIDATMCEKPPYFCGGFILYDNVTGSACRVADPLKRLFKLGKPLPAGD 2409 Query 541 TQDEDRRRALKDETDRWARVGLKSELEIALSSRYEVNGTGNIVRAMATLAKSLKNFKKLR 600 TQDEDRRRALKDETDRWARVGLKSELEIALSSRYEVNGTGNIVRAMATLAKSLKNFKKLR Sbjct 2410 TQDEDRRRALKDETDRWARVGLKSELEIALSSRYEVNGTGNIVRAMATLAKSLKNFKKLR 2469 Query 601 GPIVHLYGGPK 611 GPIVHLYGGPK Sbjct 2470 GPIVHLYGGPK 2480 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Getah virus] Sequence ID: Q5Y389.3 Length: 2467 Range 1: 1857 to 2467 Score:1137 bits(2940), Expect:0.0, Method:Compositional matrix adjust., Identities:544/611(89%), Positives:585/611(95%), Gaps:0/611(0%) Query 1 YIFSSDTGPGHLQQKSVRQHALPCEMLYVHEEERTYPPALDEAREKLLQAKMQMAPTEAN 60 YIFSSDTGPGHLQQKSVRQH LPCE LY HE+ER YPPA D +EK+LQAKMQMAPTEAN Sbjct 1857 YIFSSDTGPGHLQQKSVRQHELPCETLYAHEDERIYPPAFDGEKEKVLQAKMQMAPTEAN 1916 Query 61 KSRYQSRKVENMKAVIIDRLKDGARTYLTEQSEKIPTYVSKYPRPVYSPSVEDSLQNPEV 120 KSRYQSRKVENMKA+I++RL++GA+ YL EQ++K+PTY SKYPRPVYSPSV+DSL +PEV Sbjct 1917 KSRYQSRKVENMKALIVERLREGAKLYLHEQTDKVPTYTSKYPRPVYSPSVDDSLSDPEV 1976 Query 121 AVAACNAFLEANYPTVASYQITDEYDAYLDMVDGSESCLDRATFCPAKLRCYPKHHAYHQ 180 AVAACN+FLE NYPTVA+YQITDEYDAYLD+VDGSESCLDRATFCPAKLRCYPKHHAYHQ Sbjct 1977 AVAACNSFLEENYPTVANYQITDEYDAYLDLVDGSESCLDRATFCPAKLRCYPKHHAYHQ 2036 Query 181 PQVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVLNVECFKKFACNGEYWQE 240 PQ+RSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPT+DSAV NVE FKK+AC GEYWQE Sbjct 2037 PQIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTMDSAVFNVESFKKYACTGEYWQE 2096 Query 241 FKDNPIRITTENITTYVTRLKGPKAAALFAKTHNLVPLQEVPMDRFVVDMKRDVKVTPGT 300 FKDNPIRITTENITTYV +LKGPKAAALFAKTHNLVPLQEVPMDRFV+DMKRDVKVTPGT Sbjct 2097 FKDNPIRITTENITTYVAKLKGPKAAALFAKTHNLVPLQEVPMDRFVMDMKRDVKVTPGT 2156 Query 301 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLKAVLAPNIHTLFDMSAEDFDAIIAAH 360 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLKAVL PNIHTLFDMSAEDFDAIIAAH Sbjct 2157 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLKAVLTPNIHTLFDMSAEDFDAIIAAH 2216 Query 361 FQPGDAVLETDIASFDKSQddslaltalmlledlGVDQELLDLIEAAFGEITSVHLPTGT 420 FQPGDAVLETDIASFDKSQDDSLALTALMLLEDLGVDQELLDLIEAAFGEITSVHLPTGT Sbjct 2217 FQPGDAVLETDIASFDKSQDDSLALTALMLLEDLGVDQELLDLIEAAFGEITSVHLPTGT 2276 Query 421 RFKFGAMMKSGMFLTLFVNTLLNIVIACRVLREKLTNSVCAAFIGDDNIVHGVRSDPLMA 480 RFKFGAMMKSGMFLTLF+NTLLNIVIACRVLR+KL++S CAAFIGDDNIVHGVRSDPLMA Sbjct 2277 RFKFGAMMKSGMFLTLFINTLLNIVIACRVLRDKLSSSACAAFIGDDNIVHGVRSDPLMA 2336 Query 481 ERCASWVNMEVKIIDATMCEKPPYFCGGFILYDKVTGSACRVADPLKRLFKLGKPLPAGD 540 ERCASWVNMEVKIIDATMCEKPPYFCGGFILYD V G+ACRVADPLKRLFKLGKPLPA D Sbjct 2337 ERCASWVNMEVKIIDATMCEKPPYFCGGFILYDSVAGTACRVADPLKRLFKLGKPLPADD 2396 Query 541 TQDEDRRRALKDETDRWARVGLKSELEIALSSRYEVNGTGNIVRAMATLAKSLKNFKKLR 600 QDEDRRRALKDET +W+R+GL+ EL++ALSSRY+V+G GNI RAM+TL+KSLK+F+K+R Sbjct 2397 NQDEDRRRALKDETVKWSRIGLREELDVALSSRYQVSGVGNITRAMSTLSKSLKSFRKIR 2456 Query 601 GPIVHLYGGPK 611 GPI+HLYGGPK Sbjct 2457 GPIIHLYGGPK 2467 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Sagiyama virus] Sequence ID: Q9JGL0.3 Length: 2467 Range 1: 1857 to 2467 Score:1136 bits(2939), Expect:0.0, Method:Compositional matrix adjust., Identities:543/611(89%), Positives:585/611(95%), Gaps:0/611(0%) Query 1 YIFSSDTGPGHLQQKSVRQHALPCEMLYVHEEERTYPPALDEAREKLLQAKMQMAPTEAN 60 YIFSSDTGPGHLQQ+SVRQH LPCE LY HE+ER YPPA D +EK+LQAKMQMAPTEAN Sbjct 1857 YIFSSDTGPGHLQQRSVRQHELPCETLYAHEDERIYPPAFDGEKEKILQAKMQMAPTEAN 1916 Query 61 KSRYQSRKVENMKAVIIDRLKDGARTYLTEQSEKIPTYVSKYPRPVYSPSVEDSLQNPEV 120 KSRYQSRKVENMKA+I++RL++GA+ YL EQ++K+PTY SKYPRPVYSPSV+DSL NPEV Sbjct 1917 KSRYQSRKVENMKALIVERLREGAKLYLHEQTDKVPTYTSKYPRPVYSPSVDDSLSNPEV 1976 Query 121 AVAACNAFLEANYPTVASYQITDEYDAYLDMVDGSESCLDRATFCPAKLRCYPKHHAYHQ 180 AVAACN+FLE NYPTVA+YQITDEYDAYLD+VDGSESCLDRATFCPAKLRCYPKHHAYHQ Sbjct 1977 AVAACNSFLEENYPTVANYQITDEYDAYLDLVDGSESCLDRATFCPAKLRCYPKHHAYHQ 2036 Query 181 PQVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVLNVECFKKFACNGEYWQE 240 PQ+RSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPT+DSAV NVE FKK+AC GEYWQE Sbjct 2037 PQIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTMDSAVFNVESFKKYACTGEYWQE 2096 Query 241 FKDNPIRITTENITTYVTRLKGPKAAALFAKTHNLVPLQEVPMDRFVVDMKRDVKVTPGT 300 FKDNPIRITTENITTYV +LKGPKAAALFAKTHNLVPLQEVPMDRFV+DMKRDVKVTPGT Sbjct 2097 FKDNPIRITTENITTYVAKLKGPKAAALFAKTHNLVPLQEVPMDRFVMDMKRDVKVTPGT 2156 Query 301 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLKAVLAPNIHTLFDMSAEDFDAIIAAH 360 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLKAVL PNIHTLFDMSAEDFDAIIAAH Sbjct 2157 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLKAVLTPNIHTLFDMSAEDFDAIIAAH 2216 Query 361 FQPGDAVLETDIASFDKSQddslaltalmlledlGVDQELLDLIEAAFGEITSVHLPTGT 420 FQPGDAVLETDIASFDKSQDDSLALTALMLLEDLGVDQELLDLIEAAFGEITSVHLPTGT Sbjct 2217 FQPGDAVLETDIASFDKSQDDSLALTALMLLEDLGVDQELLDLIEAAFGEITSVHLPTGT 2276 Query 421 RFKFGAMMKSGMFLTLFVNTLLNIVIACRVLREKLTNSVCAAFIGDDNIVHGVRSDPLMA 480 RFKFGAMMKSGMFLTLF+NTLLNIVIACRVLR+KL++S CAAFIGDDNIVHGVRSDPLMA Sbjct 2277 RFKFGAMMKSGMFLTLFINTLLNIVIACRVLRDKLSSSACAAFIGDDNIVHGVRSDPLMA 2336 Query 481 ERCASWVNMEVKIIDATMCEKPPYFCGGFILYDKVTGSACRVADPLKRLFKLGKPLPAGD 540 ERCASWVNMEVKIIDATMCEKPPYFCGGFILYD V G+ACRVADPLKRLFKLGKPLPA D Sbjct 2337 ERCASWVNMEVKIIDATMCEKPPYFCGGFILYDSVAGTACRVADPLKRLFKLGKPLPADD 2396 Query 541 TQDEDRRRALKDETDRWARVGLKSELEIALSSRYEVNGTGNIVRAMATLAKSLKNFKKLR 600 QDEDRRRALKDET +W+R+GL+ EL++ALSSRY+V+G GNI RAM+TL+K+LK+F+K+R Sbjct 2397 NQDEDRRRALKDETVKWSRIGLREELDVALSSRYQVSGVGNITRAMSTLSKNLKSFRKIR 2456 Query 601 GPIVHLYGGPK 611 GPI+HLYGGPK Sbjct 2457 GPIIHLYGGPK 2467 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Semliki Forest virus] Sequence ID: P08411.2 Length: 2432 Range 1: 1819 to 2429 Score:1021 bits(2640), Expect:0.0, Method:Compositional matrix adjust., Identities:495/611(81%), Positives:539/611(88%), Gaps:0/611(0%) Query 1 YIFSSDTGPGHLQQKSVRQHALPCEMLYVHEEERTYPPALDEAREKLLQAKMQMAPTEAN 60 YIFSSDTG GHLQQKSVRQH L C L EEE+ YPP LD REKLL KMQM P+EAN Sbjct 1819 YIFSSDTGSGHLQQKSVRQHNLQCAQLDAVEEEKMYPPKLDTEREKLLLLKMQMHPSEAN 1878 Query 61 KSRYQSRKVENMKAVIIDRLKDGARTYLTEQSEKIPTYVSKYPRPVYSPSVEDSLQNPEV 120 KSRYQSRKVENMKA ++DRL GAR Y +IPTY +YPRPVYSP+V + +P+V Sbjct 1879 KSRYQSRKVENMKATVVDRLTSGARLYTGADVGRIPTYAVRYPRPVYSPTVIERFSSPDV 1938 Query 121 AVAACNAFLEANYPTVASYQITDEYDAYLDMVDGSESCLDRATFCPAKLRCYPKHHAYHQ 180 A+AACN +L NYPTVASYQITDEYDAYLDMVDGS+SCLDRATFCPAKLRCYPKHHAYHQ Sbjct 1939 AIAACNEYLSRNYPTVASYQITDEYDAYLDMVDGSDSCLDRATFCPAKLRCYPKHHAYHQ 1998 Query 181 PQVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVLNVECFKKFACNGEYWQE 240 P VRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPT+DSAV NVECFK++AC+GEYW+E Sbjct 1999 PTVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTMDSAVFNVECFKRYACSGEYWEE 2058 Query 241 FKDNPIRITTENITTYVTRLKGPKAAALFAKTHNLVPLQEVPMDRFVVDMKRDVKVTPGT 300 + PIRITTENITTYVT+LKGPKAAALFAKTHNLVPLQEVPMDRF VDMKRDVKVTPGT Sbjct 2059 YAKQPIRITTENITTYVTKLKGPKAAALFAKTHNLVPLQEVPMDRFTVDMKRDVKVTPGT 2118 Query 301 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLKAVLAPNIHTLFDMSAEDFDAIIAAH 360 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRL AVL PN+HTLFDMSAEDFDAIIA+H Sbjct 2119 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLRPNVHTLFDMSAEDFDAIIASH 2178 Query 361 FQPGDAVLETDIASFDKSQddslaltalmlledlGVDQELLDLIEAAFGEITSVHLPTGT 420 F PGD VLETDIASFDKSQDDSLALT LM+LEDLGVDQ LLDLIEAAFGEI+S HLPTGT Sbjct 2179 FHPGDPVLETDIASFDKSQDDSLALTGLMILEDLGVDQYLLDLIEAAFGEISSCHLPTGT 2238 Query 421 RFKFGAMMKSGMFLTLFVNTLLNIVIACRVLREKLTNSVCAAFIGDDNIVHGVRSDPLMA 480 RFKFGAMMKSGMFLTLF+NT+LNI IA RVL ++LT+S CAAFIGDDNIVHGV SD LMA Sbjct 2239 RFKFGAMMKSGMFLTLFINTVLNITIASRVLEQRLTDSACAAFIGDDNIVHGVISDKLMA 2298 Query 481 ERCASWVNMEVKIIDATMCEKPPYFCGGFILYDKVTGSACRVADPLKRLFKLGKPLPAGD 540 ERCASWVNMEVKIIDA M EKPPYFCGGFI++D VT +ACRV+DPLKRLFKLGKPL A D Sbjct 2299 ERCASWVNMEVKIIDAVMGEKPPYFCGGFIVFDSVTQTACRVSDPLKRLFKLGKPLTAED 2358 Query 541 TQDEDRRRALKDETDRWARVGLKSELEIALSSRYEVNGTGNIVRAMATLAKSLKNFKKLR 600 QDEDRRRAL DE +W R GL +ELE+AL+SRYEV G +I+ AMATLA+ +K FKKLR Sbjct 2359 KQDEDRRRALSDEVSKWFRTGLGAELEVALTSRYEVEGCKSILIAMATLARDIKAFKKLR 2418 Query 601 GPIVHLYGGPK 611 GP++HLYGGP+ Sbjct 2419 GPVIHLYGGPR 2429 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Chikungunya virus strain S27-African prototype] Sequence ID: Q8JUX6.1 Length: 2474 Range 1: 1864 to 2474 Score:986 bits(2548), Expect:0.0, Method:Compositional matrix adjust., Identities:489/611(80%), Positives:526/611(86%), Gaps:0/611(0%) Query 1 YIFSSDTGPGHLQQKSVRQHALPCEMLYVHEEERTYPPALDEAREKLLQAKMQMAPTEAN 60 YIFSSDTGPGHLQQKSVRQ LP L EE+ YPP LDEA+E+LL K+Q + + AN Sbjct 1864 YIFSSDTGPGHLQQKSVRQSVLPVNTLEEVHEEKCYPPKLDEAKEQLLLKKLQESASMAN 1923 Query 61 KSRYQSRKVENMKAVIIDRLKDGARTYLTEQSEKIPTYVSKYPRPVYSPSVEDSLQNPEV 120 +SRYQSRKVENMKA II RLK G R YL ++ K+PTY + YP PVYSP + L NPE Sbjct 1924 RSRYQSRKVENMKATIIQRLKRGCRLYLMSETPKVPTYRTTYPAPVYSPPINVRLSNPES 1983 Query 121 AVAACNAFLEANYPTVASYQITDEYDAYLDMVDGSESCLDRATFCPAKLRCYPKHHAYHQ 180 AVAACN FL NYPTV+SYQITDEYDAYLDMVDGSESCLDRATF P+KLR YPK HAYH Sbjct 1984 AVAACNEFLARNYPTVSSYQITDEYDAYLDMVDGSESCLDRATFNPSKLRSYPKQHAYHA 2043 Query 181 PQVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVLNVECFKKFACNGEYWQE 240 P +RSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAV NVECFKKFACN EYW+E Sbjct 2044 PSIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKFACNQEYWEE 2103 Query 241 FKDNPIRITTENITTYVTRLKGPKAAALFAKTHNLVPLQEVPMDRFVVDMKRDVKVTPGT 300 F +PIRITTEN+TTYVT+LKGPKAAALFAKTHNL+PLQEVPMDRF VDMKRDVKVTPGT Sbjct 2104 FAASPIRITTENLTTYVTKLKGPKAAALFAKTHNLLPLQEVPMDRFTVDMKRDVKVTPGT 2163 Query 301 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLKAVLAPNIHTLFDMSAEDFDAIIAAH 360 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRL AVL PN+HTLFDMSAEDFDAIIAAH Sbjct 2164 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIIAAH 2223 Query 361 FQPGDAVLETDIASFDKSQddslaltalmlledlGVDQELLDLIEAAFGEITSVHLPTGT 420 F+PGD VLETDIASFDKSQDDSLALTALMLLEDLGVD LLDLIEAAFGEI+S HLPTGT Sbjct 2224 FKPGDTVLETDIASFDKSQDDSLALTALMLLEDLGVDHSLLDLIEAAFGEISSCHLPTGT 2283 Query 421 RFKFGAMMKSGMFLTLFVNTLLNIVIACRVLREKLTNSVCAAFIGDDNIVHGVRSDPLMA 480 RFKFGAMMKSGMFLTLFVNTLLNI IA RVL ++LT S CAAFIGDDNI+HGV SD LMA Sbjct 2284 RFKFGAMMKSGMFLTLFVNTLLNITIASRVLEDRLTKSACAAFIGDDNIIHGVVSDELMA 2343 Query 481 ERCASWVNMEVKIIDATMCEKPPYFCGGFILYDKVTGSACRVADPLKRLFKLGKPLPAGD 540 RCA+W+NMEVKIIDA + +K PYFCGGFIL+D VTG+ACRVADPLKRLFKLGKPL AGD Sbjct 2344 ARCATWMNMEVKIIDAVVSQKAPYFCGGFILHDIVTGTACRVADPLKRLFKLGKPLAAGD 2403 Query 541 TQDEDRRRALKDETDRWARVGLKSELEIALSSRYEVNGTGNIVRAMATLAKSLKNFKKLR 600 QDEDRRRAL DE RW R GL ELE A+ SRYEV G +V +MAT A S NF+KLR Sbjct 2404 EQDEDRRRALADEVVRWQRTGLIDELEKAVYSRYEVQGISVVVMSMATFASSRSNFEKLR 2463 Query 601 GPIVHLYGGPK 611 GP+V LYGGPK Sbjct 2464 GPVVTLYGGPK 2474 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Mayaro virus (strain Brazil)] Sequence ID: Q8QZ73.3 Length: 2437 Range 1: 1827 to 2437 Score:984 bits(2544), Expect:0.0, Method:Compositional matrix adjust., Identities:478/611(78%), Positives:530/611(86%), Gaps:0/611(0%) Query 1 YIFSSDTGPGHLQQKSVRQHALPCEMLYVHEEERTYPPALDEAREKLLQAKMQMAPTEAN 60 YIFSSD GPGHLQQKSVRQH L ++ EE+ YPP LDEA+EK L K+QM T+AN Sbjct 1827 YIFSSDVGPGHLQQKSVRQHDLEVPIMDRVIEEKVYPPKLDEAKEKQLLLKLQMHATDAN 1886 Query 61 KSRYQSRKVENMKAVIIDRLKDGARTYLTEQSEKIPTYVSKYPRPVYSPSVEDSLQNPEV 120 +SRYQSRKVENMKA IIDRLK G+ Y++ ++K TY +Y +P YS V L + + Sbjct 1887 RSRYQSRKVENMKATIIDRLKQGSAYYVSAAADKAVTYHVRYAKPRYSVPVMQRLSSATI 1946 Query 121 AVAACNAFLEANYPTVASYQITDEYDAYLDMVDGSESCLDRATFCPAKLRCYPKHHAYHQ 180 AVA CN FL NYPTVASYQITDEYDAYLDMVDGSESCLDRA FCPAKLRCYPKHHAYH Sbjct 1947 AVATCNEFLARNYPTVASYQITDEYDAYLDMVDGSESCLDRANFCPAKLRCYPKHHAYHM 2006 Query 181 PQVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVLNVECFKKFACNGEYWQE 240 PQ+RSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAV NVECF+K+ACN EYW+E Sbjct 2007 PQIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVYNVECFRKYACNNEYWEE 2066 Query 241 FKDNPIRITTENITTYVTRLKGPKAAALFAKTHNLVPLQEVPMDRFVVDMKRDVKVTPGT 300 F PIRITTEN+TTYVT+LKG KAAALFAKTHNLVPLQEVPMDRF++DMKRDVKVTPGT Sbjct 2067 FAKKPIRITTENLTTYVTKLKGGKAAALFAKTHNLVPLQEVPMDRFIMDMKRDVKVTPGT 2126 Query 301 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLKAVLAPNIHTLFDMSAEDFDAIIAAH 360 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRL AVL PNIHTLFDMSAEDFDAII+ H Sbjct 2127 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIISEH 2186 Query 361 FQPGDAVLETDIASFDKSQddslaltalmlledlGVDQELLDLIEAAFGEITSVHLPTGT 420 F+PGD VLETDIASFDKSQDDSLALT LM+LEDLGVD +LLDLIEAAFG+ITS HLPTGT Sbjct 2187 FKPGDHVLETDIASFDKSQDDSLALTGLMILEDLGVDNQLLDLIEAAFGQITSCHLPTGT 2246 Query 421 RFKFGAMMKSGMFLTLFVNTLLNIVIACRVLREKLTNSVCAAFIGDDNIVHGVRSDPLMA 480 RFKFGAMMKSGMFLTLF+NT+LNI IA RVL +LTNS CAAFIGDDN+VHGV SD LMA Sbjct 2247 RFKFGAMMKSGMFLTLFINTVLNITIASRVLEARLTNSACAAFIGDDNVVHGVVSDKLMA 2306 Query 481 ERCASWVNMEVKIIDATMCEKPPYFCGGFILYDKVTGSACRVADPLKRLFKLGKPLPAGD 540 +RCA+WVNMEVKIIDA MC KPPYFCGGF++YD VT +ACR+ADPLKRLFKLGKPLPA D Sbjct 2307 DRCATWVNMEVKIIDAVMCIKPPYFCGGFLVYDHVTRTACRIADPLKRLFKLGKPLPADD 2366 Query 541 TQDEDRRRALKDETDRWARVGLKSELEIALSSRYEVNGTGNIVRAMATLAKSLKNFKKLR 600 QDEDRRRAL DE +W+R GL SE+E+AL+SRY + G+ N++ AM+T A S+KNF LR Sbjct 2367 CQDEDRRRALYDEVKKWSRSGLGSEIEVALASRYRLEGSYNLLLAMSTFAHSMKNFSALR 2426 Query 601 GPIVHLYGGPK 611 GP++HLYGGPK Sbjct 2427 GPVIHLYGGPK 2437 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Chikungunya virus strain Senegal 37997] Sequence ID: Q5XXP4.1 Length: 2474 Range 1: 1864 to 2474 Score:981 bits(2536), Expect:0.0, Method:Compositional matrix adjust., Identities:485/611(79%), Positives:526/611(86%), Gaps:0/611(0%) Query 1 YIFSSDTGPGHLQQKSVRQHALPCEMLYVHEEERTYPPALDEAREKLLQAKMQMAPTEAN 60 YIFSSDTGPGHLQQ+SVRQ LP L +EE+ YPP LDE +E+LL K+Q + + AN Sbjct 1864 YIFSSDTGPGHLQQRSVRQTVLPVNTLEEVQEEKCYPPKLDEVKEQLLLKKLQESASMAN 1923 Query 61 KSRYQSRKVENMKAVIIDRLKDGARTYLTEQSEKIPTYVSKYPRPVYSPSVEDSLQNPEV 120 +SRYQSRKVENMKA I+ RLK G + YL ++ K+PTY + YP PVYSP + L NPE Sbjct 1924 RSRYQSRKVENMKATIVQRLKGGCKLYLMSETPKVPTYRTTYPAPVYSPPINIRLSNPES 1983 Query 121 AVAACNAFLEANYPTVASYQITDEYDAYLDMVDGSESCLDRATFCPAKLRCYPKHHAYHQ 180 AVAACN FL NYPTVASYQITDEYDAYLDMVDGSESCLDRATF P+KLR YPK H+YH Sbjct 1984 AVAACNEFLARNYPTVASYQITDEYDAYLDMVDGSESCLDRATFNPSKLRSYPKQHSYHA 2043 Query 181 PQVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVLNVECFKKFACNGEYWQE 240 P +RSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAV NVECFKKFACN EYW+E Sbjct 2044 PTIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKFACNQEYWKE 2103 Query 241 FKDNPIRITTENITTYVTRLKGPKAAALFAKTHNLVPLQEVPMDRFVVDMKRDVKVTPGT 300 F +PIRITTEN+TTYVT+LKGPKAAALFAKTHNL+PLQEVPMDRF VDMKRDVKVTPGT Sbjct 2104 FAASPIRITTENLTTYVTKLKGPKAAALFAKTHNLLPLQEVPMDRFTVDMKRDVKVTPGT 2163 Query 301 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLKAVLAPNIHTLFDMSAEDFDAIIAAH 360 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRL AVL PN+HTLFDMSAEDFDAIIAAH Sbjct 2164 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIIAAH 2223 Query 361 FQPGDAVLETDIASFDKSQddslaltalmlledlGVDQELLDLIEAAFGEITSVHLPTGT 420 F+PGDAVLETDIASFDKSQDDSLALTALMLLEDLGVD LLDLIEAAFGEI+S HLPTGT Sbjct 2224 FKPGDAVLETDIASFDKSQDDSLALTALMLLEDLGVDHPLLDLIEAAFGEISSCHLPTGT 2283 Query 421 RFKFGAMMKSGMFLTLFVNTLLNIVIACRVLREKLTNSVCAAFIGDDNIVHGVRSDPLMA 480 RFKFGAMMKSGMFLTLFVNTLLNI IA RVL ++LT S CAAFIGDDNI+HGV SD LMA Sbjct 2284 RFKFGAMMKSGMFLTLFVNTLLNITIASRVLEDRLTRSACAAFIGDDNIIHGVVSDELMA 2343 Query 481 ERCASWVNMEVKIIDATMCEKPPYFCGGFILYDKVTGSACRVADPLKRLFKLGKPLPAGD 540 RCA+W+NMEVKIIDA + +K PYFCGGFILYD V G+ACRVADPLKRLFKLGKPL AGD Sbjct 2344 ARCATWMNMEVKIIDAVVSQKAPYFCGGFILYDTVAGTACRVADPLKRLFKLGKPLAAGD 2403 Query 541 TQDEDRRRALKDETDRWARVGLKSELEIALSSRYEVNGTGNIVRAMATLAKSLKNFKKLR 600 QD+DRRRAL DE RW R GL ELE A+ SRYEV G +V +MAT A S NF+KLR Sbjct 2404 EQDDDRRRALADEVVRWQRTGLTDELEKAVHSRYEVQGISVVVMSMATFASSRSNFEKLR 2463 Query 601 GPIVHLYGGPK 611 GP+V LYGGPK Sbjct 2464 GPVVTLYGGPK 2474 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [O'nyong-nyong virus strain Gulu] Sequence ID: P13886.2 Length: 2514 Range 1: 1904 to 2514 Score:977 bits(2526), Expect:0.0, Method:Compositional matrix adjust., Identities:475/611(78%), Positives:526/611(86%), Gaps:0/611(0%) Query 1 YIFSSDTGPGHLQQKSVRQHALPCEMLYVHEEERTYPPALDEAREKLLQAKMQMAPTEAN 60 YIFSSDTG GHLQQKSVRQ LP ++ EE+ YPP LDE +E+LL ++Q + + AN Sbjct 1904 YIFSSDTGQGHLQQKSVRQTTLPVNIVEEVHEEKCYPPKLDEIKEQLLLKRLQESASTAN 1963 Query 61 KSRYQSRKVENMKAVIIDRLKDGARTYLTEQSEKIPTYVSKYPRPVYSPSVEDSLQNPEV 120 +SRYQSRKVENMKA II RLK+G R YL ++ ++P+Y YP P+YSPS+ L NPE Sbjct 1964 RSRYQSRKVENMKATIIHRLKEGCRLYLASETPRVPSYRVTYPAPIYSPSINIKLTNPET 2023 Query 121 AVAACNAFLEANYPTVASYQITDEYDAYLDMVDGSESCLDRATFCPAKLRCYPKHHAYHQ 180 AVA CN FL NYPTVASYQ+TDEYDAYLDMVDGSESCLDRATF P+KLR YPK H+YH Sbjct 2024 AVAVCNEFLARNYPTVASYQVTDEYDAYLDMVDGSESCLDRATFNPSKLRSYPKQHSYHA 2083 Query 181 PQVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVLNVECFKKFACNGEYWQE 240 P +RSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPT+DSAV NVECFKK+ACN EYW+E Sbjct 2084 PTIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTMDSAVFNVECFKKYACNQEYWRE 2143 Query 241 FKDNPIRITTENITTYVTRLKGPKAAALFAKTHNLVPLQEVPMDRFVVDMKRDVKVTPGT 300 F +PIR+TTEN+T YVT+LKGPKAAALFAKTHNL+PLQEVPMDRF +DMKRDVKVTPGT Sbjct 2144 FASSPIRVTTENLTMYVTKLKGPKAAALFAKTHNLLPLQEVPMDRFTMDMKRDVKVTPGT 2203 Query 301 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLKAVLAPNIHTLFDMSAEDFDAIIAAH 360 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRL AVL PN+HTLFDMSAEDFDAIIA H Sbjct 2204 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIIATH 2263 Query 361 FQPGDAVLETDIASFDKSQddslaltalmlledlGVDQELLDLIEAAFGEITSVHLPTGT 420 F+PGDAVLETDIASFDKSQDDSLA TA+MLLEDLGVDQ +LDLIEAAFGEI+S HLPTGT Sbjct 2264 FKPGDAVLETDIASFDKSQDDSLASTAMMLLEDLGVDQPILDLIEAAFGEISSCHLPTGT 2323 Query 421 RFKFGAMMKSGMFLTLFVNTLLNIVIACRVLREKLTNSVCAAFIGDDNIVHGVRSDPLMA 480 RFKFGAMMKSGMFLTLFVNTLLNI IA RVL E+LT S CAAFIGDDNI+HGV SD LMA Sbjct 2324 RFKFGAMMKSGMFLTLFVNTLLNITIASRVLEERLTTSACAAFIGDDNIIHGVVSDALMA 2383 Query 481 ERCASWVNMEVKIIDATMCEKPPYFCGGFILYDKVTGSACRVADPLKRLFKLGKPLPAGD 540 RCA+W+NMEVKIIDA + EK PYFCGGFIL+D VTG++CRVADPLKRLFKLGKPL AGD Sbjct 2384 ARCATWMNMEVKIIDAVVSEKAPYFCGGFILHDTVTGTSCRVADPLKRLFKLGKPLAAGD 2443 Query 541 TQDEDRRRALKDETDRWARVGLKSELEIALSSRYEVNGTGNIVRAMATLAKSLKNFKKLR 600 QDEDRRRAL DE RW R GL +ELE A+ SRYEV G ++ +MAT A S +NFKKLR Sbjct 2444 EQDEDRRRALADEVTRWQRTGLVTELEKAVYSRYEVQGITAVITSMATFANSKENFKKLR 2503 Query 601 GPIVHLYGGPK 611 GP+V LYGGPK Sbjct 2504 GPVVTLYGGPK 2514 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Igbo Ora virus] Sequence ID: O90370.1 Length: 2513 Range 1: 1903 to 2513 Score:975 bits(2521), Expect:0.0, Method:Compositional matrix adjust., Identities:477/611(78%), Positives:526/611(86%), Gaps:0/611(0%) Query 1 YIFSSDTGPGHLQQKSVRQHALPCEMLYVHEEERTYPPALDEAREKLLQAKMQMAPTEAN 60 YIFSSDTG GHLQQKSVRQ LP ++ EE+ YPP LDE +E+LL ++Q + + AN Sbjct 1903 YIFSSDTGQGHLQQKSVRQTTLPVNIVEEVHEEKCYPPKLDETKEQLLLKRLQESASTAN 1962 Query 61 KSRYQSRKVENMKAVIIDRLKDGARTYLTEQSEKIPTYVSKYPRPVYSPSVEDSLQNPEV 120 +SRYQSRKVENMKA II RLK+G R YL + ++P+Y YP PVYSPS+ L NPE Sbjct 1963 RSRYQSRKVENMKATIIHRLKEGCRLYLASDTPRVPSYRITYPAPVYSPSINIKLSNPET 2022 Query 121 AVAACNAFLEANYPTVASYQITDEYDAYLDMVDGSESCLDRATFCPAKLRCYPKHHAYHQ 180 AVA CN FL NYPTVASYQ+TDEYDAYLDMVDGSESCLDRATF P+KLR YPK H+YH Sbjct 2023 AVAVCNEFLARNYPTVASYQVTDEYDAYLDMVDGSESCLDRATFNPSKLRSYPKQHSYHA 2082 Query 181 PQVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVLNVECFKKFACNGEYWQE 240 P +RSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPT+DSAV NVECFKK+ACN EYW+E Sbjct 2083 PTIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTMDSAVFNVECFKKYACNQEYWRE 2142 Query 241 FKDNPIRITTENITTYVTRLKGPKAAALFAKTHNLVPLQEVPMDRFVVDMKRDVKVTPGT 300 F +PIR+TTEN+T YVT+LKGPKAAALFAKTHNL+PLQEVPMDRF +DMKRDVKVTPGT Sbjct 2143 FASSPIRVTTENLTMYVTKLKGPKAAALFAKTHNLLPLQEVPMDRFTMDMKRDVKVTPGT 2202 Query 301 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLKAVLAPNIHTLFDMSAEDFDAIIAAH 360 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRL AVL PN+HTLFDMSAEDFDAIIA H Sbjct 2203 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIIATH 2262 Query 361 FQPGDAVLETDIASFDKSQddslaltalmlledlGVDQELLDLIEAAFGEITSVHLPTGT 420 F+PGDAVLETDIASFDKSQDDSLALTA+MLLEDLGVDQ +LDLIEAAFGEI+S HLPTGT Sbjct 2263 FKPGDAVLETDIASFDKSQDDSLALTAMMLLEDLGVDQPILDLIEAAFGEISSCHLPTGT 2322 Query 421 RFKFGAMMKSGMFLTLFVNTLLNIVIACRVLREKLTNSVCAAFIGDDNIVHGVRSDPLMA 480 RFKFGAMMKSGMFLTLFVNTLLNI IA RVL E+LT S CAAFIGDDNI+HGV SD LMA Sbjct 2323 RFKFGAMMKSGMFLTLFVNTLLNITIASRVLEERLTTSACAAFIGDDNIIHGVVSDALMA 2382 Query 481 ERCASWVNMEVKIIDATMCEKPPYFCGGFILYDKVTGSACRVADPLKRLFKLGKPLPAGD 540 RCA+W+NMEVKIIDA + EK PYFCGGFIL+D VTG++CRVADPLKRLFKLGKPL AGD Sbjct 2383 ARCATWMNMEVKIIDAVVSEKAPYFCGGFILHDTVTGTSCRVADPLKRLFKLGKPLAAGD 2442 Query 541 TQDEDRRRALKDETDRWARVGLKSELEIALSSRYEVNGTGNIVRAMATLAKSLKNFKKLR 600 QDEDRRRAL DE RW R GL +ELE A+ SRYEV G ++ +MAT A S +NFKKLR Sbjct 2443 EQDEDRRRALADEVTRWQRTGLVTELEKAVYSRYEVQGITAVITSMATFASSKENFKKLR 2502 Query 601 GPIVHLYGGPK 611 GP+V LYGGPK Sbjct 2503 GPVVTLYGGPK 2513 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [O'nyong-nyong virus strain SG650] Sequence ID: O90368.1 Length: 2513 Range 1: 1903 to 2513 Score:974 bits(2519), Expect:0.0, Method:Compositional matrix adjust., Identities:476/611(78%), Positives:526/611(86%), Gaps:0/611(0%) Query 1 YIFSSDTGPGHLQQKSVRQHALPCEMLYVHEEERTYPPALDEAREKLLQAKMQMAPTEAN 60 YIFSSDTG GHLQQKSVRQ LP ++ EE+ YPP LDE +E+LL ++Q + + AN Sbjct 1903 YIFSSDTGQGHLQQKSVRQTTLPVNIVEEVHEEKCYPPKLDEIKEQLLLKRLQESASTAN 1962 Query 61 KSRYQSRKVENMKAVIIDRLKDGARTYLTEQSEKIPTYVSKYPRPVYSPSVEDSLQNPEV 120 +SRYQSRKVENMKA II RLK+G R YL + ++P+Y YP PVYSPS+ L NPE Sbjct 1963 RSRYQSRKVENMKATIIHRLKEGCRLYLASDTPRVPSYRITYPAPVYSPSISIKLNNPET 2022 Query 121 AVAACNAFLEANYPTVASYQITDEYDAYLDMVDGSESCLDRATFCPAKLRCYPKHHAYHQ 180 AVA CN FL NYPTVASYQ+TDEYDAYLDMVDGSESCLDRATF P+KLR YPK H+YH Sbjct 2023 AVAVCNEFLARNYPTVASYQVTDEYDAYLDMVDGSESCLDRATFNPSKLRSYPKQHSYHA 2082 Query 181 PQVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVLNVECFKKFACNGEYWQE 240 P +RSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPT+DSAV NVECFKK+ACN EYW+E Sbjct 2083 PTIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTMDSAVFNVECFKKYACNQEYWRE 2142 Query 241 FKDNPIRITTENITTYVTRLKGPKAAALFAKTHNLVPLQEVPMDRFVVDMKRDVKVTPGT 300 F +PIR+TTEN+T YVT+LKGPKAAALFAKTHNL+PLQEVPMDRF +DMKRDVKVTPGT Sbjct 2143 FASSPIRVTTENLTMYVTKLKGPKAAALFAKTHNLLPLQEVPMDRFTMDMKRDVKVTPGT 2202 Query 301 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLKAVLAPNIHTLFDMSAEDFDAIIAAH 360 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRL AVL PN+HTLFDMSAEDFDAII+ H Sbjct 2203 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIISTH 2262 Query 361 FQPGDAVLETDIASFDKSQddslaltalmlledlGVDQELLDLIEAAFGEITSVHLPTGT 420 F+PGDAVLETDIASFDKSQDDSLALTA+MLLEDLGVDQ +LDLIEAAFGEI+S HLPTGT Sbjct 2263 FKPGDAVLETDIASFDKSQDDSLALTAMMLLEDLGVDQPILDLIEAAFGEISSCHLPTGT 2322 Query 421 RFKFGAMMKSGMFLTLFVNTLLNIVIACRVLREKLTNSVCAAFIGDDNIVHGVRSDPLMA 480 RFKFGAMMKSGMFLTLFVNTLLNI IA RVL E+LT S CAAFIGDDNI+HGV SD LMA Sbjct 2323 RFKFGAMMKSGMFLTLFVNTLLNITIASRVLEERLTTSACAAFIGDDNIIHGVVSDALMA 2382 Query 481 ERCASWVNMEVKIIDATMCEKPPYFCGGFILYDKVTGSACRVADPLKRLFKLGKPLPAGD 540 RCA+W+NMEVKIIDA + EK PYFCGGFIL+D VTG++CRVADPLKRLFKLGKPL AGD Sbjct 2383 ARCATWMNMEVKIIDAVVSEKAPYFCGGFILHDTVTGTSCRVADPLKRLFKLGKPLAAGD 2442 Query 541 TQDEDRRRALKDETDRWARVGLKSELEIALSSRYEVNGTGNIVRAMATLAKSLKNFKKLR 600 QDEDRRRAL DE RW R GL +ELE A+ SRYEV G ++ +MAT A S +NFKKLR Sbjct 2443 EQDEDRRRALADEVTRWQRTGLITELEKAVYSRYEVQGITAVITSMATFASSKENFKKLR 2502 Query 601 GPIVHLYGGPK 611 GP+V LYGGPK Sbjct 2503 GPVVTLYGGPK 2513 >RecName: Full=Polyprotein nsP1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Middelburg virus] Sequence ID: P03318.2 Length: 995 Range 1: 386 to 995 Score:958 bits(2476), Expect:0.0, Method:Compositional matrix adjust., Identities:472/613(77%), Positives:534/613(87%), Gaps:5/613(0%) Query 1 YIFSSDTGPGHLQQKSVRQHALP-CEMLYVHEEERTYPPALDEAREKLLQAKMQMAPTEA 59 YIFSSDTGPGHLQQ+SVRQ L C VHEE R + P D+ +E+LL +MQMAPTEA Sbjct 386 YIFSSDTGPGHLQQRSVRQTRLADCVAEDVHEE-RVFAPKCDKEKERLLLLQMQMAPTEA 444 Query 60 NKSRYQSRKVENMKAVIIDRLKDGARTYLTEQSEKIPTYVS-KYPRPVYSPSVEDSLQNP 118 NKSRYQSRKVENMKA +IDRL GA+ ++T ++ YV+ K+P+P+YS SV L + Sbjct 445 NKSRYQSRKVENMKAEVIDRLLGGAKLFVTPTTDC--RYVTHKHPKPMYSTSVAFYLSSA 502 Query 119 EVAVAACNAFLEANYPTVASYQITDEYDAYLDMVDGSESCLDRATFCPAKLRCYPKHHAY 178 + AVAACN FL NYPTV SYQITDEYDAYLDMVDGSESCLDRA FCP+KLR +PK H+Y Sbjct 503 KTAVAACNEFLSRNYPTVTSYQITDEYDAYLDMVDGSESCLDRAAFCPSKLRSFPKKHSY 562 Query 179 HQPQVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVLNVECFKKFACNGEYW 238 H+ ++RSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAV NVECFKK+ACN +YW Sbjct 563 HRAEIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKYACNNDYW 622 Query 239 QEFKDNPIRITTENITTYVTRLKGPKAAALFAKTHNLVPLQEVPMDRFVVDMKRDVKVTP 298 EF PIR+TTENIT+YVTRLKGPKAAALFAKT++L PLQEVPMDRFVVDMKRDVKVTP Sbjct 623 DEFAQKPIRLTTENITSYVTRLKGPKAAALFAKTYDLKPLQEVPMDRFVVDMKRDVKVTP 682 Query 299 GTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLKAVLAPNIHTLFDMSAEDFDAIIA 358 GTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRL AVL PN+HTLFDMSAEDFDAII+ Sbjct 683 GTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIIS 742 Query 359 AHFQPGDAVLETDIASFDKSQddslaltalmlledlGVDQELLDLIEAAFGEITSVHLPT 418 HF+PGDAVLETDIASFDKSQDDSLA T LMLLEDLGVDQ LL+LIEA+FGEITS HLPT Sbjct 743 EHFRPGDAVLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEASFGEITSTHLPT 802 Query 419 GTRFKFGAMMKSGMFLTLFVNTLLNIVIACRVLREKLTNSVCAAFIGDDNIVHGVRSDPL 478 GTRFKFGAMMKSGMFLTLFVNT+LN+ IA RVL E+LTNS CAAFIGDDNIVHGV+SD L Sbjct 803 GTRFKFGAMMKSGMFLTLFVNTMLNMTIASRVLEERLTNSKCAAFIGDDNIVHGVKSDKL 862 Query 479 MAERCASWVNMEVKIIDATMCEKPPYFCGGFILYDKVTGSACRVADPLKRLFKLGKPLPA 538 +AERCA+W+NMEVKIIDA MCE+PPYFCGGFI++D+VTG+ CRVADPLKRLFKLGKPLPA Sbjct 863 LAERCAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLFKLGKPLPA 922 Query 539 GDTQDEDRRRALKDETDRWARVGLKSELEIALSSRYEVNGTGNIVRAMATLAKSLKNFKK 598 D QDEDRRRAL DE RW RVG++++LE A++SRYEV G N++ A+ TL+++ NF+ Sbjct 923 EDKQDEDRRRALADEAQRWNRVGIQADLEAAMNSRYEVEGIRNVITALTTLSRNYHNFRH 982 Query 599 LRGPIVHLYGGPK 611 LRGP++ LYGGPK Sbjct 983 LRGPVIDLYGGPK 995 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Ockelbo virus] Sequence ID: P27283.2 Length: 2515 Range 1: 1906 to 2515 Score:898 bits(2320), Expect:0.0, Method:Compositional matrix adjust., Identities:450/613(73%), Positives:501/613(81%), Gaps:5/613(0%) Query 1 YIFSSDTGPGHLQQKSVRQHALPCEMLYVHEEERTYPPALDEAREKLLQAKMQMAPTEAN 60 YIFS+DTGPGHLQ KSV Q+ L L + ER Y P LD ++E+ L+ + QM PTEAN Sbjct 1906 YIFSTDTGPGHLQMKSVLQNQLTEPTLERNVLERIYAPVLDTSKEEQLKLRYQMMPTEAN 1965 Query 61 KSRYQSRKVENMKAVIIDRLKDGARTY--LTEQSEKIPTYVSKYPRPVYSPSVEDSLQNP 118 KSRYQSRKVEN KA+ +RL G R Y T+Q E Y YP+P YS SV + +P Sbjct 1966 KSRYQSRKVENQKAITTERLLSGLRLYNSATDQPE---CYKITYPKPSYSSSVAANYSDP 2022 Query 119 EVAVAACNAFLEANYPTVASYQITDEYDAYLDMVDGSESCLDRATFCPAKLRCYPKHHAY 178 + AVA CN +L NYPTVASYQITDEYDAYLDMVDG+ +CLD ATFCPAKLR YPK H Y Sbjct 2023 KFAVAVCNNYLHENYPTVASYQITDEYDAYLDMVDGTVACLDTATFCPAKLRSYPKRHEY 2082 Query 179 HQPQVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVLNVECFKKFACNGEYW 238 P +RSAVPS QNTLQNVL AATKRNCNVTQMRELPTLDSA NVECF+K+ACN EYW Sbjct 2083 RAPNIRSAVPSAMQNTLQNVLIAATKRNCNVTQMRELPTLDSATFNVECFRKYACNDEYW 2142 Query 239 QEFKDNPIRITTENITTYVTRLKGPKAAALFAKTHNLVPLQEVPMDRFVVDMKRDVKVTP 298 +EF PIRITTE +T YV RLKGPKAAALFAKTHNLVPLQEVPMDRFV+DMKRDVKVTP Sbjct 2143 EEFARKPIRITTEFVTAYVARLKGPKAAALFAKTHNLVPLQEVPMDRFVMDMKRDVKVTP 2202 Query 299 GTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLKAVLAPNIHTLFDMSAEDFDAIIA 358 GTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRL AVL PNIHTLFDMSAEDFDAIIA Sbjct 2203 GTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLTAVLLPNIHTLFDMSAEDFDAIIA 2262 Query 359 AHFQPGDAVLETDIASFDKSQddslaltalmlledlGVDQELLDLIEAAFGEITSVHLPT 418 HF+ GD VLETDIASFDKSQDD++ALT LM+LEDLGVDQ LLDLIE AFGEI+S HLPT Sbjct 2263 EHFKQGDPVLETDIASFDKSQDDAMALTGLMILEDLGVDQPLLDLIECAFGEISSTHLPT 2322 Query 419 GTRFKFGAMMKSGMFLTLFVNTLLNIVIACRVLREKLTNSVCAAFIGDDNIVHGVRSDPL 478 GTRFKFGAMMKSGMFLTLFVNT+LN+VIA RVL E+L S CAAFIGDDNI+HGV SD Sbjct 2323 GTRFKFGAMMKSGMFLTLFVNTVLNVVIASRVLEERLKTSKCAAFIGDDNIIHGVVSDKE 2382 Query 479 MAERCASWVNMEVKIIDATMCEKPPYFCGGFILYDKVTGSACRVADPLKRLFKLGKPLPA 538 MAERCA+W+NMEVKIIDA + E+PPYFCGGFIL D VT +ACRVADPLKRLFKLGKPLPA Sbjct 2383 MAERCATWLNMEVKIIDAVIGERPPYFCGGFILQDSVTSTACRVADPLKRLFKLGKPLPA 2442 Query 539 GDTQDEDRRRALKDETDRWARVGLKSELEIALSSRYEVNGTGNIVRAMATLAKSLKNFKK 598 D QDEDRRRAL DET W RVG+ L +A+++RYEV+ ++ A+ T A+S + F+ Sbjct 2443 DDEQDEDRRRALLDETKAWFRVGITDTLAVAVATRYEVDNITPVLLALRTFAQSKRAFQA 2502 Query 599 LRGPIVHLYGGPK 611 +RG I HLYGGPK Sbjct 2503 IRGEIKHLYGGPK 2515 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Western equine encephalitis virus] Sequence ID: P13896.3 Length: 2467 Range 1: 1860 to 2467 Score:896 bits(2315), Expect:0.0, Method:Compositional matrix adjust., Identities:443/608(73%), Positives:504/608(82%), Gaps:0/608(0%) Query 1 YIFSSDTGPGHLQQKSVRQHALPCEMLYVHEEERTYPPALDEAREKLLQAKMQMAPTEAN 60 YIFSS+TG GHLQQKSVRQ L +L E+ Y P LD REK+LQ K+Q+ +E N Sbjct 1860 YIFSSETGQGHLQQKSVRQCKLQEPILDRAVHEKYYAPRLDLEREKMLQKKLQLCASEGN 1919 Query 61 KSRYQSRKVENMKAVIIDRLKDGARTYLTEQSEKIPTYVSKYPRPVYSPSVEDSLQNPEV 120 +SRYQSRKVENMKA+ +RL G TYL+ + + Y YP P+YS +V + + EV Sbjct 1920 RSRYQSRKVENMKAITAERLISGLGTYLSSEVNPVECYRVNYPVPIYSSTVINRFTSAEV 1979 Query 121 AVAACNAFLEANYPTVASYQITDEYDAYLDMVDGSESCLDRATFCPAKLRCYPKHHAYHQ 180 AV CN ++ NYPTVASY ITDEYDAYLDMVDG+ CLD ATFCPAKLR YPK H+Y Q Sbjct 1980 AVKTCNLVIQENYPTVASYCITDEYDAYLDMVDGASCCLDTATFCPAKLRSYPKKHSYLQ 2039 Query 181 PQVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVLNVECFKKFACNGEYWQE 240 P++RSAVPSP QNTLQNVLAAATKRNCNVTQMRELP LDSA NV+CFKK+ACN EYW Sbjct 2040 PEIRSAVPSPIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVDCFKKYACNDEYWDT 2099 Query 241 FKDNPIRITTENITTYVTRLKGPKAAALFAKTHNLVPLQEVPMDRFVVDMKRDVKVTPGT 300 F+DNPIR+TTEN+T YVT+LKGPKAAALFA THNL PLQE+PMD+FV+D+KRDVKVTPGT Sbjct 2100 FRDNPIRLTTENVTQYVTKLKGPKAAALFANTHNLKPLQEIPMDQFVMDLKRDVKVTPGT 2159 Query 301 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLKAVLAPNIHTLFDMSAEDFDAIIAAH 360 KHTEERPKVQVIQAA+PLATAYLCGIHRELVRRL AVL PNIHTLFDMSAEDFDAIIA H Sbjct 2160 KHTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEH 2219 Query 361 FQPGDAVLETDIASFDKSQddslaltalmlledlGVDQELLDLIEAAFGEITSVHLPTGT 420 F GD VLETDIASFDKS+DD++A++ALM+LEDLGVDQ LLDLIEAAFG ITSVHLPTGT Sbjct 2220 FHHGDPVLETDIASFDKSEDDAIAISALMILEDLGVDQPLLDLIEAAFGNITSVHLPTGT 2279 Query 421 RFKFGAMMKSGMFLTLFVNTLLNIVIACRVLREKLTNSVCAAFIGDDNIVHGVRSDPLMA 480 RFKFGAMMKSGMFLTLFVNTL+NI+IA RVLRE+LT S CAA IGDDNIVHGV SD LMA Sbjct 2280 RFKFGAMMKSGMFLTLFVNTLVNIMIASRVLRERLTTSACAASIGDDNIVHGVVSDTLMA 2339 Query 481 ERCASWVNMEVKIIDATMCEKPPYFCGGFILYDKVTGSACRVADPLKRLFKLGKPLPAGD 540 ERCA+W+NMEVKIIDA + K PYFCGGFIL D++TG+ACRVADPLKRLFKLGKPLP D Sbjct 2340 ERCATWLNMEVKIIDAVIGIKAPYFCGGFILVDQITGTACRVADPLKRLFKLGKPLPVDD 2399 Query 541 TQDEDRRRALKDETDRWARVGLKSELEIALSSRYEVNGTGNIVRAMATLAKSLKNFKKLR 600 TQD DRRRAL DE RW R+G+ EL A+ SRYE+ G I+ +++TLA+S+KNFK +R Sbjct 2400 TQDCDRRRALHDEAMRWNRIGITDELVKAVESRYEIILAGLIITSLSTLAESVKNFKSIR 2459 Query 601 GPIVHLYG 608 G + LYG Sbjct 2460 GSPITLYG 2467 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; AltName: Full=p270 nonstructural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Sindbis virus] Sequence ID: P03317.2 Length: 2513 Range 1: 1904 to 2513 Score:895 bits(2313), Expect:0.0, Method:Compositional matrix adjust., Identities:448/613(73%), Positives:503/613(82%), Gaps:5/613(0%) Query 1 YIFSSDTGPGHLQQKSVRQHALPCEMLYVHEEERTYPPALDEAREKLLQAKMQMAPTEAN 60 YIFS+DTGPGHLQ+KSV Q+ L L + ER + P LD ++E+ L+ + QM PTEAN Sbjct 1904 YIFSTDTGPGHLQKKSVLQNQLTEPTLERNVLERIHAPVLDTSKEEQLKLRYQMMPTEAN 1963 Query 61 KSRYQSRKVENMKAVIIDRLKDGARTY--LTEQSEKIPTYVSKYPRPVYSPSVEDSLQNP 118 KSRYQSRKVEN KA+ +RL G R Y T+Q E Y YP+P+YS SV + +P Sbjct 1964 KSRYQSRKVENQKAITTERLLSGLRLYNSATDQPE---CYKITYPKPLYSSSVPANYSDP 2020 Query 119 EVAVAACNAFLEANYPTVASYQITDEYDAYLDMVDGSESCLDRATFCPAKLRCYPKHHAY 178 + AVA CN +L NYPTVASYQITDEYDAYLDMVDG+ +CLD ATFCPAKLR YPK H Y Sbjct 2021 QFAVAVCNNYLHENYPTVASYQITDEYDAYLDMVDGTVACLDTATFCPAKLRSYPKKHEY 2080 Query 179 HQPQVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVLNVECFKKFACNGEYW 238 P +RSAVPS QNTLQNVL AATKRNCNVTQMRELPTLDSA NVECF+K+ACN EYW Sbjct 2081 RAPNIRSAVPSAMQNTLQNVLIAATKRNCNVTQMRELPTLDSATFNVECFRKYACNDEYW 2140 Query 239 QEFKDNPIRITTENITTYVTRLKGPKAAALFAKTHNLVPLQEVPMDRFVVDMKRDVKVTP 298 +EF PIRITTE +T YV RLKGPKAAALFAKT+NLVPLQEVPMDRFV+DMKRDVKVTP Sbjct 2141 EEFARKPIRITTEFVTAYVARLKGPKAAALFAKTYNLVPLQEVPMDRFVMDMKRDVKVTP 2200 Query 299 GTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLKAVLAPNIHTLFDMSAEDFDAIIA 358 GTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRL AVL PNIHTLFDMSAEDFDAIIA Sbjct 2201 GTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLTAVLLPNIHTLFDMSAEDFDAIIA 2260 Query 359 AHFQPGDAVLETDIASFDKSQddslaltalmlledlGVDQELLDLIEAAFGEITSVHLPT 418 HF+ GD VLETDIASFDKSQDD++ALT LM+LEDLGVDQ LLDLIE AFGEI+S HLPT Sbjct 2261 EHFKQGDPVLETDIASFDKSQDDAMALTGLMILEDLGVDQPLLDLIECAFGEISSTHLPT 2320 Query 419 GTRFKFGAMMKSGMFLTLFVNTLLNIVIACRVLREKLTNSVCAAFIGDDNIVHGVRSDPL 478 GTRFKFGAMMKSGMFLTLFVNT+LN+VIA RVL E+L S CAAFIGDDNI+HGV SD Sbjct 2321 GTRFKFGAMMKSGMFLTLFVNTVLNVVIASRVLEERLKTSRCAAFIGDDNIIHGVVSDKE 2380 Query 479 MAERCASWVNMEVKIIDATMCEKPPYFCGGFILYDKVTGSACRVADPLKRLFKLGKPLPA 538 MAERCA+W+NMEVKIIDA + E+PPYFCGGFIL D VT +ACRVADPLKRLFKLGKPLPA Sbjct 2381 MAERCATWLNMEVKIIDAVIGERPPYFCGGFILQDSVTSTACRVADPLKRLFKLGKPLPA 2440 Query 539 GDTQDEDRRRALKDETDRWARVGLKSELEIALSSRYEVNGTGNIVRAMATLAKSLKNFKK 598 D QDEDRRRAL DET W RVG+ L +A+++RYEV+ ++ A+ T A+S + F+ Sbjct 2441 DDEQDEDRRRALLDETKAWFRVGITGTLAVAVTTRYEVDNITPVLLALRTFAQSKRAFQA 2500 Query 599 LRGPIVHLYGGPK 611 +RG I HLYGGPK Sbjct 2501 IRGEIKHLYGGPK 2513 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Aura virus] Sequence ID: Q86924.3 Length: 2499 Range 1: 1890 to 2499 Score:882 bits(2280), Expect:0.0, Method:Compositional matrix adjust., Identities:447/611(73%), Positives:504/611(82%), Gaps:1/611(0%) Query 1 YIFSSDTGPGHLQQKSVRQHALPCEMLYVHEEERTYPPALDEAREKLLQAKMQMAPTEAN 60 YIFSSDTGPGHLQQKSV Q++ ++ E+ + P LD +E++L+ + QM+PT AN Sbjct 1890 YIFSSDTGPGHLQQKSVIQNSTTEILIERSRLEKIHAPVLDLQKEEMLKCRYQMSPTVAN 1949 Query 61 KSRYQSRKVENMKAVIIDRLKDGARTYLTEQSEKIPTYVSKYPRPVYSPSVEDSLQNPEV 120 KSRYQSRKVENMKAV RL DG + Y+T E Y YP+P+YS SV D +PEV Sbjct 1950 KSRYQSRKVENMKAVTTGRLLDGLKMYVTPDVEA-ECYKYTYPKPMYSASVPDRFVSPEV 2008 Query 121 AVAACNAFLEANYPTVASYQITDEYDAYLDMVDGSESCLDRATFCPAKLRCYPKHHAYHQ 180 AVA CN F NYPTVASYQITDEYDAYLDMV+GS SCLD ATFCPAKLR +PK H+Y + Sbjct 2009 AVAVCNNFFHENYPTVASYQITDEYDAYLDMVEGSVSCLDTATFCPAKLRSFPKTHSYLE 2068 Query 181 PQVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVLNVECFKKFACNGEYWQE 240 P +RSAVPS FQNTLQNVL+AATKRNCNVTQMRELP LDSAV NVECFKK+ACN +YW+E Sbjct 2069 PTLRSAVPSAFQNTLQNVLSAATKRNCNVTQMRELPVLDSAVFNVECFKKYACNTDYWEE 2128 Query 241 FKDNPIRITTENITTYVTRLKGPKAAALFAKTHNLVPLQEVPMDRFVVDMKRDVKVTPGT 300 FK+ PIRITTE +T+YV RLKGP+AAALFAKTH LVPLQEVPMDRFV+DMKRDVKVTPGT Sbjct 2129 FKEKPIRITTECVTSYVARLKGPEAAALFAKTHQLVPLQEVPMDRFVMDMKRDVKVTPGT 2188 Query 301 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLKAVLAPNIHTLFDMSAEDFDAIIAAH 360 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRL AVL PNIHTLFDMSAEDFDAIIAA+ Sbjct 2189 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLTAVLLPNIHTLFDMSAEDFDAIIAAN 2248 Query 361 FQPGDAVLETDIASFDKSQddslaltalmlledlGVDQELLDLIEAAFGEITSVHLPTGT 420 F VLETDI SFDKSQDDSLALTALM+LEDLGVD L+DLIE AFGEITSVHLPT T Sbjct 2249 FSYVHPVLETDIGSFDKSQDDSLALTALMILEDLGVDDRLMDLIECAFGEITSVHLPTAT 2308 Query 421 RFKFGAMMKSGMFLTLFVNTLLNIVIACRVLREKLTNSVCAAFIGDDNIVHGVRSDPLMA 480 FKFGAMMKSGMFLTLFVNT+LN+VIA RVL ++L +S CAAFIGDDNI+HGV SD +MA Sbjct 2309 TFKFGAMMKSGMFLTLFVNTVLNVVIASRVLEQRLRDSKCAAFIGDDNIIHGVVSDKIMA 2368 Query 481 ERCASWVNMEVKIIDATMCEKPPYFCGGFILYDKVTGSACRVADPLKRLFKLGKPLPAGD 540 +RCA+W+NMEVKIIDA + K PYFCGGFIL D+VT +ACRV+DPLKRLFKLGKPLP D Sbjct 2369 DRCATWMNMEVKIIDAVIGIKAPYFCGGFILEDQVTHTACRVSDPLKRLFKLGKPLPVDD 2428 Query 541 TQDEDRRRALKDETDRWARVGLKSELEIALSSRYEVNGTGNIVRAMATLAKSLKNFKKLR 600 QD DRRRAL+DET W RVG++ EL A+ SRYEV ++ A+AT ++S K FK LR Sbjct 2429 EQDHDRRRALEDETRAWFRVGIQGELLKAVESRYEVQEVQPVLLALATFSRSDKAFKALR 2488 Query 601 GPIVHLYGGPK 611 G HLYGGPK Sbjct 2489 GSPRHLYGGPK 2499 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Eastern equine encephalitis virus (strain PE-3.0815)] Sequence ID: Q306W8.3 Length: 2474 Range 1: 1867 to 2474 Score:874 bits(2259), Expect:0.0, Method:Compositional matrix adjust., Identities:441/608(73%), Positives:503/608(82%), Gaps:0/608(0%) Query 1 YIFSSDTGPGHLQQKSVRQHALPCEMLYVHEEERTYPPALDEAREKLLQAKMQMAPTEAN 60 YIFSS+TG GHLQQKS RQ L +L E+ Y P LD REKLLQ K+Q+ +E N Sbjct 1867 YIFSSETGQGHLQQKSTRQCKLQNPILERSVHEKFYAPRLDLEREKLLQKKLQLCASEGN 1926 Query 61 KSRYQSRKVENMKAVIIDRLKDGARTYLTEQSEKIPTYVSKYPRPVYSPSVEDSLQNPEV 120 +SRYQSRKVENMKA+ +RL G YL+ +S+ + Y YP P+YS + + + +V Sbjct 1927 RSRYQSRKVENMKAITAERLLQGIGAYLSAESQPVECYKVNYPVPIYSTTRSNRFSSADV 1986 Query 121 AVAACNAFLEANYPTVASYQITDEYDAYLDMVDGSESCLDRATFCPAKLRCYPKHHAYHQ 180 AV CN L+ N+PTVASY ITDEYDAYLDMVDG+ CLD ATFCPAKLR +PK H+Y + Sbjct 1987 AVRVCNLVLQENFPTVASYTITDEYDAYLDMVDGASCCLDTATFCPAKLRSFPKKHSYLR 2046 Query 181 PQVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVLNVECFKKFACNGEYWQE 240 P++RSAVPSP QNTLQNVLAAATKRNCNVTQMRELP LDSA NVECFKK+ACN EYW Sbjct 2047 PEIRSAVPSPIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNDEYWDT 2106 Query 241 FKDNPIRITTENITTYVTRLKGPKAAALFAKTHNLVPLQEVPMDRFVVDMKRDVKVTPGT 300 FK+NPIR+TTEN+T YVT+LKGPKAAALFAKTHNL PL E+PMDRFV+D+KRDVKVTPGT Sbjct 2107 FKNNPIRLTTENVTQYVTKLKGPKAAALFAKTHNLQPLHEIPMDRFVMDLKRDVKVTPGT 2166 Query 301 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLKAVLAPNIHTLFDMSAEDFDAIIAAH 360 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRL AVL PNIHTLFDMSAEDFDAIIA H Sbjct 2167 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEH 2226 Query 361 FQPGDAVLETDIASFDKSQddslaltalmlledlGVDQELLDLIEAAFGEITSVHLPTGT 420 FQ GDAVLETDIASFDKS+DD++A++ALM+LEDLGVDQ LLDLIEAAFG ITSVHLPTGT Sbjct 2227 FQFGDAVLETDIASFDKSEDDAIAMSALMILEDLGVDQALLDLIEAAFGNITSVHLPTGT 2286 Query 421 RFKFGAMMKSGMFLTLFVNTLLNIVIACRVLREKLTNSVCAAFIGDDNIVHGVRSDPLMA 480 RFKFGAMMKSGMFLTLF+NT++NI+IA RVLRE+LTNS CAAFIGDDNIV GV+SD LMA Sbjct 2287 RFKFGAMMKSGMFLTLFINTVVNIMIASRVLRERLTNSPCAAFIGDDNIVKGVKSDALMA 2346 Query 481 ERCASWVNMEVKIIDATMCEKPPYFCGGFILYDKVTGSACRVADPLKRLFKLGKPLPAGD 540 ERCA+W+NMEVKIIDAT+ K PYFCGGFI+ D+VTG+ACRVADPLKRLFKLGKPLP D Sbjct 2347 ERCATWLNMEVKIIDATVGVKAPYFCGGFIVVDQVTGTACRVADPLKRLFKLGKPLPLDD 2406 Query 541 TQDEDRRRALKDETDRWARVGLKSELEIALSSRYEVNGTGNIVRAMATLAKSLKNFKKLR 600 QD DRRRAL DE RW R+G+ EL A+ SRYEV ++ A+ TLA ++ NFK +R Sbjct 2407 DQDGDRRRALYDEALRWNRIGITDELIKAVESRYEVFYISLVITALTTLAATVSNFKYIR 2466 Query 601 GPIVHLYG 608 G + LYG Sbjct 2467 GNPITLYG 2474 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Barmah Forest virus] Sequence ID: P87515.3 Length: 2411 Range 1: 1802 to 2411 Score:873 bits(2256), Expect:0.0, Method:Compositional matrix adjust., Identities:434/614(71%), Positives:507/614(82%), Gaps:7/614(1%) Query 1 YIFSSDTGPGHLQQKSVRQHALPCEMLYVHEE---ERTYPPALDEAREKLLQAKMQMAPT 57 YIFSSDTGPGHLQQ+SV Q+ C ++E E+ + P LD+ +E +L++K QM P+ Sbjct 1802 YIFSSDTGPGHLQQRSVLQN---CTAECIYEPAKLEKIHAPKLDKTKEDILRSKYQMKPS 1858 Query 58 EANKSRYQSRKVENMKAVIIDRLKDGARTYLTEQSEKIPTYVSKYPRPVYSPSVEDSLQN 117 EANKSRYQSRKVENMKA I+ RL DG YL + + Y YP P+YS S L + Sbjct 1859 EANKSRYQSRKVENMKAEIVGRLLDGLGEYLGTE-HPVECYRITYPVPIYSTSDLRGLSS 1917 Query 118 PEVAVAACNAFLEANYPTVASYQITDEYDAYLDMVDGSESCLDRATFCPAKLRCYPKHHA 177 + AV ACNAFLEAN+P+V SY+ITDEYDAYLDMVDGSESCLDR++F P++LR +PK H+ Sbjct 1918 AKTAVRACNAFLEANFPSVTSYKITDEYDAYLDMVDGSESCLDRSSFSPSRLRSFPKTHS 1977 Query 178 YHQPQVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVLNVECFKKFACNGEY 237 Y PQ+ SAVPSPFQNTLQNVLAAATKRNCNVTQMRELPT DSAVLNVE F+K+AC + Sbjct 1978 YLDPQINSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTYDSAVLNVEAFRKYACKPDV 2037 Query 238 WQEFKDNPIRITTENITTYVTRLKGPKAAALFAKTHNLVPLQEVPMDRFVVDMKRDVKVT 297 W E++DNPI ITTEN+TTYV +LKGPKAAALFAKTHNL+PL +VPMD+F VDMKRDVKVT Sbjct 2038 WDEYRDNPICITTENVTTYVAKLKGPKAAALFAKTHNLIPLHQVPMDKFTVDMKRDVKVT 2097 Query 298 PGTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLKAVLAPNIHTLFDMSAEDFDAII 357 PGTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRL L PNIHTLFDMSAEDFDAII Sbjct 2098 PGTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNNALFPNIHTLFDMSAEDFDAII 2157 Query 358 AAHFQPGDAVLETDIASFDKSQddslaltalmlledlGVDQELLDLIEAAFGEITSVHLP 417 A HF+ GD VLETDIASFDKSQDDS+ALTALM+LEDLGVDQ L++LIEAAFGEI S HLP Sbjct 2158 AEHFKHGDHVLETDIASFDKSQDDSMALTALMILEDLGVDQNLMNLIEAAFGEIVSTHLP 2217 Query 418 TGTRFKFGAMMKSGMFLTLFVNTLLNIVIACRVLREKLTNSVCAAFIGDDNIVHGVRSDP 477 TGTRFKFGAMMKSGMFLTLFVNT+LN+VIACRVL ++L S AFIGDDNI+HG+ SD Sbjct 2218 TGTRFKFGAMMKSGMFLTLFVNTILNVVIACRVLEDQLAQSPWPAFIGDDNIIHGIISDK 2277 Query 478 LMAERCASWVNMEVKIIDATMCEKPPYFCGGFILYDKVTGSACRVADPLKRLFKLGKPLP 537 LMA+RCA+W+NMEVKI+D+ + +PPYFCGGFI+ D VTG+ACRVADPLKRLFKLGKPLP Sbjct 2278 LMADRCATWMNMEVKILDSIVGIRPPYFCGGFIVCDDVTGTACRVADPLKRLFKLGKPLP 2337 Query 538 AGDTQDEDRRRALKDETDRWARVGLKSELEIALSSRYEVNGTGNIVRAMATLAKSLKNFK 597 D QDEDRRRAL DE W+RVGL+ + A+ RY V+ + ++ A+ TL+K+LK+F+ Sbjct 2338 LDDGQDEDRRRALHDEVKTWSRVGLRHRVCEAIEDRYAVHSSELVLLALTTLSKNLKSFR 2397 Query 598 KLRGPIVHLYGGPK 611 +RG +HLYGGPK Sbjct 2398 NIRGKPIHLYGGPK 2411 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Eastern equine encephalitis virus (strain PE-0.0155)] Sequence ID: Q306W6.3 Length: 2471 Range 1: 1864 to 2471 Score:868 bits(2242), Expect:0.0, Method:Compositional matrix adjust., Identities:436/608(72%), Positives:503/608(82%), Gaps:0/608(0%) Query 1 YIFSSDTGPGHLQQKSVRQHALPCEMLYVHEEERTYPPALDEAREKLLQAKMQMAPTEAN 60 YIFSS+TG GHLQQKS RQ L +L E+ Y P LD REKLLQ K+Q+ +E N Sbjct 1864 YIFSSETGQGHLQQKSTRQCKLQHPILERSVHEKFYAPRLDLEREKLLQRKLQLCASEGN 1923 Query 61 KSRYQSRKVENMKAVIIDRLKDGARTYLTEQSEKIPTYVSKYPRPVYSPSVEDSLQNPEV 120 +SRYQSRKVENMKA+ +RL G YL+ + + + Y YP PVYS + + + +V Sbjct 1924 RSRYQSRKVENMKAITAERLLQGIGAYLSAEPQPVECYKINYPVPVYSTTRSNRFSSADV 1983 Query 121 AVAACNAFLEANYPTVASYQITDEYDAYLDMVDGSESCLDRATFCPAKLRCYPKHHAYHQ 180 AV CN ++ N+PTVASY ITDEYDAYLDMVDG+ CLD ATFCPAKLR +PK H+Y + Sbjct 1984 AVRVCNLVMQENFPTVASYTITDEYDAYLDMVDGASCCLDTATFCPAKLRSFPKKHSYLK 2043 Query 181 PQVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVLNVECFKKFACNGEYWQE 240 P++RSAVPSP QNTLQNVLAAATKRNCNVTQMRELP LDSA NVECFKK+ACN EYW+ Sbjct 2044 PEIRSAVPSPIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNDEYWET 2103 Query 241 FKDNPIRITTENITTYVTRLKGPKAAALFAKTHNLVPLQEVPMDRFVVDMKRDVKVTPGT 300 FK+NPIR+TTEN+T YVT+LKGPKAAALFAKTHNL PL E+PMDRFV+D+KRDVKVTPGT Sbjct 2104 FKNNPIRLTTENVTQYVTKLKGPKAAALFAKTHNLQPLHEIPMDRFVMDLKRDVKVTPGT 2163 Query 301 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLKAVLAPNIHTLFDMSAEDFDAIIAAH 360 KHTEERPKVQVIQAA+PLATAYLCGIHRELVRRL AVL PNIHTLFDMSAEDFDAIIA H Sbjct 2164 KHTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEH 2223 Query 361 FQPGDAVLETDIASFDKSQddslaltalmlledlGVDQELLDLIEAAFGEITSVHLPTGT 420 FQ GDAVLETDIASFDKS+DD++A++ALM+LEDLGVDQ LLDLIEAAFG ITSVHLPTGT Sbjct 2224 FQFGDAVLETDIASFDKSEDDAIAMSALMILEDLGVDQALLDLIEAAFGNITSVHLPTGT 2283 Query 421 RFKFGAMMKSGMFLTLFVNTLLNIVIACRVLREKLTNSVCAAFIGDDNIVHGVRSDPLMA 480 RFKFGAMMKSGMFLTLF+NT++NI+IA RVLRE+LTNS CAAFIGDDNIV GV+SD LMA Sbjct 2284 RFKFGAMMKSGMFLTLFINTVVNIMIASRVLRERLTNSPCAAFIGDDNIVKGVKSDALMA 2343 Query 481 ERCASWVNMEVKIIDATMCEKPPYFCGGFILYDKVTGSACRVADPLKRLFKLGKPLPAGD 540 ERCA+W+NMEVKIIDA + K PYFCGGFI+ D++TG+ACRVADPLKRLFKLGKPLP D Sbjct 2344 ERCATWLNMEVKIIDAVVGVKAPYFCGGFIVVDQITGTACRVADPLKRLFKLGKPLPLDD 2403 Query 541 TQDEDRRRALKDETDRWARVGLKSELEIALSSRYEVNGTGNIVRAMATLAKSLKNFKKLR 600 QD DRRRAL DE RW R+G+ EL A+ SRY+V ++ A++TLA ++ NFK +R Sbjct 2404 DQDGDRRRALYDEALRWNRIGITDELVKAVESRYDVLYISLVITALSTLAATVSNFKHIR 2463 Query 601 GPIVHLYG 608 G + LYG Sbjct 2464 GNPITLYG 2471 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Eastern equine encephalitis virus (strain Florida 91-469)] Sequence ID: Q4QXJ8.3 Length: 2494 Range 1: 1887 to 2494 Score:865 bits(2235), Expect:0.0, Method:Compositional matrix adjust., Identities:438/608(72%), Positives:501/608(82%), Gaps:0/608(0%) Query 1 YIFSSDTGPGHLQQKSVRQHALPCEMLYVHEEERTYPPALDEAREKLLQAKMQMAPTEAN 60 YIFSS+TG GHLQQKS RQ L +L E+ Y P LD REKLLQ K+Q+ +E N Sbjct 1887 YIFSSETGQGHLQQKSTRQCKLQYPILERSVHEKFYAPRLDLEREKLLQKKLQLCASEGN 1946 Query 61 KSRYQSRKVENMKAVIIDRLKDGARTYLTEQSEKIPTYVSKYPRPVYSPSVEDSLQNPEV 120 +SRYQSRKVENMKA+ ++RL G +YL+ + + + Y YP P+YS + +S + EV Sbjct 1947 RSRYQSRKVENMKAITVERLLQGIGSYLSAEPQPVECYKVTYPAPMYSSTASNSFSSAEV 2006 Query 121 AVAACNAFLEANYPTVASYQITDEYDAYLDMVDGSESCLDRATFCPAKLRCYPKHHAYHQ 180 AV CN L+ N+PTVASY ITDEYDAYLDMVDG+ CLD ATFCPAKLR +PK H+Y + Sbjct 2007 AVKVCNLVLQENFPTVASYNITDEYDAYLDMVDGASCCLDTATFCPAKLRSFPKKHSYLR 2066 Query 181 PQVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVLNVECFKKFACNGEYWQE 240 P++RSAVPSP QNTLQNVLAAATKRNCNVTQMRELP LDSA NVECFKK+ACN EYW Sbjct 2067 PEIRSAVPSPIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNDEYWDF 2126 Query 241 FKDNPIRITTENITTYVTRLKGPKAAALFAKTHNLVPLQEVPMDRFVVDMKRDVKVTPGT 300 +K NPIR+T EN+T YVT+LKGPKAAALFAKTHNL PL E+PMDRFV+D+KRDVKVTPGT Sbjct 2127 YKTNPIRLTAENVTQYVTKLKGPKAAALFAKTHNLQPLHEIPMDRFVMDLKRDVKVTPGT 2186 Query 301 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLKAVLAPNIHTLFDMSAEDFDAIIAAH 360 KHTEERPKVQVIQAA+PLATAYLCGIHRELVRRL AVL PNIHTLFDMSAEDFDAIIA H Sbjct 2187 KHTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEH 2246 Query 361 FQPGDAVLETDIASFDKSQddslaltalmlledlGVDQELLDLIEAAFGEITSVHLPTGT 420 FQ GDAVLETDIASFDKS+DD++A++ALM+LEDLGVDQ LL+LIEAAFG ITSVHLPTGT Sbjct 2247 FQFGDAVLETDIASFDKSEDDAIAMSALMILEDLGVDQALLNLIEAAFGNITSVHLPTGT 2306 Query 421 RFKFGAMMKSGMFLTLFVNTLLNIVIACRVLREKLTNSVCAAFIGDDNIVHGVRSDPLMA 480 RFKFGAMMKSGMFLTLF+NT++NI+IA RVLRE+LT S CAAFIGDDNIV GV SD LMA Sbjct 2307 RFKFGAMMKSGMFLTLFINTVVNIMIASRVLRERLTTSPCAAFIGDDNIVKGVTSDALMA 2366 Query 481 ERCASWVNMEVKIIDATMCEKPPYFCGGFILYDKVTGSACRVADPLKRLFKLGKPLPAGD 540 ERCA+W+NMEVKIIDA + K PYFCGGFI+ D++TG+ACRVADPLKRLFKLGKPLP D Sbjct 2367 ERCATWLNMEVKIIDAVVGVKAPYFCGGFIVVDQITGTACRVADPLKRLFKLGKPLPLDD 2426 Query 541 TQDEDRRRALKDETDRWARVGLKSELEIALSSRYEVNGTGNIVRAMATLAKSLKNFKKLR 600 QD DRRRAL DE RW R+G+ EL A+ SRYEVN I+ A+ TLA S+ NFK +R Sbjct 2427 DQDVDRRRALHDEAARWNRIGITEELVKAVESRYEVNYVSLIITALTTLASSVSNFKHIR 2486 Query 601 GPIVHLYG 608 G + LYG Sbjct 2487 GHPITLYG 2494 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain Trinidad donkey)] Sequence ID: P27282.3 Length: 2493 Range 1: 1887 to 2493 Score:858 bits(2217), Expect:0.0, Method:Compositional matrix adjust., Identities:441/608(73%), Positives:504/608(82%), Gaps:1/608(0%) Query 1 YIFSSDTGPGHLQQKSVRQHALPCEMLYVHEEERTYPPALDEAREKLLQAKMQMAPTEAN 60 YIFSSDTG GHLQQKSVRQ L +L E E +Y P LD+ +E+LL+ K+Q+ PT AN Sbjct 1887 YIFSSDTGQGHLQQKSVRQTVLSEVVLERTELEISYAPRLDQEKEELLRKKLQLNPTPAN 1946 Query 61 KSRYQSRKVENMKAVIIDRLKDGARTYLTEQSEKIPTYVSKYPRPVYSPSVEDSLQNPEV 120 +SRYQSRKVENMKA+ R+ G YL + K+ Y + +P P+YS SV + +P+V Sbjct 1947 RSRYQSRKVENMKAITARRILQGLGHYLKAEG-KVECYRTLHPVPLYSSSVNRAFSSPKV 2005 Query 121 AVAACNAFLEANYPTVASYQITDEYDAYLDMVDGSESCLDRATFCPAKLRCYPKHHAYHQ 180 AV ACNA L+ N+PTVASY I EYDAYLDMVDG+ CLD A+FCPAKLR +PK H+Y + Sbjct 2006 AVEACNAMLKENFPTVASYCIIPEYDAYLDMVDGASCCLDTASFCPAKLRSFPKKHSYLE 2065 Query 181 PQVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVLNVECFKKFACNGEYWQE 240 P +RSAVPS QNTLQNVLAAATKRNCNVTQMRELP LDSA NVECFKK+ACN EYW+ Sbjct 2066 PTIRSAVPSAIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNNEYWET 2125 Query 241 FKDNPIRITTENITTYVTRLKGPKAAALFAKTHNLVPLQEVPMDRFVVDMKRDVKVTPGT 300 FK+NPIR+T EN+ Y+T+LKGPKAAALFAKTHNL LQ++PMDRFV+D+KRDVKVTPGT Sbjct 2126 FKENPIRLTEENVVNYITKLKGPKAAALFAKTHNLNMLQDIPMDRFVMDLKRDVKVTPGT 2185 Query 301 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLKAVLAPNIHTLFDMSAEDFDAIIAAH 360 KHTEERPKVQVIQAA+PLATAYLCGIHRELVRRL AVL PNIHTLFDMSAEDFDAIIA H Sbjct 2186 KHTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEH 2245 Query 361 FQPGDAVLETDIASFDKSQddslaltalmlledlGVDQELLDLIEAAFGEITSVHLPTGT 420 FQPGD VLETDIASFDKS+DD++ALTALM+LEDLGVD ELL LIEAAFGEI+S+HLPT T Sbjct 2246 FQPGDCVLETDIASFDKSEDDAMALTALMILEDLGVDAELLTLIEAAFGEISSIHLPTKT 2305 Query 421 RFKFGAMMKSGMFLTLFVNTLLNIVIACRVLREKLTNSVCAAFIGDDNIVHGVRSDPLMA 480 +FKFGAMMKSGMFLTLFVNT++NIVIA RVLRE+LT S CAAFIGDDNIV GV+SD LMA Sbjct 2306 KFKFGAMMKSGMFLTLFVNTVINIVIASRVLRERLTGSPCAAFIGDDNIVKGVKSDKLMA 2365 Query 481 ERCASWVNMEVKIIDATMCEKPPYFCGGFILYDKVTGSACRVADPLKRLFKLGKPLPAGD 540 +RCA+W+NMEVKIIDA + EK PYFCGGFIL D VTG+ACRVADPLKRLFKLGKPL A D Sbjct 2366 DRCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVADPLKRLFKLGKPLAADD 2425 Query 541 TQDEDRRRALKDETDRWARVGLKSELEIALSSRYEVNGTGNIVRAMATLAKSLKNFKKLR 600 D+DRRRAL +E+ RW RVG+ SEL A+ SRYE GT IV AM TLA S+K+F LR Sbjct 2426 EHDDDRRRALHEESTRWNRVGILSELCKAVESRYETVGTSIIVMAMTTLASSVKSFSYLR 2485 Query 601 GPIVHLYG 608 G + LYG Sbjct 2486 GAPITLYG 2493 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain 3880)] Sequence ID: P36327.3 Length: 2485 Range 1: 1879 to 2485 Score:855 bits(2208), Expect:0.0, Method:Compositional matrix adjust., Identities:439/608(72%), Positives:503/608(82%), Gaps:1/608(0%) Query 1 YIFSSDTGPGHLQQKSVRQHALPCEMLYVHEEERTYPPALDEAREKLLQAKMQMAPTEAN 60 YIFSSDTG GHLQQKSVRQ L +L E E +Y P LD+ +E+LL+ K+Q+ PT AN Sbjct 1879 YIFSSDTGQGHLQQKSVRQTVLSEVVLERTELEISYAPRLDQEKEELLRKKLQLNPTPAN 1938 Query 61 KSRYQSRKVENMKAVIIDRLKDGARTYLTEQSEKIPTYVSKYPRPVYSPSVEDSLQNPEV 120 +SRYQSR+VENMKA+ R+ G YL + K+ Y + +P P+YS SV + +P+V Sbjct 1939 RSRYQSRRVENMKAITARRILQGLGHYLKAEG-KVECYRTLHPVPLYSSSVNRAFSSPKV 1997 Query 121 AVAACNAFLEANYPTVASYQITDEYDAYLDMVDGSESCLDRATFCPAKLRCYPKHHAYHQ 180 AV ACNA L+ N+PTVASY I EYDAYLDMVDG+ CLD A+FCPAKLR +PK H+Y + Sbjct 1998 AVEACNAMLKENFPTVASYCIIPEYDAYLDMVDGASCCLDTASFCPAKLRSFPKKHSYLE 2057 Query 181 PQVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVLNVECFKKFACNGEYWQE 240 P +RSAVPS QNTLQNVLAAATKRNCNVTQMRELP LDSA NVECFKK+ACN EYW+ Sbjct 2058 PTIRSAVPSAIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNNEYWET 2117 Query 241 FKDNPIRITTENITTYVTRLKGPKAAALFAKTHNLVPLQEVPMDRFVVDMKRDVKVTPGT 300 FK+NPIR+T EN+ Y+T+LKGPKAAALFAKTHNL LQ++PMDRFV+D+KRDVKVTPGT Sbjct 2118 FKENPIRLTEENVVNYITKLKGPKAAALFAKTHNLNMLQDIPMDRFVMDLKRDVKVTPGT 2177 Query 301 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLKAVLAPNIHTLFDMSAEDFDAIIAAH 360 KHTEERPKVQVIQAA+PLATAYLCGIHRELVRRL AVL PNIHTLFDMSAEDFDAIIA H Sbjct 2178 KHTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEH 2237 Query 361 FQPGDAVLETDIASFDKSQddslaltalmlledlGVDQELLDLIEAAFGEITSVHLPTGT 420 FQPGD VLETDIASFDKS+DD++ALTALM+LEDLGVD ELL LIEAAFGEI+S+HLPT T Sbjct 2238 FQPGDCVLETDIASFDKSEDDAMALTALMILEDLGVDAELLTLIEAAFGEISSIHLPTKT 2297 Query 421 RFKFGAMMKSGMFLTLFVNTLLNIVIACRVLREKLTNSVCAAFIGDDNIVHGVRSDPLMA 480 +FKFGAMMKSGMFLTLFVNT++NIVIA RVLRE+LT S CAAFIGDDNIV GV+SD LMA Sbjct 2298 KFKFGAMMKSGMFLTLFVNTVINIVIASRVLRERLTGSPCAAFIGDDNIVKGVKSDKLMA 2357 Query 481 ERCASWVNMEVKIIDATMCEKPPYFCGGFILYDKVTGSACRVADPLKRLFKLGKPLPAGD 540 +RCA+W+NMEVKIIDA + EK PYFCGGFIL D VTG+ACRVADPLKRLFKLGKPL A D Sbjct 2358 DRCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVADPLKRLFKLGKPLAADD 2417 Query 541 TQDEDRRRALKDETDRWARVGLKSELEIALSSRYEVNGTGNIVRAMATLAKSLKNFKKLR 600 D+DRRRAL +E+ RW RVG+ EL A+ SRYE GT IV AM TLA S+K+F LR Sbjct 2418 EHDDDRRRALHEESTRWNRVGILPELCKAVESRYETVGTSIIVMAMTTLASSVKSFSYLR 2477 Query 601 GPIVHLYG 608 G + LYG Sbjct 2478 GAPITLYG 2485 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain P676)] Sequence ID: P36328.2 Length: 2493 Range 1: 1887 to 2493 Score:853 bits(2203), Expect:0.0, Method:Compositional matrix adjust., Identities:437/608(72%), Positives:501/608(82%), Gaps:1/608(0%) Query 1 YIFSSDTGPGHLQQKSVRQHALPCEMLYVHEEERTYPPALDEAREKLLQAKMQMAPTEAN 60 YIFSSDTG GHLQQKSVRQ L +L E E +Y P LD+ +E+LL+ K+Q+ PT AN Sbjct 1887 YIFSSDTGQGHLQQKSVRQTVLSEVVLERTELEISYAPRLDQEKEELLRKKLQLNPTPAN 1946 Query 61 KSRYQSRKVENMKAVIIDRLKDGARTYLTEQSEKIPTYVSKYPRPVYSPSVEDSLQNPEV 120 +SRYQSR+VENMKA+ R+ G YL + K+ Y + +P P+YS SV + +P+V Sbjct 1947 RSRYQSRRVENMKAITARRILQGLGHYLKAEG-KVECYRTLHPVPLYSSSVNRAFSSPKV 2005 Query 121 AVAACNAFLEANYPTVASYQITDEYDAYLDMVDGSESCLDRATFCPAKLRCYPKHHAYHQ 180 AV ACNA L+ N+PTVASY I EYDAYLDMVDG+ CLD A+FCPAKLR +PK H+Y + Sbjct 2006 AVEACNAMLKENFPTVASYCIIPEYDAYLDMVDGASCCLDTASFCPAKLRSFPKKHSYLE 2065 Query 181 PQVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVLNVECFKKFACNGEYWQE 240 P +RSAVPS QNTLQNVLAAATKRNCNVTQMRELP LDSA NVECFKK+ACN EYW+ Sbjct 2066 PTIRSAVPSAIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNNEYWET 2125 Query 241 FKDNPIRITTENITTYVTRLKGPKAAALFAKTHNLVPLQEVPMDRFVVDMKRDVKVTPGT 300 FK+NPIR+T EN+ Y+T+LKGPKAAALFAKTHNL LQ++PMDRFV+D+KRDVKVTPGT Sbjct 2126 FKENPIRLTEENVVNYITKLKGPKAAALFAKTHNLNMLQDIPMDRFVMDLKRDVKVTPGT 2185 Query 301 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLKAVLAPNIHTLFDMSAEDFDAIIAAH 360 KHTEERPKVQVIQAA+PLATA LCGIHRELVRRL AVL PNIHTLFDMSAEDFDAIIA H Sbjct 2186 KHTEERPKVQVIQAADPLATADLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEH 2245 Query 361 FQPGDAVLETDIASFDKSQddslaltalmlledlGVDQELLDLIEAAFGEITSVHLPTGT 420 FQPGD VLETDIASFDKS+DD++ALTALM+LEDLGVD ELL LIEAAFGEI+S+HLPT T Sbjct 2246 FQPGDCVLETDIASFDKSEDDAMALTALMILEDLGVDAELLTLIEAAFGEISSIHLPTKT 2305 Query 421 RFKFGAMMKSGMFLTLFVNTLLNIVIACRVLREKLTNSVCAAFIGDDNIVHGVRSDPLMA 480 +FKFGAMMKSGMFLTLFVNT++NIVIA RVLRE+LT S CAAFIGDDNIV GV+SD LMA Sbjct 2306 KFKFGAMMKSGMFLTLFVNTVINIVIASRVLRERLTGSPCAAFIGDDNIVKGVKSDKLMA 2365 Query 481 ERCASWVNMEVKIIDATMCEKPPYFCGGFILYDKVTGSACRVADPLKRLFKLGKPLPAGD 540 +RCA+W+NMEVKIIDA + EK PYFCGGFIL D VTG+ACRVADPLKRLFKLGKPL D Sbjct 2366 DRCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVADPLKRLFKLGKPLAVDD 2425 Query 541 TQDEDRRRALKDETDRWARVGLKSELEIALSSRYEVNGTGNIVRAMATLAKSLKNFKKLR 600 D+DRRRAL +E+ RW RVG+ EL A+ SRYE GT IV AM TLA S+K+F LR Sbjct 2426 EHDDDRRRALHEESTRWNRVGILPELCKAVESRYETVGTSIIVMAMTTLASSVKSFSYLR 2485 Query 601 GPIVHLYG 608 G + LYG Sbjct 2486 GAPITLYG 2493 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain CPA201)] Sequence ID: Q8V294.3 Length: 2497 Range 1: 1891 to 2497 Score:850 bits(2197), Expect:0.0, Method:Compositional matrix adjust., Identities:432/608(71%), Positives:503/608(82%), Gaps:1/608(0%) Query 1 YIFSSDTGPGHLQQKSVRQHALPCEMLYVHEEERTYPPALDEAREKLLQAKMQMAPTEAN 60 YIFSSDTG GHLQQKSVRQ L +L E E +Y P LD +E++L+ K+Q+ PT+AN Sbjct 1891 YIFSSDTGQGHLQQKSVRQTVLSEVVLERTELEISYAPRLDLNKEEILRKKLQLNPTQAN 1950 Query 61 KSRYQSRKVENMKAVIIDRLKDGARTYLTEQSEKIPTYVSKYPRPVYSPSVEDSLQNPEV 120 +SRYQSR+VENMKA+ R+ G YL + K+ Y + +P P+YS SV + +P+V Sbjct 1951 RSRYQSRRVENMKAITTKRILQGLGHYLKSEG-KVECYRTLHPVPLYSASVNRAFSSPKV 2009 Query 121 AVAACNAFLEANYPTVASYQITDEYDAYLDMVDGSESCLDRATFCPAKLRCYPKHHAYHQ 180 AV ACN L+ N+PTVASY I EYDAYLDMVDG+ CLD A+FCPAKLR +PK HAY + Sbjct 2010 AVEACNVVLKENFPTVASYCIIPEYDAYLDMVDGASCCLDTASFCPAKLRSFPKKHAYLE 2069 Query 181 PQVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVLNVECFKKFACNGEYWQE 240 P +RSAVPS QNTLQNVLAAATKRNCNVTQMRELP LDSA NVECFKK+ACN EYW+ Sbjct 2070 PTIRSAVPSAIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNNEYWET 2129 Query 241 FKDNPIRITTENITTYVTRLKGPKAAALFAKTHNLVPLQEVPMDRFVVDMKRDVKVTPGT 300 +K NPIR+T EN+ Y+T+LKGPKAAAL+AKTHNL LQ++PMDRF++D+KRDVKVTPGT Sbjct 2130 YKKNPIRLTEENVVNYITKLKGPKAAALYAKTHNLDMLQDIPMDRFIMDLKRDVKVTPGT 2189 Query 301 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLKAVLAPNIHTLFDMSAEDFDAIIAAH 360 KHTEERPKVQVIQAA+PLATAYLCGIHRELVRRL AVL PNIHTLFDMSAEDFDAIIA H Sbjct 2190 KHTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEH 2249 Query 361 FQPGDAVLETDIASFDKSQddslaltalmlledlGVDQELLDLIEAAFGEITSVHLPTGT 420 FQPGD VLETDIASFDKS+DD++ALTALM+LEDLGVD ELL LIEAAFGEI+S+HLPT T Sbjct 2250 FQPGDWVLETDIASFDKSEDDAMALTALMILEDLGVDPELLTLIEAAFGEISSIHLPTKT 2309 Query 421 RFKFGAMMKSGMFLTLFVNTLLNIVIACRVLREKLTNSVCAAFIGDDNIVHGVRSDPLMA 480 +F+FGAMMKSGMFLTLFVNT++N+VIA RVLRE+LTNS CAAFIGDDNIV GV+SD LMA Sbjct 2310 KFRFGAMMKSGMFLTLFVNTVINMVIASRVLRERLTNSPCAAFIGDDNIVKGVKSDKLMA 2369 Query 481 ERCASWVNMEVKIIDATMCEKPPYFCGGFILYDKVTGSACRVADPLKRLFKLGKPLPAGD 540 +RCA+W+NMEVKIIDA + EK PYFCGGFIL D VTG+ACRVADPLKRLFKLGKPL D Sbjct 2370 DRCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVADPLKRLFKLGKPLAVDD 2429 Query 541 TQDEDRRRALKDETDRWARVGLKSELEIALSSRYEVNGTGNIVRAMATLAKSLKNFKKLR 600 D+DRRRAL++E+ RW RVG+ SEL A+ SRYE GT I+ AM TLA S+++F LR Sbjct 2430 EHDDDRRRALQEESARWNRVGIFSELCKAVESRYETVGTAVIIMAMTTLASSVESFSCLR 2489 Query 601 GPIVHLYG 608 G + LYG Sbjct 2490 GAPIALYG 2497 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain Mena II)] Sequence ID: Q9WJC7.3 Length: 2499 Range 1: 1893 to 2499 Score:850 bits(2197), Expect:0.0, Method:Compositional matrix adjust., Identities:432/608(71%), Positives:502/608(82%), Gaps:1/608(0%) Query 1 YIFSSDTGPGHLQQKSVRQHALPCEMLYVHEEERTYPPALDEAREKLLQAKMQMAPTEAN 60 YIFSSDTG GHLQQKSVRQ L +L E E +Y P LD +E++L+ K+Q+ PT+AN Sbjct 1893 YIFSSDTGQGHLQQKSVRQTVLSEVVLERTELEISYAPRLDLNKEEILRKKLQLNPTQAN 1952 Query 61 KSRYQSRKVENMKAVIIDRLKDGARTYLTEQSEKIPTYVSKYPRPVYSPSVEDSLQNPEV 120 +SRYQSR+VENMKA+ R+ G YL + K+ Y + +P P+YS SV + +P+V Sbjct 1953 RSRYQSRRVENMKAITTKRILQGLGHYLKSEG-KVECYRTLHPVPLYSASVNRAFSSPKV 2011 Query 121 AVAACNAFLEANYPTVASYQITDEYDAYLDMVDGSESCLDRATFCPAKLRCYPKHHAYHQ 180 AV ACN L+ N+PTVASY I EYDAYLDMVDG+ CLD A+FCPAKLR +PK HAY + Sbjct 2012 AVEACNVVLKENFPTVASYCIIPEYDAYLDMVDGASCCLDTASFCPAKLRSFPKKHAYLE 2071 Query 181 PQVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVLNVECFKKFACNGEYWQE 240 P +RSAVPS QNTLQNVLAAATKRNCNVTQMRELP LDSA NVECFKK+ACN EYW+ Sbjct 2072 PTIRSAVPSAIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNNEYWET 2131 Query 241 FKDNPIRITTENITTYVTRLKGPKAAALFAKTHNLVPLQEVPMDRFVVDMKRDVKVTPGT 300 +K NPIR+T EN+ Y+T+LKGPKAAAL+AKTHNL LQ++PMDRF++D+KRDVKVTPGT Sbjct 2132 YKKNPIRLTEENVVNYITKLKGPKAAALYAKTHNLDMLQDIPMDRFIMDLKRDVKVTPGT 2191 Query 301 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLKAVLAPNIHTLFDMSAEDFDAIIAAH 360 KHTEERPKVQVIQAA+PLATAYLCGIHRELVRRL AVL PNIHTLFDMSAEDFDAIIA H Sbjct 2192 KHTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEH 2251 Query 361 FQPGDAVLETDIASFDKSQddslaltalmlledlGVDQELLDLIEAAFGEITSVHLPTGT 420 FQPGD VLETDIASFDKS+DD++ALTALM+LEDLGVD ELL LIEAAFGEI+S+HLPT T Sbjct 2252 FQPGDWVLETDIASFDKSEDDAMALTALMILEDLGVDPELLTLIEAAFGEISSIHLPTKT 2311 Query 421 RFKFGAMMKSGMFLTLFVNTLLNIVIACRVLREKLTNSVCAAFIGDDNIVHGVRSDPLMA 480 +F+FGAMMKSGMFLTLFVNT++N+VIA RVLRE+LTNS CAAFIGDDNIV GV+SD LMA Sbjct 2312 KFRFGAMMKSGMFLTLFVNTVINMVIASRVLRERLTNSPCAAFIGDDNIVKGVKSDKLMA 2371 Query 481 ERCASWVNMEVKIIDATMCEKPPYFCGGFILYDKVTGSACRVADPLKRLFKLGKPLPAGD 540 +RCA+W+NMEVKIIDA + EK PYFCGGFIL D VTG+ACRVADPLKRLFKLGKPL D Sbjct 2372 DRCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVADPLKRLFKLGKPLAVDD 2431 Query 541 TQDEDRRRALKDETDRWARVGLKSELEIALSSRYEVNGTGNIVRAMATLAKSLKNFKKLR 600 D+DRRRAL++E+ RW RVG+ SEL A+ SRYE GT I+ AM TLA S+ +F LR Sbjct 2432 EHDDDRRRALQEESARWNRVGIFSELCKAVESRYETVGTAVIIMAMTTLASSVGSFGYLR 2491 Query 601 GPIVHLYG 608 G + LYG Sbjct 2492 GAPISLYG 2499 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Sleeping disease virus] Sequence ID: Q8QL53.1 Length: 2593 Range 1: 1985 to 2592 Score:663 bits(1710), Expect:0.0, Method:Compositional matrix adjust., Identities:344/612(56%), Positives:439/612(71%), Gaps:9/612(1%) Query 1 YIFSSDTGPGHLQQKSVRQHALPCEMLYVH---EEERTYPPALDEAREKLLQAKMQMAPT 57 YIFSSD G HL Q + + + ++ + P L E +++L QM PT Sbjct 1985 YIFSSDQGTAHLSQHNTQTNNTTEVLMRTSVLPSNDHGTPDLLAEMKKRL---AYQMRPT 2041 Query 58 EANKSRYQSRKVENMKAVIIDRLKDGARTYLTEQSEKIPTYVSKYPRPVYSPSVEDSLQN 117 + NKSRY S KV NMK I+ L+ GA YL EQ +P + + +P+P YS + ++ Sbjct 2042 QKNKSRYLSAKVHNMKHKIVQCLQRGAGHYLREQ-HALPLWKNTFPKPRYSDACVVKFES 2100 Query 118 PEVAVAACNAFLEANYPTVASYQITDEYDAYLDMVDGSESCLDRATFCPAKLRCYPKHHA 177 A+ A N F+ NYPT++S+ +TD+YDAYLDMVDG LD TF PAK+R PK Sbjct 2101 VNTAIVAANMFIGCNYPTLSSFGVTDKYDAYLDMVDGLNCNLDTVTFEPAKVRSLPKKSK 2160 Query 178 YHQPQVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVLNVECFKKFAC-NGE 236 Y+QP ++S VP P +TLQ++L AATKRNCNVTQMRELPT+DSA +NVE FKKFAC + + Sbjct 2161 YNQPLIQSQVPGPMASTLQSILMAATKRNCNVTQMRELPTMDSAAMNVEAFKKFACKDTD 2220 Query 237 YWQEFKDNPIRITTENITTYVTRLKGPKAAALFAKTHNLVP-LQEVPMDRFVVDMKRDVK 295 W EF + P+R++ I YV L+G KA + ++ P L EV MDRF +DMKRDVK Sbjct 2221 LWTEFAEKPVRLSPGQIEEYVFHLQGAKANVMHSRVEAACPDLSEVAMDRFTLDMKRDVK 2280 Query 296 VTPGTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLKAVLAPNIHTLFDMSAEDFDA 355 VTPGTKH EERPKVQVIQAA+P+ATAYLC IHRELVRRLKAVL P+IH LFDMS+EDFDA Sbjct 2281 VTPGTKHVEERPKVQVIQAADPMATAYLCAIHRELVRRLKAVLKPSIHVLFDMSSEDFDA 2340 Query 356 IIAAHFQPGDAVLETDIASFDKSQddslaltalmlledlGVDQELLDLIEAAFGEITSVH 415 I+ + GD VLETDI+SFDKSQD ++A+TALMLLEDLGV+++LL LIEA+FG+ITSVH Sbjct 2341 IVGHGMKLGDKVLETDISSFDKSQDQAMAVTALMLLEDLGVEEDLLTLIEASFGDITSVH 2400 Query 416 LPTGTRFKFGAMMKSGMFLTLFVNTLLNIVIACRVLREKLTNSVCAAFIGDDNIVHGVRS 475 LPTGTRF+FG+MMKSG+FLTLFVNTLLNI IA RVLRE+L ++ CAAFIGDDN++ GV S Sbjct 2401 LPTGTRFQFGSMMKSGLFLTLFVNTLLNITIAARVLREQLADTRCAAFIGDDNVITGVVS 2460 Query 476 DPLMAERCASWVNMEVKIIDATMCEKPPYFCGGFILYDKVTGSACRVADPLKRLFKLGKP 535 D +M RCASW+NMEVKI++ + ++ PYFCGGF+L D VTG+ RV+DP+KRL K+GKP Sbjct 2461 DDMMVARCASWLNMEVKIMEMEIGDRSPYFCGGFLLLDTVTGTVSRVSDPVKRLMKMGKP 2520 Query 536 LPAGDTQDEDRRRALKDETDRWARVGLKSELEIALSSRYEVNGTGNIVRAMATLAKSLKN 595 D DR RAL++E + W RVG++ L++A ++RY VN AMATLA+ L++ Sbjct 2521 ALNDPETDVDRCRALREEVESWYRVGIQWPLQVAAATRYGVNHLPLATMAMATLAQDLRS 2580 Query 596 FKKLRGPIVHLY 607 + RG V LY Sbjct 2581 YLGARGEYVSLY 2592 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Salmon pancreas disease virus] Sequence ID: Q8JJX1.1 Length: 2601 Range 1: 1993 to 2600 Score:657 bits(1694), Expect:0.0, Method:Compositional matrix adjust., Identities:342/612(56%), Positives:433/612(70%), Gaps:9/612(1%) Query 1 YIFSSDTGPGHLQQKSVRQHALPCEMLYVH---EEERTYPPALDEAREKLLQAKMQMAPT 57 YIFSSD G HL Q + + + ++ + P E R++L QM PT Sbjct 1993 YIFSSDQGTAHLSQHNTQTNNTTEVLMRTSVLPSNDHGTPDLPAETRKRL---AYQMRPT 2049 Query 58 EANKSRYQSRKVENMKAVIIDRLKDGARTYLTEQSEKIPTYVSKYPRPVYSPSVEDSLQN 117 + NKSRY S KV NMK I+ L+ GA YL EQ +P + + +P+P YS + ++ Sbjct 2050 QKNKSRYLSAKVHNMKHKIVRCLQRGAGHYLREQ-HALPLWKNTFPKPRYSDACVVKFES 2108 Query 118 PEVAVAACNAFLEANYPTVASYQITDEYDAYLDMVDGSESCLDRATFCPAKLRCYPKHHA 177 A+ A N F+ NYPT++S+ ITD+YDAYLDMVDG LD TF PAK+R PK Sbjct 2109 VNTAIVAANMFIGCNYPTLSSFGITDKYDAYLDMVDGLNCNLDTVTFDPAKVRSLPKKSE 2168 Query 178 YHQPQVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVLNVECFKKFAC-NGE 236 Y+QP ++S VP P +TLQ++L AATKRNCNVTQMRELPT+DSA +NVE FK FAC + + Sbjct 2169 YNQPLIQSQVPGPMTSTLQSILMAATKRNCNVTQMRELPTMDSAAMNVEAFKSFACKDTD 2228 Query 237 YWQEFKDNPIRITTENITTYVTRLKGPKAAALFAKTHNLVP-LQEVPMDRFVVDMKRDVK 295 W EF + P+R++ I YV L+G KA + ++ + P L EV MDRF +DMKRDVK Sbjct 2229 LWTEFAEKPVRLSPGQIEEYVFHLQGAKANVMHSRVEAVCPDLSEVAMDRFTLDMKRDVK 2288 Query 296 VTPGTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLKAVLAPNIHTLFDMSAEDFDA 355 VTPGTKH EERPKVQ IQAA+P+ATAYLC IHRELVRRLKAVL P+IH LFDMS+EDFDA Sbjct 2289 VTPGTKHVEERPKVQEIQAADPMATAYLCAIHRELVRRLKAVLKPSIHVLFDMSSEDFDA 2348 Query 356 IIAAHFQPGDAVLETDIASFDKSQddslaltalmlledlGVDQELLDLIEAAFGEITSVH 415 I+ + GD VLETDI+SFDKSQD ++A+TALMLL DLGV+++LL LIEA+FG+ITS H Sbjct 2349 IVGHGMKLGDKVLETDISSFDKSQDQAMAVTALMLLRDLGVEEDLLTLIEASFGDITSAH 2408 Query 416 LPTGTRFKFGAMMKSGMFLTLFVNTLLNIVIACRVLREKLTNSVCAAFIGDDNIVHGVRS 475 LPTGTRF+FG+MMKSG+FLTLFVNTLLNI IA RVLRE+L ++ CAAFIGDDN++ GV S Sbjct 2409 LPTGTRFQFGSMMKSGLFLTLFVNTLLNITIAARVLREQLADTRCAAFIGDDNVITGVVS 2468 Query 476 DPLMAERCASWVNMEVKIIDATMCEKPPYFCGGFILYDKVTGSACRVADPLKRLFKLGKP 535 D +M RCASW+NMEVKI+D + PYFCGGF+L D VTG+ RV+DP+KRL K+GKP Sbjct 2469 DDMMVARCASWLNMEVKIMDMEIGNMSPYFCGGFLLLDTVTGTVSRVSDPVKRLMKMGKP 2528 Query 536 LPAGDTQDEDRRRALKDETDRWARVGLKSELEIALSSRYEVNGTGNIVRAMATLAKSLKN 595 D DR RAL++E + W RVG++ L++A ++RY VN AMATLA+ L++ Sbjct 2529 ALNDPETDVDRCRALREEVESWYRVGIQWPLQVAAATRYGVNHLPLATMAMATLAQDLRS 2588 Query 596 FKKLRGPIVHLY 607 + RG V LY Sbjct 2589 YLGARGEYVSLY 2600 >RecName: Full=Replicase large subunit; AltName: Full=182 kDa protein; Contains: RecName: Full=Replicase small subunit; AltName: Full=125 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Youcai mosaic virus] Sequence ID: Q66220.2 Length: 1597 Range 1: 1181 to 1577 Score:70.9 bits(172), Expect:2e-11, Method:Compositional matrix adjust., Identities:101/417(24%), Positives:168/417(40%), Gaps:30/417(7%) Query 177 AYHQPQVRSAVPSPFQNTLQNVLAAATKRNCNVTQMR-ELPTLDSAVLNVECFKKFACNG 235 + +P++R+A P L L A KRN N + + D+A L VE F + Sbjct 1181 VFMKPKLRTAAEMPRTAGLLENLVAMIKRNMNAPDLTGTIDIEDTASLVVEKF----WDA 1236 Query 236 EYWQEFKD-NPIRITTENITTYVTRLKGPKAAALFAKTHNLVPLQEVPMDRFVVDMKRDV 294 +EF + + +T E+ + ++++ + L N V L V D + +K Sbjct 1237 YVVKEFSGTDGMAMTRESFSRWLSKQESSTVGQL--ADFNFVDLPAV--DEYKHMIKSQP 1292 Query 295 KVTPGTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLKAVLAPNIHTLFDMSAEDFD 354 K +E P +Q I A + EL R L + + + Sbjct 1293 KQKLDLSIQDEYPALQTIVYHSKKINAIFGPMFSELTRMLLETIDTSKFLFYTRKTP--- 1349 Query 355 AIIAAHFQPGDA-----VLETDIASFDKSQddslaltalmlledlGVDQELLDLIEAAFG 409 I F D+ +LE DI+ +DKSQ++ + E LG+D L ++ Sbjct 1350 TQIEEFFSDLDSSQAMEILELDISKYDKSQNEFHCAVEYKIWEKLGIDDWLAEVWRQGHR 1409 Query 410 EITSVHLPTGTRFKFGAMMKSGMFLTLFVNTLLNIVIACRVLREKLTNSVCAAFIGDDNI 469 + T G + KSG T NT+ I+ AC + + AAF GDD++ Sbjct 1410 KTTLKDYTAGIKTCLWYQRKSGDVTTFIGNTI--IIAACLSSMIPMDKVIKAAFCGDDSL 1467 Query 470 VH---GVRSDPLMAERCASWVNMEVKIIDATMCEKPPYFCGGFILYDKVTGSACRVADPL 526 ++ G+ + A +W N E K+ +K YFCG ++++ A DPL Sbjct 1468 IYIPKGLDLPDIQAGANLTW-NFEAKLFR----KKYGYFCGRYVIHHD--RGAIVYYDPL 1520 Query 527 KRLFKLGKPLPAGDTQDEDRRRALKDETDRWARVGLKSELEIALSSRYEVNGTGNIV 583 K + KLG + E+ RR+L D T S+L+ A++ ++ G V Sbjct 1521 KLISKLGCKHIRDEVHLEELRRSLCDVTSNLNNCAYFSQLDEAVAEVHKTAVGGAFV 1577 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Turnip vein-clearing virus] Sequence ID: Q88920.1 Length: 1601 Range 1: 1186 to 1596 Score:70.5 bits(171), Expect:3e-11, Method:Compositional matrix adjust., Identities:102/437(23%), Positives:176/437(40%), Gaps:40/437(9%) Query 178 YHQPQVRSAVPSPFQNTLQNVLAAATKRNCNVTQMR-ELPTLDSAVLNVECFKKFACNGE 236 + +P++R+A P L L A KRN N + + D+A L VE + Sbjct 1186 FLKPKIRTAAEMPRTAGLLENLVAMIKRNMNAPDLTGTIDIEDTASLVVE---------K 1236 Query 237 YWQEFKD------NPIRITTENITTYVTRLKGPKAAALFAKTHNLVPLQEVPMDRFVVDM 290 +W + D N + +T E+ + ++++ + L N V L V D + + Sbjct 1237 FWDSYVDKEFSGTNEMTMTRESFSRWLSKQESSTVGQL--ADFNFVDLPAV--DEYKHMI 1292 Query 291 KRDVKVTPGTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLKAVLAPNIHTLFDMSA 350 K K +E P +Q I A + EL R L + + + Sbjct 1293 KSQPKQKLDLSIQDEYPALQTIVYHSKKINAIFGPMFSELTRMLLERIDSSKFLFYTRKT 1352 Query 351 ----EDFDAIIAAHFQPGDAVLETDIASFDKSQddslaltalmlledlGVDQELLDLIEA 406 EDF + + + +LE DI+ +DKSQ++ + E LG+D+ L ++ + Sbjct 1353 PAQIEDFFSDLDS--TQAMEILELDISKYDKSQNEFHCAVEYKIWEKLGIDEWLAEVWKQ 1410 Query 407 AFGEITSVHLPTGTRFKFGAMMKSGMFLTLFVNTLLNIVIACRVLREKLTNSVCAAFIGD 466 + T G + KSG T NT+ I+ AC + + AAF GD Sbjct 1411 GHRKTTLKDYTAGVKTCLWYQRKSGDVTTFIGNTI--IIAACLSSMIPMDKVIKAAFCGD 1468 Query 467 DNIVH---GVRSDPLMAERCASWVNMEVKIIDATMCEKPPYFCGGFILYDKVTGSACRVA 523 D++++ G+ + A W N E K+ +K YFCG ++++ A Sbjct 1469 DSLIYIPKGLDLPDIQAGANLMW-NFEAKLFR----KKYGYFCGRYVIHHD--RGAIVYY 1521 Query 524 DPLKRLFKLGKPLPAGDTQDEDRRRALKDETDRWARVGLKSELEIALSSRYEVNGTGNIV 583 DPLK + KLG E+ R +L D S+L+ A++ ++ G+ Sbjct 1522 DPLKLISKLGCKHIRDVVHLEELRESLCDVASNLNNCAYFSQLDEAVAEVHKTAVGGSF- 1580 Query 584 RAMATLAKSLKNFKKLR 600 A ++ K L + + R Sbjct 1581 -AFCSIIKYLSDKRLFR 1596 >RecName: Full=Replicase large subunit; AltName: Full=194 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=134 kDa protein; AltName: Full=Methyltransferase/RNA helicase [Tobacco rattle virus PpK20] Sequence ID: Q9J942.2 Length: 1707 Range 1: 1234 to 1675 Score:70.1 bits(170), Expect:4e-11, Method:Compositional matrix adjust., Identities:110/462(24%), Positives:185/462(40%), Gaps:28/462(6%) Query 146 DAYLDMVDGSESCLDRATFCPAKLR-CYPKHHAYHQPQVRSAVPSPFQNTLQNVLAAATK 204 D YL LD T + + + + +P +R+A+P + T L A K Sbjct 1234 DGYLVATTDCNLRLDNVTIKSGNWKDKFAEKETFLKPVIRTAMPDKRKTTQLESLLALQK 1293 Query 205 RNCNVTQMRELPTLDSAVLNVECFKKFACNGEYWQEFKDNPIRITTENITTYVTRLKGPK 264 RN ++E + + VL E KK + + +PI + + R + Sbjct 1294 RNQAAPDLQE--NVHATVLIEETMKKLKSVVYDVGKIRADPIVNRAQ-----MERWWRNQ 1346 Query 265 AAALFAK-THNLVPLQEVPMDRFVVDMKRDVKVTPGTKHTEERPKVQVIQAAEPLATAYL 323 + A+ AK ++ L E+ ++ +K DVK E +Q + E L + Sbjct 1347 STAVQAKVVADVRELHEIDYSSYMFMIKSDVKPKTDLTPQFEYSALQTVVYHEKLINSLF 1406 Query 324 CGIHRELVRRLKAVLAPNIHTLFD--MSAEDF-DAIIAAHFQPGDAVLETDIASFDKSQd 380 I +E+ R + P H +F+ M++ D D + + + +E D++ FDKS + Sbjct 1407 GPIFKEINERKLDAMQP--HFVFNTRMTSSDLNDRVKFLNTEAAYDFVEIDMSKFDKSAN 1464 Query 381 dslaltalmlledlGVDQELLDLIEAAFGEITSVHLPTGTRFKFGAMMKSGMFLTLFVNT 440 L + G+D+ L E + + T + G KSG T N+ Sbjct 1465 RFHLQLQLEIYRLFGLDEWAAFLWEVSHTQTTVRDIQNGMMAHIWYQQKSGDADTYNANS 1524 Query 441 LLNIVIACRVLRE-KLTNSVCAAFIGDDNIVHGVRSDPLM--AERCASWVNMEVKIIDAT 497 + C +L E L +V + GDD+++ R + + A+ N E KI Sbjct 1525 DRTL---CALLSELPLEKAVMVTYGGDDSLIAFPRGTQFVDPCPKLATKWNFECKIFKYD 1581 Query 498 MCEKPPYFCGGFILYDKVTGSACRVADPLKRLFKLGKPLPAGDTQDEDRRRALKDETDRW 557 + P FCG F+L K + V DP+K L KLGK + +L D Sbjct 1582 V----PMFCGKFLL--KTSSCYEFVPDPVKVLTKLGKKSIKDVQHLAEIYISLNDSNRAL 1635 Query 558 ARVGLKSELEIALSSRYEVNGTGNIVRAMATLAKSLKNFKKL 599 + S+L ++S RY G+ V A+ L K +K+F L Sbjct 1636 GNYMVVSKLSESVSDRYLYK--GDSVHALCALWKHIKSFTAL 1675 >RecName: Full=Replicase large subunit; AltName: Full=194 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=134 kDa protein; AltName: Full=Methyltransferase/RNA helicase [Tobacco rattle virus-SYM] Sequence ID: P05080.2 Length: 1707 Range 1: 1234 to 1675 Score:69.7 bits(169), Expect:5e-11, Method:Compositional matrix adjust., Identities:110/462(24%), Positives:185/462(40%), Gaps:28/462(6%) Query 146 DAYLDMVDGSESCLDRATFCPAKLR-CYPKHHAYHQPQVRSAVPSPFQNTLQNVLAAATK 204 D YL LD T + + + + +P +R+A+P + T L A K Sbjct 1234 DGYLVATTDCNLRLDNVTIKSGNWKDKFAEKETFLKPVIRTAMPDKRKTTQLESLLALQK 1293 Query 205 RNCNVTQMRELPTLDSAVLNVECFKKFACNGEYWQEFKDNPIRITTENITTYVTRLKGPK 264 RN ++E + + VL E KK + + +PI + + R + Sbjct 1294 RNQAAPDLQE--NVHATVLIEETMKKLKSVVYDVGKIRADPIVNRAQ-----MERWWRNQ 1346 Query 265 AAALFAK-THNLVPLQEVPMDRFVVDMKRDVKVTPGTKHTEERPKVQVIQAAEPLATAYL 323 + A+ AK ++ L E+ ++ +K DVK E +Q + E L + Sbjct 1347 STAVQAKVVADVRELHEIDYSSYMYMIKSDVKPKTDLTPQFEYSALQTVVYHEKLINSLF 1406 Query 324 CGIHRELVRRLKAVLAPNIHTLFD--MSAEDF-DAIIAAHFQPGDAVLETDIASFDKSQd 380 I +E+ R + P H +F+ M++ D D + + + +E D++ FDKS + Sbjct 1407 GPIFKEINERKLDAMQP--HFVFNTRMTSSDLNDRVKFLNTEAAYDFVEIDMSKFDKSAN 1464 Query 381 dslaltalmlledlGVDQELLDLIEAAFGEITSVHLPTGTRFKFGAMMKSGMFLTLFVNT 440 L + G+D+ L E + + T + G KSG T N+ Sbjct 1465 RFHLQLQLEIYRLFGLDEWAAFLWEVSHTQTTVRDIQNGMMAHIWYQQKSGDADTYNANS 1524 Query 441 LLNIVIACRVLRE-KLTNSVCAAFIGDDNIVHGVRSDPLM--AERCASWVNMEVKIIDAT 497 + C +L E L +V + GDD+++ R + + A+ N E KI Sbjct 1525 DRTL---CALLSELPLEKAVMVTYGGDDSLIAFPRGTQFVDPCPKLATKWNFECKIFKYD 1581 Query 498 MCEKPPYFCGGFILYDKVTGSACRVADPLKRLFKLGKPLPAGDTQDEDRRRALKDETDRW 557 + P FCG F+L K + V DP+K L KLGK + +L D Sbjct 1582 V----PMFCGKFLL--KTSSCYEFVPDPVKVLTKLGKKSIKDVQHLAEIYISLNDSNRAL 1635 Query 558 ARVGLKSELEIALSSRYEVNGTGNIVRAMATLAKSLKNFKKL 599 + S+L ++S RY G+ V A+ L K +K+F L Sbjct 1636 GNYMVVSKLSESVSDRYLYK--GDSVHALCALWKHIKSFTAL 1675 >RecName: Full=Replicase large subunit; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=Methyltransferase/RNA helicase [Peanut clump virus 87/TGTA2] Sequence ID: Q84687.2 Length: 1672 Range 1: 1227 to 1614 Score:68.9 bits(167), Expect:9e-11, Method:Compositional matrix adjust., Identities:95/415(23%), Positives:169/415(40%), Gaps:35/415(8%) Query 181 PQVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVLNVECFKKFACNGEYWQE 240 P++R+A+P Q + + A KRN +++E + ++ K F+C + Sbjct 1227 PKLRTAMPEKRQGSFAESILALRKRNMACPRLQE-SVNEHQIIEDTIAKAFSCY--FTDS 1283 Query 241 FKDNPIRITTENITTYVTRLKGPKAAALFAKTHNLVPLQEVPMDRFVVDMKRDVKVTPGT 300 F D IT E+ + + + A L ++ + + +K DVK Sbjct 1284 FVDQSPLITDESALRWWEKQSTTAKNQMLADWRT---LDQIDVCTYNFMIKNDVKPKLDL 1340 Query 301 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLKAVLAPNIHTLFDMSAEDFDAIIAAH 360 E +Q + E + + +E+ R+ + L PN+ M++E+ + A + Sbjct 1341 TPQSEYAALQTVVYPEKIVNGLFGPVIKEINERVLSALKPNVFVNTRMTSEEL-SRTAEY 1399 Query 361 FQPGD--AVLETDIASFDKSQddslaltalmlledlGVDQELLDLIEAAFGEITSVHLPT 418 PGD V+E D + +DKS+ + L E G++ + L E + + Sbjct 1400 LYPGDEFEVVEIDFSKYDKSKTSLHIRMVIKLYEQFGLNGYMKYLWEKSQTQTVVKDRNY 1459 Query 419 GTRFKFGAMMKSGMFLTLFVNTLLNIVIACRVLREKLTNSVCAAFIGDDNIV----HGVR 474 G KSG T NT ++ L + +V + F GDD+++ + Sbjct 1460 GVEAYILYQQKSGNCDTYGSNTYSSMFALLDCL--PMEKAVYSIFGGDDSLILFPKGTII 1517 Query 475 SDPLMAERCASWVNMEVKIIDATMCEKPPYFCGGFILYDKVTGSACRVADPLKRLFKLGK 534 +DP R AS N + K +M + P FCG F++ V G DP+K + KLG Sbjct 1518 NDP--CGRLASLWNFDCK----SMKFRVPAFCGKFLI--PVGGRYRFEPDPMKLITKLGN 1569 Query 535 PLPA--GDTQDEDRRRALKDETDRWARVGLKSELEIALSSRYEVNGTGNIVRAMA 587 A G T+ E R+ K L SE+ +++ Y+ ++ A+A Sbjct 1570 KTIAIEGKTKAEVRKNGSK----------LLSEIYVSICDNYKNYDDARVLDALA 1614 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Obuda pepper virus] Sequence ID: P90211.1 Length: 1616 Range 1: 1323 to 1597 Score:66.6 bits(161), Expect:4e-10, Method:Compositional matrix adjust., Identities:74/286(26%), Positives:125/286(43%), Gaps:18/286(6%) Query 305 ERPKVQVIQAAEPLATAYLCGIHRELVRRLKAVLAPNIHTLFDMSA----EDFDAIIAAH 360 E P +Q I A I EL R++ + + + + F E+F + + AH Sbjct 1323 EYPSLQTIVYHSKKINALFGPIFSELTRQMLSAIDTSRYLFFTRKTPEQIEEFFSDLDAH 1382 Query 361 FQPGDAVLETDIASFDKSQddslaltalmlledlGVDQELLDLIEAAFGEITSVHLPTGT 420 QP + VLE D++ +DKSQ++ + + LG+D+ L ++ + + T G Sbjct 1383 -QPME-VLELDVSKYDKSQNEFHCAVEYEIWKRLGIDEFLAEVWKQGHRKTTLKDYTAGI 1440 Query 421 RFKFGAMMKSGMFLTLFVNTLLNIVIACRVLREKLTNSVCAAFIGDDNIVHGVRSDPL-M 479 + KSG T NT+ I+ AC + + AAF GDD++V+ + L Sbjct 1441 KTCLWYQRKSGDVTTFIGNTV--IIAACMASMLPMEKVIKAAFCGDDSLVYLPKGCELPN 1498 Query 480 AERCAS--WVNMEVKIIDATMCEKPPYFCGGFILYDKVTGSACRVADPLKRLFKLGKPLP 537 + CA+ W N E K+ T YFCG ++++ A DPLK + KLG Sbjct 1499 IQSCANLMW-NFEAKLFKKTY----GYFCGRYVIHHD--RGAIVYVDPLKIISKLGAKHI 1551 Query 538 AGDTQDEDRRRALKDETDRWARVGLKSELEIALSSRYEVNGTGNIV 583 E+ R +L D + ++L+ A+ ++ G+ V Sbjct 1552 TDKEHLEEFRISLADVSKSLNNCAYYAQLDEAVREVHKTAPPGSFV 1597 >RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a [Pelargonium zonate spot virus isolate tomato] Sequence ID: Q9DUT2.1 Length: 687 Range 1: 202 to 660 Score:63.2 bits(152), Expect:4e-09, Method:Compositional matrix adjust., Identities:120/514(23%), Positives:206/514(40%), Gaps:89/514(17%) Query 120 VAVAACNAFLEANYPTVASYQITDEYDAYLDMVDGSESCLDRATFCPAKLR-----CYPK 174 V + + + N P+ A + D + Y V+GS+ +D F +LR C Sbjct 202 VNLESLQGAINMNLPSHAYFD--DTWHQYF--VEGSKLDVD---FDNIRLRQSEVFCDRD 254 Query 175 HHAYHQPQVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVLNVECFKKFACN 234 Y+QP++ + S T + L A KRN +V ++ + ++D L+ KKF Sbjct 255 LDRYYQPELFAGASSRRIGTQKEALVAIRKRNADVPELAD--SVDVERLSESVAKKFL-- 310 Query 235 GEYWQEFKDNPIRITTENITTYVTRLKGPKAAALFAKTHNLVPLQEVPMDRFVVDMKRDV 294 Y + K P+ E + Y + K HNL R+ +K DV Sbjct 311 SSYVCDLK--PVVGVMEKMRAYHQKWGDKIDPMFLLKEHNL--------QRYEHMIKTDV 360 Query 295 KVTPGTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLKAVLAPNIHTLFDMSAEDFD 354 K P H+ ++ A P AT G + + A +P+ LFD + D Sbjct 361 K--PTVAHSMH------VERAIP-ATITFHG------KSICAGFSPSFTALFDEFQKSLD 405 Query 355 AIIAAHFQPGDAV-----------LETDIASFDKSQddslaltalmlledlGVDQELLDL 403 + P + LE D++ FDKSQ +L +G+ L + Sbjct 406 ERVVIPSGPISTIEMDFDIRNKYYLEVDLSKFDKSQGLLHLEFQRKILCKIGLPAHLANW 465 Query 404 IEAAFGEITSVHLPTG-TRFKFGAMMKSGMFLTLFVNTLLNIVI--ACRVLR--EKLTNS 458 F + + P F ++G T F NTL+ + + C R EK+ Sbjct 466 W-CDFHYKSFISDPRAKVSFNCSFQRRTGDAFTFFGNTLVTMAMFSFCYDTRQFEKML-- 522 Query 459 VCAAFIGDDNIVHGVRSDPLM--AERCASWVNMEVKIIDATMCEKPPYFCGGFILYDKVT 516 F GDD++ + S P++ ++ S NME KI+D + PY C F++ D++ Sbjct 523 ----FAGDDSL--AISSSPIVGCSDYFVSLFNMEAKIMDPGV----PYICSKFLVSDEL- 571 Query 517 GSACRVADPLKRLFKLGKPLPAGDTQD---------EDRRRALKDETDRWARVGLKSELE 567 G DP++ +LGK + D D +DR +++ ++ + +L+ Sbjct 572 GRCFSAPDPIREFQRLGKKKISADNDDALFEQYVGFKDRMSHMRNFSEYEIQ-----QLK 626 Query 568 IALSSRYEVNG--TGNIVRAMATLAKSLKNFKKL 599 I + +Y+ +G + + A + + KNFK L Sbjct 627 IFFNLKYKQSGEVIEDYMGACMFYSDNFKNFKTL 660 >RecName: Full=RNA replication protein; Includes: RecName: Full=Methyltransferase; Includes: RecName: Full=Helicase; Includes: RecName: Full=RNA-directed RNA polymerase [Citrus leprosis virus C BRA/Cordeiropolis] Sequence ID: Q1KZ59.1 Length: 2512 Range 1: 2084 to 2494 Score:62.8 bits(151), Expect:7e-09, Method:Compositional matrix adjust., Identities:101/429(24%), Positives:167/429(38%), Gaps:28/429(6%) Query 181 PQVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVLNVECFKKF--ACNGEYW 238 P++ P + L L A KRN NV Q+ + V+ + F + Y+ Sbjct 2084 PRLSFCSPVVRKACLVESLIAVQKRNRNVPQLSS--EVSPYVMADQLFDSLRSLLDERYY 2141 Query 239 QEFKDNPIRITTENITTYVTRLKGPKAAALFAKTHNLVPLQEVPMDRFVVDMKRDVKVTP 298 QE P + ++ KG + + + ++R+ + K K T Sbjct 2142 QEVHYGP-----AELAAWLNDQKGSVVDEVIGE----YCIYSTAVERYQLITKNSPKPTL 2192 Query 299 GTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLKAVL--APNIHTLFDMSAEDFDAI 356 + E QV+ A C I R + ++++L NI DM + F + Sbjct 2193 SDEAYMEFAAPQVVLHQTKDINAVFCVIWRGIKTVVQSMLRHHNNIFMFADMDPDSFADL 2252 Query 357 ----IAAHFQPGDAVLETDIASFDKSQddslaltalmlledlGVDQELLDLIEAAFGEIT 412 ++ Q LE DI +DKSQD + L LL GV +EL+ + + E Sbjct 2253 LTEKVSTKVQETFDSLEIDIKKYDKSQDLKVLLLECKLLRYFGVSEELVIIWFKSHVESI 2312 Query 413 SVHLPTGTRFKFGAMMKSGMFLTLFVNTLLNIVIACRVLREKLTNSVCAAFIGDDNIVHG 472 +G +FK +SG T NTL I + R L A F GDD+++ G Sbjct 2313 VKDRRSGLKFKVQVQRRSGDGGTFIGNTLFLIALCARNF--DLRKLKLAVFSGDDSLLVG 2370 Query 473 VRSD-PLMAERCASWVNMEVKIIDATMCEKPPYFCGGFILYDKVTGSACRVADPLKRLFK 531 + D ++ + N++VK K +FC F++ V + DP+K + Sbjct 2371 EKRDLQCDSQNFSDLFNLDVKFFPNF---KYYHFCSKFLI--AVEDRWYFIPDPVKLCIR 2425 Query 532 LGKPLPAGDTQDEDRRRALKDETDRWARVGLKSELEIALSSRYEVN-GTGNIVRAMATLA 590 L + E+ R +LKD T + + EL A+ RY V + R + ++ Sbjct 2426 LARLDLVNWGHIEEYRISLKDTTKYYCDDSIVRELSKAVCDRYPVAVDPAEVFRVVCSIV 2485 Query 591 KSLKNFKKL 599 S F+ L Sbjct 2486 SSKDEFRLL 2494 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Tomato brown rugose fruit virus Tom1-Jo] Sequence ID: A0A0S2T050.1 Length: 1615 Range 1: 1198 to 1592 Score:62.0 bits(149), Expect:1e-08, Method:Compositional matrix adjust., Identities:92/415(22%), Positives:165/415(39%), Gaps:32/415(7%) Query 181 PQVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVLNVECFKKFACNGEYWQE 240 P VR+A P Q L L A KRN N ++ S ++++E + +++ Sbjct 1198 PMVRTAAEMPRQTGLLENLVAMIKRNFNSPEL-------SGIIDIENTASLVVD-KFFDS 1249 Query 241 FKDNPIRITTENITTY----VTRLKGPKAAALFAKTHNLVPLQEVPMDRFVVDMKRDVKV 296 + R +N++ + + R + + + + +D++ +K K Sbjct 1250 YLLKEKRKPNKNVSLFCRESLNRWLEKQEQVTIGQLADFDFVDLPAVDQYRHMIKAQPKQ 1309 Query 297 TPGTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLKAVLAPNIHTLFDMSA----ED 352 T E P +Q I A + EL R++ + + F ED Sbjct 1310 KLDTSIQSEYPALQTIVYHSKKINAIFGPLFSELTRQMLESIDSSKFLFFTRKTPAQIED 1369 Query 353 FDAIIAAHFQPGDAVLETDIASFDKSQddslaltalmlledlGVDQELLDLIEAAFGEIT 412 F + +H P D +LE DI+ +DKSQ++ + LG++ L ++ + + T Sbjct 1370 FFGDLDSHV-PMD-ILELDISKYDKSQNEFHCAVEYEIWRRLGLEDFLGEVWKQGHRKTT 1427 Query 413 SVHLPTGTRFKFGAMMKSGMFLTLFVNTLLNIVIACRVLREKLTNSVCAAFIGDDNIVH- 471 G + KSG T NT+ I+ AC + + AF GDD++++ Sbjct 1428 LKDYTAGIKTCLWYQRKSGDVTTFIGNTV--IIAACLASMLPMEKIIKGAFCGDDSLLYF 1485 Query 472 --GVRSDPLMAERCASWVNMEVKIIDATMCEKPPYFCGGFILYDKVTGSACRV-ADPLKR 528 G + W N E K+ ++ YFCG ++++ C V DPLK Sbjct 1486 PKGCEFPDIQHTANLMW-NFEAKLFR----KQYGYFCGRYVIHHD---RGCIVYYDPLKL 1537 Query 529 LFKLGKPLPAGDTQDEDRRRALKDETDRWARVGLKSELEIALSSRYEVNGTGNIV 583 + KLG E+ RR+L D + ++L+ A+S ++ G+ V Sbjct 1538 ISKLGAKHIKDWDHLEEFRRSLCDVANSLNNCAYYTQLDDAVSEVHKTAPPGSFV 1592 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Tobacco mosaic virus strain Rakkyo] Sequence ID: Q98745.1 Length: 1616 Range 1: 1198 to 1561 Score:60.8 bits(146), Expect:3e-08, Method:Compositional matrix adjust., Identities:90/384(23%), Positives:152/384(39%), Gaps:32/384(8%) Query 181 PQVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVLNVECFKKFACNGEYWQE 240 P VR+A P Q L L A KRN N ++ S ++++E + +++ Sbjct 1198 PMVRTAAEMPRQTGLLENLVAMIKRNFNAPEL-------SGIIDIENTASLVVD-KFFDS 1249 Query 241 FKDNPIRITTENITTY----VTRLKGPKAAALFAKTHNLVPLQEVPMDRFVVDMKRDVKV 296 + R +N++ + + R + + + + +D++ +K K Sbjct 1250 YLLKEKRKPNKNVSLFSRESLNRWLEKQERVTIGQLADFDFVDLPAVDQYRHMIKAQPKQ 1309 Query 297 TPGTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLKAVLAPNIHTLFDMSA----ED 352 T E P +Q I A + EL R+L + + F ED Sbjct 1310 KLDTSIQTEYPALQTIVYHSKKINAIFGPLFSELTRQLLDSVDSSRFLFFTRKTPAQIED 1369 Query 353 FDAIIAAHFQPGDAVLETDIASFDKSQddslaltalmlledlGVDQELLDLIEAAFGEIT 412 F + +H P D VLE DI+ +DKSQ++ + LG + L ++ + + T Sbjct 1370 FFGDLDSHV-PMD-VLELDISKYDKSQNEFHCAVEYEIWRRLGFEDFLGEVWKQGHRKTT 1427 Query 413 SVHLPTGTRFKFGAMMKSGMFLTLFVNTLLNIVIACRVLREKLTNSVCAAFIGDDNIVH- 471 G + KSG T NT+ I+ AC ++ + AF GDD++++ Sbjct 1428 LKDYTAGIKTCIWYQRKSGDVTTFIGNTV--IIAACLASMLRMEKIIKGAFCGDDSLLYF 1485 Query 472 --GVRSDPLMAERCASWVNMEVKIIDATMCEKPPYFCGGFILYDKVTGSACRV-ADPLKR 528 G + W N E K+ ++ YFCG +I++ C V DPLK Sbjct 1486 PKGCEFPDIQHSVNLMW-NFEAKLFK----KQYGYFCGRYIIHHD---RGCIVYYDPLKL 1537 Query 529 LFKLGKPLPAGDTQDEDRRRALKD 552 + KLG E+ RR+L D Sbjct 1538 ISKLGAKHIKDWEHLEEFRRSLCD 1561 >RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a [Alfalfa mosaic virus (strain 425 / isolate Leiden)] Sequence ID: P03593.2 Length: 790 Range 1: 289 to 702 Score:60.1 bits(144), Expect:4e-08, Method:Compositional matrix adjust., Identities:103/453(23%), Positives:182/453(40%), Gaps:64/453(14%) Query 117 NPEVAVAACNAFLEANYPTVASYQITDEYDAYLDMVDGSESCLDRATFCPAKLRCYPKHH 176 +PEV A + FL ++ I D+Y + + V+ S+ LD C L + Sbjct 289 SPEVIQNALDEFLPLHH------SIDDKY--FQEWVETSDKSLDVDP-CRIDLSVFNNWQ 339 Query 177 AY---HQPQVRSAVPSPFQNTLQNVLAAATKRNCNV---TQMRELPTLDSAVLN------ 224 + ++P+ ++ S + T L A KRN NV Q+ ++ ++ ++V+N Sbjct 340 SSENCYEPRFKTGALSTRKGTQTEALLAIKKRNMNVPNLGQIYDVNSVANSVVNKLLTTV 399 Query 225 -----VECFKKFACNGE--YWQEFKDNPIRITTENITTYVTRLKGPKAAALFAKTHNLVP 277 + F F GE Y+Q++ I +N + P +++ Sbjct 400 IDPDKLCMFPDFISEGEVSYFQDY------IVGKNPDPEL--YSDPLGVRSIDSYKHMIK 451 Query 278 LQEVPMDRFVVDMKRDVKVTPGTKHTEERPKVQVIQAAEPL---ATAYLCGIHRELVRRL 334 P++ + ++R + T T H ++ ++ ++ P+ A A L I R+ + Sbjct 452 SVLKPVEDNSLHLERPMPAT-ITYHDKD-----IVMSSSPIFLAAAARLMLILRDKI--- 502 Query 335 KAVLAPNIHTLFDMSAEDFDAIIAAHFQPGDAVLETDIASFDKSQddslaltalmlledl 394 + + H LF + AE FDA + HF+ E D + FDKSQ++ L L+ L Sbjct 503 -TIPSGKFHQLFSIDAEAFDA--SFHFK------EIDFSKFDKSQNELHHLIQERFLKYL 553 Query 395 GVDQELLDLIEAAFGEITSVHLPTGTRFKFGAMMKSGMFLTLFVNTLLNIVIACRVLREK 454 G+ E L L A + G F ++G LT NT++ + C V Sbjct 554 GIPNEFLTLWFNAHRKSRISDSKNGVFFNVDFQRRTGDALTYLGNTIVTLACLCHVYDLM 613 Query 455 LTNSVCAAFIGDDNIVHGVRSDPLMAERCASWVNMEVKIIDATMCEKPPYFCGGFILYDK 514 N GDD+++ V P R ++ + ++A P+ C F++ Sbjct 614 DPNVKFVVASGDDSLIGTVEELP----RDQEFLFTTLFNLEAKFPHNQPFICSKFLITMP 669 Query 515 VTGSA---CRVADPLKRLFKLGKPLPAGDTQDE 544 T + +PLK L +LG D DE Sbjct 670 TTSGGKVVLPIPNPLKLLIRLGSKKVNADIFDE 702 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Tomato mosaic virus (strain Kazakh K1)] Sequence ID: Q9Q1T8.2 Length: 1616 Range 1: 1198 to 1592 Score:60.1 bits(144), Expect:5e-08, Method:Compositional matrix adjust., Identities:95/418(23%), Positives:165/418(39%), Gaps:38/418(9%) Query 181 PQVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVLNVECFKKFACN---GEY 237 P VR+A P Q L L A KRN N ++ S V+++E + Y Sbjct 1198 PMVRTAAEMPRQTGLLENLVAMIKRNFNSPEL-------SGVVDIENTASLVVDKFFDSY 1250 Query 238 WQEFKDNPIR----ITTENITTYVTRLKGPKAAALFAKTHNLVPLQEVPMDRFVVDMKRD 293 + K P + + E++ ++ + + L + V L V R ++ + Sbjct 1251 LLKEKRKPNKNFSLFSRESLNRWIAKQEQVTIGQL--ADFDFVDLPAVDQYRHMIKAQPK 1308 Query 294 VKVTPGTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLKAVLAPNIHTLFDMSA--- 350 K+ + E P +Q I A + EL R+L + + F Sbjct 1309 QKLDLSIQ--TEYPALQTIVYHSKKINAIFGPLFSELTRQLLDSIDSSRFLFFTRKTPAQ 1366 Query 351 -EDFDAIIAAHFQPGDAVLETDIASFDKSQddslaltalmlledlGVDQELLDLIEAAFG 409 EDF + +H P D VLE D++ +DKSQ++ + LG++ L ++ + Sbjct 1367 IEDFFGDLDSHV-PMD-VLELDVSKYDKSQNEFHCAVEYEIWRRLGLEDFLAEVWKQGHR 1424 Query 410 EITSVHLPTGTRFKFGAMMKSGMFLTLFVNTLLNIVIACRVLREKLTNSVCAAFIGDDNI 469 + T G + KSG T NT+ I+ +C + + AF GDD++ Sbjct 1425 KTTLKDYTAGIKTCLWYQRKSGDVTTFIGNTV--IIASCLASMLPMEKLIKGAFCGDDSL 1482 Query 470 VH---GVRSDPLMAERCASWVNMEVKIIDATMCEKPPYFCGGFILYDKVTGSACRV-ADP 525 ++ G + W N E K+ ++ YFCG ++++ C V DP Sbjct 1483 LYFPKGCEYPDIQQAANLMW-NFEAKLFK----KQYGYFCGRYVIHH---DRGCIVYYDP 1534 Query 526 LKRLFKLGKPLPAGDTQDEDRRRALKDETDRWARVGLKSELEIALSSRYEVNGTGNIV 583 LK + KLG E+ RR+L D + ++L+ A+ ++ G+ V Sbjct 1535 LKLISKLGAKHIKDWDHLEEFRRSLCDVAESLNNCAYYTQLDDAVGEVHKTAPPGSFV 1592 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Tomato mosaic virus (strain Kazakh K2)] Sequence ID: P89676.1 Length: 1616 Range 1: 1198 to 1592 Score:60.1 bits(144), Expect:5e-08, Method:Compositional matrix adjust., Identities:95/418(23%), Positives:165/418(39%), Gaps:38/418(9%) Query 181 PQVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVLNVECFKKFACN---GEY 237 P VR+A P Q L L A KRN N ++ S V+++E + Y Sbjct 1198 PMVRTAAEMPRQTGLLENLVAMIKRNFNSPEL-------SGVVDIENTASLVVDKFFDSY 1250 Query 238 WQEFKDNPIR----ITTENITTYVTRLKGPKAAALFAKTHNLVPLQEVPMDRFVVDMKRD 293 + K P + + E++ ++ + + L + V L V R ++ + Sbjct 1251 LLKEKRKPNKNFSLFSRESLNRWIAKQEQVTIGQL--ADFDFVDLPAVDQYRHMIKAQPK 1308 Query 294 VKVTPGTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLKAVLAPNIHTLFDMSA--- 350 K+ + E P +Q I A + EL R+L + + F Sbjct 1309 QKLDLSIQ--TEYPALQTIVYHSKKINAIFGPLFSELTRQLLDSIDSSRFLFFTRKTPAQ 1366 Query 351 -EDFDAIIAAHFQPGDAVLETDIASFDKSQddslaltalmlledlGVDQELLDLIEAAFG 409 EDF + +H P D VLE D++ +DKSQ++ + LG++ L ++ + Sbjct 1367 IEDFFGDLDSHV-PMD-VLELDVSKYDKSQNEFHCAVEYEIWRRLGLEDFLAEVWKQGHR 1424 Query 410 EITSVHLPTGTRFKFGAMMKSGMFLTLFVNTLLNIVIACRVLREKLTNSVCAAFIGDDNI 469 + T G + KSG T NT+ I+ +C + + AF GDD++ Sbjct 1425 KTTLKDYTAGIKTCLWYQRKSGDVTTFIGNTV--IIASCLASMLPMEKLIKGAFCGDDSL 1482 Query 470 VH---GVRSDPLMAERCASWVNMEVKIIDATMCEKPPYFCGGFILYDKVTGSACRV-ADP 525 ++ G + W N E K+ ++ YFCG ++++ C V DP Sbjct 1483 LYFPKGCEYPDIQQAANLMW-NFEAKLFK----KQYGYFCGRYVIHH---DRGCIVYYDP 1534 Query 526 LKRLFKLGKPLPAGDTQDEDRRRALKDETDRWARVGLKSELEIALSSRYEVNGTGNIV 583 LK + KLG E+ RR+L D + ++L+ A+ ++ G+ V Sbjct 1535 LKLISKLGAKHIKDWDHLEEFRRSLCDVAESLNNCAYYTQLDDAVGEVHKTAPPGSFV 1592 >RecName: Full=Replicase polyprotein 1ab; Contains: RecName: Full=Leader protease; Short=L-Pro; AltName: Full=Papain-like cysteine proteinase; Short=PCP; Contains: RecName: Full=Methyltransferase/helicase/RNA-directed RNA polymerase [Beet yellows virus isolate Ukraine] Sequence ID: Q08534.2 Length: 3094 Range 1: 2507 to 3061 Score:60.1 bits(144), Expect:5e-08, Method:Compositional matrix adjust., Identities:137/581(24%), Positives:221/581(38%), Gaps:61/581(10%) Query 66 SRKVENMKAVIIDRLKDGARTYLTEQSEKIPTYVSKYPRPVYSPSVEDSLQNPEVA---- 121 SR VE++ ++ +D A +++++ YP + S D NP + Sbjct 2507 SRHVESLTYSVLSSKRDDAIAQAIVKAKQLVDAYRVYPTS-FGGSTLDVSVNPSTSDRSK 2565 Query 122 -------VAACNAFLEANYPTVASYQITDEYDAYLDMV--DGSESCLDRATFCPAKLRCY 172 N+FLE+ P S D + V G+++ + R + A + Sbjct 2566 CKASSAPYEVINSFLESVVPGTTSVDFGDVSEEMGTQVFESGADNVVIRDS---APVNKS 2622 Query 173 PKHHAYHQPQVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELP---TLDSAVLNVECFK 229 H +RS + +LQ L + RN N T A+ V + Sbjct 2623 TDHDPQRVSSIRSQAIPKRKPSLQENLYSYESRNYNFTVCERFSGPQEFGQAMAMVMLER 2682 Query 230 KFACNGEYWQEFKDNPIRITTENITTYVTRLKGPKAAALFAKTHNLVPLQEVPMDRFVVD 289 F + E + + + I IT + + T++++ + + AL + + L+E + F + Sbjct 2683 SF--DLEKVAKVRSDVIAITEKGVRTWMSKREPSQLRALSSDLQKPLNLEE-EITTFKLM 2739 Query 290 MKRDVKVTPGTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLKAVLAPNIHTLFDMS 349 +KRD KV + + P Q I A E R+ NI +M+ Sbjct 2740 VKRDAKVKLDSSCLVKHPPAQNIMFHRKAVNAIFSPCFDEFKNRVITCTNSNIVFFTEMT 2799 Query 350 AEDFDAIIAAHFQPGDAVL---ETDIASFDKSQddslaltalmlledlGVDQELLDLIEA 406 A IA + V E D + FDKSQD + L G D++LLD+ Sbjct 2800 NSTL-ASIAKEMLGSEHVYNVGEIDFSKFDKSQDAFIKSFERTLYSAFGFDEDLLDVWMQ 2858 Query 407 AFGEITS--VHLPTGTRFKFGAMMKSGMFLTLFVNTLLNIVIACRVLREKLTNSVCAAFI 464 GE TS L F KSG T N++ + I TN A F+ Sbjct 2859 --GEYTSNATTLDGQLSFSVDNQRKSGASNTWIGNSIETLGILSMFY---YTNRFKALFV 2913 Query 465 -GDDNIVHGVRSDPLMAERCASWVNMEVKIIDATMCEKPPYFCGGFILYDKVTG-SACRV 522 GDD+++ A+ + + E K + ++ PYFC F + +TG V Sbjct 2914 SGDDSLIFSESPIRNSADAMCTELGFETKFLTPSV----PYFCSKFFV---MTGHDVFFV 2966 Query 523 ADPLKRLFKLGKPLPAGDTQDED--------RRRALKDETDRWARVGLKSELEIALSSRY 574 DP K L KLG + D D++ R KD D + L + L + Y Sbjct 2967 PDPYKLLVKLG---ASKDEVDDEFLFEVFTSFRDLTKDLVDERV-IELLTHL-VHSKYGY 3021 Query 575 EVNGTGNIVRAMATLAKSLKNFKKL----RGPIVHLYGGPK 611 E T + A+ + + +FKKL +G +VH YG K Sbjct 3022 ESGDTYAALCAIHCIRSNFSSFKKLYPKVKGWVVH-YGKLK 3061 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Tobacco mosaic virus strain tomato/L] Sequence ID: P03587.2 Length: 1616 Range 1: 1198 to 1592 Score:59.7 bits(143), Expect:6e-08, Method:Compositional matrix adjust., Identities:95/418(23%), Positives:165/418(39%), Gaps:38/418(9%) Query 181 PQVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVLNVECFKKFACN---GEY 237 P VR+A P Q L L A KRN N ++ S V+++E + Y Sbjct 1198 PMVRTAAEMPRQTGLLENLVAMIKRNFNSPEL-------SGVVDIENTASLVVDKFFDSY 1250 Query 238 WQEFKDNPIR----ITTENITTYVTRLKGPKAAALFAKTHNLVPLQEVPMDRFVVDMKRD 293 + K P + + E++ ++ + + L + V L V R ++ + Sbjct 1251 LLKEKRKPNKNFSLFSRESLNRWIAKQEQVTIGQL--ADFDFVDLPAVDQYRHMIKAQPK 1308 Query 294 VKVTPGTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLKAVLAPNIHTLFDMSA--- 350 K+ + E P +Q I A + EL R+L + + F Sbjct 1309 QKLDLSIQ--TEYPALQTIVYHSKKINAIFGPLFSELTRQLLDSIDSSRFLFFTRKTPAQ 1366 Query 351 -EDFDAIIAAHFQPGDAVLETDIASFDKSQddslaltalmlledlGVDQELLDLIEAAFG 409 EDF + +H P D VLE D++ +DKSQ++ + LG++ L ++ + Sbjct 1367 IEDFFGDLDSHV-PMD-VLELDVSKYDKSQNEFHCAVEYEIWRRLGLEDFLAEVWKQGHR 1424 Query 410 EITSVHLPTGTRFKFGAMMKSGMFLTLFVNTLLNIVIACRVLREKLTNSVCAAFIGDDNI 469 + T G + KSG T NT+ I+ +C + + AF GDD++ Sbjct 1425 KTTLKDYTAGIKTCLWYQRKSGDVTTFIGNTV--IIASCLASMLPMEKLIKGAFCGDDSL 1482 Query 470 VH---GVRSDPLMAERCASWVNMEVKIIDATMCEKPPYFCGGFILYDKVTGSACRV-ADP 525 ++ G + W N E K+ ++ YFCG ++++ C V DP Sbjct 1483 LYFPKGCEYPDIQQAANLMW-NFEAKLFK----KQYGYFCGRYVIHH---DRGCIVYYDP 1534 Query 526 LKRLFKLGKPLPAGDTQDEDRRRALKDETDRWARVGLKSELEIALSSRYEVNGTGNIV 583 LK + KLG E+ RR+L D + ++L+ A+ ++ G+ V Sbjct 1535 LKLISKLGAKHIKDWDHLEEFRRSLCDVAESLNNCAYYTQLDDAVGEVHKTAPPGSFV 1592 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Tobacco mosaic virus strain B395A] Sequence ID: Q9YQ08.1 Length: 1616 Range 1: 1198 to 1561 Score:59.3 bits(142), Expect:8e-08, Method:Compositional matrix adjust., Identities:89/384(23%), Positives:152/384(39%), Gaps:32/384(8%) Query 181 PQVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVLNVECFKKFACNGEYWQE 240 P VR+A P Q L L A KRN N ++ S ++++E + +++ Sbjct 1198 PMVRTAAEMPRQTGLLENLVAMIKRNFNAPEL-------SGIIDIENTASLVVD-KFFDS 1249 Query 241 FKDNPIRITTENITTY----VTRLKGPKAAALFAKTHNLVPLQEVPMDRFVVDMKRDVKV 296 + R +N++ + + R + + + + +D++ +K K Sbjct 1250 YLLKEKRKPNKNVSLFSRESLNRWLEKQEQVTIGQLADFDFVDLPAVDQYRHMIKAQPKQ 1309 Query 297 TPGTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLKAVLAPNIHTLFDMSA----ED 352 T E P +Q I +A + EL R+L + + F ED Sbjct 1310 KLDTSIQTEYPALQTIVYHSKKISAIFGPLFSELTRQLLDSVDSSRFLFFTRKTPAQIED 1369 Query 353 FDAIIAAHFQPGDAVLETDIASFDKSQddslaltalmlledlGVDQELLDLIEAAFGEIT 412 F + +H P D VLE DI+ +DKSQ++ + LG + L ++ + + T Sbjct 1370 FFGDLDSHV-PMD-VLELDISKYDKSQNEFHCAVEYEIWRRLGFEDFLGEVWKQGHRKTT 1427 Query 413 SVHLPTGTRFKFGAMMKSGMFLTLFVNTLLNIVIACRVLREKLTNSVCAAFIGDDNIVH- 471 G + KSG T NT+ I+ AC + + AF GDD++++ Sbjct 1428 LKDYTAGIKTCIWYQRKSGDVTTFIGNTV--IIAACLASMLPMEKIIKGAFCGDDSLLYF 1485 Query 472 --GVRSDPLMAERCASWVNMEVKIIDATMCEKPPYFCGGFILYDKVTGSACRV-ADPLKR 528 G + W N E K+ ++ YFCG ++++ C V DPLK Sbjct 1486 PKGCEFPDVQHSANLMW-NFEAKLFK----KQYGYFCGRYVIHHD---RGCIVYYDPLKL 1537 Query 529 LFKLGKPLPAGDTQDEDRRRALKD 552 + KLG E+ RR+L D Sbjct 1538 ISKLGAKHIKDWEHLEEFRRSLCD 1561 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Tobacco mosaic virus strain Korean] Sequence ID: P30738.2 Length: 1616 Range 1: 1198 to 1561 Score:58.9 bits(141), Expect:1e-07, Method:Compositional matrix adjust., Identities:89/384(23%), Positives:151/384(39%), Gaps:32/384(8%) Query 181 PQVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVLNVECFKKFACNGEYWQE 240 P VR+A P Q L L A KRN N ++ S ++++E + +++ Sbjct 1198 PMVRTAAEMPRQTGLLENLVAMIKRNFNAPEL-------SGIIDIENTASLVVD-KFFDS 1249 Query 241 FKDNPIRITTENITTY----VTRLKGPKAAALFAKTHNLVPLQEVPMDRFVVDMKRDVKV 296 + R +N++ + + R + + + + +D++ +K K Sbjct 1250 YLLKEKRKPNKNVSLFSRESLNRWLEKQEQVTIGQLADFDFVDLPAVDQYRHMIKAQPKQ 1309 Query 297 TPGTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLKAVLAPNIHTLFDMSA----ED 352 T E P +Q I A + EL R+L + + F ED Sbjct 1310 KLDTSIQTEYPALQTIVYHSKKINAIFGPLFSELTRQLLDSVDSSRFLFFTRKTPAQIED 1369 Query 353 FDAIIAAHFQPGDAVLETDIASFDKSQddslaltalmlledlGVDQELLDLIEAAFGEIT 412 F + +H P D VLE DI+ +DKSQ++ + LG + L ++ + + T Sbjct 1370 FFGDLDSHV-PMD-VLELDISKYDKSQNEFHCAVEYEIWRRLGFEDFLGEVWKQGHRKTT 1427 Query 413 SVHLPTGTRFKFGAMMKSGMFLTLFVNTLLNIVIACRVLREKLTNSVCAAFIGDDNIVH- 471 G + KSG T NT+ I+ AC + + AF GDD++++ Sbjct 1428 LKDYTAGIKTCIWYQRKSGDVTTFIGNTV--IIAACLASMLPMEKIIKGAFCGDDSLLYF 1485 Query 472 --GVRSDPLMAERCASWVNMEVKIIDATMCEKPPYFCGGFILYDKVTGSACRV-ADPLKR 528 G + W N E K+ ++ YFCG ++++ C V DPLK Sbjct 1486 PKGCEFPDVQHSANLMW-NFEAKLFK----KQYGYFCGRYVIHHD---RGCIVYYDPLKL 1537 Query 529 LFKLGKPLPAGDTQDEDRRRALKD 552 + KLG E+ RR+L D Sbjct 1538 ISKLGAKHIKDWEHLEEFRRSLCD 1561 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Tobacco mosaic virus strain OM] Sequence ID: O93058.1 Length: 1616 Range 1: 1198 to 1561 Score:58.5 bits(140), Expect:1e-07, Method:Compositional matrix adjust., Identities:89/384(23%), Positives:151/384(39%), Gaps:32/384(8%) Query 181 PQVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVLNVECFKKFACNGEYWQE 240 P VR+A P Q L L A KRN N ++ S ++++E + +++ Sbjct 1198 PMVRTAAEMPRQTGLLENLVAMIKRNFNAPEL-------SGIIDIENTASLVVD-KFFDS 1249 Query 241 FKDNPIRITTENITTY----VTRLKGPKAAALFAKTHNLVPLQEVPMDRFVVDMKRDVKV 296 + R +N++ + + R + + + + +D++ +K K Sbjct 1250 YLLKEKRKPNKNVSLFSRESLNRWLEKQEQVTIGQLADFDFVDLPAVDQYRHMIKAQPKQ 1309 Query 297 TPGTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLKAVLAPNIHTLFDMSA----ED 352 T E P +Q I A + EL R+L + + F ED Sbjct 1310 KLDTSIQTEYPALQTIVYHSKKINAIFGPLFSELTRQLLDSVDSSRFLFFTRKTPAQIED 1369 Query 353 FDAIIAAHFQPGDAVLETDIASFDKSQddslaltalmlledlGVDQELLDLIEAAFGEIT 412 F + +H P D VLE DI+ +DKSQ++ + LG + L ++ + + T Sbjct 1370 FFGDLDSHV-PMD-VLELDISKYDKSQNEFHCAVEYEIWRRLGFEDFLGEVWKQGHRKTT 1427 Query 413 SVHLPTGTRFKFGAMMKSGMFLTLFVNTLLNIVIACRVLREKLTNSVCAAFIGDDNIVH- 471 G + KSG T NT+ I+ AC + + AF GDD++++ Sbjct 1428 LKDYTAGIKTCIWYQRKSGDVTTFIGNTV--IIAACLASMLPMEKIIKGAFCGDDSLLYF 1485 Query 472 --GVRSDPLMAERCASWVNMEVKIIDATMCEKPPYFCGGFILYDKVTGSACRV-ADPLKR 528 G + W N E K+ ++ YFCG ++++ C V DPLK Sbjct 1486 PKGCEFPDVQHSANLMW-NFEAKLFK----KQYGYFCGRYVIHHD---RGCIVYYDPLKL 1537 Query 529 LFKLGKPLPAGDTQDEDRRRALKD 552 + KLG E+ RR+L D Sbjct 1538 ISKLGAKHIKDWEHLEEFRRSLCD 1561 >RecName: Full=Replicase large subunit; AltName: Full=186 kDa protein; Contains: RecName: Full=Replicase small subunit; AltName: Full=129 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Cucumber green mottle mosaic virus (watermelon strain SH)] Sequence ID: P69514.1 Length: 1648 Range 1: 1230 to 1594 Score:58.5 bits(140), Expect:2e-07, Method:Compositional matrix adjust., Identities:89/379(23%), Positives:145/379(38%), Gaps:21/379(5%) Query 181 PQVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVLNVECFKKFACNGEYWQE 240 P +R+A P L L A KRN N + T+D +++ F + + Sbjct 1230 PVLRTACERPRIPGLLENLVAMIKRNMNTPDLA--GTVDITNMSISIVDNFFSSFVRDEV 1287 Query 241 FKDNPIRITTENITTYVTRLK-GPKAAALFAKTHNLVPLQEVPMDRFVVDMKRDVKVTPG 299 D+ + +I ++ P +A N + L D ++ +KR K Sbjct 1288 LLDHLDCVRASSIQSFSDWFSCQPTSAVGQLANFNFIDLP--AFDTYMHMIKRQPKSRLD 1345 Query 300 TKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLKAVLAPNIHTLFDMSA-EDFDAIIA 358 T E P +Q I + A + + L + +++ + + ED + Sbjct 1346 TSIQSEYPALQTIVYHPKVVNAVFGPVFKYLTTKFLSMVDSSKFFFYTRKKPEDLQEFFS 1405 Query 359 AHFQPGD-AVLETDIASFDKSQddslaltalmlledlGVDQELLDLIEAAFGEITSVHLP 417 D +LE D++ +DKSQ D + + E LG+D L + Sbjct 1406 DLSSHSDYEILELDVSKYDKSQSDFHFSIEMAIWEKLGLDDILAWMWSMGHKRTILQDFQ 1465 Query 418 TGTRFKFGAMMKSGMFLTLFVNTLLNIVIACRVLREKLTNSVCAAFIGDDNIVH---GVR 474 G + KSG T NT I+ AC L A+F GDD++++ G+ Sbjct 1466 AGIKTLIYYQRKSGDVTTFIGNTF--IIAACVASMLPLDKCFKASFCGDDSLIYLPKGLE 1523 Query 475 SDPLMAERCASWVNMEVKIIDATMCEKPPYFCGGFILYDKVTGSACRVA-DPLKRLFKLG 533 + A W N E K+ +K YFCG +I++ + C V DPLK + KLG Sbjct 1524 YPDIQATANLVW-NFEAKLFR----KKYGYFCGKYIIHH---ANGCIVYPDPLKLISKLG 1575 Query 534 KPLPAGDTQDEDRRRALKD 552 G E+ R +L D Sbjct 1576 NKSLVGYEHVEEFRISLLD 1594 >RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a [Olive latent virus 2 isolate Italy] Sequence ID: Q83944.1 Length: 787 Range 1: 342 to 739 Score:58.2 bits(139), Expect:2e-07, Method:Compositional matrix adjust., Identities:104/445(23%), Positives:163/445(36%), Gaps:71/445(15%) Query 183 VRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPT-LDSAVLNVECFKKF-------ACN 234 +R+ + P T + +L A +KRN QM E+P + L F+ F + Sbjct 342 IRTGLEMPRIATKKEMLMAFSKRNVGAPQMVEVPQEIHVKRLADRFFRTFLKEGGWDKGD 401 Query 235 GEYWQEFKDNPIR--ITTEN-----ITTYVTRLKGPKAAALFAKTHNLVPLQEVPMDRFV 287 G YW +F R + EN +++Y+ LK +F Sbjct 402 GHYWDDFFHRKGRKVFSLENCYDDPLSSYLVMLKS--------------------AGKFS 441 Query 288 VDMKRDVKVTPGTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLKAVLAPNIHTLFD 347 +D+ V+ P T E+ E + +L + R R V+ P Sbjct 442 LDLNFPVRSVPQTITYHEK------WVTEVFSPMFLQVMARFFSRLQDWVVVPA------ 489 Query 348 MSAEDFDAIIAAHFQPGDAVLETDIASFDKSQddslaltalmlledlGVDQELLDLIEAA 407 DF + + G + E D++ FDKSQ L + LG D Sbjct 490 GPMADFSRVWPSF--EGKCLTEIDLSKFDKSQGKLLHDVQREIFLRLGFPPIWCDWW-FK 546 Query 408 FGEITSVHLPT-GTRFKFGAMMKSGMFLTLFVNTLLNIVIACRVLREKLTNSVCAAFIGD 466 F E + ++ G F ++G T F NTL+ +++ V E + C F GD Sbjct 547 FHESSYLNDKNLGIAFSVDYQRRTGNTATYFGNTLVTMIMMAEVY-ELDSLPFCGLFSGD 605 Query 467 DNIVHGVRSDPLMAERCASWVNMEVKII---DATMCEKPPYFCGGFILYDKVTGSACRVA 523 DN++ R + NME K++ MC K Y C V G V Sbjct 606 DNLIVTDRPLEGRVSLFPNMFNMEAKVMRPGQNYMCSK--YLC-------TVDGRVTPVP 656 Query 524 DPLKRLFKLGKPLPAGDTQDEDRRRALKDETDRWARVGLKSELEIALSSRYEV--NGTGN 581 DP K L K G P +D + D T R +++ + ++ RY+V + G Sbjct 657 DPFKLLKKAGASCPL--EHLDDFYESFLDYTKYLVRDEVRTLIPRLMAHRYQVSMDEAGV 714 Query 582 IVRAMATLAKSLKNFKK---LRGPI 603 + + + KS F K R PI Sbjct 715 ALDQIMSWRKSKTQFFKHFQYRKPI 739 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Tomato mosaic virus (strain S-1)] Sequence ID: Q9YKD6.1 Length: 1616 Range 1: 1198 to 1592 Score:58.2 bits(139), Expect:2e-07, Method:Compositional matrix adjust., Identities:94/418(22%), Positives:165/418(39%), Gaps:38/418(9%) Query 181 PQVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVLNVECFKKFACN---GEY 237 P VR+A P Q L L A KRN N ++ S V+++E + Y Sbjct 1198 PMVRTAAEMPRQTGLLENLVAMIKRNFNSPEL-------SGVVDIENTASLVVDKFFDSY 1250 Query 238 WQEFKDNPIR----ITTENITTYVTRLKGPKAAALFAKTHNLVPLQEVPMDRFVVDMKRD 293 + K P + + E++ ++ + + L + V L V R ++ + Sbjct 1251 LLKEKRKPNKNFSLFSRESLNRWIAKQEQVTIGQL--ADFDFVDLPAVDQYRHMIKAQPK 1308 Query 294 VKVTPGTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLKAVLAPNIHTLFDMSA--- 350 K+ + E P +Q I A + EL R+L + + F Sbjct 1309 QKLDLSIQ--TEYPALQTIVYHSKKINAIFGPLFSELTRQLLDSIDSSRFLFFTRKTPAQ 1366 Query 351 -EDFDAIIAAHFQPGDAVLETDIASFDKSQddslaltalmlledlGVDQELLDLIEAAFG 409 EDF + +H P D VLE D++ +DKSQ++ + LG++ L ++ + Sbjct 1367 IEDFFGDLDSHV-PMD-VLELDVSKYDKSQNEFHCAVEYEIWRRLGLEDFLAEVWKQGHR 1424 Query 410 EITSVHLPTGTRFKFGAMMKSGMFLTLFVNTLLNIVIACRVLREKLTNSVCAAFIGDDNI 469 + T G + KSG T NT+ I+ +C + + AF GDD++ Sbjct 1425 KTTLKDYTAGIKTCLWYQRKSGDVTTFIGNTV--IIASCLASMLPMEKLIKGAFCGDDSL 1482 Query 470 VH---GVRSDPLMAERCASWVNMEVKIIDATMCEKPPYFCGGFILYDKVTGSACRV-ADP 525 ++ G + W N E K+ ++ YFCG ++++ C V DP Sbjct 1483 LYFPKGCEYPDIQQAANLMW-NFEAKLFK----KQYGYFCGRYVIHH---DRGCIVYYDP 1534 Query 526 LKRLFKLGKPLPAGDTQDEDRRRALKDETDRWARVGLKSELEIALSSRYEVNGTGNIV 583 LK + KLG E+ RR+L + + ++L+ A+ ++ G+ V Sbjct 1535 LKLISKLGAKHIKDWDHLEEFRRSLCNVAESLNNCAYYTQLDDAVGEVHKTAPPGSFV 1592 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Tobacco mosaic virus (vulgare)] Sequence ID: P03586.2 Length: 1616 Range 1: 1198 to 1561 Score:58.2 bits(139), Expect:2e-07, Method:Compositional matrix adjust., Identities:89/384(23%), Positives:150/384(39%), Gaps:32/384(8%) Query 181 PQVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVLNVECFKKFACNGEYWQE 240 P VR+A P Q L L A KRN N ++ S ++++E + +++ Sbjct 1198 PMVRTAAEMPRQTGLLENLVAMIKRNFNAPEL-------SGIIDIENTASLVVD-KFFDS 1249 Query 241 FKDNPIRITTENITTY----VTRLKGPKAAALFAKTHNLVPLQEVPMDRFVVDMKRDVKV 296 + R +N++ + + R + + + + +D++ K K Sbjct 1250 YLLKEKRKPNKNVSLFSRESLNRWLEKQEQVTIGQLADFDFVDLPAVDQYRHMYKAQPKQ 1309 Query 297 TPGTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLKAVLAPNIHTLFDMSA----ED 352 T E P +Q I A + EL R+L + + F ED Sbjct 1310 KLDTSIQTEYPALQTIVYHSKKINAIFGPLFSELTRQLLDSVDSSRFLFFTRKTPAQIED 1369 Query 353 FDAIIAAHFQPGDAVLETDIASFDKSQddslaltalmlledlGVDQELLDLIEAAFGEIT 412 F + +H P D VLE DI+ +DKSQ++ + LG + L ++ + + T Sbjct 1370 FFGDLDSHV-PMD-VLELDISKYDKSQNEFHCAVEYEIWRRLGFEDFLGEVWKQGHRKTT 1427 Query 413 SVHLPTGTRFKFGAMMKSGMFLTLFVNTLLNIVIACRVLREKLTNSVCAAFIGDDNIVH- 471 G + KSG T NT+ I+ AC + + AF GDD++++ Sbjct 1428 LKDYTAGIKTCIWYQRKSGDVTTFIGNTV--IIAACLASMLPMEKIIKGAFCGDDSLLYF 1485 Query 472 --GVRSDPLMAERCASWVNMEVKIIDATMCEKPPYFCGGFILYDKVTGSACRV-ADPLKR 528 G + W N E K+ ++ YFCG ++++ C V DPLK Sbjct 1486 PKGCEFPDVQHSANLMW-NFEAKLFK----KQYGYFCGRYVIHHD---RGCIVYYDPLKL 1537 Query 529 LFKLGKPLPAGDTQDEDRRRALKD 552 + KLG E+ RR+L D Sbjct 1538 ISKLGAKHIKDWEHLEEFRRSLCD 1561 >RecName: Full=Replicase polyprotein 1ab; Contains: RecName: Full=Leader protease; Short=L-Pro; AltName: Full=Papain-like cysteine proteinase; Short=PCP; Contains: RecName: Full=Methyltransferase/helicase/RNA-directed RNA polymerase [Grapevine leafroll-associated virus 3 isolate NY1] Sequence ID: O71189.3 Length: 2772 Range 1: 2318 to 2729 Score:56.2 bits(134), Expect:7e-07, Method:Compositional matrix adjust., Identities:104/434(24%), Positives:178/434(41%), Gaps:39/434(8%) Query 183 VRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVLNV-ECFKKFACNGEYWQEF 241 +RS+V P +NTL+ L RN N + + DS + E F + N E Sbjct 2318 IRSSVGLPKRNTLKCNLVTFENRNFNADRGCNVGCDDSVAHELKEIFFEEVVNKARLAEV 2377 Query 242 KDNPIRITTENITTYVTRLKGPKAAALFAKTHNLVPLQEVPMDRFVVDMKRDVK----VT 297 ++ + T ++ ++ + + P A + + + + +K DVK T Sbjct 2378 TESHLSSNTMLLSDWLDK-RAPNAYKSLKRALGSFVFHPSMLTSYTLMVKADVKPKLDNT 2436 Query 298 PGTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLKAVLAPNIHTLFDMSAEDFDAII 357 P +K+ Q I + TA I V RLK V+ M + A + Sbjct 2437 PLSKYVTG----QNIVYHDRCVTALFSCIFTACVERLKYVVDERWLFYHGMDTAELAAAL 2492 Query 358 AAHFQPGDA----VLETDIASFDKSQddslaltalmlledlGVDQELLDLIEAAFGEITS 413 + GD E DI+ +DKSQ + ++L LGVD+E+L GE S Sbjct 2493 RNNL--GDIRQYYTYELDISKYDKSQSALMKQVEELILLTLGVDREVLSTFFC--GEYDS 2548 Query 414 VHLPTGTR---FKFGAMMKSGMFLTLFVNTLLNIVIACRVLREKLTNSVCAAFIGDDNIV 470 V + T T+ G+ +SG T N+L+ + VLR + + + GDD+++ Sbjct 2549 V-VRTMTKELVLSVGSQRRSGGANTWLGNSLVLCTLLSVVLRGLDYSYIVVS--GDDSLI 2605 Query 471 HGVRSDPLMAERCASWVNMEVKIIDATMCEKPPYFCGGFILYDKVTGSACRVADPLKRLF 530 + + + +VKI + + PYFC F++ +V S V DPLK Sbjct 2606 FSRQPLDIDTSVLSDNFGFDVKIFN----QAAPYFCSKFLV--QVEDSLFFVPDPLKLFV 2659 Query 531 KLGKPLPAGDTQDEDRR----RALKDETDRWARVGLKSELEIALSSRYEVNG-TGNIVRA 585 K G A T D D ++ D + + R + EL ++ +Y+ +G T + + Sbjct 2660 KFG----ASKTSDIDLLHEIFQSFVDLSKGFNREDVIQELAKLVTRKYKHSGWTYSALCV 2715 Query 586 MATLAKSLKNFKKL 599 + L+ + F +L Sbjct 2716 LHVLSANFSQFCRL 2729 >RecName: Full=RNA-directed RNA polymerase; AltName: Full=Gamma-A protein [Barley stripe mosaic virus] Sequence ID: Q80873.1 Length: 771 Range 1: 345 to 751 Score:55.1 bits(131), Expect:1e-06, Method:Compositional matrix adjust., Identities:102/434(24%), Positives:171/434(39%), Gaps:40/434(9%) Query 180 QPQVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAV---LNVECFKKFACNGE 236 +P +R+A+P Q +L + A KRN P L A+ +E K A Sbjct 345 KPVLRTAMPEKRQGSLIESVLAFRKRNLAA------PRLQGALNEWHTIENVLKKALKVF 398 Query 237 YWQEFKDNPIRITTENITTYVTRLKGPKAAALFAKTHNLVPLQEVPMDRFVVDMKRDVKV 296 ++++ D T E+ + + A L A L +V + +K DVK Sbjct 399 FFEDLIDRTDHCTYESALRWWDKQSVTARAQLVADQRRLC---DVDFTTYNFMIKNDVKP 455 Query 297 TPGTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLKAVLAPNIHTLFD--MSAEDFD 354 E +Q + + + A+ I +E+ R+ L P H +F+ M+A++ + Sbjct 456 KLDLTPQVEYAALQTVVYPDKIVNAFFGPIIKEINERIIRALRP--HVVFNSRMTADELN 513 Query 355 AIIAAHFQPGDAVLETDIASFDKSQddslaltalmlledlGVDQELLDLIEAAFGEITSV 414 +A LE D + FDKS+ + L + G+D L L E + + Sbjct 514 ETVAFLTPHKYRALEIDFSKFDKSKTGLHIKAVIGLYKLFGLDGLLKVLWEKSQYQTYVK 573 Query 415 HLPTGTRFKFGAMMKSGMFLTLFVNTLLNIVIACRVLREKLTNSVCAAFIGDDNIV---H 471 G KSG T NT + L L ++ F GDD+++ Sbjct 574 DRNFGLEAYLLYQQKSGNCDTYGSNTWSAALALLDCL--PLEDAHFCVFGGDDSLILFDQ 631 Query 472 G-VRSDPLMAERCASWVNMEVKIIDATMCEKPPYFCGGFILYDKVTGSACRVADPLKRLF 530 G + SDP + +W N+E K+ D K P FCG F+L + G V D K + Sbjct 632 GYIISDP-CRQLAGTW-NLECKVFDF----KYPAFCGKFLLC--IDGKYQFVPDAAKFIT 683 Query 531 KLGKPLPAGDTQD----EDRRRALKDETDRWARVGLKSELEIALSSRYEVNGTGNIVRAM 586 KLG+ D +D + ++ D + + L+ AL RY + + A+ Sbjct 684 KLGRT----DVRDVEVLSEIYISINDNYKSYKDFKVLDALDKALVDRYR--SPYSAISAL 737 Query 587 ATLAKSLKNFKKLR 600 +L + +F K + Sbjct 738 VSLCYHIFDFNKFK 751 >RecName: Full=Methyltransferase/helicase/RNA-directed RNA polymerase [Raspberry bushy dwarf virus isolate R15] Sequence ID: Q05983.1 Length: 1694 Range 1: 1279 to 1674 Score:55.1 bits(131), Expect:1e-06, Method:Compositional matrix adjust., Identities:98/416(24%), Positives:157/416(37%), Gaps:32/416(7%) Query 196 QNVLAAATKRNCNVTQMRELPTLDS-AVLNVECFKKFACNGEYWQEFKDNPIRITTENIT 254 + V A KRN NV ++ L++ A VE F F + E + + + + E I Sbjct 1279 RQVGLAIEKRNANVMNSQKYFDLENLANKAVERFFDFFIDMEKFSKLPTGVLGSSAEQIQ 1338 Query 255 TYVTRLKGPKAAALFAKTHNLVPLQEVPMDRFVVDMKRDVKVTPGTKHTEERPKVQVIQA 314 TY + K + V + P+ ++ +KRDVK E K I Sbjct 1339 TYQNKTGN--------KVTDPVCVALSPIQKYKHMIKRDVKFNLTDGAQSEYTKAATITY 1390 Query 315 AEPLATAYLCGIHRELVRRLKAVLAPNIHTLFDMSAEDFDAIIAAHF-QPGDAVLETDIA 373 +P T I + RL A ++ + + + H + E D + Sbjct 1391 HQPEITQVATAIFGQFKTRLLACRNKFLNIPLEHDNDLSGYLTKYHLGSENNTFTEIDFS 1450 Query 374 SFDKSQddslaltalmlledlGVDQELLDLIEAAFGEITSVHLPTGTRFKFGAMMKSGMF 433 FDKSQ + L ++L G D E + L A + G FK ++G Sbjct 1451 KFDKSQGEIHQLIQDLILIKFGCDPEFVALWSTAHRSSSIFDQNVGIGFKTDFQRRTGDA 1510 Query 434 LTLFVNTLLNIVIACRVL----REKLTNSVCAAFIGDDNIV--HGVRSDPLMAERCASWV 487 T N+L+ + V+ REK+ + GDD+++ +G PL E Sbjct 1511 FTFLGNSLVTAAMLAFVISDPDREKIRYMLVG---GDDSLICSYGPIQVPL--EPLGDIF 1565 Query 488 NMEVKIIDATMCEKPPYFCGGFILYDKVTGSACRVADPLKRLFKLG-KPLPAGDTQDEDR 546 NM K++ PYF +++ + V DP K L KLG K +P + Sbjct 1566 NMSCKLVQPAC----PYFASRYLI--RRGDEILCVPDPYKLLVKLGRKDVPDNQASLCEI 1619 Query 547 RRALKDETDRWARVGLKSELEIALSSRYEVNGTGNIVRAMATLAKSLK---NFKKL 599 R L D +K +L I + RY ++ A+ T+ +L NF K Sbjct 1620 RTGLADSAKYIFDDIVKQKLAILVQVRYN-KAAPSLYDALCTVHWALSSNTNFSKF 1674 >RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a [Brome mosaic virus] Sequence ID: P03594.1 Length: 822 Range 1: 462 to 628 Score:55.1 bits(131), Expect:2e-06, Method:Compositional matrix adjust., Identities:51/188(27%), Positives:84/188(44%), Gaps:23/188(12%) Query 368 LETDIASFDKSQddslaltalmlledlGVDQELLDLIEAAFGE--ITSVHLPTGTRFKFG 425 LE D++ FDKSQ + +L LG L + + ++ H G F Sbjct 462 LEADLSKFDKSQGELHLEFQREILLALGFPAPLTNWWSDFHRDSYLSDPHAKVGMSVSF- 520 Query 426 AMMKSGMFLTLFVNTLLNIVIACRVLREKLTNSVCAAFIGDDNIVHGVRSDPLMAERCAS 485 ++G T F NTL + +A L++ CA F GDD+++ L + S Sbjct 521 -QRRTGDAFTYFGNTL--VTMAMIAYASDLSDCDCAIFSGDDSLIISKVKPVLDTDMFTS 577 Query 486 WVNMEVKIIDATMCEKPPYFCGGFILYDKVTGSACRVADPLKRLFKLGKPLPAGDTQDED 545 NME+K++D ++ PY C F++ ++ G+ V DPL+ + +L K Sbjct 578 LFNMEIKVMDPSV----PYVCSKFLVETEM-GNLVSVPDPLREIQRLAK----------- 621 Query 546 RRRALKDE 553 R+ L+DE Sbjct 622 -RKILRDE 628 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Pepper mild mottle virus (strain Japan)] Sequence ID: P89657.1 Length: 1612 Range 1: 1198 to 1561 Score:52.0 bits(123), Expect:1e-05, Method:Compositional matrix adjust., Identities:90/384(23%), Positives:156/384(40%), Gaps:31/384(8%) Query 180 QPQVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTL-DSAVLNVECFKKFACNGEYW 238 +P +R+A P + L L A KRN N ++ + + D+A L V+ F Y Sbjct 1198 KPVIRTAAEKPRKPGLLENLVAMIKRNFNSPELVGVVDIEDTASLVVDKF-----FDAYL 1252 Query 239 QEFKDNPIRI---TTENITTYVTRLKGPKAAALFAKTHNLVPLQEVPMDRFVVDMKRDVK 295 + K P I + ++ ++ + + L + + L V R ++ K+ K Sbjct 1253 IKEKKKPKNIPLLSRASLERWIEKQEKSTIGQL--ADFDFIDLPAVDQYRHMI--KQQPK 1308 Query 296 VTPGTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLKAVLAPNIHTLFD----MSAE 351 E P +Q I A + EL R+L + + + E Sbjct 1309 QRLDLSIQTEYPALQTIVYHSKKINALFGPVFSELTRQLLETIDSSRFMFYTRKTPTQIE 1368 Query 352 DFDAIIAAHFQPGDAVLETDIASFDKSQddslaltalmlledlGVDQELLDLIEAAFGEI 411 +F + + ++ P D +LE DI+ +DKSQ++ + + LG+D L ++ + + Sbjct 1369 EFFSDLDSNV-PMD-ILELDISKYDKSQNEFHCAVEYEIWKRLGLDDFLAEVWKHGHRKT 1426 Query 412 TSVHLPTGTRFKFGAMMKSGMFLTLFVNTLLNIVIACRVLREKLTNSVCAAFIGDDNIVH 471 T G + KSG T NT+ I+ AC + + AF GDD+I++ Sbjct 1427 TLKDYTAGIKTCLWYQRKSGDVTTFIGNTI--IIAACLSSMLPMERLIKGAFCGDDSILY 1484 Query 472 GVRSD--PLMAERCASWVNMEVKIIDATMCEKPPYFCGGFILYDKVTGSACRV-ADPLKR 528 + P + + N E K+ ++ YFCG +I++ C V DPLK Sbjct 1485 FPKGTDFPDIQQGANLLWNFEAKLFR----KRYGYFCGRYIIHH---DRGCIVYYDPLKL 1537 Query 529 LFKLGKPLPAGDTQDEDRRRALKD 552 + KLG E+ R +L D Sbjct 1538 ISKLGAKHIKNREHLEEFRTSLCD 1561 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Odontoglossum ringspot virus (isolate Singapore 1)] Sequence ID: Q84133.2 Length: 1612 Range 1: 1153 to 1550 Score:52.0 bits(123), Expect:2e-05, Method:Compositional matrix adjust., Identities:94/420(22%), Positives:168/420(40%), Gaps:36/420(8%) Query 141 ITDEYDAYLDMVDGSESCLDRATFCPAKLRCYPKHHA-YHQPQVRSAVPSPFQNTLQNVL 199 I +EYDA + + + T +K P+ + P R+A P L L Sbjct 1153 ILNEYDAVTMNLRENNLNVKDCTIDFSKSVSVPRQQQEFFTPAHRTAAERPRSAGLLENL 1212 Query 200 AAATKRNCNVTQMRELPTLDSAVLNVECFKKFACNGEYWQEFKDNPIRITTENITTYVT- 258 A KRN N + + +L++E + N ++W + + ++ N+T + Sbjct 1213 VAMIKRNFNSPDL-------TGILDIEDTAELVVN-KFWDAYIID--ELSGGNVTPMTSD 1262 Query 259 ---RLKGPKAAALFAKTHNLVPLQEVPMDRFVVDMKRDVKVTPGTKHTEERPKVQVIQAA 315 R + + + + + +D++ +K K G +E +Q I Sbjct 1263 AFHRWMAKQEKSTIGQLADFDFVDLPAIDQYKHMIKAQPKQKLGLSPQDEYAALQTIVYH 1322 Query 316 EPLATAYLCGIHRELVRRLKAVLAPNIHTLFDMSAEDFDAIIAAHFQPGDA-----VLET 370 A + EL R+L + + + + I A F D+ VLE Sbjct 1323 SKQINAIFGPLFSELTRQLLERIDSSKFLFYTRKTPE---QIEAFFSDLDSTVPMEVLEL 1379 Query 371 DIASFDKSQddslaltalmlledlGVDQELLDLIEAAFGEITSVHLPTGTRFKFGAMMKS 430 DI+ +DKSQ++ ++ E LG++ L ++ + + + G + KS Sbjct 1380 DISKYDKSQNEFHCAVEYLIWEKLGLNGFLEEVWKQGHRKTSLKDYTAGIKTCLWYQRKS 1439 Query 431 GMFLTLFVNTLLNIVIACRVLREKLTNSVCAAFIGDDNIVH---GVRSDPLMAERCASWV 487 G T NT+ I+ AC + + AAF GDD+I++ G+ + + W Sbjct 1440 GDVTTFIGNTV--IIAACLASMIPMDKVIKAAFCGDDSILYIPKGLDLPDIQSGANLMW- 1496 Query 488 NMEVKIIDATMCEKPPYFCGGFILYDKVTGSACRVADPLKRLFKLG-KPLPAGDTQDEDR 546 N E K+ ++ YFCG +I++ A DPLK + KLG K + + D +E R Sbjct 1497 NFEAKLYR----KRYGYFCGRYIIHHD--RGAIVYYDPLKLISKLGCKHIKSLDHLEEFR 1550 >RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a [Cowpea chlorotic mottle virus] Sequence ID: P20179.1 Length: 808 Range 1: 293 to 632 Score:51.6 bits(122), Expect:2e-05, Method:Compositional matrix adjust., Identities:76/362(21%), Positives:137/362(37%), Gaps:27/362(7%) Query 178 YHQPQVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVLNV-ECFKKFACNGE 236 Y++P++ T + VL A KRN +V ++ + + V E FK+ N Sbjct 293 YYEPELSIGSFQRRIGTQKTVLTALKKRNADVPELADSVDIKRVACEVAEKFKRAYLNH- 351 Query 237 YWQEFKDNPIRITTENITTYVTRLKGPKAAALFAKTHNLVPLQEVPMDRFVVDMKRDVK- 295 + I + +++ L+ K + L E+ + R+ +K D+K Sbjct 352 -------SGIGLLGQSMDVMSRGLEYHKKWKDHKDLTGVTVLSEINLQRYQHMIKSDIKP 404 Query 296 VTPGTKHTEERPKVQVIQAAEPLATA---YLCGIHRELVRRLKAVLAPNIHTLFDMSAED 352 V T H E + + + + Y + + LK+ I + + ++ Sbjct 405 VVSDTLHLERAVAATITFHGKGVTSCFSPYFTACFEKFSKALKSRFVVPIGKISSLELKN 464 Query 353 FDAIIAAHFQPGDAVLETDIASFDKSQddslaltalmlledlGVDQELLDLIEAAFGEIT 412 LE D++ FDKSQ + +L LG L + E Sbjct 465 VPL-------SNKWFLEADLSKFDKSQGELHLEFQREILLSLGFPAPLTNWWCDFHRESM 517 Query 413 SVHLPTGTRFKFGAMMKSGMFLTLFVNTLLNIVIACRVLREKLTNSVCAAFIGDDNIVHG 472 G ++G T F NTL+ + + + CA F GDD+++ Sbjct 518 LSDPHAGVNMPVSFQRRTGDAFTYFGNTLVTMAMMAYCC--DMNTVDCAIFSGDDSLLIC 575 Query 473 VRSDPLMAERCASWVNMEVKIIDATMCEKPPYFCGGFILYDKVTGSACRVADPLKRLFKL 532 L A S NME+K++D ++ PY C F+L ++ + V DP++ + +L Sbjct 576 KSKPHLDANVFQSLFNMEIKVMDPSL----PYVCSKFLLETEM-NNLVSVPDPMREIQRL 630 Query 533 GK 534 K Sbjct 631 AK 632 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Pepper mild mottle virus (strain Spain)] Sequence ID: P29098.2 Length: 1612 Range 1: 1198 to 1561 Score:51.6 bits(122), Expect:2e-05, Method:Compositional matrix adjust., Identities:90/384(23%), Positives:156/384(40%), Gaps:31/384(8%) Query 180 QPQVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTL-DSAVLNVECFKKFACNGEYW 238 +P +R+A P + L L A KRN N ++ + + D+A L V+ F Y Sbjct 1198 KPVIRTAAEKPRKPGLLENLVAMIKRNFNSPELVGVVDIEDTASLVVDKF-----FDAYL 1252 Query 239 QEFKDNPIRI---TTENITTYVTRLKGPKAAALFAKTHNLVPLQEVPMDRFVVDMKRDVK 295 + K P I + ++ ++ + + L + + L V R ++ K+ K Sbjct 1253 IKEKKKPKNIPLLSRASLERWIEKQEKSTIGQL--ADFDFIDLPAVDQYRHMI--KQQPK 1308 Query 296 VTPGTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLKAVLAPNIHTLFD----MSAE 351 E P +Q I A + EL R+L + + + E Sbjct 1309 QRLDLSIQTEYPALQTIVYHSKKINALFGPVFSELTRQLLETIDSSRFMFYTRKTPTQIE 1368 Query 352 DFDAIIAAHFQPGDAVLETDIASFDKSQddslaltalmlledlGVDQELLDLIEAAFGEI 411 +F + + ++ P D +LE DI+ +DKSQ++ + + LG+D L ++ + + Sbjct 1369 EFFSDLDSNV-PMD-ILELDISKYDKSQNEFHCAVEYEIWKRLGLDDFLAEVWKHGHRKT 1426 Query 412 TSVHLPTGTRFKFGAMMKSGMFLTLFVNTLLNIVIACRVLREKLTNSVCAAFIGDDNIVH 471 T G + KSG T NT+ I+ AC + + AF GDD+I++ Sbjct 1427 TLKDYTAGIKTCLWYQRKSGDVTTFIGNTI--IIAACLSSMLPMERLIKGAFCGDDSILY 1484 Query 472 GVRSD--PLMAERCASWVNMEVKIIDATMCEKPPYFCGGFILYDKVTGSACRV-ADPLKR 528 + P + + N E K+ ++ YFCG +I++ C V DPLK Sbjct 1485 FPKGTDFPDIQQGANLLWNFEAKLFR----KRYGYFCGRYIIHH---DRGCIVYYDPLKL 1537 Query 529 LFKLGKPLPAGDTQDEDRRRALKD 552 + KLG E+ R +L D Sbjct 1538 ISKLGAKHIKNREHLEEFRTSLCD 1561 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Sunn-hemp mosaic virus] Sequence ID: P89202.2 Length: 1629 Range 1: 1208 to 1572 Score:51.2 bits(121), Expect:3e-05, Method:Compositional matrix adjust., Identities:91/386(24%), Positives:147/386(38%), Gaps:38/386(9%) Query 178 YHQPQVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVLNVECFKKFACNGEY 237 + +P + +AV P L L A KRN N + + L+ + + C+G + Sbjct 1208 FLRPLLNTAVEPPRIPGLLENLLALIKRNFNAPDL-------AGQLDYDFLSRKVCDGFF 1260 Query 238 WQ---------EFKDNPI--RITTENITTYVTRLKGPKAAALFAKTHNLVPLQEVPMDRF 286 + E P+ + +N ++ + + L H +P D++ Sbjct 1261 GKLLPPDVEASELLRLPVDHMYSVQNFDDWLNKQEPGVVGQLANWDHIGMP----AADQY 1316 Query 287 VVDMKRDVKVTPGTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLKAVLAPNIHTLF 346 +KR K E P +Q I A I L RL +V+ P F Sbjct 1317 RHMIKRTPKAKLDLSIQSEYPALQTIVYHSKHVNAVFGPIFSCLTERLLSVVDPLRFKFF 1376 Query 347 DMSAEDFDAIIAAHFQPGDA-VLETDIASFDKSQddslaltalmlledlGVDQELLDLIE 405 + GD +LE DI+ +DKSQ+ + + E LG+D+ + + E Sbjct 1377 TRTTPADLEFFFRDMVVGDMEILELDISKYDKSQNKFHFEVEMRIWEMLGIDKYIEKVWE 1436 Query 406 AAFGEITSVHLPTGTRFKFGAMMKSGMFLTLFVNTLLNIVIACRVL-REKLTNSVCAAFI 464 + G + KSG T NT++ C +L EK+ A F Sbjct 1437 NGHRKTHLRDYTAGIKTVIEYQRKSGDVTTFIGNTIIIAACLCSILPMEKVFK---AGFC 1493 Query 465 GDDNIVHGVRS--DPLMAERCASWVNMEVKIIDATMCEKPPYFCGGFILYDKVTGSACRV 522 GDD+I++ R+ P + + N E K+ YFCG + L + G R+ Sbjct 1494 GDDSIIYLPRNLLYPDIQSVSNNMWNFEAKLFKKLH----GYFCGRYXLRN---GRYLRL 1546 Query 523 A-DPLKRLFKLG-KPLPAGDTQDEDR 546 DPLK + KLG K + D +E R Sbjct 1547 LPDPLKIITKLGCKAIKDWDHLEEFR 1572 >RecName: Full=Replicase large subunit; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=Methyltransferase/RNA helicase [Potato mop-top virus Sw] Sequence ID: Q9QBU0.3 Length: 1812 Range 1: 1386 to 1728 Score:50.8 bits(120), Expect:4e-05, Method:Compositional matrix adjust., Identities:82/362(23%), Positives:142/362(39%), Gaps:27/362(7%) Query 181 PQVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVLNVECFKKFACNGEYWQE 240 P +R+A+P Q+ L L A KRN +++E +V F+ E ++ Sbjct 1386 PMLRTAMPEKRQSGLAEGLLALNKRNMAAPKLQE---------SVNEFEVIESTIEKAKK 1436 Query 241 FKDNPIRITTENITTYVTRLKGPKAAALFAKTHNLV---PLQEVPMDRFVVDMKRDVKVT 297 + RI + T+ + + A+ L L E+ + + +K DVK Sbjct 1437 VFFDESRIDNSKLETFEGAARWWVKQSCTAQKQMLADVRTLSEIDVTSYNFMIKGDVKPK 1496 Query 298 PGTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLKAVLAPNIHTLFDMSAEDFD-AI 356 E +Q + + + A I +E+ R++ L P++ M++++ D A+ Sbjct 1497 LDLSPQSEYSALQTVVYPDKIVNALFGPIMKEINERIRVALKPHVIYNTRMTSDELDPAV 1556 Query 357 IAAHFQPGDAVLETDIASFDKSQddslaltalmlledlGVDQELLDLIEAAFGEITSVHL 416 + +E D + FDKS+ + L + G+D+ + L E + + T Sbjct 1557 EFLDVREDHESVEIDFSKFDKSKTSLHIRVVIELYKLFGLDEMIAYLWEKSQCQTTIKDR 1616 Query 417 PTGTRFKFGAMMKSGMFLTLFVNTLLNIVIACRVLREKLTNSVCAAFIGDDNIVH----G 472 G + +SG T NT + L + F GDD+++ Sbjct 1617 VNGIIAQILYQQESGNCDTYGSNTW--SAALSLLESLPLEKATFMIFGGDDSLIFFPKGM 1674 Query 473 VRSDPLMAERCASWVNMEVKIIDATMCEKPPYFCGGFILYDKVTGSACRVADPLKRLFKL 532 V DP R AS N + K+ + K FCG F++ KV DP K L KL Sbjct 1675 VIEDP--CRRLASMWNFDCKLFNF----KNNSFCGKFLI--KVGEKYKFAPDPYKLLTKL 1726 Query 533 GK 534 G+ Sbjct 1727 GR 1728 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Tobacco mild green mosaic virus] Sequence ID: P18339.2 Length: 1609 Range 1: 1192 to 1536 Score:49.7 bits(117), Expect:7e-05, Method:Compositional matrix adjust., Identities:90/371(24%), Positives:152/371(40%), Gaps:43/371(11%) Query 180 QPQVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDS--AVLNVECFKKFACNGEY 237 +P +R+A P L L A KRN N + ++S +V+ + F + E Sbjct 1192 EPVLRTAAEPPRAAGLLENLVAMIKRNFNAPDLTGTIDIESTASVVVDKFFDSYFIKKEK 1251 Query 238 WQEFKDNPIRITTENITTYVTR------LKGPKAAALF-AKTHNLVPLQEVPMDRFVVDM 290 + T+NI +T+ L+ K L +N L + + ++ Sbjct 1252 Y-----------TKNIAGVMTKDSMMRWLENRKEVLLDDLANYNFTDLPAIDQYKHMIKA 1300 Query 291 KRDVKVTPGTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLKAVLAPNIHTLFDMSA 350 + K+ ++ E P +Q I L G EL R L F Sbjct 1301 QPKQKLDLSIQN--EYPALQTIVYHSKQINGILAGF-SELTRLLLEAFDSKKFLFFTRKT 1357 Query 351 ----EDFDAIIAAHFQPGDAVLETDIASFDKSQddslaltalmlledlGVDQELLDLIEA 406 ++F + + +H P D VLE DI+ +DKSQ++ + + LG+++ L ++ + Sbjct 1358 PEQIQEFFSDLDSHV-PMD-VLELDISKYDKSQNEFHCAVEYEIWKRLGLNEFLAEVWKQ 1415 Query 407 AFGEITSVHLPTGTRFKFGAMMKSGMFLTLFVNTLLNIVIACRVLREKLTNSVCAAFIGD 466 + T G + KSG T NT+ I+ AC + + AF GD Sbjct 1416 GHRKTTLKDYIAGIKTCLWYQRKSGDVTTFIGNTV--IIAACLGSMLPMEKVIKGAFCGD 1473 Query 467 DNIVHGVRS-DPLMAERCAS--WVNMEVKIIDATMCEKPPYFCGGFIL-YDKVTGSACRV 522 D++++ + D + CA+ W N E K+ ++ YFCG +I+ +DK A Sbjct 1474 DSVLYFPKGLDFPDIQSCANLMW-NFEAKLYR----KRYGYFCGRYIIHHDK---GAIVY 1525 Query 523 ADPLKRLFKLG 533 DPLK + KLG Sbjct 1526 YDPLKLISKLG 1536 >RecName: Full=RNA replication protein; Includes: RecName: Full=RNA-directed RNA polymerase; Includes: RecName: Full=Helicase; Includes: RecName: Full=Methyltransferase [Botrytis virus F NZL/Howitt] Sequence ID: Q9DRA1.1 Length: 1896 Range 1: 1631 to 1801 Score:47.8 bits(112), Expect:3e-04, Method:Compositional matrix adjust., Identities:48/185(26%), Positives:82/185(44%), Gaps:15/185(8%) Query 328 RELVRRLKAVLAPNIHTLFDMSAEDFDAIIAAHFQPGDAVLETDIASFDKSQddslalta 387 R + RR++A+L P+++ + EDF+ +AAH+ + D ++D SQD + Sbjct 1631 RYIDRRIRALLPPHVYIHSRRTNEDFEKFVAAHWDHTRESTDGDYTAYDASQDATFVNFE 1690 Query 388 lmlledlGVDQELLDLIEAAFGEITSVHLPTGTRFKFGAMMK-SGMFLTLFVNTLLNIVI 446 +L+ L LD+IEA S+ + F A+M+ SG T NTL NI Sbjct 1691 TLLMRRLDFP---LDIIEAYVEMKASI----TSHFGPLAIMRFSGEVWTYLFNTLGNIAF 1743 Query 447 ACRVLREKLTNSVCAAFIGDDNIVHGVRSDPLMAERCASWVNMEVKIIDATMCEKPPYFC 506 + SV + GDD ++ P+ S + + +++ + P FC Sbjct 1744 ---TYAKYEVPSVAQVYGGDDKSINS----PITVRTGWSQLVGKFNLVEKPVVGYEPTFC 1796 Query 507 GGFIL 511 G I+ Sbjct 1797 GWRIV 1801 >RecName: Full=Replicase large subunit; AltName: Full=209 kDa readthrough protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=150 kDa protein; AltName: Full=Methyltransferase/RNA helicase [Soil-borne wheat mosaic virus strain Nebraska] Sequence ID: Q89249.1 Length: 1828 Range 1: 1402 to 1805 Score:47.4 bits(111), Expect:4e-04, Method:Compositional matrix adjust., Identities:104/435(24%), Positives:163/435(37%), Gaps:49/435(11%) Query 181 PQVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVLNVECFKKFACNGEYWQE 240 P +R+A+P QN + A KRN P L AV E ++ + + Sbjct 1402 PVLRTAMPPKRQNLPVEAMLALKKRNMAA------PKLQEAVNEFEVIERTVNRAK--EI 1453 Query 241 FKDNPIRITTENITTYVTRLKGPKAAALFAKTH---NLVPLQEVPMDRFVVDMKRDVKVT 297 F D + I ++T + L+ K + AK L E+ + + +K D K Sbjct 1454 FFDTSL-IDDSEVSTRESNLRWWKRQSTTAKAQLKKETRLLHELDLCYYNYCIKGDEKPK 1512 Query 298 PGTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLKAVLAPNIHTLFDMSAEDFDAII 357 E +Q + + + A +E+ R++ L P++ M+AE+ + + Sbjct 1513 MDRSPQHEYGALQTVVFPDKIVNALFGPAMKEINERIRLALKPHVVYNSRMNAEELNRTV 1572 Query 358 AAHFQPGD--AVLETDIASFDKSQddslaltalmlledlGVDQELLDLIEAAFGEITSVH 415 P + E D + FDKS+ + L + G++ L E + + Sbjct 1573 -EFLDPEEDFNAFEIDFSKFDKSKTSLHIRAVIELYKLFGLNDLFALLWEKSQCQTKIRD 1631 Query 416 LPTGTRFKFGAMMKSGMFLTLFVNTLLNIVIACRVLREK--LTNSVCAAFIGDDNIV--- 470 G KSG T NT A L E L + F GDD+++ Sbjct 1632 FVNGITAYLLYQQKSGNCDTYGSNTW----SAALALLESMPLEKAKFMIFGGDDSLILFP 1687 Query 471 -HGVRSDPLMAERCASWVNMEVKIIDATMCEKPPYFCGGFILYDKVTGSACRVADPLKRL 529 H DP R AS N + K+ D K FCG F+L KV DP+K + Sbjct 1688 KHLTIEDP--CRRLASLWNFDCKLFDF----KHNMFCGKFLL--KVGDRFKFAPDPMKLI 1739 Query 530 FKLG-KPLPAGDTQDE------DRRRALKDETDRWARVGLKSELEIALSSRYEVNGTGNI 582 KLG K + G E D R+ +D + +L AL RY T + Sbjct 1740 TKLGRKDIVDGRLLSEIFVSVGDNYRSYRD-------YRILEQLTYALRERYRT--TEDP 1790 Query 583 VRAMATLAKSLKNFK 597 A+ L K + +FK Sbjct 1791 TAALVALKKYIFDFK 1805 >RecName: Full=RNA-directed RNA polymerase 2a; Short=2a pol; AltName: Full=2a polymerase [Tobacco streak virus (strain WC)] Sequence ID: P89678.1 Length: 800 Range 1: 296 to 626 Score:47.0 bits(110), Expect:4e-04, Method:Compositional matrix adjust., Identities:86/357(24%), Positives:134/357(37%), Gaps:43/357(12%) Query 194 TLQNVLAAATKRNCNVTQMRELPTLDSAVLNVECFKKFACNG-EYWQEFKDNPI------ 246 T + L A KRN NV +++ D VLN C +F + + + K NPI Sbjct 296 TQREALLAIKKRNMNVPELQSNFDHDD-VLN-RCVTRFITHVVDKTRLSKLNPISGEELH 353 Query 247 --RITTENITTYVTRLKGPKAAALFAKTHNLVPLQEVPMDRFVVDMKRDVKVTPGTKHTE 304 EN ++ KGP K +++ P++ + ++R + T T H Sbjct 354 YFNQYLENKNPPLSEYKGPVPLVALDKYMHMIKTTLKPVEEDNLHIERPIPATI-TYH-- 410 Query 305 ERPKVQVIQAAEPLATAYLCGIHRELVRRLKAVLAPN--IHTLFDMSAEDFDAIIAAHFQ 362 K V+ P +LC + R L + P H +F M+ E + H Sbjct 411 ---KKGVVMMTSPY---FLCAMVRLLYVLKSKFVVPTGKYHQIFQMNPE-----LLKH-- 457 Query 363 PGDAVLETDIASFDKSQddslaltalmlledlGVDQELLDLIEAAFGEITSVHLPTGTRF 422 E D + FDKSQ L LG+ + + + + G F Sbjct 458 -SKEFKEIDFSKFDKSQGRLHHDVQFRLFLALGIPEHFVTTWFNSHEKSYIRDRDCGIGF 516 Query 423 KFGAMMKSGMFLTLFVNTLLNIVIACRVLREKLTNSVCAAFIGDDNIVHGVRSDPLMAER 482 ++G T NTL+ + + V N + A GDD+++ + +PL E+ Sbjct 517 SVDYQRRTGDACTYLGNTLVTLSVLSYVYDLSNPNILFVAASGDDSLIGSI--EPLPREK 574 Query 483 ---CASWVNMEVKIIDATMCEKPPYFCGGFILY---DKVTGSACRVADPLKRLFKLG 533 C S N E K P+ C F+L D + V +PLK L KLG Sbjct 575 EDLCVSLFNFETK-----FPHNQPFICSKFLLVVECDDGSEEVLAVPNPLKLLQKLG 626 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Odontoglossum ringspot virus (isolate Korean Cy)] Sequence ID: P89659.2 Length: 1612 Range 1: 1153 to 1550 Score:47.0 bits(110), Expect:5e-04, Method:Compositional matrix adjust., Identities:98/426(23%), Positives:164/426(38%), Gaps:48/426(11%) Query 141 ITDEYDAYLDMVDGSESCLDRATFCPAKLRCYPKHHA-YHQPQVRSAVPSPFQNTLQNVL 199 I +EYDA + + + T +K P+ + P +R+A P L L Sbjct 1153 ILNEYDAVTMNLRENNLNVKDCTIDFSKSVSVPRQQQEFFTPVIRTAAERPRSRGLLENL 1212 Query 200 AAATKRNCNVTQMRELPTLDSAVLNVECFKKFACNGEYWQEFKDNPIRITTENITTYVTR 259 A KRN N + + +L++E + N ++W + I E VT Sbjct 1213 VAMIKRNFNSPDL-------TGILDIEDTAELVVN-KFWDAY------IIDELSGGNVTP 1258 Query 260 LKGPKAAALFAKTHNLVPLQEVPMDRFVVDM------KRDVKVTPGTKH----TEERPKV 309 + AK Q D VD+ K +K P K +E + Sbjct 1259 MTSDAFHRWMAKQEKSTIGQLADFD--FVDLPAIDQYKHMIKAQPKQKLDLSPQDEYAAL 1316 Query 310 QVIQAAEPLATAYLCGIHRELVRRLKAVLAPNIHTLFDMSAEDFDAIIAAHFQPGDA--- 366 Q I A + EL R+L + + + + I F D+ Sbjct 1317 QTIVYHSKQINAIFGPLFSELTRQLLERIDSSKFLFYTRKTPE---QIEEFFSDLDSTVP 1373 Query 367 --VLETDIASFDKSQddslaltalmlledlGVDQELLDLIEAAFGEITSVHLPTGTRFKF 424 VLE DI+ +DKSQ++ ++ E LG++ L ++ + + + G + Sbjct 1374 MEVLELDISKYDKSQNEFHCAVEYLIWEKLGLNGFLEEVWKQGHRKTSLKDYTAGIKTCL 1433 Query 425 GAMMKSGMFLTLFVNTLLNIVIACRVLREKLTNSVCAAFIGDDNIVH---GVRSDPLMAE 481 KSG T NT+ I+ AC + + AAF GDD++++ G+ + + Sbjct 1434 WYQRKSGDVTTFIGNTV--IIAACLASMIPMDKVIKAAFCGDDSMLYIPKGLDLPDIQSG 1491 Query 482 RCASWVNMEVKIIDATMCEKPPYFCGGFILYDKVTGSACRVADPLKRLFKLG-KPLPAGD 540 W N E K+ ++ YFCG +I++ A DP+K + KLG K + + D Sbjct 1492 ANLMW-NFEAKLYR----KRYGYFCGRYIIHHD--RGAIVYYDPVKLISKLGCKHIKSLD 1544 Query 541 TQDEDR 546 +E R Sbjct 1545 HLEEFR 1550 >RecName: Full=Replicase large subunit [Tobacco rattle virus-PSG] Sequence ID: P05079.1 Length: 179 Range 1: 24 to 170 Score:44.7 bits(104), Expect:6e-04, Method:Compositional matrix adjust., Identities:45/155(29%), Positives:68/155(43%), Gaps:11/155(7%) Query 448 CRVLRE-KLTNSVCAAFIGDDNIVHGVRSDPLM--AERCASWVNMEVKIIDATMCEKPPY 504 C +L E L +V + GDD+++ R + + A+ N E KI + P Sbjct 24 CALLSELPLEKAVMVTYGGDDSLIAFPRGTQFVDPCPKLATKWNFECKIFKYDV----PM 79 Query 505 FCGGFILYDKVTGSACRVADPLKRLFKLGKPLPAGDTQDEDRRRALKDETDRWARVGLKS 564 FCG F+L K + V DP+K L KLGK + +L D + S Sbjct 80 FCGKFLL--KTSSCYEFVPDPVKVLTKLGKKSIKDVQHLAEIYISLNDSNRALGNYMVVS 137 Query 565 ELEIALSSRYEVNGTGNIVRAMATLAKSLKNFKKL 599 +L ++S RY G+ V A+ L K +K+F L Sbjct 138 KLSESVSDRYLYK--GDSVHALCALWKHIKSFTAL 170 >RecName: Full=Replicase polyprotein 1ab; Contains: RecName: Full=Leader protease; Short=L-PRO; Contains: RecName: Full=Methyltransferase/helicase/RNA-directed RNA polymerase [Lettuce infectious yellows virus isolate 92] Sequence ID: Q83045.2 Length: 2379 Range 1: 2086 to 2305 Score:45.8 bits(107), Expect:0.001, Method:Compositional matrix adjust., Identities:53/229(23%), Positives:87/229(37%), Gaps:13/229(5%) Query 316 EPLATAYLCGIHRELVRRLKAVLAPNIHTLFDMSAEDFDAIIAAHFQPG---DAVLETDI 372 + + Y I E RL L+ I M+ + +I + G LE D Sbjct 2086 QQIVNLYFSPIFLECFARLTYCLSDKIVLYSGMNTDVLAELIESKLPLGLNAYHTLEIDF 2145 Query 373 ASFDKSQddslaltalmlledlGVDQELLDLIEAAFGEITSVHLPTGTRFKFGAMMKSGM 432 + FDKSQ L M+ + G EL D G + G ++G Sbjct 2146 SKFDKSQGTCFKLYEEMMYKMFGFSPELYDRDFKYTEYFCRAKATCGVDLELGTQRRTGS 2205 Query 433 FLTLFVNTLLNIVIACRVLREKLTNSVCAAFI-GDDNIVHGVRSDPLMAERCASWVNMEV 491 T NTL+ + + +L + + + GDD+++ + P + ME Sbjct 2206 PNTWLSNTLVTLGM---MLSSYDIDDIDLLLVSGDDSLIFSRKHLPNKTQEINKNFGMEA 2262 Query 492 KIIDATMCEKPPYFCGGFILYDKVTGSACRVADPLKRLFKLGKPLPAGD 540 K I+ + PYFC FI+ ++ G + DP++ KL P+ D Sbjct 2263 KYIEKS----SPYFCSKFIV--ELNGKLKVIPDPIRFFEKLSIPIRQED 2305 >RecName: Full=RNA-directed RNA polymerase; AltName: Full=216.5 kDa protein; AltName: Full=ORF1 protein; AltName: Full=RNA replicase [Apple chlorotic leaf spot virus (isolate APPLE)] Sequence ID: P54891.1 Length: 1885 Range 1: 1533 to 1798 Score:43.9 bits(102), Expect:0.005, Method:Compositional matrix adjust., Identities:73/295(25%), Positives:119/295(40%), Gaps:43/295(14%) Query 261 KGPKAAALFAKTHNLVPLQEVPMDRFVVDMKRDVKVTPGTKHTEERPKVQVIQAAEPLAT 320 K K+AA H+ + P+D+ + MK + + TE + A + LA Sbjct 1533 KLSKSAATIG-AHSQRSDSDWPLDKIFLFMKSQLCTKFEKRFTEAK-------AGQTLA- 1583 Query 321 AYLCGIHRELV------RRLKAVLAPN------IHTLFDMSA-EDFDAIIAAHFQPGDAV 367 C H+ LV R + VL N IH + S EDF A F G Sbjct 1584 ---CFPHKILVEFSPWCRYTEKVLTANLPDNYYIHQRKNFSELEDF----AKRFSNGSMC 1636 Query 368 LETDIASFDKSQddslaltalmlledlGVDQELLDLIEAAFGEITSVHLPTGTRFKFGAM 427 +E+D +FD SQD ++ + LL+ G D ++L + G R A+ Sbjct 1637 VESDYTAFDVSQDHTILAFEVELLKHFGWDDKVLQ-------SYIKMKCTLGCRLGGFAI 1689 Query 428 MK-SGMFLTLFVNTLLNIVIACRVLREKLTNSVCAAFIGDDNIVHGVRSDPLMAERCASW 486 M+ +G F T NTL N+V R ++ + F GDD + E S Sbjct 1690 MRFTGEFSTFLFNTLANMVFT--FCRYEVPDGTPICFAGDDMCALRNLREIDTHECILSK 1747 Query 487 VNMEVKIIDATMCEKPPYFCGGFILYDKVTGSACRVADPLKRLFKLGKPLPAGDT 541 ++++ K+ K P FCG + +D + C + + L+ + G+ + D+ Sbjct 1748 LSLKAKVNRT----KVPMFCGWRLCFDGLIKEPCLIYERLQVAIENGRLMDVIDS 1798 >RecName: Full=RNA-directed RNA polymerase; AltName: Full=216.5 kDa protein; AltName: Full=ORF1 protein; AltName: Full=RNA replicase [Apple chlorotic leaf spot virus (isolate PLUM P863)] Sequence ID: P27738.1 Length: 1884 Range 1: 1532 to 1797 Score:41.2 bits(95), Expect:0.033, Method:Compositional matrix adjust., Identities:73/295(25%), Positives:116/295(39%), Gaps:43/295(14%) Query 261 KGPKAAALFAKTHNLVPLQEVPMDRFVVDMKRDVKVTPGTKHTEERPKVQVIQAAEPLAT 320 K K+AA H+ + P+D+ + MK + + TE + A + LA Sbjct 1532 KLSKSAATIG-AHSQRSDSDWPLDKIFLFMKSQLCTKFEKRFTEAK-------AGQTLA- 1582 Query 321 AYLCGIHRELV------RRLKAVLAPN------IHTLFDMSA-EDFDAIIAAHFQPGDAV 367 C H+ LV R + VL N IH + S EDF A F G Sbjct 1583 ---CFPHKILVEFSPWCRYTEKVLTANLPDNYYIHQRKNFSELEDF----ARRFSNGSIC 1635 Query 368 LETDIASFDKSQddslaltalmlledlGVDQELLDLIEAAFGEITSVHLPTGTRFKFGAM 427 +E+D +FD SQD ++ + LL G D +L + G R A+ Sbjct 1636 VESDYTAFDVSQDHTILAFEVELLRHFGWDDRVLQ-------SYIKMKCTLGCRLGGFAI 1688 Query 428 MK-SGMFLTLFVNTLLNIVIACRVLREKLTNSVCAAFIGDDNIVHGVRSDPLMAERCASW 486 M+ +G F T NTL N+V R ++ + F GDD + E S Sbjct 1689 MRFTGEFSTFLFNTLANMVFT--FCRYEVPDGTPICFAGDDMCALRNLREIDTHEFILSK 1746 Query 487 VNMEVKIIDATMCEKPPYFCGGFILYDKVTGSACRVADPLKRLFKLGKPLPAGDT 541 ++++ K+ K P FCG + D + C + + L+ + G+ + D+ Sbjct 1747 LSLKAKVNRT----KVPMFCGWRLCCDGLIKEPCLIYERLQVAIENGRLMDVIDS 1797