## DeepTMHMM - Predictions
Predicted topologies can be downloaded in [.gff3 format](TMRs.gff3) and [.3line format](predicted_topologies.3line)
![picture](plot.png)
You can download the probabilities used to generate this plot [here](2X55_1|Chain_probs.csv)
### Predicted Topologies
```
>2X55_1|Chain | BETA
ASSQLIPNISPDSFTVAASTGMLSGKSHEMLYDAETGRKISQLDWKIKNVAILKGDISWDPYSFLTLNARGWTSLASGSGNMDDYDWMNENQSEWTDHSSHPATNVNHANEYDLNVKGWLLQDENYKAGITAGYQETRFSWTATGGSYSYNNGAYTGNFPKGVRVIGYNQRFSMPYIGLAGQYRINDFELNALFKFSDWVRAHDNDEHYMRDLTFREKTSGSRYYGTVINAGYYVTPNAKVFAEFTYSKYDEGKGGTQTIDKNSGDSVSIGGDAAGISNKNYTVTAGLQYRFG
SSSSSSSSSSPPPBBBBBBBBBBBBBOOOOOOOOOOOOOOOOOOOOBBBBBBBBBBBBBPPPPPBBBBBBBBBBBBBBOOOOOOOOOOOOOOOOOOOOOOOOOOOOOBBBBBBBBBBBBPPPPPPPPBBBBBBBBBBBBOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOBBBBBBBBBBBBPPPPPPBBBBBBBBBBBBBOOOOOOOOOOOOOOOOOOOOBBBBBBBBBBBBPPPPPPBBBBBBBBBOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOBBBBBBBBBBBBPPP

```


```
##gff-version 3
# 2X55_1|Chain Length: 293
# 2X55_1|Chain Number of predicted TMRs: 10
2X55_1|Chain	signal	1	10				
2X55_1|Chain	periplasm	11	13				
2X55_1|Chain	Beta sheet	14	26				
2X55_1|Chain	outside	27	46				
2X55_1|Chain	Beta sheet	47	59				
2X55_1|Chain	periplasm	60	64				
2X55_1|Chain	Beta sheet	65	78				
2X55_1|Chain	outside	79	107				
2X55_1|Chain	Beta sheet	108	119				
2X55_1|Chain	periplasm	120	127				
2X55_1|Chain	Beta sheet	128	139				
2X55_1|Chain	outside	140	170				
2X55_1|Chain	Beta sheet	171	182				
2X55_1|Chain	periplasm	183	188				
2X55_1|Chain	Beta sheet	189	201				
2X55_1|Chain	outside	202	221				
2X55_1|Chain	Beta sheet	222	233				
2X55_1|Chain	periplasm	234	239				
2X55_1|Chain	Beta sheet	240	248				
2X55_1|Chain	outside	249	278				
2X55_1|Chain	Beta sheet	279	290				
2X55_1|Chain	periplasm	291	293				

```