FastQCFastQC Report
Tue 6 Dec 2016
chr5_out.fastq

Summary

[OK]Basic Statistics

MeasureValue
Filenamechr5_out.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8114
Sequences flagged as poor quality0
Sequence length50-100
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.2)