TBLASTN 2.2.28+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: X5.fasta 1,868 sequences; 23,962,143 total letters Query= COX1_DROME P00399 Cytochrome c oxidase subunit 1 (1.9.3.1) (Cytochrome c oxidase polypeptide I) Length=511 Score E Sequences producing significant alignments: (Bits) Value unplaced-887 226 5e-63 scaffold-17 43.5 2e-04 scaffold-85 33.9 0.20 scaffold-104 31.2 1.3 unplaced-991 29.6 4.1 > unplaced-887 Length=30515 Score = 226 bits (575), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 123/234 (53%), Positives = 169/234 (72%), Gaps = 10/234 (4%) Frame = -2 Query 282 GFIVWAHHMFTVGMDVDTRAYFTSATMIIAVPTGIKIFSWLATLHGTQLSYSPAILWALG 341 G ++ HHM+TVG+DVDTR+YF++ATMIIAVPTGIKIFSW+ATL G ++++S IL+ +G Sbjct 24382 GKYIFRHHMYTVGLDVDTRSYFSAATMIIAVPTGIKIFSWIATLAGGRINFSSPILFIIG 24203 Query 342 FVFLFTVGGLTGVVLANSSVDIILHDTYYVVAHFHYVLSMGAVFAIMAGFIHWYPLFTGL 401 F+ LFT+GGLTGVVL+N+ +D+ LHDTYYVVAHFHYVLSMGAVFA+ AGF +WYP T Sbjct 24202 FLILFTLGGLTGVVLSNAPLDVSLHDTYYVVAHFHYVLSMGAVFALFAGFYYWYPTITHK 24023 Query 402 TLNNKWLKSHFIIMFIGVNLTFFPQHFLGLAGMPRRYSDYPDAYTTWNIVSTIGSTisll 461 N W K HF ++FIGVN+TF P H LG+AG PRR DYPD++ N +++ GS IS + Sbjct 24022 MSNELWAKIHFALIFIGVNVTFGPMHILGMAGHPRRILDYPDSFLGINQLASFGSFISFI 23843 Query 462 gilffffiiWESLVSQRQVIY----PIQLNSSIEWYQNTPPAEHSYSELPLLTN 511 I+ F I+ S +VIY L+++++ Y+ HS++ +P++ Sbjct 23842 SIIPFLLSIYFS----NKVIYNNLSSFSLDNTVQLYKYY--HHHSFNTIPVINK 23699 Score = 216 bits (549), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 119/199 (60%), Positives = 151/199 (76%), Gaps = 11/199 (6%) Frame = -3 Query 127 YPPLSAGIAHGGASVDLAIFSLHLAGISSILGAVNFITTVINMRSTGISLDRMPLFVWSV 186 YPPLS+ + H G SVDL IF+LHLAGISS+LG++N+I +VIN+R+ G+S ++ L+VWS+ Sbjct 25869 YPPLSSILYHSGFSVDLGIFALHLAGISSMLGSINYIVSVINLRAPGLSYSQLNLYVWSL 25690 Query 187 VITAlllllslpvlAGAITMLLTDRNLNTSFFDPAGGGDPILYQHLFWFFGHPEVYILIL 246 VITA+LL+L+LPVLAG ITMLLTDRN NTSF++ GGDP+LYQHLFWFFGHPEVYI+IL Sbjct 25689 VITAILLILALPVLAGGITMLLTDRNWNTSFYEIQAGGDPVLYQHLFWFFGHPEVYIIIL 25510 Query 247 PGFGMISHIISQESGKKETFGSLGMIYAMLAIGLLGFIVWAHHMFTVGMDVDTRAYFTSA 306 PGFG++SHIIS + + FG LGMI+AML+IGLLGF+VWA M F S Sbjct 25509 PGFGIVSHIISSLT-NRPIFGKLGMIFAMLSIGLLGFLVWAQMM----------GLFDSD 25363 Query 307 TMIIAVPTGIKIFSWLATL 325 +I IF +L+TL Sbjct 25362 VKVINFAICWNIFIYLSTL 25306 Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 41/90 (46%), Positives = 60/90 (67%), Gaps = 3/90 (3%) Frame = -1 Query 3 QWLFSTNHKDIGTLYFIFGAWAGMVGTSLSILIRAEL---GHPGALIGDDQIYNVIVTAH 59 +WL+ST+ +DIG LY I A +GM+GT +S+LIR +L L +Q YN I+T H Sbjct 28679 KWLYSTDARDIGVLYLILSALSGMLGTMMSLLIRLQLMDVNQTEVLNLPNQAYNTIITVH 28500 Query 60 AfimiffmvmpimiggfgNWLVPLMLGAPD 89 A +MIF+++MP + G FGN +P ++GA D Sbjct 28499 ALLMIFYLIMPALFGAFGNIFLPTLIGAMD 28410 Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust. Identities = 21/41 (51%), Positives = 28/41 (68%), Gaps = 0/41 (0%) Frame = -1 Query 86 GAPDMAFPRMNNMSFWllppalslllvssMVENGAGTGWTV 126 G MAFPR+NN+SFWLL +L L + + + G GTGWT+ Sbjct 27155 GNKSMAFPRLNNVSFWLLFSSLILAVSAMTLGEGIGTGWTM 27033 > scaffold-17 Length=2125590 Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/52 (46%), Positives = 29/52 (56%), Gaps = 8/52 (15%) Frame = -1 Query 397 LFTGLTLNNKWLKSHFIIMFIGVNLTFFPQHFLGLAGMPRRYSDYPDAYTTW 448 L + LTL N +K F+I+ +FLG GMPRRY DYPDAY W Sbjct 1010493 LMSFLTLEND*IKLVFVIII--------QHYFLG*RGMPRRYLDYPDAYLGW 1010362 Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust. Identities = 20/59 (34%), Positives = 29/59 (49%), Gaps = 6/59 (10%) Frame = -3 Query 270 GMIYAMLAIGLLGFIVWA-----HHMFTVGMDVDTRAYFTSATM-IIAVPTGIKIFSWL 322 G +Y MLA LL ++ HH F + +D T +YF + T+ I V G + WL Sbjct 1068688 GALYYMLARALLVPVL*CSCKIFHHTFILWLDAPTLSYFPNVTLSFITVEAGPQRLHWL 1068512 > scaffold-85 Length=662615 Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust. Identities = 17/40 (43%), Positives = 22/40 (55%), Gaps = 0/40 (0%) Frame = +3 Query 268 SLGMIYAMLAIGLLGFIVWAHHMFTVGMDVDTRAYFTSAT 307 LG + ML++ LL IV AHH+ + D TRAY T Sbjct 390885 KLGCLLHMLSVILLQVIV*AHHLLQLNTDHLTRAYCARTT 391004 > scaffold-104 Length=736462 Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust. Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 0/40 (0%) Frame = -3 Query 268 SLGMIYAMLAIGLLGFIVWAHHMFTVGMDVDTRAYFTSAT 307 LG + ML++ LL IV AHH+ + + TRAY T Sbjct 140687 ELGCLLHMLSVILLQVIV*AHHLLQLHTNHLTRAYCARTT 140568 > unplaced-991 Length=39134 Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust. Identities = 10/19 (53%), Positives = 16/19 (84%), Gaps = 0/19 (0%) Frame = +3 Query 239 PEVYILILPGFGMISHIIS 257 PEVY+ + P FG++SH++S Sbjct 15606 PEVYV*V*PAFGIVSHVLS 15662 Lambda K H a alpha 0.326 0.140 0.452 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 3188909605 Database: X5.fasta Posted date: Nov 5, 2019 11:58 AM Number of letters in database: 23,962,143 Number of sequences in database: 1,868 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40