BLASTP 2.2.28+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: all.fasta 23,494 sequences; 6,760,419 total letters Query= sp|P0A6H1|CLPX_ECOLI ATP-dependent Clp protease ATP-binding subunit ClpX OS=Escherichia coli (strain K12) OX=83333 GN=clpX PE=1 SV=2 Length=424 Score E Sequences producing significant alignments: (Bits) Value sp|Q2RL30|CLPX_MOOTA ATP-dependent Clp protease ATP-binding sub... 533 0.0 sp|A5I6W0|CLPX_CLOBH ATP-dependent Clp protease ATP-binding sub... 530 0.0 sp|Q81LB9|CLPX_BACAN ATP-dependent Clp protease ATP-binding sub... 513 2e-180 sp|Q5HNM9|CLPX_STAEQ ATP-dependent Clp protease ATP-binding sub... 499 4e-175 sp|Q833M7|CLPX_ENTFA ATP-dependent Clp protease ATP-binding sub... 498 2e-174 sp|Q9CGE6|CLPX_LACLA ATP-dependent Clp protease ATP-binding sub... 490 1e-171 sp|P63791|CLPX_STRPN ATP-dependent Clp protease ATP-binding sub... 486 5e-170 tr|Q5FKR6|Q5FKR6_LACAC ATP-dependent Clp protease ATP-binding s... 484 3e-169 sp|Q834K4|HSLU_ENTFA ATP-dependent protease ATPase subunit HslU... 103 4e-24 sp|Q5FKD8|HSLU_LACAC ATP-dependent protease ATPase subunit HslU... 101 1e-23 tr|Q2RJP5|Q2RJP5_MOOTA ATP-dependent protease ATPase subunit Hs... 100 4e-23 sp|Q81WK6|HSLU_BACAN ATP-dependent protease ATPase subunit HslU... 98.2 2e-22 sp|Q5HPT8|HSLU_STAEQ ATP-dependent protease ATPase subunit HslU... 93.6 8e-21 tr|A5I766|A5I766_CLOBH ATP-dependent zinc metalloprotease FtsH ... 52.0 3e-07 tr|Q2RLR4|Q2RLR4_MOOTA AAA domain-containing protein OS=Moorell... 50.1 6e-07 tr|A0A0H2USJ7|A0A0H2USJ7_STRPN ATP-dependent Clp protease, ATP-... 50.4 7e-07 tr|Q5FHW6|Q5FHW6_LACAC UVR domain-containing protein OS=Lactoba... 48.9 2e-06 tr|Q2RLP6|Q2RLP6_MOOTA AAA domain-containing protein OS=Moorell... 48.5 2e-06 tr|A5I7Q0|A5I7Q0_CLOBH ATP-dependent zinc metalloprotease FtsH ... 46.2 1e-05 sp|O69076|FTSH_STRPN ATP-dependent zinc metalloprotease FtsH OS... 46.2 2e-05 tr|A0A347ZXP1|A0A347ZXP1_BACAN ATP-dependent zinc metalloprotea... 43.1 1e-04 tr|Q2RM95|Q2RM95_MOOTA ATP-dependent zinc metalloprotease FtsH ... 43.1 2e-04 tr|A0A1Q4LW06|A0A1Q4LW06_BACAN AAA domain-containing protein OS... 42.4 2e-04 sp|P46469|FTSH_LACLA ATP-dependent zinc metalloprotease FtsH OS... 42.7 2e-04 tr|Q5FMA3|Q5FMA3_LACAC ATP-dependent zinc metalloprotease FtsH ... 42.4 2e-04 sp|Q5HPD3|Y979_STAEQ Uncharacterized protein SERP0979 OS=Staphy... 41.6 3e-04 tr|A5I501|A5I501_CLOBH AAA domain-containing protein OS=Clostri... 41.6 3e-04 tr|Q839B1|Q839B1_ENTFA ATP-dependent zinc metalloprotease FtsH ... 41.6 4e-04 tr|A5HYU4|A5HYU4_CLOBH ATP-dependent zinc metalloprotease FtsH ... 41.2 5e-04 tr|Q5HRP3|Q5HRP3_STAEQ ATP-dependent zinc metalloprotease FtsH ... 41.2 6e-04 sp|Q9CI09|CLPE_LACLA ATP-dependent Clp protease ATP-binding sub... 40.8 7e-04 tr|Q2RJJ8|Q2RJJ8_MOOTA AAA domain-containing protein OS=Moorell... 40.4 0.001 > sp|Q2RL30|CLPX_MOOTA ATP-dependent Clp protease ATP-binding subunit ClpX OS=Moorella thermoacetica (strain ATCC 39073 / JCM 9320) OX=264732 GN=clpX PE=3 SV=1 Length=419 Score = 533 bits (1373), Expect = 0.0, Method: Compositional matrix adjust. Identities = 257/409 (63%), Positives = 332/409 (81%), Gaps = 4/409 (1%) Query 4 KRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRERSA 63 K D G+L CSFCGK Q +V+KL+AGP VYICDEC++LCN+II EE+ E + E Sbjct 3 KYTDDKGQL-KCSFCGKLQDQVKKLVAGPGVYICDECIELCNEIIEEELSE-DLNLEMGE 60 Query 64 LPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGS 123 LP P EIR LD YVI Q+QAKK LAVAVYNHYKR+ G + VEL KSNI+++GPTGS Sbjct 61 LPKPKEIREILDQYVISQDQAKKALAVAVYNHYKRINLGMKMDDVELQKSNIIMLGPTGS 120 Query 124 GKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYI 183 GKTLLA+TLA++L+VPF +ADAT+LTEAGYVGEDVENI+ KL+Q DYDV+KA++GIVYI Sbjct 121 GKTLLAQTLAKILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIVYI 180 Query 184 DEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKI 243 DEIDKI+RKS+NPSITRDVSGEGVQQALLK++EGT+A+VPPQGGRKHP QEF+Q+DT+ I Sbjct 181 DEIDKIARKSENPSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPHQEFIQLDTTNI 240 Query 244 LFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPE 303 LFICGGAF GLDK+I +R+ + +GFGA ++ K+D G++L QV P DL+K+GLIPE Sbjct 241 LFICGGAFDGLDKIIKNRISQKT-MGFGAEIRGKND-VQVGDILKQVLPVDLLKYGLIPE 298 Query 304 FIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAM 363 F+GRLPV+ TL+ L E ALI++L EP+NAL KQYQ LF ++GV LEF+++AL IA++A+ Sbjct 299 FVGRLPVIVTLDALDETALIRVLTEPRNALVKQYQKLFEMDGVTLEFKEDALVTIAREAI 358 Query 364 ARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLI 412 R+TGARGLR+I+E +LD MY++PS ++ K +I + V+ + +PLL+ Sbjct 359 KRETGARGLRAILEEIMLDVMYEIPSRNNISKCIITKDVVLRKEEPLLL 407 > sp|A5I6W0|CLPX_CLOBH ATP-dependent Clp protease ATP-binding subunit ClpX OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) OX=441771 GN=clpX PE=3 SV=1 Length=429 Score = 530 bits (1366), Expect = 0.0, Method: Compositional matrix adjust. Identities = 258/402 (64%), Positives = 328/402 (82%), Gaps = 4/402 (1%) Query 11 KLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRERSALPTPHEI 70 K L CSFCGK+Q +VR+LIAGP VYICDEC++LC++II +E ++ + ++LP P EI Sbjct 8 KQLKCSFCGKTQDQVRRLIAGPGVYICDECIELCSEIINDEFEDDI-QVDLTSLPKPTEI 66 Query 71 RNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAE 130 + +LD YVIGQE AKK L+VAVYNHYKR+ + ++ VEL KSNILL+GPTGSGKTLLA+ Sbjct 67 KTYLDQYVIGQEDAKKSLSVAVYNHYKRINSNTNNDDVELQKSNILLLGPTGSGKTLLAQ 126 Query 131 TLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDEIDKIS 190 TLA+ L+VPF +ADATTLTEAGYVGEDVENI+ KL+Q DYD++KA++GIVYIDEIDKI+ Sbjct 127 TLAKFLNVPFAIADATTLTEAGYVGEDVENILLKLIQNADYDIEKAEKGIVYIDEIDKIA 186 Query 191 RKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGA 250 RKS+NPSITRDVSGEGVQQALLK++EGTVAAVPPQGGRKHP QEF+Q++T+ ILFICGGA Sbjct 187 RKSENPSITRDVSGEGVQQALLKILEGTVAAVPPQGGRKHPHQEFIQINTTNILFICGGA 246 Query 251 FAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPV 310 F G+DK+I R T S +GFGA +++K +K G+LL + P DL+KFGLIPEFIGRLP+ Sbjct 247 FDGVDKIIERRTRT-SSLGFGAEIQSKKEK-DLGKLLKDIMPGDLLKFGLIPEFIGRLPI 304 Query 311 VATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGAR 370 V TL++L EALI+IL EPKNAL KQY+ LF L+ V+LEF EAL IA +A+ R TGAR Sbjct 305 VVTLDKLDREALIKILTEPKNALVKQYKKLFELDDVELEFNQEALKEIADEAINRNTGAR 364 Query 371 GLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLI 412 GLR+I+E + + M+D+PS E++ KV+++E I + KP LI Sbjct 365 GLRAIIEDMMREIMFDIPSQENIGKVIVNEDCIKTK-KPELI 405 > sp|Q81LB9|CLPX_BACAN ATP-dependent Clp protease ATP-binding subunit ClpX OS=Bacillus anthracis OX=1392 GN=clpX PE=3 SV=1 Length=419 Score = 513 bits (1321), Expect = 2e-180, Method: Compositional matrix adjust. Identities = 252/409 (62%), Positives = 323/409 (79%), Gaps = 5/409 (1%) Query 4 KRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRERSA 63 K D G+L CSFCGK+Q +VRKL+AGP VYICDEC++LC +I++EE+ + E Sbjct 3 KFNDEKGQL-KCSFCGKTQTQVRKLVAGPGVYICDECIELCTEIVQEELAK-DEEVEFKD 60 Query 64 LPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGS 123 +P P EIR LD+YVIGQ+ AKK LAVAVYNHYKR+ + + VEL KSNI LIGPTGS Sbjct 61 VPKPVEIREILDEYVIGQDNAKKALAVAVYNHYKRINSNSKIDDVELAKSNIALIGPTGS 120 Query 124 GKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYI 183 GKTLLA+TLAR+L+VPF +ADAT+LTEAGYVGEDVENI+ KL+Q DYDV+KA++GI+YI Sbjct 121 GKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIYI 180 Query 184 DEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKI 243 DEIDK++RKS+NPSITRDVSGEGVQQALLK++EGTVA+VPPQGGRKHP QEF+Q+DT+ I Sbjct 181 DEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNI 240 Query 244 LFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPE 303 LFICGGAF G++ +I R+ IGFG+ + K+ +E +L+ V PEDL++FGLIPE Sbjct 241 LFICGGAFDGIEPIIKRRLGEKV-IGFGS--EKKNADVNEKHVLSHVLPEDLLRFGLIPE 297 Query 304 FIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAM 363 FIGRLPV+A L L E+AL+ IL +PKNAL KQ+Q L L+ V+LEF + AL IAKKA+ Sbjct 298 FIGRLPVIANLEPLDEDALVDILTKPKNALVKQFQKLLELDDVELEFEEGALIEIAKKAI 357 Query 364 ARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLI 412 RKTGARGLRSI+E +L+ M++LPS +D+EK ++ + + + P L+ Sbjct 358 ERKTGARGLRSIIEGLMLEVMFELPSRKDIEKCILTKETVADNAAPKLV 406 > sp|Q5HNM9|CLPX_STAEQ ATP-dependent Clp protease ATP-binding subunit ClpX OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) OX=176279 GN=clpX PE=3 SV=1 Length=420 Score = 499 bits (1285), Expect = 4e-175, Method: Compositional matrix adjust. Identities = 246/400 (62%), Positives = 313/400 (78%), Gaps = 6/400 (2%) Query 13 LYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRERSALPTPHEIRN 72 L CSFCGK Q +V+KL+AG VYIC+EC++LC++I+ EE+ + + LPTP EI + Sbjct 11 LKCSFCGKDQDQVKKLVAGSGVYICNECIELCSEIVEEELAQNTSEG-FTELPTPKEIMD 69 Query 73 HLDDYVIGQEQAKKVLAVAVYNHYKRLRN-GDTSNGVELGKSNILLIGPTGSGKTLLAET 131 HL++YVIGQE+AKK LAVAVYNHYKR++ G + VEL KSNI LIGPTGSGKTLLA+T Sbjct 70 HLNEYVIGQEKAKKSLAVAVYNHYKRIQQLGPNEDDVELQKSNIALIGPTGSGKTLLAQT 129 Query 132 LARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDEIDKISR 191 LA+ L+VPF +ADAT+LTEAGYVG+DVENI+ +L+Q D+D+ KA++GI+Y+DEIDKI+R Sbjct 130 LAKTLNVPFAIADATSLTEAGYVGDDVENILLRLIQAADFDIDKAEKGIIYVDEIDKIAR 189 Query 192 KSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAF 251 KS+N SITRDVSGEGVQQALLK++EGT A+VPPQGGRKHP QE +Q+DT+ ILFI GGAF Sbjct 190 KSENTSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPNQELIQIDTTNILFILGGAF 249 Query 252 AGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVV 311 G+D+VI R+ IGF + ++DK E LL Q+ PEDL +GLIPEFIGR+P+V Sbjct 250 DGIDEVIKRRL-GEKVIGFASN---EADKYDEEALLEQIRPEDLQSYGLIPEFIGRVPIV 305 Query 312 ATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARG 371 A L L AL IL +PKNAL KQY + L+ V+LEF +EAL AI++KA+ RKTGARG Sbjct 306 ANLETLDVAALKNILTQPKNALVKQYTKMLELDNVELEFSEEALSAISEKAIERKTGARG 365 Query 372 LRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLL 411 LRSI+E AL+D MYD+PS E+V KVVI E I+ + +P L Sbjct 366 LRSIIEEALIDIMYDVPSSENVSKVVITEQTINEEIEPEL 405 > sp|Q833M7|CLPX_ENTFA ATP-dependent Clp protease ATP-binding subunit ClpX OS=Enterococcus faecalis (strain ATCC 700802 / V583) OX=226185 GN=clpX PE=3 SV=1 Length=417 Score = 498 bits (1281), Expect = 2e-174, Method: Compositional matrix adjust. Identities = 248/408 (61%), Positives = 324/408 (79%), Gaps = 8/408 (2%) Query 15 CSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRERSALPTPHEIRNHL 74 CSFCGK+Q EV+K++AGP VYIC+EC+DLC +II EE + A RE + +P P EI N L Sbjct 13 CSFCGKTQEEVKKIVAGPGVYICNECIDLCKEIIDEEFYDEAV-RELTDVPKPQEILNVL 71 Query 75 DDYVIGQEQAKKVLAVAVYNHYKRLRNGDTS---NGVELGKSNILLIGPTGSGKTLLAET 131 ++YVIGQE+AK+ L+VAVYNHYKR+ +T+ + VEL KSNI LIGPTGSGKT LA+T Sbjct 72 NEYVIGQERAKRTLSVAVYNHYKRVNQSETAATQDDVELQKSNICLIGPTGSGKTFLAQT 131 Query 132 LARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDEIDKISR 191 LA+ L+VPF +ADAT+LTEAGYVGEDVENI+ KLLQ DY+V++A++GI+YIDEIDKI+R Sbjct 132 LAKTLNVPFAIADATSLTEAGYVGEDVENILLKLLQSADYNVERAEKGIIYIDEIDKIAR 191 Query 192 KSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAF 251 KS+N SITRDVSGEGVQQALLK++EGTVA+VPPQGGRKHP QEF+Q+DT+ +LFI GGAF Sbjct 192 KSENVSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNVLFIVGGAF 251 Query 252 AGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVV 311 G++ ++ +R+ + IGFG T A +++ S ++ + PEDL+KFGLIPEFIGRLPV+ Sbjct 252 DGIETIVKNRLGEKT-IGFGKTNSALNEEES---IMQHIIPEDLLKFGLIPEFIGRLPVM 307 Query 312 ATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARG 371 A L++L+ + L++IL EPKNAL KQYQ L +L+ LEF EAL AIA KA+ R TGARG Sbjct 308 AALDKLTNDDLVRILTEPKNALVKQYQKLLSLDDTKLEFEPEALKAIAAKAIERNTGARG 367 Query 372 LRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGKPEAQ 419 LRSI+E ++D M+D+PS E +EKV+I + +G KP +IY K + + Sbjct 368 LRSIIEEIMMDVMFDVPSDESIEKVIITKMAAEGTGKPTIIYNKKDKE 415 > sp|Q9CGE6|CLPX_LACLA ATP-dependent Clp protease ATP-binding subunit ClpX OS=Lactococcus lactis subsp. lactis (strain IL1403) (Streptococcus lactis) OX=272623 GN=clpX PE=3 SV=1 Length=411 Score = 490 bits (1262), Expect = 1e-171, Method: Compositional matrix adjust. Identities = 244/402 (61%), Positives = 317/402 (79%), Gaps = 7/402 (2%) Query 13 LYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRERSALPTPHEIRN 72 ++CSFCGKSQ +V+KLIAG VYIC+EC++L I+ EE E + TP E+ + Sbjct 9 IHCSFCGKSQDDVKKLIAGSDVYICNECIELSTRILEEE-LREEQDSEMLEVKTPKEMFD 67 Query 73 HLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDT--SNGVELGKSNILLIGPTGSGKTLLAE 130 HL++YVIGQE+AK+ LAVAVYNHYKR+ + + +EL KSNILLIGPTGSGKT LA+ Sbjct 68 HLNEYVIGQEKAKRALAVAVYNHYKRINFAASKIAEDIELQKSNILLIGPTGSGKTFLAQ 127 Query 131 TLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDEIDKIS 190 TLA+ L+VPF +ADAT+LTEAGYVGEDVENI+ KLLQ D+++++A+RGI+YIDEIDKI+ Sbjct 128 TLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLLQASDFNIERAERGIIYIDEIDKIA 187 Query 191 RKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGA 250 +KS+N SITRDVSGEGVQQALLK+IEGTVA+VPPQGGRKHP QE +Q+DT ILFI GGA Sbjct 188 KKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQIDTKNILFIVGGA 247 Query 251 FAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPV 310 F G+++++ R+ IGFGA K +D S + ++ ED+ KFGLIPEFIGRLP+ Sbjct 248 FDGIEEIVKQRL-GEKIIGFGANNKKLNDDDS---YMQEIIAEDIQKFGLIPEFIGRLPI 303 Query 311 VATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGAR 370 VA L L+EE LIQIL EPKNAL KQY+ L + V+LEF DEAL AIA+KA+ RKTGAR Sbjct 304 VAALERLTEEDLIQILTEPKNALIKQYKQLLLFDNVELEFEDEALMAIARKAIERKTGAR 363 Query 371 GLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLI 412 GLRSI+E ++D M+++PS E++ KV+I+E+V+DG+++P +I Sbjct 364 GLRSIIEEVMMDIMFEVPSHEEITKVIINEAVVDGKAEPQMI 405 > sp|P63791|CLPX_STRPN ATP-dependent Clp protease ATP-binding subunit ClpX OS=Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4) OX=170187 GN=clpX PE=3 SV=1 Length=410 Score = 486 bits (1251), Expect = 5e-170, Method: Compositional matrix adjust. Identities = 244/415 (59%), Positives = 321/415 (77%), Gaps = 12/415 (3%) Query 1 MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREE-IKEVAPHR 59 M+ RK+ ++YCSFCGK+Q EV+K+IAG + +IC+ECV+L +IIREE ++EV Sbjct 1 MSTNRKNDM--MVYCSFCGKNQEEVQKIIAGNNAFICNECVELAQEIIREELVEEVLA-- 56 Query 60 ERSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDT---SNGVELGKSNIL 116 + S +P P E+ + L+ YVIGQ++AK+ LAVAVYNHYKR+ DT S V+L KSNIL Sbjct 57 DLSEVPKPIELLHILNHYVIGQDRAKRALAVAVYNHYKRINFHDTREESEDVDLQKSNIL 116 Query 117 LIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKA 176 +IGPTGSGKT LA+TLA+ L+VPF +ADAT LTEAGYVGEDVENI+ KLLQ D+++++A Sbjct 117 MIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQVADFNIERA 176 Query 177 QRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 236 +RGI+Y+DEIDKI++KS+N SITRDVSGEGVQQALLK+IEGTVA+VPPQGGRKHPQQE + Sbjct 177 ERGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMI 236 Query 237 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLI 296 QVDT ILFI GGAF G+++++ R+ IGFG KA + +S + ++ ED+ Sbjct 237 QVDTKNILFIVGGAFDGIEEIVKQRL-GEKVIGFGQNNKAIDENSS---YMQEIIAEDIQ 292 Query 297 KFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALD 356 KFG+IPE IGRLPV A L +L+ + L++ILKEP+NAL KQYQ L + + V+LEF DEAL Sbjct 293 KFGIIPELIGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDVELEFDDEALQ 352 Query 357 AIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLL 411 IA KA+ RKTGARGLRSI+E +LD M+++PS E+V+ V I + +DG KP+L Sbjct 353 EIANKAIERKTGARGLRSIIEETMLDVMFEVPSQENVKLVRITKETVDGTDKPIL 407 > tr|Q5FKR6|Q5FKR6_LACAC ATP-dependent Clp protease ATP-binding subunit ClpX OS=Lactobacillus acidophilus (strain ATCC 700396 / NCK56 / N2 / NCFM) OX=272621 GN=clpX PE=3 SV=1 Length=420 Score = 484 bits (1247), Expect = 3e-169, Method: Compositional matrix adjust. Identities = 233/408 (57%), Positives = 312/408 (76%), Gaps = 4/408 (1%) Query 13 LYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRERSALPTPHEIRN 72 + C+FCGK+Q +V+K+IAG VYIC+ECVDL II +E++ + S LP P EI+ Sbjct 11 IKCAFCGKTQDQVKKMIAGNGVYICNECVDLAKKIIDDELR-ADSLKTASELPKPVEIKK 69 Query 73 HLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETL 132 LD YVIGQ++AKKVL+VAVYNHYKR+ D + EL KSNI +IGPTGSGKT LA+TL Sbjct 70 QLDQYVIGQDRAKKVLSVAVYNHYKRISQMDVDSSTELQKSNIAMIGPTGSGKTYLAQTL 129 Query 133 ARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDEIDKISRK 192 AR+L+VPF +ADATTLTEAGYVGEDVENI+ KLLQ DYD+++AQRGI+YIDEIDKIS+K Sbjct 130 ARILNVPFAIADATTLTEAGYVGEDVENILLKLLQNADYDLERAQRGIIYIDEIDKISKK 189 Query 193 SDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFA 252 S+N SITRDVSGEGVQQ+LLK++EGT+A+VPPQGGRKHPQQE +++DT+ ILFI GGAF Sbjct 190 SENVSITRDVSGEGVQQSLLKILEGTIASVPPQGGRKHPQQEMIKMDTTNILFIVGGAFD 249 Query 253 GLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVA 312 G+++++ R+ + IGFGA + + +K + + DL+KFG+IPEFIGR+P++ Sbjct 250 GIEQIVKSRLGKKT-IGFGA--ENEVNKVDADDWTRHLTTADLVKFGMIPEFIGRIPIIT 306 Query 313 TLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGL 372 TL++L + L+++L EPKNAL KQY+ L +L+GV+L+F D AL AIA A+ R GARGL Sbjct 307 TLDKLDNKDLVRVLTEPKNALVKQYKKLLSLDGVELKFTDGALKAIADLAIQRNMGARGL 366 Query 373 RSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGKPEAQQ 420 R+I+E +++D MY+ PS ED+E V + + VI ++P + E Q Sbjct 367 RTIIENSIMDIMYETPSEEDIESVEVTKDVITRHAQPRITRKNAEEVQ 414 > sp|Q834K4|HSLU_ENTFA ATP-dependent protease ATPase subunit HslU OS=Enterococcus faecalis (strain ATCC 700802 / V583) OX=226185 GN=hslU PE=3 SV=1 Length=467 Score = 103 bits (256), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 52/127 (41%), Positives = 81/127 (64%), Gaps = 1/127 (1%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125 TP EI LD Y++GQ+ AKK +AVA+ N Y+RL+ + ++ N+L+IGPTG GK Sbjct 7 TPKEIVKELDQYIVGQQAAKKSVAVALRNRYRRLQLEENMQQ-DITPKNLLMIGPTGVGK 65 Query 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDE 185 T +A LA++++ PF +AT TE GYVG DVE++++ L++ V+K Q VY Sbjct 66 TEIARRLAKIVNAPFVKVEATKFTEVGYVGRDVESMVRDLVENAIQIVEKQQYSRVYAQA 125 Query 186 IDKISRK 192 + K +++ Sbjct 126 LKKANQR 132 Score = 93.2 bits (230), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 78/219 (36%), Positives = 104/219 (47%), Gaps = 61/219 (28%) Query 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKH-PQQEFLQ 237 GI++IDEIDKI+ KS S +VS EGVQ+ +L ++EG+ Q K+ P Q Sbjct 275 GIIFIDEIDKITSKSQQNS--GEVSREGVQRDILPIVEGS------QVNTKYGPLQ---- 322 Query 238 VDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIK 297 T ILFI GAF L K P DLI Sbjct 323 --TDHILFIASGAF-HLSK-----------------------------------PSDLI- 343 Query 298 FGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDA 357 PE GR P+ L++L+ + + IL EP NAL KQY AL E V + F EA++ Sbjct 344 ----PELQGRFPIRVELDDLTADDFVSILTEPNNALIKQYVALIGTENVSVIFTKEAIER 399 Query 358 IAKKA--MARKT---GARGLRSIVEAALLDTMYDLPSME 391 +A A + R T GAR L +I+E L D +Y+ P M+ Sbjct 400 LAHIAYDVNRDTDNIGARRLHTILERLLEDLLYEAPDMQ 438 > sp|Q5FKD8|HSLU_LACAC ATP-dependent protease ATPase subunit HslU OS=Lactobacillus acidophilus (strain ATCC 700396 / NCK56 / N2 / NCFM) OX=272621 GN=hslU PE=3 SV=1 Length=466 Score = 101 bits (252), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 83/251 (33%), Positives = 121/251 (48%), Gaps = 67/251 (27%) Query 154 VGEDVENIIQKLLQK-CDYD------VQKAQR-GIVYIDEIDKISRKSDNPSITRDVSGE 205 V E E +IQ+ +K DYD ++++Q GI++IDEIDKI + N + +VS E Sbjct 241 VREAREVLIQEESRKLVDYDTIYQRAIERSQNNGIIFIDEIDKII--AGNKRNSGEVSRE 298 Query 206 GVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETG 265 GVQ+ +L ++EG+ ++ V T ILFI GAFA Sbjct 299 GVQRDILPIVEGSTV-----------NTKYGPVSTDHILFIAAGAFA------------- 334 Query 266 SGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQI 325 + +P DLI PE GR P+ LN L+++ ++I Sbjct 335 -----------------------ESKPSDLI-----PELQGRFPIRVELNALTKDDFVKI 366 Query 326 LKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAM-----ARKTGARGLRSIVEAAL 380 LK+P+N+L KQY AL +G+ L F EA+D IA+ A GAR L +I+E L Sbjct 367 LKDPQNSLLKQYIALLKADGIKLIFTQEAVDKIAEIAFDVNQGTDNIGARRLSTILEKLL 426 Query 381 LDTMYDLPSME 391 D +Y+ P ME Sbjct 427 EDVLYEGPDME 437 Score = 97.8 bits (242), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 54/146 (37%), Positives = 88/146 (60%), Gaps = 14/146 (10%) Query 63 ALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTG 122 A+ TP EI L++Y+IGQ++AKK +A+A+YN Y+R++ E+ N+L+ GPTG Sbjct 2 AIKTPKEIVKILNEYIIGQDEAKKSVAIALYNRYRRMQLPKQMQR-EITPKNLLMAGPTG 60 Query 123 SGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY 182 GKT +A LA +++ PF +AT TE GYVG DVE++++ L+ + V Sbjct 61 VGKTEIARRLATIVEAPFVKVEATKFTEVGYVGRDVESMVRDLVGEA-----------VR 109 Query 183 IDEIDKISRKSDNPSITRDVSGEGVQ 208 ++E D+ +R P T++ + E V+ Sbjct 110 MEEKDQFARVK--PQATKEANKELVR 133 > tr|Q2RJP5|Q2RJP5_MOOTA ATP-dependent protease ATPase subunit HslU OS=Moorella thermoacetica (strain ATCC 39073 / JCM 9320) OX=264732 GN=hslU PE=3 SV=1 Length=461 Score = 100 bits (248), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 79/236 (33%), Positives = 112/236 (47%), Gaps = 62/236 (26%) Query 177 QRGIVYIDEIDKIS-RKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEF 235 Q GI+++DEIDKI+ R+S + DVS EGVQ+ +L ++EGT Q ++ Sbjct 267 QEGIIFLDEIDKIAGRESSHGP---DVSREGVQRDILPIVEGTTV-----------QTKY 312 Query 236 LQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDL 295 V T ILFI GAF +P DL Sbjct 313 GPVKTDHILFIAAGAFHV------------------------------------AKPADL 336 Query 296 IKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEAL 355 I PE GR P+ L L E +IL EPKN+L KQY AL ++G++L+F +A+ Sbjct 337 I-----PELQGRFPLRVELKSLGREDFQRILTEPKNSLLKQYTALLAVDGIELQFSADAI 391 Query 356 DAIAKKAMARKT-----GARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQ 406 IA A T GAR L +I+E L D +++ P +++ KVVID + + Q Sbjct 392 AEIADIAYTVNTQGEDIGARRLHTILEKILQDLLFEAPEVQE-RKVVIDRTYVRKQ 446 Score = 97.8 bits (242), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 50/105 (48%), Positives = 72/105 (69%), Gaps = 3/105 (3%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLR-NGDTSNGVELGKSNILLIGPTGSG 124 TP +I LD Y+IGQE+AKK +AVA+ N Y+R + N + + E+ NI++IGPTG G Sbjct 4 TPRQIVAELDRYIIGQEEAKKCVAVALRNRYRRQKLNPELRD--EVLPKNIIMIGPTGVG 61 Query 125 KTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKC 169 KT +A LA+L+ PF +AT TE GYVG DVE++I++L++ Sbjct 62 KTEIARRLAKLVGAPFLKVEATRFTEVGYVGRDVESMIRELVENA 106 > sp|Q81WK6|HSLU_BACAN ATP-dependent protease ATPase subunit HslU OS=Bacillus anthracis OX=1392 GN=hslU PE=3 SV=1 Length=463 Score = 98.2 bits (243), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 76/227 (33%), Positives = 106/227 (47%), Gaps = 61/227 (27%) Query 177 QRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 236 Q GI++IDEIDKI+ K N + DVS EGVQ+ +L ++EG+ A ++ Sbjct 270 QLGIIFIDEIDKIAGKQSN---SVDVSREGVQRDILPIVEGSNVAT-----------KYG 315 Query 237 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLI 296 V T ILF+ GAF +P DLI Sbjct 316 SVKTDYILFVAAGAFH------------------------------------MSKPSDLI 339 Query 297 KFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALD 356 PE GR P+ L +LS + ++IL EP NAL KQY AL EG+++EF DEA+ Sbjct 340 -----PELQGRFPIRVELTKLSTDDFVKILIEPDNALIKQYMALLATEGIEIEFSDEAIR 394 Query 357 AIAKKAM-----ARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVI 398 IA+ A GAR L +I+E L D ++ + +EK+ I Sbjct 395 KIAEIAYQVNQDTDNIGARRLHTIMEKLLEDLSFEASEI-TLEKITI 440 Score = 97.8 bits (242), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 47/102 (46%), Positives = 68/102 (67%), Gaps = 1/102 (1%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125 TP +I LD Y+IGQ+ AKK +AVA+ N Y+R + + E+ NIL+IGPTG GK Sbjct 6 TPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRD-EIAPKNILMIGPTGVGK 64 Query 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQ 167 T +A +A+L+ PF +AT TE GYVG DVE++++ L++ Sbjct 65 TEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVE 106 > sp|Q5HPT8|HSLU_STAEQ ATP-dependent protease ATPase subunit HslU OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) OX=176279 GN=hslU PE=3 SV=1 Length=467 Score = 93.6 bits (231), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 70/219 (32%), Positives = 104/219 (47%), Gaps = 59/219 (27%) Query 177 QRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 236 Q GI++IDEIDK++ ++N + +DVS +GVQ+ +L ++EG++ Q ++ Sbjct 273 QMGIIFIDEIDKVA--TNNQNSGQDVSRQGVQRDILPILEGSMI-----------QTKYG 319 Query 237 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLI 296 V+T +LFI GAF V SD Sbjct 320 TVNTEHMLFIGAGAFH---------------------VSKPSD----------------- 341 Query 297 KFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALD 356 LIPE GR P+ L LS E ++IL EPK +L KQY+AL E V + F ++A+ Sbjct 342 ---LIPELQGRFPIRVELESLSVEDFVRILTEPKLSLVKQYEALLQTEEVTVNFSEDAIQ 398 Query 357 AIAKKAM-----ARKTGARGLRSIVEAALLDTMYDLPSM 390 +A+ A GAR L +I+E L D ++ PSM Sbjct 399 RLAEIAYQVNQDTDNIGARRLHTILEKMLEDLSFEAPSM 437 Score = 90.1 bits (222), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 43/103 (42%), Positives = 69/103 (67%), Gaps = 5/103 (5%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKR--LRNGDTSNGVELGKSNILLIGPTGS 123 TP +I + L++Y++GQ AK+ +A+A+ N Y+R L+ + E+ NIL+IGPTG Sbjct 9 TPKDIVSKLNEYIVGQNDAKRKVAIALRNRYRRSLLKEEEKQ---EIAPKNILMIGPTGV 65 Query 124 GKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLL 166 GKT +A +A+++ PF +AT TE GYVG DVE++++ L+ Sbjct 66 GKTEIARRMAKIVGAPFIKVEATKFTEVGYVGRDVESMVRDLV 108 > tr|A5I766|A5I766_CLOBH ATP-dependent zinc metalloprotease FtsH OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) OX=441771 GN=ftsH PE=3 SV=1 Length=658 Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 45/137 (33%), Positives = 70/137 (51%), Gaps = 9/137 (7%) Query 78 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 137 V GQ++AK+ L V +K R T G +L K LL+GP G+GKTLLA+ +A Sbjct 167 VAGQDEAKESLVEIVDFLHKPERY--TEIGAKLPKG-ALLVGPPGTGKTLLAKAVAGEAK 223 Query 138 VPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPS 197 VPF ++ E +VG ++ L ++ Q+ I++IDEID I + DN Sbjct 224 VPFFSLSGSSFVEM-FVGMGAAR-VRDLFEQA----QEKAPCIIFIDEIDAIGKSRDNAM 277 Query 198 ITRDVSGEGVQQALLKL 214 + D + + Q L ++ Sbjct 278 SSNDEREQTLNQLLAEM 294 > tr|Q2RLR4|Q2RLR4_MOOTA AAA domain-containing protein OS=Moorella thermoacetica (strain ATCC 39073 / JCM 9320) OX=264732 GN=Moth_0291 PE=4 SV=1 Length=370 Score = 50.1 bits (118), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 27/85 (32%), Positives = 50/85 (59%), Gaps = 7/85 (8%) Query 113 SNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYD 172 ++ILL GP G GKT L++ +A L +P + D + + + Y+G+ +N+ K D Sbjct 122 TSILLYGPPGVGKTYLSKYIAHKLSMPLIVMDLAS-SVSSYLGKTGQNL------KKIVD 174 Query 173 VQKAQRGIVYIDEIDKISRKSDNPS 197 K + I+++DE D ++++ D+PS Sbjct 175 YAKNRPSILFLDEFDAVAKRRDDPS 199 > tr|A0A0H2USJ7|A0A0H2USJ7_STRPN ATP-dependent Clp protease, ATP-binding subunit OS=Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4) OX=170187 GN=SP_2194 PE=3 SV=1 Length=810 Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 87/332 (26%), Positives = 145/332 (44%), Gaps = 75/332 (23%) Query 74 LDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLA 133 L VIGQ+QA ++ A+ +R ++G S+ +G + + +GPTG GKT LA+ LA Sbjct 510 LHKRVIGQDQAVSSISRAI----RRNQSGIRSHKRPIG--SFMFLGPTGVGKTELAKALA 563 Query 134 RLLD------VPFTMAD------ATTLTEA--GYVG-EDVENIIQKLLQKCDYDVQKAQR 178 +L + F M++ A+ L A GYVG E+ + +K V+ Sbjct 564 EVLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVGYEEGGELTEK--------VRNKPY 615 Query 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238 ++ DE++K +P I LL++++ V + GRK V Sbjct 616 SVLLFDEVEKA-----HPDIF---------NVLLQVLDDGV--LTDSKGRK--------V 651 Query 239 DTSKILFICG---GAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDL 295 D S + I GA A D +GFGA D + E + + E+L Sbjct 652 DFSNTIIIMTSNLGATALRDD---------KTVGFGA-----KDIRFDQENMEKRMFEEL 697 Query 296 IKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEAL 355 K PEFI R+ + LS + + +++K + K A +G+DL+ + AL Sbjct 698 KK-AYRPEFINRIDEKVVFHSLSSDHMQEVVK----IMVKPLVASLTEKGIDLKLQASAL 752 Query 356 DAIAKKAMARKTGARGLRSIVEAALLDTMYDL 387 +A + + GAR LR ++ + D + +L Sbjct 753 KLLANQGYDPEMGARPLRRTLQTEVEDKLAEL 784 > tr|Q5FHW6|Q5FHW6_LACAC UVR domain-containing protein OS=Lactobacillus acidophilus (strain ATCC 700396 / NCK56 / N2 / NCFM) OX=272621 GN=clpE PE=3 SV=1 Length=709 Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 44/79 (56%), Gaps = 4/79 (5%) Query 302 PEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKK 361 PEF+ RL + N L+E+ + +I+ N K+ + +GV +E DEA + +A+K Sbjct 578 PEFLNRLDAIVPFNSLTEQDMGKII----NIYLKKMSHVLAKKGVTVEVSDEAKEFLAEK 633 Query 362 AMARKTGARGLRSIVEAAL 380 +K GAR LR +VE L Sbjct 634 GYDKKFGARPLRRVVEQNL 652 > tr|Q2RLP6|Q2RLP6_MOOTA AAA domain-containing protein OS=Moorella thermoacetica (strain ATCC 39073 / JCM 9320) OX=264732 GN=Moth_0309 PE=3 SV=1 Length=415 Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 28/86 (33%), Positives = 41/86 (48%), Gaps = 6/86 (7%) Query 115 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 174 ILL GP G+GKT A AR F +A++L YVG N L+ + Sbjct 209 ILLYGPPGTGKTSFARAAARYFGCSFYAVNASSLI-GRYVGTSEAN-----LRNLFAHAR 262 Query 175 KAQRGIVYIDEIDKISRKSDNPSITR 200 + + +++ DEID I R+ D + R Sbjct 263 RHRPAVIFFDEIDAIGRRRDGSDMNR 288 > tr|A5I7Q0|A5I7Q0_CLOBH ATP-dependent zinc metalloprotease FtsH OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) OX=441771 GN=ftsH PE=3 SV=1 Length=601 Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/134 (30%), Positives = 66/134 (49%), Gaps = 10/134 (7%) Query 59 RERSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLI 118 + ++ + TP + + DD V G ++ K+ LA V R D + G +LL+ Sbjct 143 KSKAKMATPDKKKVTFDD-VAGADEEKEELAEIVDFLKSPKRYIDMGARIPKG---VLLV 198 Query 119 GPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 GP G+GKTLLA+ +A VPF + E +VG ++ L ++ +K Sbjct 199 GPPGTGKTLLAKAIAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA----KKNSP 252 Query 179 GIVYIDEIDKISRK 192 I++IDEID + R+ Sbjct 253 CIIFIDEIDAVGRQ 266 > sp|O69076|FTSH_STRPN ATP-dependent zinc metalloprotease FtsH OS=Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4) OX=170187 GN=ftsH PE=3 SV=3 Length=652 Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 6/80 (8%) Query 113 SNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYD 172 + +LL GP G+GKTLLA+ +A VPF + E +VG ++ L + D Sbjct 221 AGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRSLFE----D 274 Query 173 VQKAQRGIVYIDEIDKISRK 192 +KA I++IDEID + R+ Sbjct 275 AKKAAPAIIFIDEIDAVGRQ 294 > tr|A0A347ZXP1|A0A347ZXP1_BACAN ATP-dependent zinc metalloprotease FtsH OS=Bacillus anthracis OX=1392 GN=ftsH PE=3 SV=1 Length=633 Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/78 (35%), Positives = 42/78 (54%), Gaps = 6/78 (8%) Query 115 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 174 +LL+GP G+GKTLLA +A VPF + E +VG ++ L + + + Sbjct 198 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFE----NAK 251 Query 175 KAQRGIVYIDEIDKISRK 192 K I++IDEID + R+ Sbjct 252 KNAPCIIFIDEIDAVGRQ 269 > tr|Q2RM95|Q2RM95_MOOTA ATP-dependent zinc metalloprotease FtsH OS=Moorella thermoacetica (strain ATCC 39073 / JCM 9320) OX=264732 GN=ftsH PE=3 SV=1 Length=645 Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/78 (36%), Positives = 41/78 (53%), Gaps = 6/78 (8%) Query 115 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 174 +LL GP G+GKTLLA +A VPF + E +VG ++ L ++ + Sbjct 193 VLLFGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA----K 246 Query 175 KAQRGIVYIDEIDKISRK 192 K IV+IDEID + R+ Sbjct 247 KNSPCIVFIDEIDAVGRQ 264 > tr|A0A1Q4LW06|A0A1Q4LW06_BACAN AAA domain-containing protein OS=Bacillus anthracis OX=1392 GN=GBAA_0624 PE=4 SV=1 Length=297 Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/38 (61%), Positives = 26/38 (68%), Gaps = 1/38 (3%) Query 103 DTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPF 140 D + LGK NILL GPTGSGKT+LAETL+ L P Sbjct 48 DAITALLLGK-NILLKGPTGSGKTVLAETLSSLFQKPM 84 > sp|P46469|FTSH_LACLA ATP-dependent zinc metalloprotease FtsH OS=Lactococcus lactis subsp. lactis (strain IL1403) (Streptococcus lactis) OX=272623 GN=ftsH PE=3 SV=1 Length=695 Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/80 (34%), Positives = 42/80 (53%), Gaps = 6/80 (8%) Query 113 SNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYD 172 + +LL GP G+GKTLLA+ +A VPF + E +VG ++ L + Sbjct 227 AGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFENA--- 281 Query 173 VQKAQRGIVYIDEIDKISRK 192 +K I++IDEID + R+ Sbjct 282 -KKTAPSIIFIDEIDAVGRQ 300 > tr|Q5FMA3|Q5FMA3_LACAC ATP-dependent zinc metalloprotease FtsH OS=Lactobacillus acidophilus (strain ATCC 700396 / NCK56 / N2 / NCFM) OX=272621 GN=ftsH PE=3 SV=1 Length=718 Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 9/90 (10%) Query 103 DTSNGVELGK---SNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVE 159 D S +LG S +LL GP G+GKTLLA +A +VPF + E +VG Sbjct 214 DPSKYTKLGARIPSGVLLEGPPGTGKTLLARAVAGEANVPFYSISGSDFVEM-FVG---- 268 Query 160 NIIQKLLQKCDYDVQKAQRGIVYIDEIDKI 189 + ++ + +K I++IDEID I Sbjct 269 -VGASRVRDLFSNAKKNAPSIIFIDEIDAI 297 > sp|Q5HPD3|Y979_STAEQ Uncharacterized protein SERP0979 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) OX=176279 GN=SERP0979 PE=3 SV=1 Length=263 Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 18/27 (67%), Positives = 23/27 (85%), Gaps = 0/27 (0%) Query 114 NILLIGPTGSGKTLLAETLARLLDVPF 140 NILL GPTGSGKT LAETL+ ++++P Sbjct 26 NILLKGPTGSGKTKLAETLSHVMNLPM 52 > tr|A5I501|A5I501_CLOBH AAA domain-containing protein OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) OX=441771 GN=CBO2570 PE=4 SV=1 Length=416 Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 32/104 (31%), Positives = 48/104 (46%), Gaps = 26/104 (25%) Query 114 NILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 173 N + GP G+GKT LA +A +D F +ATT + +D++ I + +Y Sbjct 40 NSIFYGPPGTGKTTLANIMANYVDKKFYRLNATTAS-----IKDIQEITSSINSLLNYS- 93 Query 174 QKAQRGIV-YIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIE 216 G+V YIDE+ ++K QQALL+ IE Sbjct 94 -----GVVLYIDELQHFTKKQ--------------QQALLEFIE 118 > tr|Q839B1|Q839B1_ENTFA ATP-dependent zinc metalloprotease FtsH OS=Enterococcus faecalis (strain ATCC 700802 / V583) OX=226185 GN=ftsH PE=3 SV=1 Length=718 Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 27/80 (34%), Positives = 42/80 (53%), Gaps = 6/80 (8%) Query 113 SNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYD 172 + +LL GP G+GKTLLA+ +A VPF + E +VG ++ L + Sbjct 221 AGVLLEGPPGTGKTLLAKAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFETA--- 275 Query 173 VQKAQRGIVYIDEIDKISRK 192 +K I++IDEID + R+ Sbjct 276 -KKNAPAIIFIDEIDAVGRQ 294 > tr|A5HYU4|A5HYU4_CLOBH ATP-dependent zinc metalloprotease FtsH OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) OX=441771 GN=ftsH PE=3 SV=1 Length=576 Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 38/117 (32%), Positives = 60/117 (51%), Gaps = 13/117 (11%) Query 78 VIGQEQAKKVLAVAVYNHYKRLRNGD--TSNGVELGKSNILLIGPTGSGKTLLAETLARL 135 V G E+AK+ +V + L+N + +S G + K I+L G G+GKTL+A+ +A Sbjct 153 VAGNEEAKE----SVKDIVDFLKNPEKYSSYGARMPKG-IILYGDPGTGKTLMAKAVAGE 207 Query 136 LDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDEIDKISRK 192 VPF + + YVG I Q L +K + + +++IDEID I +K Sbjct 208 AGVPFYAMSGSDFVQV-YVGVGASRIRQ-LFKKA----RSKGKAVIFIDEIDAIGKK 258 > tr|Q5HRP3|Q5HRP3_STAEQ ATP-dependent zinc metalloprotease FtsH OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) OX=176279 GN=ftsH PE=3 SV=1 Length=700 Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 41/78 (53%), Gaps = 6/78 (8%) Query 115 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 174 +LL+GP G+GKTLLA +A PF + E +VG ++ L + + + Sbjct 201 VLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEM-FVGVGASR-VRDLFE----NAK 254 Query 175 KAQRGIVYIDEIDKISRK 192 K I++IDEID + R+ Sbjct 255 KNAPCIIFIDEIDAVGRQ 272 > sp|Q9CI09|CLPE_LACLA ATP-dependent Clp protease ATP-binding subunit ClpE OS=Lactococcus lactis subsp. lactis (strain IL1403) (Streptococcus lactis) OX=272623 GN=clpE PE=3 SV=1 Length=748 Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 82/353 (23%), Positives = 144/353 (41%), Gaps = 88/353 (25%) Query 74 LDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSN-----ILLIGPTGSGKTLL 128 L +VIGQ++A +A A+ +R R G LGK N L +GPTG GKT L Sbjct 442 LKAHVIGQDEAVDKIAKAI----RRSRVG-------LGKPNRPIGSFLFVGPTGVGKTEL 490 Query 129 AETLARLL------DVPFTMAD------ATTLTEA--GYVGEDVENIIQKLLQKCDYDVQ 174 A+ LA+ L + F M++ L A GYVG + + + +++ Y Sbjct 491 AKQLAKELFGSSESMIRFDMSEYMEKHSVAKLIGAPPGYVGYEEAGQLTERVRRNPY--- 547 Query 175 KAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQE 234 ++ +DEI+K + V L+++E + GR ++ Sbjct 548 ----SLILLDEIEK--------------AHPDVMHMFLQILED--GRLTDAQGRTVSFKD 587 Query 235 FLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPED 294 L + TS AG KV + +GFGA + ++ K+ G+L D Sbjct 588 SLIIMTSN---------AGTGKV-------EASVGFGAAREGRT-KSVLGQL------GD 624 Query 295 LIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEA 354 PEF+ R + + LS+E L++I+ + + + + L A Sbjct 625 FFS----PEFMNRFDGIIEFSALSKENLLKIV----DLMLDEVNEQIGRNDIHLSVTQAA 676 Query 355 LDAIAKKAMARKTGARGLRSIVEAALLDTMYDL----PSMEDVEKVVIDESVI 403 + + GAR LR ++ + D++ D P +++ +ID+ ++ Sbjct 677 KEKLVDLGYNPAMGARPLRRTIQENIEDSIADFYIEHPEYKELVADLIDDKIV 729 > tr|Q2RJJ8|Q2RJJ8_MOOTA AAA domain-containing protein OS=Moorella thermoacetica (strain ATCC 39073 / JCM 9320) OX=264732 GN=Moth_1077 PE=3 SV=1 Length=494 Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/80 (33%), Positives = 40/80 (50%), Gaps = 4/80 (5%) Query 115 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTE--AGYVGEDVENIIQKLLQKCDYD 172 ILL GP G+GKTL+A A D F A + E AG + V + + + Sbjct 101 ILLSGPPGTGKTLMARAAATYTDAVFLAASGSEFIEMYAGVGAQRVRELFNRARELARR- 159 Query 173 VQKAQRGIVYIDEIDKISRK 192 Q+ +R I++IDE++ + K Sbjct 160 -QQKKRAIIFIDELEVLGGK 178 Lambda K H a alpha 0.316 0.135 0.378 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 1465450827 Database: all.fasta Posted date: May 25, 2020 1:43 PM Number of letters in database: 6,760,419 Number of sequences in database: 23,494 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40