Database and Motifs | High-scoring Motif Occurences | Debugging Information |
FIMO version 4.3.0, (Release date: 6 PDT 20)
For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net
DATABASE
genus_sars.fasta
Database contains
1
sequences,
29796
residues
MOTIFS meme.txt (nucleotide)
MOTIF | WIDTH | BEST POSSIBLE MATCH |
---|---|---|
1 | 10 | CTAAACGAAC |
2 | 11 | GTTTAATCGGA |
3 | 13 | GTCCCTATCGCTC |
4 | 6 | AAAGGA |
5 | 13 | GCTTTTGGGACTC |
Random model letter frequencies
(from non-redundant database):
A 0.282 C 0.222 G 0.229 T 0.267
Motif | Sequence Name | Start | End | p-value | q-value |
---|---|---|---|---|---|
1 | MT509959.1 | 24 | 33 | 1.19e-06 | 0.00708 |
1 | MT509959.1 | 21510 | 21519 | 1.19e-06 | 0.00708 |
1 | MT509959.1 | 26423 | 26432 | 1.19e-06 | 0.00708 |
1 | MT509959.1 | 27838 | 27847 | 1.19e-06 | 0.00708 |
1 | MT509959.1 | 28210 | 28219 | 1.19e-06 | 0.00708 |
1 | MT509959.1 | 25339 | 25348 | 9.37e-06 | 0.0465 |
1 | MT509959.1 | 24733 | 24742 | 8.11e-05 | 0.345 |
1 | MT509959.1 | 29340 | 29349 | 9.71e-05 | 0.361 |
Command line:
fimo --o result_gen --motif 1 --norc meme.txt genus_sars.fasta
Settings:
output directory = result_gen | MEME file name = meme.txt | sequence file name = genus_sars.fasta |
background file name = (null) | motif name = motif | allow clobber = false |
compute q-values = true | output p-threshold set = false | output q-threshold set = false |
text only = false | scan both strands = false | max sequence length = 250000000 |
output q-value threshold = 1 | output p-value threshold = 0.0001 | pseudocount = 0.1 |
verbosity = 2 | selected motif = 1 | = |
This information can be useful in the event you wish to report a problem with the FIMO software.