RID: AN5ABXUK013 Job Title:POLN_WEEV P13896 Polyprotein P1234 (P1234) Program: BLASTP Database: swissprot Non-redundant UniProtKB/SwissProt sequences Query #1: POLN_WEEV P13896 Polyprotein P1234 (P1234) (Non-structural polyprotein) (Polyprotein P123') (P123') (Polyprotein P123) (P123) (mRNA-capping enzyme nsP1) (2.1.1.- {ECO:0000250|UniProtKB:P36328}) (2.7.7.- {ECO:0000250|UniProtKB:P36328}) (Non-structural protein 1) (Protease nsP2) (3.1.3.33 {ECO:0000250|UniProtKB:P08411}) (3.4.22.- {ECO:0000250|UniProtKB:P27282}) (3.6.1.15 {ECO:0000250|UniProtKB:Q8JUX6}) (3.6.4.13 {ECO:0000250|UniProtKB:Q8JUX6}) (Non-structural protein 2) (nsP2) (Non-structural protein 3') (nsP3') (3.1.3.84 {ECO:0000250|UniProtKB:P27282}) (Non-structural protein 3) (nsP3) (3.1.3.84 {ECO:0000250|UniProtKB:P27282}) (RNA-directed RNA polymerase nsP4) (2.7.7.19 {ECO:0000250|UniProtKB:P03317}) (2.7.7.48 {ECO:0000255|PROSITE-ProRule:PRU00539}) (Non-structural protein 4) (nsP4) Query ID: lcl|Query_74426 Length: 794 Sequences producing significant alignments: Scientific Common Max Total Query E Per. Acc. Description Name Name Taxid Score Score cover Value Ident Len Accession RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Western equi... NA 11039 1672 1672 100% 0.0 100.00 2467 P13896.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Eastern equi... NA 374598 1437 1437 100% 0.0 84.13 2494 Q4QXJ8.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Eastern equi... NA 374597 1431 1431 100% 0.0 83.63 2474 Q306W8.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Eastern equi... NA 374596 1428 1428 100% 0.0 83.75 2471 Q306W6.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 11038 1241 1241 99% 0.0 73.14 2493 P27282.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 36385 1241 1241 99% 0.0 73.01 2493 P36328.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 36382 1238 1238 99% 0.0 72.89 2485 P36327.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 376610 1237 1237 99% 0.0 73.27 2497 Q8V294.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 36384 1225 1225 99% 0.0 72.64 2499 Q9WJC7.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Sagiyama virus NA 59303 947 947 99% 0.0 57.21 2467 Q9JGL0.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Ross river v... NA 11031 946 946 99% 0.0 56.84 2480 P13887.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Semliki Fore... NA 11033 946 946 99% 0.0 57.20 2432 P08411.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Mayaro virus... NA 374990 944 944 99% 0.0 57.82 2437 Q8QZ73.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Getah virus NA 59300 943 943 99% 0.0 57.09 2467 Q5Y389.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Igbo Ora virus NA 79899 933 933 98% 0.0 55.75 2513 O90370.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Chikungunya ... NA 371094 932 932 96% 0.0 56.87 2474 Q8JUX6.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... O'nyong-nyon... NA 374989 931 931 98% 0.0 55.63 2513 O90368.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... O'nyong-nyon... NA 11028 931 931 98% 0.0 55.75 2514 P13886.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Chikungunya ... NA 371095 929 929 96% 0.0 56.61 2474 Q5XXP4.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Barmah Fores... NA 11020 919 919 96% 0.0 57.90 2411 P87515.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Ockelbo virus NA 31699 879 879 98% 0.0 55.18 2515 P27283.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Sindbis virus NA 11034 873 873 98% 0.0 54.81 2513 P03317.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Aura virus NA 44158 817 817 98% 0.0 53.13 2499 Q86924.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Salmon pancr... NA 84589 619 619 98% 0.0 41.77 2601 Q8JJX1.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Sleeping dis... NA 78540 610 610 98% 0.0 41.84 2593 Q8QL53.1 RecName: Full=Replication protein 1a; Includes: RecName:... Pelargonium ... NA 650488 63.5 63.5 14% 5e-09 37.29 962 Q9DUT3.1 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Tobacco mild... NA 12241 62.4 62.4 33% 1e-08 26.79 1609 P18339.2 RecName: Full=Replicase polyprotein 1ab; Contains: RecName:... Beet yellows... NA 478555 58.9 58.9 30% 2e-07 24.63 3094 Q08534.2 RecName: Full=RNA replication protein; Includes: RecName:... Citrus lepro... NA 686950 45.8 45.8 14% 0.002 29.60 2512 Q1KZ59.1 RecName: Full=Replicase polyprotein 1ab; Contains: RecName:... Lettuce infe... NA 651355 42.4 42.4 12% 0.017 30.91 2379 Q83045.2 RecName: Full=Replicase polyprotein 1a; Contains: RecName:... Lettuce infe... NA 651355 42.4 42.4 12% 0.018 30.91 1873 Q83044.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... White bream ... NA 766180 37.0 37.0 16% 0.93 23.53 6872 Q008X6.1 RecName: Full=Movement protein TGB1; AltName: Full=P42; AltNam... Beet necroti... NA 652670 34.7 34.7 17% 3.0 26.43 384 Q65674.1 Alignments: >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Western equine encephalitis virus] Sequence ID: P13896.3 Length: 2467 Range 1: 534 to 1327 Score:1672 bits(4329), Expect:0.0, Method:Compositional matrix adjust., Identities:794/794(100%), Positives:794/794(100%), Gaps:0/794(0%) Query 1 GSVETPRGHIRVTSYPGEEKIGSYAILSPQAVLNSEKLACIHPLAEQVLVMTHKGRAGRY 60 GSVETPRGHIRVTSYPGEEKIGSYAILSPQAVLNSEKLACIHPLAEQVLVMTHKGRAGRY Sbjct 534 GSVETPRGHIRVTSYPGEEKIGSYAILSPQAVLNSEKLACIHPLAEQVLVMTHKGRAGRY 593 Query 61 KVEPYHGKVIVPEGTAVPVQDFQALSESATIVFNEREFVNRYLHHIAINGGALNTDEEYY 120 KVEPYHGKVIVPEGTAVPVQDFQALSESATIVFNEREFVNRYLHHIAINGGALNTDEEYY Sbjct 594 KVEPYHGKVIVPEGTAVPVQDFQALSESATIVFNEREFVNRYLHHIAINGGALNTDEEYY 653 Query 121 KTVKTQDTDSEYVFDIDARKCVKREDAGPLCLTGDLVDPPFHEFAYESLKTRPAAPHKVP 180 KTVKTQDTDSEYVFDIDARKCVKREDAGPLCLTGDLVDPPFHEFAYESLKTRPAAPHKVP Sbjct 654 KTVKTQDTDSEYVFDIDARKCVKREDAGPLCLTGDLVDPPFHEFAYESLKTRPAAPHKVP 713 Query 181 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVRRMRRMDVAARTVDSVLLN 240 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVRRMRRMDVAARTVDSVLLN Sbjct 714 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVRRMRRMDVAARTVDSVLLN 773 Query 241 GVKHPVNTLYIDEAFACHAGTLLALIAIVKPKKVVLCGDPKQCGFFNMMCLKVHFNHDIC 300 GVKHPVNTLYIDEAFACHAGTLLALIAIVKPKKVVLCGDPKQCGFFNMMCLKVHFNHDIC Sbjct 774 GVKHPVNTLYIDEAFACHAGTLLALIAIVKPKKVVLCGDPKQCGFFNMMCLKVHFNHDIC 833 Query 301 TEVYHKSISRRCTQTVTAIVSTLFYDKRMKTVNPCADKIIIDTTGTTKPHKDDLILTCFR 360 TEVYHKSISRRCTQTVTAIVSTLFYDKRMKTVNPCADKIIIDTTGTTKPHKDDLILTCFR Sbjct 834 TEVYHKSISRRCTQTVTAIVSTLFYDKRMKTVNPCADKIIIDTTGTTKPHKDDLILTCFR 893 Query 361 GWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRYKVNENPLYSQTSEHVNVLLTRTEKRI 420 GWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRYKVNENPLYSQTSEHVNVLLTRTEKRI Sbjct 894 GWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRYKVNENPLYSQTSEHVNVLLTRTEKRI 953 Query 421 VWKTLAGDPWIKTLTAKYPGDFTASLDDWQREHDAIMARVLDKPQTADVFQNKVNVCWAK 480 VWKTLAGDPWIKTLTAKYPGDFTASLDDWQREHDAIMARVLDKPQTADVFQNKVNVCWAK Sbjct 954 VWKTLAGDPWIKTLTAKYPGDFTASLDDWQREHDAIMARVLDKPQTADVFQNKVNVCWAK 1013 Query 481 ALEPVLATANIVLTRQQWETLHPFKHDRAYSPEMALNFFCTRFFGVDLDSGLFSAPTVAL 540 ALEPVLATANIVLTRQQWETLHPFKHDRAYSPEMALNFFCTRFFGVDLDSGLFSAPTVAL Sbjct 1014 ALEPVLATANIVLTRQQWETLHPFKHDRAYSPEMALNFFCTRFFGVDLDSGLFSAPTVAL 1073 Query 541 TYRDQHWDNSPGKNMYGLNREVAKELSRRYPCITKAVDTGRVADIRNNTIKDYSPTINVV 600 TYRDQHWDNSPGKNMYGLNREVAKELSRRYPCITKAVDTGRVADIRNNTIKDYSPTINVV Sbjct 1074 TYRDQHWDNSPGKNMYGLNREVAKELSRRYPCITKAVDTGRVADIRNNTIKDYSPTINVV 1133 Query 601 PLNRRLPHSLIVDHKGQGTTDHSGFLSKMKGKSVLVIGDPISIPGKKVESMGPLPTNTIR 660 PLNRRLPHSLIVDHKGQGTTDHSGFLSKMKGKSVLVIGDPISIPGKKVESMGPLPTNTIR Sbjct 1134 PLNRRLPHSLIVDHKGQGTTDHSGFLSKMKGKSVLVIGDPISIPGKKVESMGPLPTNTIR 1193 Query 661 CDLDLGIPSHVGKYDIIFVNVRTPYRNHHYQQCEDHAIHHSMLTCKAVHHLNTGGTCVAI 720 CDLDLGIPSHVGKYDIIFVNVRTPYRNHHYQQCEDHAIHHSMLTCKAVHHLNTGGTCVAI Sbjct 1194 CDLDLGIPSHVGKYDIIFVNVRTPYRNHHYQQCEDHAIHHSMLTCKAVHHLNTGGTCVAI 1253 Query 721 GYGLADRATENIITAVARSFRFTRVCQPKNTAENTEVLFVFFGKDNGNHTHDQDRLGVVL 780 GYGLADRATENIITAVARSFRFTRVCQPKNTAENTEVLFVFFGKDNGNHTHDQDRLGVVL Sbjct 1254 GYGLADRATENIITAVARSFRFTRVCQPKNTAENTEVLFVFFGKDNGNHTHDQDRLGVVL 1313 Query 781 DNIYQGSTRYEAGR 794 DNIYQGSTRYEAGR Sbjct 1314 DNIYQGSTRYEAGR 1327 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Eastern equine encephalitis virus (strain Florida 91-469)] Sequence ID: Q4QXJ8.3 Length: 2494 Range 1: 534 to 1327 Score:1437 bits(3721), Expect:0.0, Method:Compositional matrix adjust., Identities:668/794(84%), Positives:735/794(92%), Gaps:0/794(0%) Query 1 GSVETPRGHIRVTSYPGEEKIGSYAILSPQAVLNSEKLACIHPLAEQVLVMTHKGRAGRY 60 GSVETPR HI+VT+YPGEE IGSYA+LSPQAVLNSEKLACIHPLAEQVLVMTHKGRAGRY Sbjct 534 GSVETPRRHIKVTTYPGEEMIGSYAVLSPQAVLNSEKLACIHPLAEQVLVMTHKGRAGRY 593 Query 61 KVEPYHGKVIVPEGTAVPVQDFQALSESATIVFNEREFVNRYLHHIAINGGALNTDEEYY 120 KVEPYHG+VIVP GTA+P+ DFQALSESATIVFNEREFVNRYLHHIA+NGGALNTDEEYY Sbjct 594 KVEPYHGRVIVPSGTAIPILDFQALSESATIVFNEREFVNRYLHHIAVNGGALNTDEEYY 653 Query 121 KTVKTQDTDSEYVFDIDARKCVKREDAGPLCLTGDLVDPPFHEFAYESLKTRPAAPHKVP 180 K VK+ +TDSEYVFDIDA+KCVK+ DAGP+CL G+LVDPPFHEFAYESLKTRPAAPHKVP Sbjct 654 KVVKSTETDSEYVFDIDAKKCVKKGDAGPMCLVGELVDPPFHEFAYESLKTRPAAPHKVP 713 Query 181 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVRRMRRMDVAARTVDSVLLN 240 TIGVYGVPGSGKSGIIKSAVTK+DLVVSAKKENC EII+DV+RMR MD+AARTVDSVLLN Sbjct 714 TIGVYGVPGSGKSGIIKSAVTKRDLVVSAKKENCMEIIKDVKRMRGMDIAARTVDSVLLN 773 Query 241 GVKHPVNTLYIDEAFACHAGTLLALIAIVKPKKVVLCGDPKQCGFFNMMCLKVHFNHDIC 300 GVKH V+TLYIDEAFACHAGTLLALIAIVKPKKVVLCGDPKQCGFFNMMCLKVHFNH+IC Sbjct 774 GVKHSVDTLYIDEAFACHAGTLLALIAIVKPKKVVLCGDPKQCGFFNMMCLKVHFNHEIC 833 Query 301 TEVYHKSISRRCTQTVTAIVSTLFYDKRMKTVNPCADKIIIDTTGTTKPHKDDLILTCFR 360 TEVYHKSISRRCT+TVT+IVSTLFYDKRM+TVNPC DKIIIDTT TTKP KDD+ILTCFR Sbjct 834 TEVYHKSISRRCTKTVTSIVSTLFYDKRMRTVNPCNDKIIIDTTSTTKPLKDDIILTCFR 893 Query 361 GWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRYKVNENPLYSQTSEHVNVLLTRTEKRI 420 GWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRYKVNENPLY+QTSEHVNVLLTRTEKRI Sbjct 894 GWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRYKVNENPLYAQTSEHVNVLLTRTEKRI 953 Query 421 VWKTLAGDPWIKTLTAKYPGDFTASLDDWQREHDAIMARVLDKPQTADVFQNKVNVCWAK 480 VWKTLAGDPWIKTLTA YPG+FTA+L++WQ EHDAIMA++L+ P ++DVFQNKVNVCWAK Sbjct 954 VWKTLAGDPWIKTLTASYPGNFTATLEEWQAEHDAIMAKILETPASSDVFQNKVNVCWAK 1013 Query 481 ALEPVLATANIVLTRQQWETLHPFKHDRAYSPEMALNFFCTRFFGVDLDSGLFSAPTVAL 540 ALEPVLATANI LTR QWET+ FK D+AYSPEMALNFFCTRFFGVD+DSGLFSAPTV L Sbjct 1014 ALEPVLATANITLTRSQWETIPAFKDDKAYSPEMALNFFCTRFFGVDIDSGLFSAPTVPL 1073 Query 541 TYRDQHWDNSPGKNMYGLNREVAKELSRRYPCITKAVDTGRVADIRNNTIKDYSPTINVV 600 TY ++HWDNSPG NMYGL AKEL+RRYPCI KAVDTGRVAD+R +TIKDY+P INVV Sbjct 1074 TYTNEHWDNSPGPNMYGLCMRTAKELARRYPCILKAVDTGRVADVRTDTIKDYNPLINVV 1133 Query 601 PLNRRLPHSLIVDHKGQGTTDHSGFLSKMKGKSVLVIGDPISIPGKKVESMGPLPTNTIR 660 PLNRRLPHSL+V H+ G D+S ++KM GK+VLV+G P++IPGK+VE++GP P T + Sbjct 1134 PLNRRLPHSLVVTHRYTGNGDYSQLVTKMTGKTVLVVGTPMNIPGKRVETLGPSPQCTYK 1193 Query 661 CDLDLGIPSHVGKYDIIFVNVRTPYRNHHYQQCEDHAIHHSMLTCKAVHHLNTGGTCVAI 720 +LDLGIP+ +GKYDIIF+NVRTPYR+HHYQQCEDHAIHHSMLT KAV HLN GGTC+A+ Sbjct 1194 AELDLGIPAALGKYDIIFINVRTPYRHHHYQQCEDHAIHHSMLTRKAVDHLNKGGTCIAL 1253 Query 721 GYGLADRATENIITAVARSFRFTRVCQPKNTAENTEVLFVFFGKDNGNHTHDQDRLGVVL 780 GYG ADRATENII+AVARSFRF+RVCQPK ENTEV FVFFGKDNGNH DQDRL VVL Sbjct 1254 GYGTADRATENIISAVARSFRFSRVCQPKCAWENTEVAFVFFGKDNGNHLQDQDRLSVVL 1313 Query 781 DNIYQGSTRYEAGR 794 +NIYQGST++EAGR Sbjct 1314 NNIYQGSTQHEAGR 1327 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Eastern equine encephalitis virus (strain PE-3.0815)] Sequence ID: Q306W8.3 Length: 2474 Range 1: 534 to 1327 Score:1431 bits(3705), Expect:0.0, Method:Compositional matrix adjust., Identities:664/794(84%), Positives:733/794(92%), Gaps:0/794(0%) Query 1 GSVETPRGHIRVTSYPGEEKIGSYAILSPQAVLNSEKLACIHPLAEQVLVMTHKGRAGRY 60 GSVETPR HI+VT+YPGEE IGSYA+LSPQAVLNSEKLACIHPLAEQVLVMTHKGRAGRY Sbjct 534 GSVETPRRHIKVTTYPGEETIGSYAVLSPQAVLNSEKLACIHPLAEQVLVMTHKGRAGRY 593 Query 61 KVEPYHGKVIVPEGTAVPVQDFQALSESATIVFNEREFVNRYLHHIAINGGALNTDEEYY 120 KVEPYHG+V+VP GTA+P+ DFQALSESATIV+NEREFVNRYLHHIAINGGA+NTDEEYY Sbjct 594 KVEPYHGRVVVPSGTAIPIPDFQALSESATIVYNEREFVNRYLHHIAINGGAINTDEEYY 653 Query 121 KTVKTQDTDSEYVFDIDARKCVKREDAGPLCLTGDLVDPPFHEFAYESLKTRPAAPHKVP 180 K +++ + DSEYVFDIDARKCVK+ DAGP+CL G+LVDPPFHEFAYESLKTRPAAPHKVP Sbjct 654 KVLRSSEADSEYVFDIDARKCVKKADAGPMCLVGELVDPPFHEFAYESLKTRPAAPHKVP 713 Query 181 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVRRMRRMDVAARTVDSVLLN 240 TIGVYGVPGSGKSGIIKSAVTK+DLVVSAKKENC EII+DV+RMR MD+AARTVDSVLLN Sbjct 714 TIGVYGVPGSGKSGIIKSAVTKRDLVVSAKKENCTEIIKDVKRMRGMDIAARTVDSVLLN 773 Query 241 GVKHPVNTLYIDEAFACHAGTLLALIAIVKPKKVVLCGDPKQCGFFNMMCLKVHFNHDIC 300 GVKHPV+TLYIDEAFACHAGTLLALIAIVKPKKVVLCGDPKQCGFFNMMCLKVHFNH+IC Sbjct 774 GVKHPVDTLYIDEAFACHAGTLLALIAIVKPKKVVLCGDPKQCGFFNMMCLKVHFNHEIC 833 Query 301 TEVYHKSISRRCTQTVTAIVSTLFYDKRMKTVNPCADKIIIDTTGTTKPHKDDLILTCFR 360 TEVYHKSISRRCT+TVTAIVSTLFYDKRM+TVNPC+DKIIIDTT TTKP +DD+ILTCFR Sbjct 834 TEVYHKSISRRCTKTVTAIVSTLFYDKRMRTVNPCSDKIIIDTTSTTKPQRDDIILTCFR 893 Query 361 GWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRYKVNENPLYSQTSEHVNVLLTRTEKRI 420 GWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRYKVNENPLY+QTSEHVNVLLTRTEKRI Sbjct 894 GWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRYKVNENPLYAQTSEHVNVLLTRTEKRI 953 Query 421 VWKTLAGDPWIKTLTAKYPGDFTASLDDWQREHDAIMARVLDKPQTADVFQNKVNVCWAK 480 VWKTLAGDPWIKTLTA YPG+F+A+L++WQ EHDAIM R+L+ P ++DV+QNKV+VCWAK Sbjct 954 VWKTLAGDPWIKTLTAHYPGEFSATLEEWQAEHDAIMERILETPASSDVYQNKVHVCWAK 1013 Query 481 ALEPVLATANIVLTRQQWETLHPFKHDRAYSPEMALNFFCTRFFGVDLDSGLFSAPTVAL 540 ALEPVLATANI LTR QWET+ FK D+A+SPEMALNF CTRFFGVD+DSGLFSAPTV L Sbjct 1014 ALEPVLATANITLTRSQWETIPAFKDDKAFSPEMALNFLCTRFFGVDIDSGLFSAPTVPL 1073 Query 541 TYRDQHWDNSPGKNMYGLNREVAKELSRRYPCITKAVDTGRVADIRNNTIKDYSPTINVV 600 TY ++HWDNSPG N YGL AKEL+RRYPCI KAVDTGR+AD+R NTIKDYSP INVV Sbjct 1074 TYTNEHWDNSPGPNRYGLCMRTAKELARRYPCILKAVDTGRLADVRTNTIKDYSPLINVV 1133 Query 601 PLNRRLPHSLIVDHKGQGTTDHSGFLSKMKGKSVLVIGDPISIPGKKVESMGPLPTNTIR 660 PLNRRLPHSL+V H+ G ++S LSK+ GK+VLVIG PIS+PGK+VE++GP P T + Sbjct 1134 PLNRRLPHSLVVSHRYTGDGNYSQLLSKLIGKTVLVIGTPISVPGKRVETLGPGPQCTYK 1193 Query 661 CDLDLGIPSHVGKYDIIFVNVRTPYRNHHYQQCEDHAIHHSMLTCKAVHHLNTGGTCVAI 720 DLDLGIPS +GKYDIIFVNVRTPY++HHYQQCEDHAIHHSMLT KAV HLN GGTCVA+ Sbjct 1194 ADLDLGIPSTIGKYDIIFVNVRTPYKHHHYQQCEDHAIHHSMLTRKAVDHLNKGGTCVAL 1253 Query 721 GYGLADRATENIITAVARSFRFTRVCQPKNTAENTEVLFVFFGKDNGNHTHDQDRLGVVL 780 GYG ADRATENII+AVARSFRF+RVCQPK ENTEV FVFFGKDNGNH DQD+L +VL Sbjct 1254 GYGTADRATENIISAVARSFRFSRVCQPKCAWENTEVAFVFFGKDNGNHLRDQDQLSIVL 1313 Query 781 DNIYQGSTRYEAGR 794 +NIYQGST+YEAGR Sbjct 1314 NNIYQGSTQYEAGR 1327 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Eastern equine encephalitis virus (strain PE-0.0155)] Sequence ID: Q306W6.3 Length: 2471 Range 1: 534 to 1327 Score:1428 bits(3696), Expect:0.0, Method:Compositional matrix adjust., Identities:665/794(84%), Positives:732/794(92%), Gaps:0/794(0%) Query 1 GSVETPRGHIRVTSYPGEEKIGSYAILSPQAVLNSEKLACIHPLAEQVLVMTHKGRAGRY 60 GSVETPR HI+VT+YPGEE IGSYA+LSPQAVLNSEKLACIHPLAEQVLVMTHKGRAGRY Sbjct 534 GSVETPRRHIKVTTYPGEEMIGSYAVLSPQAVLNSEKLACIHPLAEQVLVMTHKGRAGRY 593 Query 61 KVEPYHGKVIVPEGTAVPVQDFQALSESATIVFNEREFVNRYLHHIAINGGALNTDEEYY 120 KVEPYHG+VIVP GTA+P+ DFQALSESATIV+NEREFVNRYLHHIAINGGALNTDEEYY Sbjct 594 KVEPYHGRVIVPSGTAIPIPDFQALSESATIVYNEREFVNRYLHHIAINGGALNTDEEYY 653 Query 121 KTVKTQDTDSEYVFDIDARKCVKREDAGPLCLTGDLVDPPFHEFAYESLKTRPAAPHKVP 180 K +++ + +SEYVFDIDA+KCVK+ +AGP+CL GDLVDPPFHEFAYESLKTRPAAPHKVP Sbjct 654 KVLRSGEAESEYVFDIDAKKCVKKAEAGPMCLVGDLVDPPFHEFAYESLKTRPAAPHKVP 713 Query 181 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVRRMRRMDVAARTVDSVLLN 240 TIGVYGVPGSGKSGIIKSAVTK+DLVVSAKKENC EII+DV+RMR MDVAARTVDSVLLN Sbjct 714 TIGVYGVPGSGKSGIIKSAVTKRDLVVSAKKENCTEIIKDVKRMRGMDVAARTVDSVLLN 773 Query 241 GVKHPVNTLYIDEAFACHAGTLLALIAIVKPKKVVLCGDPKQCGFFNMMCLKVHFNHDIC 300 GVKHPV+TLYIDEAFACHAGTLLALIAIVKPKKVVLCGDPKQCGFFNMMCLKVHFNH+IC Sbjct 774 GVKHPVDTLYIDEAFACHAGTLLALIAIVKPKKVVLCGDPKQCGFFNMMCLKVHFNHEIC 833 Query 301 TEVYHKSISRRCTQTVTAIVSTLFYDKRMKTVNPCADKIIIDTTGTTKPHKDDLILTCFR 360 TEVYHKSISRRCT+TVTAIVSTLFYDKRM+TVNPC+DKIIIDTT TTKP KDD+ILTCFR Sbjct 834 TEVYHKSISRRCTRTVTAIVSTLFYDKRMRTVNPCSDKIIIDTTSTTKPLKDDIILTCFR 893 Query 361 GWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRYKVNENPLYSQTSEHVNVLLTRTEKRI 420 GWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRYKVNENPLY+QTSEHVNVLLTRTEKRI Sbjct 894 GWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRYKVNENPLYAQTSEHVNVLLTRTEKRI 953 Query 421 VWKTLAGDPWIKTLTAKYPGDFTASLDDWQREHDAIMARVLDKPQTADVFQNKVNVCWAK 480 VWKTLAGDPWIKTLTA YPG+F+A+L++WQ EHDAIM RVL+ P +DV+QNKV+VCWAK Sbjct 954 VWKTLAGDPWIKTLTAHYPGEFSATLEEWQAEHDAIMKRVLETPANSDVYQNKVHVCWAK 1013 Query 481 ALEPVLATANIVLTRQQWETLHPFKHDRAYSPEMALNFFCTRFFGVDLDSGLFSAPTVAL 540 ALEPVLATANI LTR QWET+ FK D+A+SPEMALNF CTRFFGVD+DSGLFSAPTV L Sbjct 1014 ALEPVLATANITLTRSQWETIPAFKDDKAFSPEMALNFLCTRFFGVDIDSGLFSAPTVPL 1073 Query 541 TYRDQHWDNSPGKNMYGLNREVAKELSRRYPCITKAVDTGRVADIRNNTIKDYSPTINVV 600 TY ++HWDNSPG N YGL AKEL+RRYPCI KAVDTGRVAD+R NTI+DY+P INVV Sbjct 1074 TYTNEHWDNSPGPNRYGLCMRTAKELARRYPCILKAVDTGRVADVRTNTIRDYNPMINVV 1133 Query 601 PLNRRLPHSLIVDHKGQGTTDHSGFLSKMKGKSVLVIGDPISIPGKKVESMGPLPTNTIR 660 PLNRRLPHSL+V H+ G ++S LSK+ GK++LVIG PI++PGK+VE++GP P T + Sbjct 1134 PLNRRLPHSLVVSHRYTGDGNYSQLLSKLTGKTILVIGTPINVPGKRVETLGPGPQCTYK 1193 Query 661 CDLDLGIPSHVGKYDIIFVNVRTPYRNHHYQQCEDHAIHHSMLTCKAVHHLNTGGTCVAI 720 DLDLGIPS +GKYDIIFVNVRTPY++HHYQQCEDHAIHHSMLT KAV HLN GGTCVA+ Sbjct 1194 ADLDLGIPSMIGKYDIIFVNVRTPYKHHHYQQCEDHAIHHSMLTRKAVDHLNKGGTCVAL 1253 Query 721 GYGLADRATENIITAVARSFRFTRVCQPKNTAENTEVLFVFFGKDNGNHTHDQDRLGVVL 780 GYG ADRATENII+AVARSFRF+RVCQPK ENTEV FVFFGKDNGNH DQD+L VVL Sbjct 1254 GYGTADRATENIISAVARSFRFSRVCQPKCAWENTEVAFVFFGKDNGNHLRDQDQLSVVL 1313 Query 781 DNIYQGSTRYEAGR 794 +NIYQGST+YEAGR Sbjct 1314 NNIYQGSTQYEAGR 1327 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain Trinidad donkey)] Sequence ID: P27282.3 Length: 2493 Range 1: 536 to 1328 Score:1241 bits(3212), Expect:0.0, Method:Compositional matrix adjust., Identities:580/793(73%), Positives:676/793(85%), Gaps:0/793(0%) Query 1 GSVETPRGHIRVTSYPGEEKIGSYAILSPQAVLNSEKLACIHPLAEQVLVMTHKGRAGRY 60 GSVETPRG I+VTSY GE+KIGSYA+LSPQAVL SEKL+CIHPLAEQV+V+TH GR GRY Sbjct 536 GSVETPRGLIKVTSYAGEDKIGSYAVLSPQAVLKSEKLSCIHPLAEQVIVITHSGRKGRY 595 Query 61 KVEPYHGKVIVPEGTAVPVQDFQALSESATIVFNEREFVNRYLHHIAINGGALNTDEEYY 120 VEPYHGKV+VPEG A+PVQDFQALSESATIV+NEREFVNRYLHHIA +GGALNTDEEYY Sbjct 596 AVEPYHGKVVVPEGHAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYY 655 Query 121 KTVKTQDTDSEYVFDIDARKCVKREDAGPLCLTGDLVDPPFHEFAYESLKTRPAAPHKVP 180 KTVK + D EY++DID ++CVK+E L LTG+LVDPPFHEFAYESL+TRPAAP++VP Sbjct 656 KTVKPSEHDGEYLYDIDRKQCVKKELVTGLGLTGELVDPPFHEFAYESLRTRPAAPYQVP 715 Query 181 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVRRMRRMDVAARTVDSVLLN 240 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDV++M+ +DV ARTVDSVLLN Sbjct 716 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLN 775 Query 241 GVKHPVNTLYIDEAFACHAGTLLALIAIVKPKKVVLCGDPKQCGFFNMMCLKVHFNHDIC 300 G KHPV TLYIDEAFACHAGTL ALIAI++PKK VLCGDPKQCGFFNMMCLKVHFNH+IC Sbjct 776 GCKHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCGFFNMMCLKVHFNHEIC 835 Query 301 TEVYHKSISRRCTQTVTAIVSTLFYDKRMKTVNPCADKIIIDTTGTTKPHKDDLILTCFR 360 T+V+HKSISRRCT++VT++VSTLFYDK+M+T NP KI+IDTTG+TKP +DDLILTCFR Sbjct 836 TQVFHKSISRRCTKSVTSVVSTLFYDKKMRTTNPKETKIVIDTTGSTKPKQDDLILTCFR 895 Query 361 GWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRYKVNENPLYSQTSEHVNVLLTRTEKRI 420 GWVKQLQIDYK +EIMTAAASQGLTRKGVYAVRYKVNENPLY+ TSEHVNVLLTRTE RI Sbjct 896 GWVKQLQIDYKGNEIMTAAASQGLTRKGVYAVRYKVNENPLYAPTSEHVNVLLTRTEDRI 955 Query 421 VWKTLAGDPWIKTLTAKYPGDFTASLDDWQREHDAIMARVLDKPQTADVFQNKVNVCWAK 480 VWKTLAGDPWIKTLTAKYPG+FTA++++WQ EHDAIM +L++P DVFQNK NVCWAK Sbjct 956 VWKTLAGDPWIKTLTAKYPGNFTATIEEWQAEHDAIMRHILERPDPTDVFQNKANVCWAK 1015 Query 481 ALEPVLATANIVLTRQQWETLHPFKHDRAYSPEMALNFFCTRFFGVDLDSGLFSAPTVAL 540 AL PVL TA I +T +QW T+ F+ D+A+S E+ LN C RFFG+DLDSGLFSAPTV L Sbjct 1016 ALVPVLKTAGIDMTTEQWNTVDYFETDKAHSAEIVLNQLCVRFFGLDLDSGLFSAPTVPL 1075 Query 541 TYRDQHWDNSPGKNMYGLNREVAKELSRRYPCITKAVDTGRVADIRNNTIKDYSPTINVV 600 + R+ HWDNSP NMYGLN+EV ++LSRRYP + +AV TGRV D+ T+++Y P IN+V Sbjct 1076 SIRNNHWDNSPSPNMYGLNKEVVRQLSRRYPQLPRAVATGRVYDMNTGTLRNYDPRINLV 1135 Query 601 PLNRRLPHSLIVDHKGQGTTDHSGFLSKMKGKSVLVIGDPISIPGKKVESMGPLPTNTIR 660 P+NRRLPH+L++ H +D S F+SK+KG++VLV+G+ +S+PGK V+ + P T R Sbjct 1136 PVNRRLPHALVLHHNEHPQSDFSSFVSKLKGRTVLVVGEKLSVPGKMVDWLSDRPEATFR 1195 Query 661 CDLDLGIPSHVGKYDIIFVNVRTPYRNHHYQQCEDHAIHHSMLTCKAVHHLNTGGTCVAI 720 LDLGIP V KYDIIFVNVRTPY+ HHYQQCEDHAI SMLT KA HLN GGTCV+I Sbjct 1196 ARLDLGIPGDVPKYDIIFVNVRTPYKYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSI 1255 Query 721 GYGLADRATENIITAVARSFRFTRVCQPKNTAENTEVLFVFFGKDNGNHTHDQDRLGVVL 780 GYG ADRA+E+II A+AR F+F+RVC+PK++ E TEVLFVF G D TH+ +L L Sbjct 1256 GYGYADRASESIIGAIARQFKFSRVCKPKSSLEETEVLFVFIGYDRKARTHNPYKLSSTL 1315 Query 781 DNIYQGSTRYEAG 793 NIY GS +EAG Sbjct 1316 TNIYTGSRLHEAG 1328 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain P676)] Sequence ID: P36328.2 Length: 2493 Range 1: 536 to 1328 Score:1241 bits(3211), Expect:0.0, Method:Compositional matrix adjust., Identities:579/793(73%), Positives:676/793(85%), Gaps:0/793(0%) Query 1 GSVETPRGHIRVTSYPGEEKIGSYAILSPQAVLNSEKLACIHPLAEQVLVMTHKGRAGRY 60 GSVETPRG I+VTSY GE+KIGSYA+LSPQAVL SEKL+CIHPLAEQV+V+TH GR GRY Sbjct 536 GSVETPRGLIKVTSYAGEDKIGSYAVLSPQAVLKSEKLSCIHPLAEQVIVITHSGRKGRY 595 Query 61 KVEPYHGKVIVPEGTAVPVQDFQALSESATIVFNEREFVNRYLHHIAINGGALNTDEEYY 120 VEPYHGKV+VPEG A+PVQDFQALSESATIV+NEREFVNRYLHHIA +GGALNTDEEYY Sbjct 596 AVEPYHGKVVVPEGHAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYY 655 Query 121 KTVKTQDTDSEYVFDIDARKCVKREDAGPLCLTGDLVDPPFHEFAYESLKTRPAAPHKVP 180 KTVK + D EY++DID ++CVK+E L LTG+LVDPPFHEFAYESL+TRPAAP++VP Sbjct 656 KTVKPSEHDGEYLYDIDRKQCVKKELVTGLGLTGELVDPPFHEFAYESLRTRPAAPYQVP 715 Query 181 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVRRMRRMDVAARTVDSVLLN 240 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDV++M+ +DV ARTVDSVLLN Sbjct 716 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLN 775 Query 241 GVKHPVNTLYIDEAFACHAGTLLALIAIVKPKKVVLCGDPKQCGFFNMMCLKVHFNHDIC 300 G KHPV TLYIDEAFACHAGTL ALIAI++PKK VLCGDPKQCGFFNMMCLKVHFNH+IC Sbjct 776 GCKHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCGFFNMMCLKVHFNHEIC 835 Query 301 TEVYHKSISRRCTQTVTAIVSTLFYDKRMKTVNPCADKIIIDTTGTTKPHKDDLILTCFR 360 T+V+HKSISRRCT++VT++VSTLFYDKRM+T NP KI+IDTTG+TKP +DDLILTCFR Sbjct 836 TQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPKETKIVIDTTGSTKPKQDDLILTCFR 895 Query 361 GWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRYKVNENPLYSQTSEHVNVLLTRTEKRI 420 GWVKQLQIDYK +EIMTAAASQGLTRKGVYAVRYKVNENPLY+ TSEHVNVLLTRTE RI Sbjct 896 GWVKQLQIDYKGNEIMTAAASQGLTRKGVYAVRYKVNENPLYAPTSEHVNVLLTRTEDRI 955 Query 421 VWKTLAGDPWIKTLTAKYPGDFTASLDDWQREHDAIMARVLDKPQTADVFQNKVNVCWAK 480 VWKTLAGDPWIK LTAKYPG+FTA++++WQ EHDAIM +L++P DVFQNK NVCWAK Sbjct 956 VWKTLAGDPWIKILTAKYPGNFTATIEEWQAEHDAIMRHILERPDPTDVFQNKANVCWAK 1015 Query 481 ALEPVLATANIVLTRQQWETLHPFKHDRAYSPEMALNFFCTRFFGVDLDSGLFSAPTVAL 540 AL PVL TA I +T +QW T+ F+ D+A+S E+ LN C RFFG+DLDSGLFSAPTV L Sbjct 1016 ALVPVLKTAGIDMTTEQWNTVDYFETDKAHSAEIVLNQLCVRFFGLDLDSGLFSAPTVPL 1075 Query 541 TYRDQHWDNSPGKNMYGLNREVAKELSRRYPCITKAVDTGRVADIRNNTIKDYSPTINVV 600 + R+ HWDNSP NMYGLN+EV ++LSRRYP + +AV TGRV D+ T+++Y P IN+V Sbjct 1076 SIRNNHWDNSPSPNMYGLNKEVVRQLSRRYPQLPRAVATGRVYDMNTGTLRNYDPRINLV 1135 Query 601 PLNRRLPHSLIVDHKGQGTTDHSGFLSKMKGKSVLVIGDPISIPGKKVESMGPLPTNTIR 660 P+NRRLPH+L++ H +D S F+SK+KG++VLV+G+ +S+PGKKV+ + P T R Sbjct 1136 PVNRRLPHALVLHHNEHPQSDFSSFVSKLKGRTVLVVGEKLSVPGKKVDWLSDQPEATFR 1195 Query 661 CDLDLGIPSHVGKYDIIFVNVRTPYRNHHYQQCEDHAIHHSMLTCKAVHHLNTGGTCVAI 720 LDLGIP V KYDI+F+NVRTPY+ HHYQQCEDHAI SMLT KA HLN GGTCV+I Sbjct 1196 ARLDLGIPGDVPKYDIVFINVRTPYKYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSI 1255 Query 721 GYGLADRATENIITAVARSFRFTRVCQPKNTAENTEVLFVFFGKDNGNHTHDQDRLGVVL 780 GYG ADRA+E+II A+AR F+F+RVC+PK++ E TEVLFVF G D TH+ +L L Sbjct 1256 GYGYADRASESIIGAIARQFKFSRVCKPKSSHEETEVLFVFIGYDRKARTHNPYKLSSTL 1315 Query 781 DNIYQGSTRYEAG 793 NIY GS +EAG Sbjct 1316 TNIYTGSRLHEAG 1328 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain 3880)] Sequence ID: P36327.3 Length: 2485 Range 1: 536 to 1328 Score:1238 bits(3202), Expect:0.0, Method:Compositional matrix adjust., Identities:578/793(73%), Positives:675/793(85%), Gaps:0/793(0%) Query 1 GSVETPRGHIRVTSYPGEEKIGSYAILSPQAVLNSEKLACIHPLAEQVLVMTHKGRAGRY 60 GSVETPRG I+VTSY GE+KIGSYA+LSPQAVL SEKL+CIHPLAEQV+V+TH GR GRY Sbjct 536 GSVETPRGLIKVTSYAGEDKIGSYAVLSPQAVLKSEKLSCIHPLAEQVIVITHSGRKGRY 595 Query 61 KVEPYHGKVIVPEGTAVPVQDFQALSESATIVFNEREFVNRYLHHIAINGGALNTDEEYY 120 VEPYHGKV+VPEG A+PVQDFQALSESATIV+NEREFVNRYLHHIA +GGALNTDEEYY Sbjct 596 AVEPYHGKVVVPEGHAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYY 655 Query 121 KTVKTQDTDSEYVFDIDARKCVKREDAGPLCLTGDLVDPPFHEFAYESLKTRPAAPHKVP 180 KTVK + D EY++DID ++CVK+E L LTG+LVDPPFHEFAYESL+TRPAAP++VP Sbjct 656 KTVKPSEHDGEYLYDIDRKQCVKKELVTGLGLTGELVDPPFHEFAYESLRTRPAAPYQVP 715 Query 181 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVRRMRRMDVAARTVDSVLLN 240 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDV+R++ +DV ARTVDSVLLN Sbjct 716 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKRIKGLDVNARTVDSVLLN 775 Query 241 GVKHPVNTLYIDEAFACHAGTLLALIAIVKPKKVVLCGDPKQCGFFNMMCLKVHFNHDIC 300 G K+PV TLYIDEAFACHAGTL ALIAI++PKK VLCGDPKQCGFFNMMCLKVHFNH+IC Sbjct 776 GCKYPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCGFFNMMCLKVHFNHEIC 835 Query 301 TEVYHKSISRRCTQTVTAIVSTLFYDKRMKTVNPCADKIIIDTTGTTKPHKDDLILTCFR 360 T+V+HKSISRRCT++VT++VSTLFYDKRM+T NP KI IDTTG+TKP +DDLILTCFR Sbjct 836 TQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPKETKIEIDTTGSTKPKQDDLILTCFR 895 Query 361 GWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRYKVNENPLYSQTSEHVNVLLTRTEKRI 420 GWVKQLQIDYK +E+MTAAASQGLTRKGVYAVRYKVNENPLY+ TSEHVNVLLTRTE RI Sbjct 896 GWVKQLQIDYKGNEVMTAAASQGLTRKGVYAVRYKVNENPLYAPTSEHVNVLLTRTEDRI 955 Query 421 VWKTLAGDPWIKTLTAKYPGDFTASLDDWQREHDAIMARVLDKPQTADVFQNKVNVCWAK 480 VWKTLAGDPWIKTLTAKYPG+FTA++++WQ EHDAIM +L++P DVFQNK NVCWAK Sbjct 956 VWKTLAGDPWIKTLTAKYPGNFTATIEEWQAEHDAIMRHILERPDPTDVFQNKANVCWAK 1015 Query 481 ALEPVLATANIVLTRQQWETLHPFKHDRAYSPEMALNFFCTRFFGVDLDSGLFSAPTVAL 540 AL PVL TA I +T +QW T+ F+ D+A+S E+ LN C RFFG+DLDSGLFSAPTV L Sbjct 1016 ALVPVLKTAGIDMTTEQWNTVDYFETDKAHSAEIVLNQLCVRFFGLDLDSGLFSAPTVPL 1075 Query 541 TYRDQHWDNSPGKNMYGLNREVAKELSRRYPCITKAVDTGRVADIRNNTIKDYSPTINVV 600 + R+ HWDNSP NMYGLN+EV ++LSRRYP + +AV TGRV D+ T+++Y P IN+V Sbjct 1076 SIRNNHWDNSPSPNMYGLNKEVVRQLSRRYPQLPRAVTTGRVYDMNTGTLRNYDPRINLV 1135 Query 601 PLNRRLPHSLIVDHKGQGTTDHSGFLSKMKGKSVLVIGDPISIPGKKVESMGPLPTNTIR 660 P+NRRLPH+L++ H +D S F+SK+KG++VLV+G+ +S+PGK V+ + P T R Sbjct 1136 PVNRRLPHALVLHHNEHPQSDFSSFVSKLKGRTVLVVGEKLSVPGKTVDWLSDRPEATFR 1195 Query 661 CDLDLGIPSHVGKYDIIFVNVRTPYRNHHYQQCEDHAIHHSMLTCKAVHHLNTGGTCVAI 720 LDLGIP V KYDIIF+NVRTPY+ HHYQQCEDHAI SMLT KA HLN GGTCV+I Sbjct 1196 ARLDLGIPGDVPKYDIIFINVRTPYKYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSI 1255 Query 721 GYGLADRATENIITAVARSFRFTRVCQPKNTAENTEVLFVFFGKDNGNHTHDQDRLGVVL 780 GYG ADRA+E+II A+AR F+F+RVC+PK++ E TEVLFVF G D TH+ +L L Sbjct 1256 GYGYADRASESIIGAIARQFKFSRVCKPKSSLEETEVLFVFIGYDRKARTHNPYKLSSTL 1315 Query 781 DNIYQGSTRYEAG 793 NIY GS +EAG Sbjct 1316 TNIYTGSRLHEAG 1328 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain CPA201)] Sequence ID: Q8V294.3 Length: 2497 Range 1: 536 to 1328 Score:1237 bits(3200), Expect:0.0, Method:Compositional matrix adjust., Identities:581/793(73%), Positives:670/793(84%), Gaps:0/793(0%) Query 1 GSVETPRGHIRVTSYPGEEKIGSYAILSPQAVLNSEKLACIHPLAEQVLVMTHKGRAGRY 60 GSVETPRG I+VTSY GE+KIGSYA+LSPQAVL SEKL CIHPLAEQV+V+TH GR GRY Sbjct 536 GSVETPRGLIKVTSYAGEDKIGSYAVLSPQAVLRSEKLTCIHPLAEQVIVITHSGRKGRY 595 Query 61 KVEPYHGKVIVPEGTAVPVQDFQALSESATIVFNEREFVNRYLHHIAINGGALNTDEEYY 120 VEPYHGKV+VPEG A+PVQDFQALSESATIV+NEREFVNRYLHHIA +GGALNTDEEYY Sbjct 596 AVEPYHGKVVVPEGQAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYY 655 Query 121 KTVKTQDTDSEYVFDIDARKCVKREDAGPLCLTGDLVDPPFHEFAYESLKTRPAAPHKVP 180 + VK + + EY++DID ++CVK+E L LTG+LVDPPFHEFAYESL+TRPAAP++VP Sbjct 656 RVVKPSEHEGEYLYDIDKKQCVKKELVSGLGLTGELVDPPFHEFAYESLRTRPAAPYQVP 715 Query 181 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVRRMRRMDVAARTVDSVLLN 240 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDV++M+ +DV ARTVDSVLLN Sbjct 716 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLN 775 Query 241 GVKHPVNTLYIDEAFACHAGTLLALIAIVKPKKVVLCGDPKQCGFFNMMCLKVHFNHDIC 300 G KHPV TLYIDEAFACHAGTL ALIAI++PKK VLCGDPKQCGFFNMMCLKVHFNH+IC Sbjct 776 GCKHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCGFFNMMCLKVHFNHEIC 835 Query 301 TEVYHKSISRRCTQTVTAIVSTLFYDKRMKTVNPCADKIIIDTTGTTKPHKDDLILTCFR 360 T+V+HKSISRRCT++VT++VSTLFYDKRM+T NP KI IDTTG+TKP KDDLILTCFR Sbjct 836 TQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPRDSKIEIDTTGSTKPKKDDLILTCFR 895 Query 361 GWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRYKVNENPLYSQTSEHVNVLLTRTEKRI 420 GWVKQLQIDYK +EIMTAAASQGLTRKGVYAVRYKVNENPLY+ TSEHVNVLLTRTE +I Sbjct 896 GWVKQLQIDYKGNEIMTAAASQGLTRKGVYAVRYKVNENPLYAPTSEHVNVLLTRTEDKI 955 Query 421 VWKTLAGDPWIKTLTAKYPGDFTASLDDWQREHDAIMARVLDKPQTADVFQNKVNVCWAK 480 VWKTLAGDPWIKTLTAKYPGDFTA++++WQ EHDAIM +L+KP DVFQNK NVCWAK Sbjct 956 VWKTLAGDPWIKTLTAKYPGDFTATMEEWQAEHDAIMRHILEKPDPTDVFQNKANVCWAK 1015 Query 481 ALEPVLATANIVLTRQQWETLHPFKHDRAYSPEMALNFFCTRFFGVDLDSGLFSAPTVAL 540 AL PVL TA I LT +QW T+ FK D+A+S E+ LN C RFFG+DLDSGLFSAPTV L Sbjct 1016 ALVPVLKTAGIDLTTEQWNTVDYFKEDKAHSAEIVLNQLCVRFFGLDLDSGLFSAPTVPL 1075 Query 541 TYRDQHWDNSPGKNMYGLNREVAKELSRRYPCITKAVDTGRVADIRNNTIKDYSPTINVV 600 + R+ HWDNSP NMYGLN+EV ++LSRRYP + +AV TGR D+ T+++Y P IN+V Sbjct 1076 SIRNNHWDNSPSPNMYGLNKEVVRQLSRRYPQLPRAVTTGRAYDMNTGTLRNYDPRINLV 1135 Query 601 PLNRRLPHSLIVDHKGQGTTDHSGFLSKMKGKSVLVIGDPISIPGKKVESMGPLPTNTIR 660 P+NRRLPH+L+ H +D S F+SK+KG++VLV+G+ +SI GK V+ + P +T R Sbjct 1136 PVNRRLPHALVTQHADYPPSDFSAFVSKLKGRTVLVVGEKMSISGKTVDWLSETPDSTFR 1195 Query 661 CDLDLGIPSHVGKYDIIFVNVRTPYRNHHYQQCEDHAIHHSMLTCKAVHHLNTGGTCVAI 720 LDLGIPS + KYDI+FVNVRT YR HHYQQCEDHAI SMLT KA HLN GGTCV+I Sbjct 1196 ARLDLGIPSELPKYDIVFVNVRTQYRYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSI 1255 Query 721 GYGLADRATENIITAVARSFRFTRVCQPKNTAENTEVLFVFFGKDNGNHTHDQDRLGVVL 780 GYG ADRA+E+II AVAR F+F+RVC+PK + E TEVLFVF G D TH+ +L L Sbjct 1256 GYGYADRASESIIGAVARQFKFSRVCKPKVSKEETEVLFVFIGFDRKTRTHNPYKLSSTL 1315 Query 781 DNIYQGSTRYEAG 793 NIY GS +EAG Sbjct 1316 TNIYTGSRLHEAG 1328 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain Mena II)] Sequence ID: Q9WJC7.3 Length: 2499 Range 1: 536 to 1328 Score:1225 bits(3170), Expect:0.0, Method:Compositional matrix adjust., Identities:576/793(73%), Positives:667/793(84%), Gaps:0/793(0%) Query 1 GSVETPRGHIRVTSYPGEEKIGSYAILSPQAVLNSEKLACIHPLAEQVLVMTHKGRAGRY 60 GSVETPRG I+VTSY GE+KIGSYA+LSPQAVL SEKL CIHPLAEQV+V+TH GR GRY Sbjct 536 GSVETPRGLIKVTSYGGEDKIGSYAVLSPQAVLRSEKLTCIHPLAEQVIVITHSGRKGRY 595 Query 61 KVEPYHGKVIVPEGTAVPVQDFQALSESATIVFNEREFVNRYLHHIAINGGALNTDEEYY 120 VEPYHGKV+VPEG A+PVQDFQALSESATIV+NEREFVNRYLHHIA +GGALNTDEEYY Sbjct 596 AVEPYHGKVVVPEGQAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYY 655 Query 121 KTVKTQDTDSEYVFDIDARKCVKREDAGPLCLTGDLVDPPFHEFAYESLKTRPAAPHKVP 180 + VK + + EY++DID ++CVK+E L LTG+LVDPPFHEFAYESL+TRPAAP++VP Sbjct 656 RVVKPSEHEGEYLYDIDKKQCVKKELVSGLGLTGELVDPPFHEFAYESLRTRPAAPYQVP 715 Query 181 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVRRMRRMDVAARTVDSVLLN 240 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDV++M+ +DV ARTVDSVLLN Sbjct 716 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLN 775 Query 241 GVKHPVNTLYIDEAFACHAGTLLALIAIVKPKKVVLCGDPKQCGFFNMMCLKVHFNHDIC 300 G KHPV TLYIDEAFACHAGTL ALIAI++PKK VLCGDPKQCGFFNMMCLKVHFNH+IC Sbjct 776 GCKHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCGFFNMMCLKVHFNHEIC 835 Query 301 TEVYHKSISRRCTQTVTAIVSTLFYDKRMKTVNPCADKIIIDTTGTTKPHKDDLILTCFR 360 T+V+HKSISRRCT++VT++VSTLFYDKRM+T NP KI IDTTG+TK K+DLILTCFR Sbjct 836 TQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPRDSKIEIDTTGSTKSKKEDLILTCFR 895 Query 361 GWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRYKVNENPLYSQTSEHVNVLLTRTEKRI 420 GWVKQLQIDYK +EIMTAAASQGLTRK VYAVRYKVNENPLY+ TSEHVNVLLTRTE +I Sbjct 896 GWVKQLQIDYKGNEIMTAAASQGLTRKSVYAVRYKVNENPLYAPTSEHVNVLLTRTEDKI 955 Query 421 VWKTLAGDPWIKTLTAKYPGDFTASLDDWQREHDAIMARVLDKPQTADVFQNKVNVCWAK 480 VWKTLAGDPWIKTLTAKYPGDFTA++++WQ EHDAIM +L+KP DVFQNK NVCWAK Sbjct 956 VWKTLAGDPWIKTLTAKYPGDFTATMEEWQAEHDAIMRHILEKPDPTDVFQNKANVCWAK 1015 Query 481 ALEPVLATANIVLTRQQWETLHPFKHDRAYSPEMALNFFCTRFFGVDLDSGLFSAPTVAL 540 AL PVL TA I LT +QW T+ FK D+A+S E+ LN C R+FG+DLDSGLFSAPTV L Sbjct 1016 ALVPVLKTAGIDLTTEQWNTVDYFKEDKAHSAEIVLNQLCVRYFGLDLDSGLFSAPTVPL 1075 Query 541 TYRDQHWDNSPGKNMYGLNREVAKELSRRYPCITKAVDTGRVADIRNNTIKDYSPTINVV 600 + R+ HWDNSP NMYGLN EV ++LSRRYP + +AV TGRV D+ T+++Y P IN+V Sbjct 1076 SIRNNHWDNSPSPNMYGLNHEVVRQLSRRYPQLPRAVTTGRVYDMNTGTLRNYDPRINLV 1135 Query 601 PLNRRLPHSLIVDHKGQGTTDHSGFLSKMKGKSVLVIGDPISIPGKKVESMGPLPTNTIR 660 P+NRRLPH+L+ H +D S F+SK+KG++VLV+G+ ++I GK V+ + P T R Sbjct 1136 PVNRRLPHALVTQHADHPPSDFSAFVSKLKGRTVLVVGEKMNISGKAVDWLSETPDATFR 1195 Query 661 CDLDLGIPSHVGKYDIIFVNVRTPYRNHHYQQCEDHAIHHSMLTCKAVHHLNTGGTCVAI 720 LDLGIP+ + KYDI+FVNVRT YR HHYQQCEDHAI SMLT KA HLN GGTCV+I Sbjct 1196 ARLDLGIPTELPKYDIVFVNVRTQYRYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSI 1255 Query 721 GYGLADRATENIITAVARSFRFTRVCQPKNTAENTEVLFVFFGKDNGNHTHDQDRLGVVL 780 GYG ADRA+E+II AVAR F+F+RVC+PK + E TEVLFVF G D TH+ +L L Sbjct 1256 GYGYADRASESIIGAVARQFKFSRVCKPKVSKEETEVLFVFIGFDRKTRTHNPYKLSSTL 1315 Query 781 DNIYQGSTRYEAG 793 NIY GS +EAG Sbjct 1316 TNIYTGSGLHEAG 1328 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Sagiyama virus] Sequence ID: Q9JGL0.3 Length: 2467 Range 1: 535 to 1331 Score:947 bits(2448), Expect:0.0, Method:Compositional matrix adjust., Identities:456/797(57%), Positives:574/797(72%), Gaps:4/797(0%) Query 1 GSVETPRGHIRVTSYPGEEKIGSYAILSPQAVLNSEKLACIHPLAEQVLVMTHKGRAGRY 60 G VETPR ++VT + IGSY ILSPQ VL SEKLA IHPLAEQV VMTH GR+GRY Sbjct 535 GVVETPRNALKVTPQAHDHLIGSYLILSPQTVLKSEKLAPIHPLAEQVTVMTHSGRSGRY 594 Query 61 KVEPYHGKVIVPEGTAVPVQDFQALSESATIVFNEREFVNRYLHHIAINGGALNTDEEYY 120 V+ Y G+V++P G A+PV +FQALSESAT+V+NEREF+NR LHHIA+ G ALNTDEE Y Sbjct 595 PVDKYDGRVLIPTGAAIPVSEFQALSESATMVYNEREFINRKLHHIALYGPALNTDEESY 654 Query 121 KTVKTQDTDSEYVFDIDARKCVKREDAGPLCLTGDLVDPPFHEFAYESLKTRPAAPHKVP 180 + V+ + ++EYVFD+D + C+K+E+A L LTGDL++PPFHEFAYE LK RPAAP+ Sbjct 655 EKVRAERAETEYVFDVDKKACIKKEEASGLVLTGDLINPPFHEFAYEGLKIRPAAPYHTT 714 Query 181 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVRRMRRMDVAARTVDSVLLN 240 IGV+GVPGSGKS IIK+ VT +DLV S KKENC EI+ DV+R R +DV ARTVDS+LLN Sbjct 715 IIGVFGVPGSGKSAIIKNMVTTRDLVASGKKENCQEIMNDVKRQRGLDVTARTVDSILLN 774 Query 241 GVKHPVNTLYIDEAFACHAGTLLALIAIVKPK-KVVLCGDPKQCGFFNMMCLKVHFNHDI 299 G K V LY+DEAFACH+GTLLALIA+V+P KVVLCGDPKQCGFFN+M LKVH+NH+I Sbjct 775 GCKRGVENLYVDEAFACHSGTLLALIALVRPSGKVVLCGDPKQCGFFNLMQLKVHYNHNI 834 Query 300 CTEVYHKSISRRCTQTVTAIVSTLFYDKRMKTVNPCADKIIIDTTGTTKPHKDDLILTCF 359 CT V HKSISRRCT VTAIVSTL Y +M+T N C I IDTTG++KP D++LTCF Sbjct 835 CTRVLHKSISRRCTLPVTAIVSTLHYQGKMRTTNRCNTPIQIDTTGSSKPASGDIVLTCF 894 Query 360 RGWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRYKVNENPLYSQTSEHVNVLLTRTEKR 419 RGWVKQLQIDY+ HE+MTAAASQGLTRKGVYAVR KVNENPLYS SEHVNVLLTRTE R Sbjct 895 RGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYSPLSEHVNVLLTRTENR 954 Query 420 IVWKTLAGDPWIKTLTAKYPGDFTASLDDWQREHDAIMARVLDKPQTADVFQNKVNVCWA 479 +VWKTL+GDPWIK LT GDF+A+L++WQ EHD IM + ++P D FQNK VCWA Sbjct 955 LVWKTLSGDPWIKVLTNVPRGDFSATLEEWQEEHDGIMRVLNERPAEVDPFQNKAKVCWA 1014 Query 480 KALEPVLATANIVLTRQQWETLHPFKHDRAYSPEMALNFFCTRFFGVDLDSGLFSAPTVA 539 K L VL TA I +T +W T+ F+ DRAYSPE+ALN CTR++GVDLDSGLFSA +V+ Sbjct 1015 KCLVQVLETAGIRMTADEWNTILAFREDRAYSPEVALNEICTRYYGVDLDSGLFSAQSVS 1074 Query 540 LTYRDQHWDNSPGKNMYGLNREVAKELSRRYPCITKAVDTGRVADIRNNTIKDYSPTINV 599 L Y + HWDN PG MYG N EVA++ + R+P + +++G ++ ++ +S N+ Sbjct 1075 LFYENNHWDNRPGGRMYGFNHEVARKYAARFPFLRGNMNSGLQLNVPERKLQPFSAECNI 1134 Query 600 VPLNRRLPHSLIVDHKGQGTTDHSGFLSKMKGKSVLVIGD-PISIPGKKVESMGP--LPT 656 VP NRRLPH+L+ ++ L K+ G +L++ + ++IP K+V + P + Sbjct 1135 VPSNRRLPHALVTSYQQCRGERVEWLLKKIPGHQMLLVSEYNLAIPHKRVFWIAPPRVSG 1194 Query 657 NTIRCDLDLGIPSHVGKYDIIFVNVRTPYRNHHYQQCEDHAIHHSMLTCKAVHHLNTGGT 716 DLDLG+P G+YD++FVN+ T YR HHYQQC DH++ ML ++H L GG+ Sbjct 1195 ADRTYDLDLGLPMDAGRYDLVFVNIHTEYRQHHYQQCVDHSMRLQMLGGDSLHLLRPGGS 1254 Query 717 CVAIGYGLADRATENIITAVARSFRFTRVCQPKNTAENTEVLFVFFGKDNGNHTHDQDRL 776 + YG ADR +E ++TA+AR F RV +P NTEV +F DNG + Sbjct 1255 LLMRAYGYADRVSEMVVTALARKFSAFRVLRPACVTSNTEVFLLFSNFDNGRRAVTLHQA 1314 Query 777 GVVLDNIYQGSTRYEAG 793 L ++Y + + AG Sbjct 1315 NQKLSSMYACNGLHTAG 1331 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Ross river virus (STRAIN NB5092)] Sequence ID: P13887.2 Length: 2480 Range 1: 534 to 1330 Score:946 bits(2446), Expect:0.0, Method:Compositional matrix adjust., Identities:453/797(57%), Positives:578/797(72%), Gaps:4/797(0%) Query 1 GSVETPRGHIRVTSYPGEEKIGSYAILSPQAVLNSEKLACIHPLAEQVLVMTHKGRAGRY 60 G VETPR ++VT ++ IG+Y ILSPQ VL SEKL IHPLAEQV +MTH GR+GRY Sbjct 534 GVVETPRNALKVTPQERDQLIGAYLILSPQTVLKSEKLTPIHPLAEQVTIMTHSGRSGRY 593 Query 61 KVEPYHGKVIVPEGTAVPVQDFQALSESATIVFNEREFVNRYLHHIAINGGALNTDEEYY 120 V+ Y G+V+VP G A+PV +FQALSESAT+V+NEREF+NR LHHIA+ G ALNTDEE Y Sbjct 594 PVDRYDGRVLVPTGAAIPVSEFQALSESATMVYNEREFINRKLHHIALYGPALNTDEENY 653 Query 121 KTVKTQDTDSEYVFDIDARKCVKREDAGPLCLTGDLVDPPFHEFAYESLKTRPAAPHKVP 180 + V+ + ++EYVFD+D R CVKREDA L L GDL++PPFHEFAYE LK RPA P + Sbjct 654 EKVRAERAEAEYVFDVDKRTCVKREDASGLVLVGDLINPPFHEFAYEGLKIRPATPFQTT 713 Query 181 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVRRMRRMDVAARTVDSVLLN 240 IGV+GVPGSGKS IIKS VT +DLV S KKENC EI+ DV++ R +DV ARTVDS+LLN Sbjct 714 VIGVFGVPGSGKSAIIKSVVTTRDLVASGKKENCQEIVNDVKKQRGLDVTARTVDSILLN 773 Query 241 GVKHPVNTLYIDEAFACHAGTLLALIAIVKPK-KVVLCGDPKQCGFFNMMCLKVHFNHDI 299 G + V LY+DEAFACH+GTLLALIA+VKP KV+LCGDPKQCGFFN+M LKV+FNHDI Sbjct 774 GCRRGVENLYVDEAFACHSGTLLALIAMVKPTGKVILCGDPKQCGFFNLMQLKVNFNHDI 833 Query 300 CTEVYHKSISRRCTQTVTAIVSTLFYDKRMKTVNPCADKIIIDTTGTTKPHKDDLILTCF 359 CT+V HKSISRRCT +TAIVSTL Y +M+T N C+ I IDTTGTTKP K D++LTCF Sbjct 834 CTQVLHKSISRRCTLPITAIVSTLHYQGKMRTTNLCSAPIQIDTTGTTKPAKGDIVLTCF 893 Query 360 RGWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRYKVNENPLYSQTSEHVNVLLTRTEKR 419 R WVKQLQIDY+ HE+MTAAASQGLTRKGVYAVR KVNENPLY+ +SEHVNVLLTRTE R Sbjct 894 RXWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYAPSSEHVNVLLTRTENR 953 Query 420 IVWKTLAGDPWIKTLTAKYPGDFTASLDDWQREHDAIMARVLDKPQTADVFQNKVNVCWA 479 +VWKTL+GDPWIK LT GDF+A+L++WQ EHD IM + ++ D FQNK VCWA Sbjct 954 LVWKTLSGDPWIKVLTNIPKGDFSATLEEWQEEHDNIMNALRERSTAVDPFQNKAKVCWA 1013 Query 480 KALEPVLATANIVLTRQQWETLHPFKHDRAYSPEMALNFFCTRFFGVDLDSGLFSAPTVA 539 K L VL TA I +T ++W+T+ F+ DRAYSPE+ALN CT+++GVDLDSGLFSA +V+ Sbjct 1014 KCLVQVLETAGIRMTAEEWDTVLAFREDRAYSPEVALNEICTKYYGVDLDSGLFSAQSVS 1073 Query 540 LTYRDQHWDNSPGKNMYGLNREVAKELSRRYPCITKAVDTGRVADIRNNTIKDYSPTINV 599 L Y + HWDN PG MYG NREVA++ +RYP + +D+G ++ ++ ++ N+ Sbjct 1074 LYYENNHWDNRPGGRMYGFNREVARKFEQRYPFLRGKMDSGLQVNVPERKVQPFNAECNI 1133 Query 600 VPLNRRLPHSLIVDHKGQGTTDHSGFLSKMKGKSVLVIGD-PISIPGKKVESMGPLPTNT 658 + LNRRLPH+L+ ++ L K+ G +L++ + +++P K+V + P + Sbjct 1134 LLLNRRLPHALVTSYQQCRGERVEWLLKKLPGYHLLLVSEYNLALPHKRVFWIAPPHVSG 1193 Query 659 IR--CDLDLGIPSHVGKYDIIFVNVRTPYRNHHYQQCEDHAIHHSMLTCKAVHHLNTGGT 716 DLDLG+P + G+YD++FVN+ T YR HHYQQC DH++ ML ++H L GG+ Sbjct 1194 ADRIYDLDLGLPLNAGRYDLVFVNIHTEYRTHHYQQCVDHSMKLQMLGGDSLHLLXPGGS 1253 Query 717 CVAIGYGLADRATENIITAVARSFRFTRVCQPKNTAENTEVLFVFFGKDNGNHTHDQDRL 776 + YG ADR +E ++TA+AR F RV +P NTEV +F DNG + Sbjct 1254 LLIRAYGYADRVSEMVVTALARKFSAFRVLRPACVTSNTEVFLLFTNFDNGRRAVTLHQA 1313 Query 777 GVVLDNIYQGSTRYEAG 793 L +++ + + AG Sbjct 1314 NQRLSSMFACNGLHTAG 1330 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Semliki Forest virus] Sequence ID: P08411.2 Length: 2432 Range 1: 538 to 1335 Score:946 bits(2446), Expect:0.0, Method:Compositional matrix adjust., Identities:457/799(57%), Positives:587/799(73%), Gaps:7/799(0%) Query 1 GSVETPRGHIRVTSYPGEEKIGSYAILSPQAVLNSEKLACIHPLAEQVLVMTHKGRAGRY 60 G VETPR ++VT+ P + +G+Y +LSPQ VL S KLA +HPLAEQV ++TH GRAGRY Sbjct 538 GVVETPRSALKVTAQPNDVLLGNYVVLSPQTVLKSSKLAPVHPLAEQVKIITHNGRAGRY 597 Query 61 KVEPYHGKVIVPEGTAVPVQDFQALSESATIVFNEREFVNRYLHHIAINGGALNTDEEYY 120 +V+ Y G+V++P G+A+PV +FQALSESAT+V+NEREFVNR L+HIA++G +LNTDEE Y Sbjct 598 QVDGYDGRVLLPCGSAIPVPEFQALSESATMVYNEREFVNRKLYHIAVHGPSLNTDEENY 657 Query 121 KTVKTQDTDSEYVFDIDARKCVKREDAGPLCLTGDLVDPPFHEFAYESLKTRPAAPHKVP 180 + V+ + TD+EYVFD+D + CVKRE+A L L G+L +PPFHEFAYE LK RP+AP+K Sbjct 658 EKVRAERTDAEYVFDVDKKCCVKREEASGLVLVGELTNPPFHEFAYEGLKIRPSAPYKTT 717 Query 181 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVRRMRRMDVAARTVDSVLLN 240 +GV+GVPGSGKS IIKS VTK DLV S KKENC EI+ DV++ R +D+ A+TVDS+LLN Sbjct 718 VVGVFGVPGSGKSAIIKSLVTKHDLVTSGKKENCQEIVNDVKKHRGLDIQAKTVDSILLN 777 Query 241 GVKHPVNTLYIDEAFACHAGTLLALIAIVKPK-KVVLCGDPKQCGFFNMMCLKVHFNHDI 299 G + V+ LY+DEAFACH+GTLLALIA+VKP+ KVVLCGDPKQCGFFNMM LKV+FNH+I Sbjct 778 GCRRAVDILYVDEAFACHSGTLLALIALVKPRSKVVLCGDPKQCGFFNMMQLKVNFNHNI 837 Query 300 CTEVYHKSISRRCTQTVTAIVSTLFYDKRMKTVNPCADKIIIDTTGTTKPHKDDLILTCF 359 CTEV HKSISRRCT+ VTAIVSTL Y +M+T NPC IIIDTTG TKP D++LTCF Sbjct 838 CTEVCHKSISRRCTRPVTAIVSTLHYGGKMRTTNPCNKPIIIDTTGQTKPKPGDIVLTCF 897 Query 360 RGWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRYKVNENPLYSQTSEHVNVLLTRTEKR 419 RGWVKQLQ+DY+ HE+MTAAASQGLTRKGVYAVR KVNENPLY+ SEHVNVLLTRTE R Sbjct 898 RGWVKQLQLDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYAPASEHVNVLLTRTEDR 957 Query 420 IVWKTLAGDPWIKTLTAKYPGDFTASLDDWQREHDAIMARVLDKPQT-ADVFQNKVNVCW 478 +VWKTLAGDPWIK L+ G+FTA+L++WQ EHD IM +V++ P D FQNK NVCW Sbjct 958 LVWKTLAGDPWIKVLSNIPQGNFTATLEEWQEEHDKIM-KVIEGPAAPVDAFQNKANVCW 1016 Query 479 AKALEPVLATANIVLTRQQWET-LHPFKHDRAYSPEMALNFFCTRFFGVDLDSGLFSAPT 537 AK+L PVL TA I LT ++W T + FK DRAYSP +ALN CT+++GVDLDSGLFSAP Sbjct 1017 AKSLVPVLDTAGIRLTAEEWSTIITAFKEDRAYSPVVALNEICTKYYGVDLDSGLFSAPK 1076 Query 538 VALTYRDQHWDNSPGKNMYGLNREVAKELSRRYPCITKAVDTGRVADIRNNTIKDYSPTI 597 V+L Y + HWDN PG MYG N A L R+ + TG+ A I I+ S Sbjct 1077 VSLYYENNHWDNRPGGRMYGFNAATAARLEARHTFLKGQWHTGKQAVIAERKIQPLSVLD 1136 Query 598 NVVPLNRRLPHSLIVDHKGQGTTDHSGFLSKMKGKSVLVIGD-PISIPGKKVESMGPLP- 655 NV+P+NRRLPH+L+ ++K + ++K++G VL++ + +++P ++V + PL Sbjct 1137 NVIPINRRLPHALVAEYKTVKGSRVEWLVNKVRGYHVLLVSEYNLALPRRRVTWLSPLNV 1196 Query 656 TNTIRC-DLDLGIPSHVGKYDIIFVNVRTPYRNHHYQQCEDHAIHHSMLTCKAVHHLNTG 714 T RC DL LG+P+ G++D++FVN+ T +R HHYQQC DHA+ ML A+ L G Sbjct 1197 TGADRCYDLSLGLPADAGRFDLVFVNIHTEFRIHHYQQCVDHAMKLQMLGGDALRLLKPG 1256 Query 715 GTCVAIGYGLADRATENIITAVARSFRFTRVCQPKNTAENTEVLFVFFGKDNGNHTHDQD 774 G+ + YG AD+ +E ++++++R F RV +P NTEV +F DNG Sbjct 1257 GSLLMRAYGYADKISEAVVSSLSRKFSSARVLRPDCVTSNTEVFLLFSNFDNGKRPSTLH 1316 Query 775 RLGVVLDNIYQGSTRYEAG 793 ++ L +Y G + AG Sbjct 1317 QMNTKLSAVYAGEAMHTAG 1335 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Mayaro virus (strain Brazil)] Sequence ID: Q8QZ73.3 Length: 2437 Range 1: 537 to 1333 Score:944 bits(2439), Expect:0.0, Method:Compositional matrix adjust., Identities:462/799(58%), Positives:582/799(72%), Gaps:8/799(1%) Query 1 GSVETPRGHIRVTSYPGEEKIGSYAILSPQAVLNSEKLACIHPLAEQVLVMTHKGRAGRY 60 G VETPR ++VT + +GSY +LSPQ VL S KL +HPLAE V ++THKGRAGRY Sbjct 537 GVVETPRNALKVTPQDRDTMVGSYLVLSPQTVLKSVKLQALHPLAESVKIITHKGRAGRY 596 Query 61 KVEPYHGKVIVPEGTAVPVQDFQALSESATIVFNEREFVNRYLHHIAINGGALNTDEEYY 120 +V+ Y G+V++P G A+PV DFQALSESAT+V+NEREF+NR L+HIA++G ALNTDEE Y Sbjct 597 QVDAYDGRVLLPTGAAIPVPDFQALSESATMVYNEREFINRKLYHIAVHGAALNTDEEGY 656 Query 121 KTVKTQDTDSEYVFDIDARKCVKREDAGPLCLTGDLVDPPFHEFAYESLKTRPAAPHKVP 180 + V+ + TD+EYV+D+D ++CVKRE+A L + GDL++PPFHEFAYE LK RPAAP+K Sbjct 657 EKVRAESTDAEYVYDVDRKQCVKREEAEGLVMIGDLINPPFHEFAYEGLKRRPAAPYKTT 716 Query 181 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVRRMRRMDVAARTVDSVLLN 240 +GV+GVPGSGKSGIIKS VT+ DLV S KKENC EI+ DV+R R +D+ A+TVDSVLLN Sbjct 717 VVGVFGVPGSGKSGIIKSLVTRGDLVASGKKENCQEIMLDVKRYRDLDMTAKTVDSVLLN 776 Query 241 GVKHPVNTLYIDEAFACHAGTLLALIAIVKP-KKVVLCGDPKQCGFFNMMCLKVHFNHDI 299 GVK V+ LY+DEAFACHAGTLLALIA V+P KKVVLCGDPKQCGFFN+M L+V+FNH+I Sbjct 777 GVKQTVDVLYVDEAFACHAGTLLALIATVRPRKKVVLCGDPKQCGFFNLMQLQVNFNHNI 836 Query 300 CTEVYHKSISRRCTQTVTAIVSTLFYDKRMKTVNPCADKIIIDTTGTTKPHKDDLILTCF 359 CTEV HKSISRRCT +TAIVSTL Y+ RM+T NP +IIDTTG TKP+++D++LTCF Sbjct 837 CTEVDHKSISRRCTLPITAIVSTLHYEGRMRTTNPYNKPVIIDTTGQTKPNREDIVLTCF 896 Query 360 RGWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRYKVNENPLYSQTSEHVNVLLTRTEKR 419 RGWVKQLQ+DY+ HE+MTAAASQGLTRKGVYAVR KVNENPLY+Q+SEHVNVLLTRTE R Sbjct 897 RGWVKQLQLDYRGHEVMTAAASQGLTRKGVYAVRMKVNENPLYAQSSEHVNVLLTRTEGR 956 Query 420 IVWKTLAGDPWIKTLTAKYPGDFTASLDDWQREHDAIMARVLDKPQTADVFQNKVNVCWA 479 +VWKTL+GDPWIKTL+ G+FTA+L+DWQREHD IM + + DVFQNK VCWA Sbjct 957 LVWKTLSGDPWIKTLSNIPKGNFTATLEDWQREHDTIMRAITQEAAPLDVFQNKAKVCWA 1016 Query 480 KALEPVLATANIVLTRQQWET-LHPFKHDRAYSPEMALNFFCTRFFGVDLDSGLFSAPTV 538 K L PVL TA I L+ W + FK DRAYSPE+ALN CT+ +GVDLDSGLFSAP V Sbjct 1017 KCLVPVLETAGIKLSATDWSAIILAFKEDRAYSPEVALNEICTKIYGVDLDSGLFSAPRV 1076 Query 539 ALTYRDQHWDNSPGKNMYGLNREVAKELSRRYPCITKAVDTGRVADIRNNTIKDYSPTIN 598 +L Y HWDNSPG MYG + E A L +++P +G+V T + T N Sbjct 1077 SLHYTTNHWDNSPGGRMYGFSVEAANRLEQQHPFYRGRWASGQVLVAERKT-QPIDVTCN 1135 Query 599 VVPLNRRLPHSLIVDHKGQGTTDHSGFLSKMKGKSVLVIGD-PISIPGKKVESMGPLPTN 657 ++P NRRLPH+L+ ++ ++K+ G VL++ + + +P +KV + P PT Sbjct 1136 LIPFNRRLPHTLVTEYHPIKGERVEWLVNKIPGYHVLLVSEYNLILPRRKVTWIAP-PTV 1194 Query 658 T---IRCDLDLGIPSHVGKYDIIFVNVRTPYRNHHYQQCEDHAIHHSMLTCKAVHHLNTG 714 T + DLDLG+P + G+YD++FVN+ TPYR HHYQQC DHA+ ML A++ L G Sbjct 1195 TGADLTYDLDLGLPPNAGRYDLVFVNMHTPYRLHHYQQCVDHAMKLQMLGGDALYLLKPG 1254 Query 715 GTCVAIGYGLADRATENIITAVARSFRFTRVCQPKNTAENTEVLFVFFGKDNGNHTHDQD 774 G+ + Y ADR +E ++TA+AR F R + NTEV +F DNG T Sbjct 1255 GSLLLSTYAYADRTSEAVVTALARRFSSFRAVTVRCVTSNTEVFLLFTNFDNGRRTVTLH 1314 Query 775 RLGVVLDNIYQGSTRYEAG 793 + L +IY G+ AG Sbjct 1315 QTNGKLSSIYAGTVLQAAG 1333 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Getah virus] Sequence ID: Q5Y389.3 Length: 2467 Range 1: 535 to 1331 Score:943 bits(2437), Expect:0.0, Method:Compositional matrix adjust., Identities:455/797(57%), Positives:572/797(71%), Gaps:4/797(0%) Query 1 GSVETPRGHIRVTSYPGEEKIGSYAILSPQAVLNSEKLACIHPLAEQVLVMTHKGRAGRY 60 G VETPR ++VT + IGSY ILSPQ VL SEKLA IHPLAEQV VMTH GR+GRY Sbjct 535 GVVETPRNALKVTPQAHDHLIGSYLILSPQTVLKSEKLAPIHPLAEQVTVMTHSGRSGRY 594 Query 61 KVEPYHGKVIVPEGTAVPVQDFQALSESATIVFNEREFVNRYLHHIAINGGALNTDEEYY 120 V+ Y G+V++P G A+PV +FQALSESAT+V+NEREF+NR LHHIA+ G ALNTDEE Y Sbjct 595 PVDKYDGRVLIPTGAAIPVSEFQALSESATMVYNEREFINRKLHHIALYGPALNTDEESY 654 Query 121 KTVKTQDTDSEYVFDIDARKCVKREDAGPLCLTGDLVDPPFHEFAYESLKTRPAAPHKVP 180 + V+ + ++EYVFD+D + C+K+E+A L LTGDL++PPFHEFAYE LK RPAAP+ Sbjct 655 EKVRAERAETEYVFDVDKKACIKKEEASGLVLTGDLINPPFHEFAYEGLKIRPAAPYHTT 714 Query 181 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVRRMRRMDVAARTVDSVLLN 240 IGV+GVPGSGKS IIK+ VT +DLV S KKENC EI+ DV+R R +DV ARTVDS+LLN Sbjct 715 IIGVFGVPGSGKSAIIKNMVTTRDLVASGKKENCQEIMNDVKRQRGLDVTARTVDSILLN 774 Query 241 GVKHPVNTLYIDEAFACHAGTLLALIAIVKPK-KVVLCGDPKQCGFFNMMCLKVHFNHDI 299 G K V LY+DEAFACH+GTLLALIA+V+P KVVLCGDPKQCGFFN+M LKVH+NH+I Sbjct 775 GCKKGVENLYVDEAFACHSGTLLALIALVRPSGKVVLCGDPKQCGFFNLMQLKVHYNHNI 834 Query 300 CTEVYHKSISRRCTQTVTAIVSTLFYDKRMKTVNPCADKIIIDTTGTTKPHKDDLILTCF 359 CT V HKSISRRCT VTAIVSTL Y +M+T N C I IDTTG++KP D++LTCF Sbjct 835 CTRVLHKSISRRCTLPVTAIVSTLHYQGKMRTTNRCNTPIQIDTTGSSKPASGDIVLTCF 894 Query 360 RGWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRYKVNENPLYSQTSEHVNVLLTRTEKR 419 RGWVKQLQIDY+ HE+MTAAASQGLTRKGVYAVR KVNENPLYS SEHVNVLLTRTE R Sbjct 895 RGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYSPLSEHVNVLLTRTENR 954 Query 420 IVWKTLAGDPWIKTLTAKYPGDFTASLDDWQREHDAIMARVLDKPQTADVFQNKVNVCWA 479 +VWKTL+GDPWIK LT GDF+A+L++W EHD IM + ++P D FQNK VCWA Sbjct 955 LVWKTLSGDPWIKVLTNVPRGDFSATLEEWHEEHDGIMRVLNERPAEVDPFQNKAKVCWA 1014 Query 480 KALEPVLATANIVLTRQQWETLHPFKHDRAYSPEMALNFFCTRFFGVDLDSGLFSAPTVA 539 K L VL TA I +T +W T+ F+ DRAYSPE+ALN CTR++GVDLDSGLFSA +V+ Sbjct 1015 KCLVQVLETAGIRMTADEWNTILAFREDRAYSPEVALNEICTRYYGVDLDSGLFSAQSVS 1074 Query 540 LTYRDQHWDNSPGKNMYGLNREVAKELSRRYPCITKAVDTGRVADIRNNTIKDYSPTINV 599 L Y + HWDN PG MYG N EVA++ + R+P + +++G ++ ++ +S N+ Sbjct 1075 LFYENNHWDNRPGGRMYGFNHEVARKYAARFPFLRGNMNSGLQLNVPERKLQPFSAECNI 1134 Query 600 VPLNRRLPHSLIVDHKGQGTTDHSGFLSKMKGKSVLVIGD-PISIPGKKVESMGP--LPT 656 VP NRRLPH+L+ ++ L K+ G +L++ + + IP K+V + P + Sbjct 1135 VPSNRRLPHALVTSYQQCRGERVEWLLKKIPGHQMLLVSEYNLVIPHKRVFWIAPPRVSG 1194 Query 657 NTIRCDLDLGIPSHVGKYDIIFVNVRTPYRNHHYQQCEDHAIHHSMLTCKAVHHLNTGGT 716 DLDLG+P G+YD++FVN+ T YR HHYQQC DH++ ML ++H L GG+ Sbjct 1195 ADRTYDLDLGLPMDAGRYDLVFVNIHTEYRQHHYQQCVDHSMRLQMLGGDSLHLLRPGGS 1254 Query 717 CVAIGYGLADRATENIITAVARSFRFTRVCQPKNTAENTEVLFVFFGKDNGNHTHDQDRL 776 + YG ADR +E ++TA+AR F RV +P NTEV +F DNG + Sbjct 1255 LLMRAYGYADRVSEMVVTALARKFSAFRVLRPACVTSNTEVFLLFSNFDNGRRAVTLHQA 1314 Query 777 GVVLDNIYQGSTRYEAG 793 L ++Y + + AG Sbjct 1315 NQKLSSMYACNGLHTAG 1331 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Igbo Ora virus] Sequence ID: O90370.1 Length: 2513 Range 1: 536 to 1326 Score:933 bits(2411), Expect:0.0, Method:Compositional matrix adjust., Identities:441/791(56%), Positives:570/791(72%), Gaps:5/791(0%) Query 1 GSVETPRGHIRVTSYPGEEKIGSYAILSPQAVLNSEKLACIHPLAEQVLVMTHKGRAGRY 60 G VETPRG I+VT+ P + +G Y +L+PQAVL S+KL IH LAEQV TH GRAGRY Sbjct 536 GIVETPRGAIKVTAQPSDLVVGEYLVLTPQAVLRSQKLGLIHALAEQVKTCTHSGRAGRY 595 Query 61 KVEPYHGKVIVPEGTAVPVQDFQALSESATIVFNEREFVNRYLHHIAINGGALNTDEEYY 120 VE Y G+V+VP G A+P +DFQ+LSESAT+VFNEREFVNR LHHIA++G ALNTDEE Y Sbjct 596 AVEAYDGRVLVPSGYAIPQEDFQSLSESATMVFNEREFVNRKLHHIAMHGPALNTDEESY 655 Query 121 KTVKTQDTDSEYVFDIDARKCVKREDAGPLCLTGDLVDPPFHEFAYESLKTRPAAPHKVP 180 + V+ + T+ EYV+D+D +KC KRE+A L L GDL PP+HEFAYE LK RPA P+K Sbjct 656 ELVRVEKTEHEYVYDVDQKKCCKREEATGLVLVGDLTSPPYHEFAYEGLKIRPACPYKTA 715 Query 181 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVRRMRRMDVAARTVDSVLLN 240 IGV+GVPGSGKS IIK+ VT++DLV S KKENC EI DV R R+++++ARTVDS+LLN Sbjct 716 VIGVFGVPGSGKSAIIKNLVTRQDLVTSGKKENCQEISNDVMRQRKLEISARTVDSLLLN 775 Query 241 GVKHPVNTLYIDEAFACHAGTLLALIAIVKPK-KVVLCGDPKQCGFFNMMCLKVHFNHDI 299 G PV LY+DEAFACH+GTLLALIA+V+P+ KVVLCGDPKQCGFFNMM +KV++NH+I Sbjct 776 GCNKPVEVLYVDEAFACHSGTLLALIAMVRPRQKVVLCGDPKQCGFFNMMQMKVNYNHNI 835 Query 300 CTEVYHKSISRRCTQTVTAIVSTLFYDKRMKTVNPCADKIIIDTTGTTKPHKDDLILTCF 359 CT+VYHKSISRRCT VTAIVS+L Y+ +M+T N I++DTTGTTKP DL+LTCF Sbjct 836 CTQVYHKSISRRCTLPVTAIVSSLHYESKMRTTNEYNQPIVVDTTGTTKPEPGDLVLTCF 895 Query 360 RGWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRYKVNENPLYSQTSEHVNVLLTRTEKR 419 RGWVKQLQIDY+ +E+MTAAASQGLTRKGVYAVR KVNENPLY+ TSEHVNVLLTRTE + Sbjct 896 RGWVKQLQIDYRGNEVMTAAASQGLTRKGVYAVRQKVNENPLYASTSEHVNVLLTRTEGK 955 Query 420 IVWKTLAGDPWIKTLTAKYPGDFTASLDDWQREHDAIMARVLDKPQTADVFQNKVNVCWA 479 ++WKTL+GDPWIK L G+F A++ +W+ EH +IMA + + D FQNK NVCWA Sbjct 956 LIWKTLSGDPWIKILQNPPKGNFKATIKEWEAEHASIMAGICNYQMAFDTFQNKANVCWA 1015 Query 480 KALEPVLATANIVLTRQQW-ETLHPFKHDRAYSPEMALNFFCTRFFGVDLDSGLFSAPTV 538 K L P+L TA I L+ +QW + + FK DRAYSPE+ALN CTR +GVDLDSGLFS P + Sbjct 1016 KCLVPILDTAGIKLSDRQWSQIVQAFKEDRAYSPEVALNEICTRIYGVDLDSGLFSKPLI 1075 Query 539 ALTYRDQHWDNSPGKNMYGLNREVAKELSRRYPCITKAVDTGRVADIRNNTIKDYSPTIN 598 ++ Y D HWDN PG M+G N EVA L ++YP + + I + +++P N Sbjct 1076 SVYYADNHWDNRPGGKMFGFNPEVALMLEKKYPFTKGKWNINKQICITTRKVDEFNPETN 1135 Query 599 VVPLNRRLPHSLIVDHKGQGTTDHSGFLSKMKGKSVLVI-GDPISIPGKKVESMGPLPTN 657 ++P NRRLPHSL+ +H ++K+ G +L++ G + +P K+V + PL T Sbjct 1136 IIPANRRLPHSLVAEHHSVRGERMEWLVNKINGHHMLLVSGYNLILPTKRVTWVAPLGTR 1195 Query 658 --TIRCDLDLGIPSHVGKYDIIFVNVRTPYRNHHYQQCEDHAIHHSMLTCKAVHHLNTGG 715 +L+LG+P+ +G+YD++ +N+ TP+R HHYQQC DHA+ ML ++ L GG Sbjct 1196 GADYTYNLELGLPATLGRYDLVVINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKPGG 1255 Query 716 TCVAIGYGLADRATENIITAVARSFRFTRVCQPKNTAENTEVLFVFFGKDNGNHTHDQDR 775 + + YG ADR +E +I+ + R FR +R +P+ NTE+ F+F DNG Sbjct 1256 SLLIRAYGYADRTSERVISVLGRKFRSSRALKPQCITSNTEMFFLFSRFDNGRRNFTTHV 1315 Query 776 LGVVLDNIYQG 786 + L+ +Y G Sbjct 1316 MNNQLNAVYAG 1326 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Chikungunya virus strain S27-African prototype] Sequence ID: Q8JUX6.1 Length: 2474 Range 1: 536 to 1307 Score:932 bits(2410), Expect:0.0, Method:Compositional matrix adjust., Identities:439/772(57%), Positives:566/772(73%), Gaps:5/772(0%) Query 1 GSVETPRGHIRVTSYPGEEKIGSYAILSPQAVLNSEKLACIHPLAEQVLVMTHKGRAGRY 60 G +ETPRG I+VT+ P + +G Y +LSPQ VL S+KL+ IH LAEQV TH GRAGRY Sbjct 536 GIIETPRGAIKVTAQPTDHVVGEYLVLSPQTVLRSQKLSLIHALAEQVKTCTHSGRAGRY 595 Query 61 KVEPYHGKVIVPEGTAVPVQDFQALSESATIVFNEREFVNRYLHHIAINGGALNTDEEYY 120 VE Y G+V+VP G A+ +DFQ+LSESAT+V+NEREFVNR LHHIA++G ALNTDEE Y Sbjct 596 AVEAYDGRVLVPSGYAISPEDFQSLSESATMVYNEREFVNRKLHHIAMHGPALNTDEESY 655 Query 121 KTVKTQDTDSEYVFDIDARKCVKREDAGPLCLTGDLVDPPFHEFAYESLKTRPAAPHKVP 180 + V+ + T+ EYV+D+D R+C K+E+A L L GDL +PP+HEFAYE LK RPA P+K+ Sbjct 656 ELVRAERTEHEYVYDVDQRRCCKKEEAAGLVLVGDLTNPPYHEFAYEGLKIRPACPYKIA 715 Query 181 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVRRMRRMDVAARTVDSVLLN 240 IGV+GVPGSGKS IIK+ VT++DLV S KKENC EI DV R R ++++ARTVDS+LLN Sbjct 716 VIGVFGVPGSGKSAIIKNLVTRQDLVTSGKKENCQEITTDVMRQRGLEISARTVDSLLLN 775 Query 241 GVKHPVNTLYIDEAFACHAGTLLALIAIVKPK-KVVLCGDPKQCGFFNMMCLKVHFNHDI 299 G PV+ LY+DEAFACH+GTLLALIA+V+P+ KVVLCGDPKQCGFFNMM +KV++NH+I Sbjct 776 GCNRPVDVLYVDEAFACHSGTLLALIALVRPRQKVVLCGDPKQCGFFNMMQMKVNYNHNI 835 Query 300 CTEVYHKSISRRCTQTVTAIVSTLFYDKRMKTVNPCADKIIIDTTGTTKPHKDDLILTCF 359 CT+VYHKSISRRCT VTAIVS+L Y+ +M+T N I++DTTG+TKP DL+LTCF Sbjct 836 CTQVYHKSISRRCTLPVTAIVSSLHYEGKMRTTNEYNKPIVVDTTGSTKPDPGDLVLTCF 895 Query 360 RGWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRYKVNENPLYSQTSEHVNVLLTRTEKR 419 RGWVKQLQIDY+ HE+MTAAASQGLTRKGVYAVR KVNENPLY+ TSEHVNVLLTRTE + Sbjct 896 RGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYASTSEHVNVLLTRTEGK 955 Query 420 IVWKTLAGDPWIKTLTAKYPGDFTASLDDWQREHDAIMARVLDKPQTADVFQNKVNVCWA 479 +VWKTL+GDPWIKTL G+F A++ +W+ EH +IMA + T D FQNK NVCWA Sbjct 956 LVWKTLSGDPWIKTLQNPPKGNFKATIKEWEVEHASIMAGICSHQMTFDTFQNKANVCWA 1015 Query 480 KALEPVLATANIVLTRQQW-ETLHPFKHDRAYSPEMALNFFCTRFFGVDLDSGLFSAPTV 538 K+L P+L TA I L +QW + + FK D+AYSPE+ALN CTR +GVDLDSGLFS P V Sbjct 1016 KSLVPILETAGIKLNDRQWSQIIQAFKEDKAYSPEVALNEICTRMYGVDLDSGLFSKPLV 1075 Query 539 ALTYRDQHWDNSPGKNMYGLNREVAKELSRRYPCITKAVDTGRVADIRNNTIKDYSPTIN 598 ++ Y D HWDN PG M+G N E A L R+YP + + + I+D++PT N Sbjct 1076 SVYYADNHWDNRPGGKMFGFNPEAASILERKYPFTKGKWNINKQICVTTRRIEDFNPTTN 1135 Query 599 VVPLNRRLPHSLIVDHKGQGTTDHSGFLSKMKGKSVLVI-GDPISIPGKKVESMGPLPTN 657 ++P NRRLPHSL+ +H+ ++K+ G VL++ G +++P K+V + PL Sbjct 1136 IIPANRRLPHSLVAEHRPVKGERMEWLVNKINGHHVLLVSGCSLALPTKRVTWVAPLGVR 1195 Query 658 --TIRCDLDLGIPSHVGKYDIIFVNVRTPYRNHHYQQCEDHAIHHSMLTCKAVHHLNTGG 715 +L+LG+P+ +G+YD++ +N+ TP+R HHYQQC DHA+ ML ++ L GG Sbjct 1196 GADYTYNLELGLPATLGRYDLVVINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKPGG 1255 Query 716 TCVAIGYGLADRATENIITAVARSFRFTRVCQPKNTAENTEVLFVFFGKDNG 767 + + YG ADR +E +I + R FR +R +P NTE+ F+F DNG Sbjct 1256 SLLIRAYGYADRTSERVICVLGRKFRSSRALKPPCVTSNTEMFFLFSNFDNG 1307 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [O'nyong-nyong virus strain SG650] Sequence ID: O90368.1 Length: 2513 Range 1: 536 to 1326 Score:931 bits(2406), Expect:0.0, Method:Compositional matrix adjust., Identities:440/791(56%), Positives:570/791(72%), Gaps:5/791(0%) Query 1 GSVETPRGHIRVTSYPGEEKIGSYAILSPQAVLNSEKLACIHPLAEQVLVMTHKGRAGRY 60 G VETPRG I+VT+ P + +G Y +L+PQAVL S+KL+ IH LAEQV TH GRAGRY Sbjct 536 GIVETPRGAIKVTAQPSDRVVGEYLVLTPQAVLRSQKLSLIHALAEQVKTCTHSGRAGRY 595 Query 61 KVEPYHGKVIVPEGTAVPVQDFQALSESATIVFNEREFVNRYLHHIAINGGALNTDEEYY 120 VE Y G+V+VP G A+P +DFQ+LSESAT+VFNEREFVNR LHHIA++G ALNTDEE Y Sbjct 596 AVEAYDGRVLVPSGYAIPQEDFQSLSESATMVFNEREFVNRKLHHIAMHGPALNTDEESY 655 Query 121 KTVKTQDTDSEYVFDIDARKCVKREDAGPLCLTGDLVDPPFHEFAYESLKTRPAAPHKVP 180 + V+ + T+ EYV+D+D +KC KRE+A L L GDL PP+HEFAYE LK RPA P+K Sbjct 656 ELVRVEKTEHEYVYDVDQKKCCKREEATGLVLVGDLTSPPYHEFAYEGLKIRPACPYKTA 715 Query 181 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVRRMRRMDVAARTVDSVLLN 240 IGV+GVPGSGKS IIK+ VT++DLV S KKENC EI DV R R+++++ARTVDS+LLN Sbjct 716 VIGVFGVPGSGKSAIIKNLVTRQDLVTSGKKENCQEISNDVMRQRKLEISARTVDSLLLN 775 Query 241 GVKHPVNTLYIDEAFACHAGTLLALIAIVKPK-KVVLCGDPKQCGFFNMMCLKVHFNHDI 299 G PV LY+DEAFACH+GTLLALIA+V+P+ KVVLCGDPKQCGFFNMM +KV++NH+I Sbjct 776 GCNKPVEVLYVDEAFACHSGTLLALIAMVRPRQKVVLCGDPKQCGFFNMMQMKVNYNHNI 835 Query 300 CTEVYHKSISRRCTQTVTAIVSTLFYDKRMKTVNPCADKIIIDTTGTTKPHKDDLILTCF 359 CT+VYHKSISRRCT VTAIVS+L Y+ +M+T N I++DTTG TKP DL+LTCF Sbjct 836 CTQVYHKSISRRCTLPVTAIVSSLHYESKMRTTNEYNQPIVVDTTGITKPEPGDLVLTCF 895 Query 360 RGWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRYKVNENPLYSQTSEHVNVLLTRTEKR 419 RGWVKQLQIDY+ +E+MTAAASQGLTRKGVYAVR KVNENPLY+ TSEHVNVLLTRTE + Sbjct 896 RGWVKQLQIDYRGNEVMTAAASQGLTRKGVYAVRQKVNENPLYASTSEHVNVLLTRTEGK 955 Query 420 IVWKTLAGDPWIKTLTAKYPGDFTASLDDWQREHDAIMARVLDKPQTADVFQNKVNVCWA 479 ++WKTL+GDPWIK L G+F A++ +W+ EH +IMA + + D FQNK NVCWA Sbjct 956 LIWKTLSGDPWIKILQNPPKGNFKATIKEWEAEHASIMAGICNHQMAFDTFQNKANVCWA 1015 Query 480 KALEPVLATANIVLTRQQW-ETLHPFKHDRAYSPEMALNFFCTRFFGVDLDSGLFSAPTV 538 K L P+L TA I L+ +QW + + FK DRAYSPE+ALN CTR +GVDLDSGLFS P + Sbjct 1016 KCLVPILDTAGIKLSDRQWSQIVQAFKEDRAYSPEVALNEICTRIYGVDLDSGLFSKPLI 1075 Query 539 ALTYRDQHWDNSPGKNMYGLNREVAKELSRRYPCITKAVDTGRVADIRNNTIKDYSPTIN 598 ++ Y D HWDN PG M+G N EVA L ++YP + + I + +++P N Sbjct 1076 SVYYADNHWDNRPGGKMFGFNPEVALMLEKKYPFTKGKWNINKQICITTRKVDEFNPETN 1135 Query 599 VVPLNRRLPHSLIVDHKGQGTTDHSGFLSKMKGKSVLVI-GDPISIPGKKVESMGPLPTN 657 ++P NRRLPHSL+ +H ++K+ G +L++ G + +P K+V + PL T Sbjct 1136 IIPANRRLPHSLVAEHHTVRGERMEWLVNKINGHHMLLVSGYNLILPTKRVTWVAPLGTR 1195 Query 658 --TIRCDLDLGIPSHVGKYDIIFVNVRTPYRNHHYQQCEDHAIHHSMLTCKAVHHLNTGG 715 +L+LG+P+ +G+YD++ +N+ TP+R HHYQQC DHA+ ML ++ L GG Sbjct 1196 GADYTYNLELGLPATLGRYDLVVINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKPGG 1255 Query 716 TCVAIGYGLADRATENIITAVARSFRFTRVCQPKNTAENTEVLFVFFGKDNGNHTHDQDR 775 + + YG ADR +E +I+ + R FR +R +P+ NTE+ F+F DNG Sbjct 1256 SLLIRAYGYADRTSERVISVLGRKFRSSRALKPQCITSNTEMFFLFSRFDNGRRNFTTHV 1315 Query 776 LGVVLDNIYQG 786 + L+ +Y G Sbjct 1316 MNNQLNAVYAG 1326 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [O'nyong-nyong virus strain Gulu] Sequence ID: P13886.2 Length: 2514 Range 1: 536 to 1326 Score:931 bits(2405), Expect:0.0, Method:Compositional matrix adjust., Identities:441/791(56%), Positives:569/791(71%), Gaps:5/791(0%) Query 1 GSVETPRGHIRVTSYPGEEKIGSYAILSPQAVLNSEKLACIHPLAEQVLVMTHKGRAGRY 60 G VETPRG I+VT+ P + +G Y +L+PQAVL S+KL+ IH LAEQV TH GRAGRY Sbjct 536 GIVETPRGAIKVTAQPSDLVVGEYLVLTPQAVLRSQKLSLIHALAEQVKTCTHSGRAGRY 595 Query 61 KVEPYHGKVIVPEGTAVPVQDFQALSESATIVFNEREFVNRYLHHIAINGGALNTDEEYY 120 VE Y G+V+VP G A+P +DFQ+LSESAT+VFNEREFVNR LHHIA++G ALNTDEE Y Sbjct 596 AVEAYDGRVLVPSGYAIPQEDFQSLSESATMVFNEREFVNRKLHHIAMHGPALNTDEESY 655 Query 121 KTVKTQDTDSEYVFDIDARKCVKREDAGPLCLTGDLVDPPFHEFAYESLKTRPAAPHKVP 180 + V+ + T+ EYV+D+D +KC KRE+A L L GDL PP+HEFAYE LK RPA P+K Sbjct 656 ELVRVEKTEHEYVYDVDQKKCCKREEATGLVLVGDLTSPPYHEFAYEGLKIRPACPYKTA 715 Query 181 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVRRMRRMDVAARTVDSVLLN 240 IGV+GVPGSGKS IIK+ VT++DLV S KKENC EI DV R R+++++ARTVDS+LLN Sbjct 716 VIGVFGVPGSGKSAIIKNLVTRQDLVTSGKKENCQEISNDVMRQRKLEISARTVDSLLLN 775 Query 241 GVKHPVNTLYIDEAFACHAGTLLALIAIVKPK-KVVLCGDPKQCGFFNMMCLKVHFNHDI 299 G PV LY+DEAFACH+GTLLALIA+V+P+ KVVLCGDPKQCGFFNMM +KV++NH+I Sbjct 776 GCNKPVEVLYVDEAFACHSGTLLALIAMVRPRQKVVLCGDPKQCGFFNMMQMKVNYNHNI 835 Query 300 CTEVYHKSISRRCTQTVTAIVSTLFYDKRMKTVNPCADKIIIDTTGTTKPHKDDLILTCF 359 CT+VYHKSISRRCT VTAIVS+L Y+ +M+T N I++DTTG TKP DL+LTCF Sbjct 836 CTQVYHKSISRRCTLPVTAIVSSLHYESKMRTTNEYNQPIVVDTTGITKPEPGDLVLTCF 895 Query 360 RGWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRYKVNENPLYSQTSEHVNVLLTRTEKR 419 RGWVKQLQIDY+ +E+MTAAASQGLTRKGVYAVR KVNENPLY+ TSEHVNVLLTRTE + Sbjct 896 RGWVKQLQIDYRGNEVMTAAASQGLTRKGVYAVRQKVNENPLYAPTSEHVNVLLTRTEGK 955 Query 420 IVWKTLAGDPWIKTLTAKYPGDFTASLDDWQREHDAIMARVLDKPQTADVFQNKVNVCWA 479 + WKTL+GDPWIK L GDF A++ +W+ EH +IMA + + D FQNK NVCWA Sbjct 956 LTWKTLSGDPWIKILQNPPKGDFKATIKEWEAEHASIMAGICNHQMAFDTFQNKANVCWA 1015 Query 480 KALEPVLATANIVLTRQQW-ETLHPFKHDRAYSPEMALNFFCTRFFGVDLDSGLFSAPTV 538 K L P+L TA I L+ +QW + + FK DRAYSPE+ALN CTR +GVDLDSGLFS P + Sbjct 1016 KCLVPILDTAGIKLSDRQWSQIVQAFKEDRAYSPEVALNEICTRIYGVDLDSGLFSKPLI 1075 Query 539 ALTYRDQHWDNSPGKNMYGLNREVAKELSRRYPCITKAVDTGRVADIRNNTIKDYSPTIN 598 ++ Y D HWDN PG M+G N EVA L ++YP + + I + +++P N Sbjct 1076 SVYYADNHWDNRPGGKMFGFNPEVALMLEKKYPFTKGKWNINKQICITTRKVDEFNPETN 1135 Query 599 VVPLNRRLPHSLIVDHKGQGTTDHSGFLSKMKGKSVLVI-GDPISIPGKKVESMGPLPTN 657 ++P NRRLPHSL+ +H ++K+ G +L++ G + +P K+V + PL T Sbjct 1136 IIPANRRLPHSLVAEHHSVRGERMEWLVNKISGHHMLLVSGHNLILPTKRVTWVAPLGTR 1195 Query 658 --TIRCDLDLGIPSHVGKYDIIFVNVRTPYRNHHYQQCEDHAIHHSMLTCKAVHHLNTGG 715 +L+LG+P+ +G+YD++ +N+ TP+R HHYQQC DHA+ ML ++ L GG Sbjct 1196 GADYTYNLELGLPATLGRYDLVVINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKPGG 1255 Query 716 TCVAIGYGLADRATENIITAVARSFRFTRVCQPKNTAENTEVLFVFFGKDNGNHTHDQDR 775 + + YG ADR +E +I+ + R FR +R +P+ NTE+ F+F DNG Sbjct 1256 SLLIRAYGYADRTSERVISVLGRKFRSSRALKPQCITSNTEMFFLFSRFDNGRRNFTTHV 1315 Query 776 LGVVLDNIYQG 786 + L+ +Y G Sbjct 1316 MNNQLNAVYAG 1326 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Chikungunya virus strain Senegal 37997] Sequence ID: Q5XXP4.1 Length: 2474 Range 1: 536 to 1307 Score:929 bits(2400), Expect:0.0, Method:Compositional matrix adjust., Identities:437/772(57%), Positives:565/772(73%), Gaps:5/772(0%) Query 1 GSVETPRGHIRVTSYPGEEKIGSYAILSPQAVLNSEKLACIHPLAEQVLVMTHKGRAGRY 60 G +ETPRG I+VT+ P + +G Y +LSPQ VL S+KL+ IH LAEQV TH GRAGRY Sbjct 536 GIIETPRGAIKVTAQPTDHVVGEYLVLSPQTVLRSQKLSLIHALAEQVKTCTHSGRAGRY 595 Query 61 KVEPYHGKVIVPEGTAVPVQDFQALSESATIVFNEREFVNRYLHHIAINGGALNTDEEYY 120 VE Y G+++VP G A+ +DFQ+LSESAT+V+NEREFVNR LHHIA++G ALNTDEE Y Sbjct 596 AVEAYDGRILVPSGYAISPEDFQSLSESATMVYNEREFVNRKLHHIALHGPALNTDEESY 655 Query 121 KTVKTQDTDSEYVFDIDARKCVKREDAGPLCLTGDLVDPPFHEFAYESLKTRPAAPHKVP 180 + V+ + T+ EYV+D+D R+C K+E+A L L GDL +PP+HEFAYE L+ RPA P+K Sbjct 656 ELVRAERTEHEYVYDVDQRRCCKKEEAAGLVLVGDLTNPPYHEFAYEGLRIRPACPYKTA 715 Query 181 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVRRMRRMDVAARTVDSVLLN 240 IGV+GVPGSGKS IIK+ VT++DLV S KKENC EI DV R R ++++ARTVDS+LLN Sbjct 716 VIGVFGVPGSGKSAIIKNLVTRQDLVTSGKKENCQEISTDVMRQRNLEISARTVDSLLLN 775 Query 241 GVKHPVNTLYIDEAFACHAGTLLALIAIVKPK-KVVLCGDPKQCGFFNMMCLKVHFNHDI 299 G PV+ LY+DEAFACH+GTLLALIA+V+P+ KVVLCGDPKQCGFFNMM +KV++NH+I Sbjct 776 GCNRPVDVLYVDEAFACHSGTLLALIALVRPRQKVVLCGDPKQCGFFNMMQMKVNYNHNI 835 Query 300 CTEVYHKSISRRCTQTVTAIVSTLFYDKRMKTVNPCADKIIIDTTGTTKPHKDDLILTCF 359 CT+VYHKSISRRCT VTAIVS+L Y+ +M+T N I++DTTG+TKP DL+LTCF Sbjct 836 CTQVYHKSISRRCTLPVTAIVSSLHYEGKMRTTNEYNKPIVVDTTGSTKPDPGDLVLTCF 895 Query 360 RGWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRYKVNENPLYSQTSEHVNVLLTRTEKR 419 RGWVKQLQIDY+ HE+MTAAASQGLTRKGVYAVR KVNENPLY+ TSEHVNVLLTRTE + Sbjct 896 RGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYASTSEHVNVLLTRTEGK 955 Query 420 IVWKTLAGDPWIKTLTAKYPGDFTASLDDWQREHDAIMARVLDKPQTADVFQNKVNVCWA 479 +VWKTL+GDPWIKTL G+F A++ +W+ EH +IMA + + T D FQNK NVCWA Sbjct 956 LVWKTLSGDPWIKTLQNPPKGNFKATIKEWEVEHASIMAGICNHQVTFDTFQNKANVCWA 1015 Query 480 KALEPVLATANIVLTRQQW-ETLHPFKHDRAYSPEMALNFFCTRFFGVDLDSGLFSAPTV 538 K+L P+L TA I L +QW + + FK DRAYSPE+ALN CTR +GVDLDSGLFS P V Sbjct 1016 KSLVPILETAGIKLNDRQWSQIIQAFKEDRAYSPEVALNEICTRMYGVDLDSGLFSKPLV 1075 Query 539 ALTYRDQHWDNSPGKNMYGLNREVAKELSRRYPCITKAVDTGRVADIRNNTIKDYSPTIN 598 ++ Y D HWDN PG M+G N E A L R+YP +T + + I+D++P N Sbjct 1076 SVHYADNHWDNRPGGKMFGFNPEAASILERKYPFTKGKWNTNKQICVTTRRIEDFNPNTN 1135 Query 599 VVPLNRRLPHSLIVDHKGQGTTDHSGFLSKMKGKSVLVI-GDPISIPGKKVESMGPLPTN 657 ++P NRRLPHSL+ +H+ ++K+ G VL++ G + +P K+V + PL Sbjct 1136 IIPANRRLPHSLVAEHRPVKGERMEWLVNKINGHHVLLVSGYNLVLPTKRVTWVAPLGIR 1195 Query 658 --TIRCDLDLGIPSHVGKYDIIFVNVRTPYRNHHYQQCEDHAIHHSMLTCKAVHHLNTGG 715 +L+LG+P+ +G+YD++ +N+ TP+R HHYQQC DHA+ ML ++ L GG Sbjct 1196 GADYTYNLELGLPATLGRYDLVIINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKPGG 1255 Query 716 TCVAIGYGLADRATENIITAVARSFRFTRVCQPKNTAENTEVLFVFFGKDNG 767 + + YG ADR +E ++ + R FR +R +P NTE+ F+F DNG Sbjct 1256 SLLIRAYGYADRTSERVVCVLGRKFRSSRALKPPCVTSNTEMFFLFSNFDNG 1307 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Barmah Forest virus] Sequence ID: P87515.3 Length: 2411 Range 1: 534 to 1305 Score:919 bits(2375), Expect:0.0, Method:Compositional matrix adjust., Identities:447/772(58%), Positives:559/772(72%), Gaps:5/772(0%) Query 1 GSVETPRGHIRVTSYPGEEKIGSYAILSPQAVLNSEKLACIHPLAEQVLVMTHKGRAGRY 60 G VETPR I+V++ G+ IGSY ILSPQAVL SEKLACIH LAEQV ++TH GR+GRY Sbjct 534 GVVETPRNSIKVSTQIGDALIGSYLILSPQAVLRSEKLACIHDLAEQVKLVTHSGRSGRY 593 Query 61 KVEPYHGKVIVPEGTAVPVQDFQALSESATIVFNEREFVNRYLHHIAINGGALNTDEEYY 120 V+ Y G+V+VP G A+ +Q FQALSESAT+V+NEREFVNR L HIA+ G ALNTDEE Y Sbjct 594 AVDKYXGRVLVPTGVAIDIQSFQALSESATLVYNEREFVNRKLWHIAVYGAALNTDEEGY 653 Query 121 KTVKTQDTDSEYVFDIDARKCVKREDAGPLCLTGDLVDPPFHEFAYESLKTRPAAPHKVP 180 + V + +S+YVFD+D + C+K+E A L G+LV+PPFHEFAYE L+TRP+AP+KV Sbjct 654 EKVPVERAESDYVFDVDQKMCLKKEQASGWVLCGELVNPPFHEFAYEGLRTRPSAPYKVH 713 Query 181 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVRRMRRMDVAARTVDSVLLN 240 T+GVYGVPGSGKS IIK+ VT DLV+S KKENC EI+ DV + R + + A+TVDSVLLN Sbjct 714 TVGVYGVPGSGKSAIIKNTVTMSDLVLSGKKENCLEIMNDVLKHRALRITAKTVDSVLLN 773 Query 241 GVKHPVNTLYIDEAFACHAGTLLALIAIVKPK-KVVLCGDPKQCGFFNMMCLKVHFNHDI 299 GVKH N LYIDEAF+CHAGTLLA IAIV+PK KVVLCGDPKQCGFFNMM LKV++NHDI Sbjct 774 GVKHTPNILYIDEAFSCHAGTLLATIAIVRPKQKVVLCGDPKQCGFFNMMQLKVNYNHDI 833 Query 300 CTEVYHKSISRRCTQTVTAIVSTLFYDKRMKTVNPCADKIIIDTTGTTKPHKDDLILTCF 359 C+EV+HKSISRRCTQ +TAIVS L Y RM+T NP IIIDTTGTTKP K DLILTCF Sbjct 834 CSEVFHKSISRRCTQDITAIVSKLHYQDRMRTTNPRKGDIIIDTTGTTKPAKTDLILTCF 893 Query 360 RGWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRYKVNENPLYSQTSEHVNVLLTRTEKR 419 RGWVKQLQ DY+ +E+MTAAASQGLTR VYAVR KVNENPLY+QTSEHVNVLLTRTE + Sbjct 894 RGWVKQLQQDYRGNEVMTAAASQGLTRASVYAVRTKVNENPLYAQTSEHVNVLLTRTENK 953 Query 420 IVWKTLAGDPWIKTLTAKYPGDFTASLDDWQREHDAIMARVLDKPQTADVFQNKVNVCWA 479 +VWKTL+ DPWIKTLT G +TA++ +W+ EH IM + + F NKVNVCWA Sbjct 954 LVWKTLSTDPWIKTLTNPPRGHYTATIAEWEAEHQGIMKAIQGYAPPVNTFMNKVNVCWA 1013 Query 480 KALEPVLATANIVLTRQQW-ETLHPFKHDRAYSPEMALNFFCTRFFGVDLDSGLFSAPTV 538 K L PVL TA I L+ + W E L PF D AYSPE+ALN CT+ +G DLD+GLFS P+V Sbjct 1014 KTLTPVLETAGISLSAEDWSELLPPFAQDVAYSPEVALNIICTKMYGFDLDTGLFSRPSV 1073 Query 539 ALTYRDQHWDNSPGKNMYGLNREVAKELSRRYPCITKAVDTGRVADIRNNTIKDYSPTIN 598 +TY HWDN G MYG +++ +L+RR+P + +G + I+ N Sbjct 1074 PMTYTKDHWDNRVGGKMYGFSQQAYDQLARRHPYLRGREKSGMQIVVTEMRIQRPRSDAN 1133 Query 599 VVPLNRRLPHSLIVDHKGQGTTDHSGFLSKMKGKSVLVIGD-PISIPGKKVESMGPLPTN 657 ++P+NRRLPHSL+ H+ + F + +G ++L++ + +++P KK+ + P+ T Sbjct 1134 IIPINRRLPHSLVATHEYRRAARAEEFFTTTRGYTMLLVSEYNMNLPNKKITWLAPIGTQ 1193 Query 658 TIR--CDLDLGIPSHVGKYDIIFVNVRTPYRNHHYQQCEDHAIHHSMLTCKAVHHLNTGG 715 +L+LGIP +G +D + VN+ TP+RNHHYQQCEDHA+ ML A+ H+ GG Sbjct 1194 GAHHTANLNLGIPPLLGSFDAVVVNMPTPFRNHHYQQCEDHAMKLQMLAGDALRHIKPGG 1253 Query 716 TCVAIGYGLADRATENIITAVARSFRFTRVCQPKNTAENTEVLFVFFGKDNG 767 + YG ADR +E+++ A+AR F+ RV QP NTEV F DNG Sbjct 1254 SLWVKAYGYADRHSEHVVLALARKFKSFRVTQPSCVTSNTEVFLHFSIFDNG 1305 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Ockelbo virus] Sequence ID: P27283.2 Length: 2515 Range 1: 543 to 1341 Score:879 bits(2272), Expect:0.0, Method:Compositional matrix adjust., Identities:442/801(55%), Positives:553/801(69%), Gaps:18/801(2%) Query 3 VETPRGHIRVTSYPGEEKIGSYAILSPQAVLNSEKLACIHPLAEQVLVMTHKGRAGRYKV 62 VETPRGH+R+ + IG Y ++SP +VL + KLA HPLA+QV ++TH GRAGRY V Sbjct 543 VETPRGHVRIIPQANDRMIGQYIVVSPTSVLKNAKLAPAHPLADQVKIITHSGRAGRYAV 602 Query 63 EPYHGKVIVPEGTAVPVQDFQALSESATIVFNEREFVNRYLHHIAINGGALNTDEEYYKT 122 EPY KV++P G+AVP +F ALSESAT+V+NEREFVNR L+HIA++G A NT+EE YK Sbjct 603 EPYDAKVLMPAGSAVPWPEFLALSESATLVYNEREFVNRKLYHIAMHGPAKNTEEEQYKV 662 Query 123 VKTQDTDSEYVFDIDARKCVKREDAGPLCLTGDLVDPPFHEFAYESLKTRPAAPHKVPTI 182 K + ++EYVFD+D ++CVK+E+A L L+G+L +PP+HE A E LKTRPA P+KV TI Sbjct 663 TKAELAETEYVFDVDKKRCVKKEEASGLVLSGELTNPPYHELALEGLKTRPAVPYKVETI 722 Query 183 GVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVRRMRRMDVAARTVDSVLLNGV 242 GV G PGSGKS IIKS VT +DLV S KKENC EI DV R+R M + ++TVDSV+LNG Sbjct 723 GVIGTPGSGKSAIIKSTVTARDLVTSGKKENCREIEADVLRLRGMQITSKTVDSVMLNGC 782 Query 243 KHPVNTLYIDEAFACHAGTLLALIAIVKP-KKVVLCGDPKQCGFFNMMCLKVHFNH---D 298 V LY+DEAFACHAG LLALIAIV+P KKVVLCGDPKQCGFFNMM LKVHFNH D Sbjct 783 HKAVEVLYVDEAFACHAGALLALIAIVRPRKKVVLCGDPKQCGFFNMMQLKVHFNHPERD 842 Query 299 ICTEVYHKSISRRCTQTVTAIVSTLFYDKRMKTVNPCADKIIIDTTGTTKPHKDDLILTC 358 ICT+ ++K ISRRCTQ VTAIVSTL YD +MKT NPC I ID TG TKP D+ILTC Sbjct 843 ICTKTFYKFISRRCTQPVTAIVSTLHYDGKMKTTNPCKKNIEIDITGATKPKPGDIILTC 902 Query 359 FRGWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRYKVNENPLYSQTSEHVNVLLTRTEK 418 FRGWVKQLQIDY HE+MTAAASQGLTRKGVYAVR KVNEN LY+ TSEHVNVLLTRTE Sbjct 903 FRGWVKQLQIDYPGHEVMTAAASQGLTRKGVYAVRQKVNENALYAITSEHVNVLLTRTED 962 Query 419 RIVWKTLAGDPWIKTLTAKYPGDFTASLDDWQREHDAIMARVLDKPQTADVFQNKVNVCW 478 R+VWKTL GDPWIK LT G+F A+++DW+ EH I+A + + F K NVCW Sbjct 963 RLVWKTLQGDPWIKQLTNVPKGNFQATIEDWEAEHKGIIAAINSPAPRTNPFSCKTNVCW 1022 Query 479 AKALEPVLATANIVLTRQQWETLHP-FKHDRAYSPEMALNFFCTRFFGVDLDSGLFSAPT 537 AKALEP+LATA IVLT QW L P F D+ +S AL+ C +FFG+DL SGLFS + Sbjct 1023 AKALEPILATAGIVLTGCQWSELFPQFADDKPHSAIYALDVICIKFFGMDLTSGLFSKQS 1082 Query 538 VALTYRD-------QHWDNSPGKNMYGLNREVAKELSRRYPCITKAVDTGRVADIRNNTI 590 + LTY HWDNSPG YG + VA ELSRR+P + + G D++ Sbjct 1083 IPLTYHPADSARPVAHWDNSPGTRKYGYDHAVAAELSRRFP-VFQLAGKGTQLDLQTGRT 1141 Query 591 KDYSPTINVVPLNRRLPHSLIVDHKGQGTTDHSGFLSKMKGKSVLVIGDP-ISIPGKKVE 649 + S N+VP+NR LPH+L+ +HK + FL++ K SVLV+ + I P K++E Sbjct 1142 RVISAQHNLVPVNRNLPHALVPEHKEKQPGPVEKFLNQFKHHSVLVVSEEKIEAPHKRIE 1201 Query 650 SMGPLPTNTI--RCDLDLGIPSHVGKYDIIFVNVRTPYRNHHYQQCEDHAIHHSMLTCKA 707 + P+ +L G P +YD++F+N+ T YRNHH+QQCEDHA L+ A Sbjct 1202 WIAPIGIAGADKNYNLAFGFPPQ-ARYDLVFINIGTKYRNHHFQQCEDHAATLKTLSRSA 1260 Query 708 VHHLNTGGTCVAIGYGLADRATENIITAVARSFRFTRVCQPKNTAENTEVLFVFFGKDNG 767 ++ LN GGT V YG ADR +E+++TA+AR F +P+ + NTE+ +F DN Sbjct 1261 LNCLNPGGTLVVKSYGYADRNSEDVVTALARKFVRVSAARPECVSSNTEMYLIFRQLDNS 1320 Query 768 -NHTHDQDRLGVVLDNIYQGS 787 L V+ ++Y+G+ Sbjct 1321 RTRQFTPHHLNCVISSVYEGT 1341 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; AltName: Full=p270 nonstructural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Sindbis virus] Sequence ID: P03317.2 Length: 2513 Range 1: 543 to 1341 Score:873 bits(2255), Expect:0.0, Method:Compositional matrix adjust., Identities:439/801(55%), Positives:551/801(68%), Gaps:18/801(2%) Query 3 VETPRGHIRVTSYPGEEKIGSYAILSPQAVLNSEKLACIHPLAEQVLVMTHKGRAGRYKV 62 VETPRGH+R+ + IG Y ++SP +VL + KLA HPLA+QV ++TH GR+GRY V Sbjct 543 VETPRGHVRIIPQANDRMIGQYIVVSPNSVLKNAKLAPAHPLADQVKIITHSGRSGRYAV 602 Query 63 EPYHGKVIVPEGTAVPVQDFQALSESATIVFNEREFVNRYLHHIAINGGALNTDEEYYKT 122 EPY KV++P G AVP +F ALSESAT+V+NEREFVNR L+HIA++G A NT+EE YK Sbjct 603 EPYDAKVLMPAGGAVPWPEFLALSESATLVYNEREFVNRKLYHIAMHGPAKNTEEEQYKV 662 Query 123 VKTQDTDSEYVFDIDARKCVKREDAGPLCLTGDLVDPPFHEFAYESLKTRPAAPHKVPTI 182 K + ++EYVFD+D ++CVK+E+A L L+G+L +PP+HE A E LKTRPA P+KV TI Sbjct 663 TKAELAETEYVFDVDKKRCVKKEEASGLVLSGELTNPPYHELALEGLKTRPAVPYKVETI 722 Query 183 GVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVRRMRRMDVAARTVDSVLLNGV 242 GV G PGSGKS IIKS VT +DLV S KKENC EI DV R+R M + ++TVDSV+LNG Sbjct 723 GVIGTPGSGKSAIIKSTVTARDLVTSGKKENCREIEADVLRLRGMQITSKTVDSVMLNGC 782 Query 243 KHPVNTLYIDEAFACHAGTLLALIAIVKP-KKVVLCGDPKQCGFFNMMCLKVHFNH---D 298 V LY+DEAFACHAG LLALIAIV+P KKVVLCGDP QCGFFNMM LKVHFNH D Sbjct 783 HKAVEVLYVDEAFACHAGALLALIAIVRPRKKVVLCGDPMQCGFFNMMQLKVHFNHPEKD 842 Query 299 ICTEVYHKSISRRCTQTVTAIVSTLFYDKRMKTVNPCADKIIIDTTGTTKPHKDDLILTC 358 ICT+ ++K ISRRCTQ VTAIVSTL YD +MKT NPC I ID TG TKP D+ILTC Sbjct 843 ICTKTFYKYISRRCTQPVTAIVSTLHYDGKMKTTNPCKKNIEIDITGATKPKPGDIILTC 902 Query 359 FRGWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRYKVNENPLYSQTSEHVNVLLTRTEK 418 FRGWVKQLQIDY HE+MTAAASQGLTRKGVYAVR KVNENPLY+ TSEHVNVLLTRTE Sbjct 903 FRGWVKQLQIDYPGHEVMTAAASQGLTRKGVYAVRQKVNENPLYAITSEHVNVLLTRTED 962 Query 419 RIVWKTLAGDPWIKTLTAKYPGDFTASLDDWQREHDAIMARVLDKPQTADVFQNKVNVCW 478 R+VWKTL GDPWIK T G+F A+++DW+ EH I+A + A+ F K NVCW Sbjct 963 RLVWKTLQGDPWIKQPTNIPKGNFQATIEDWEAEHKGIIAAINSPTPRANPFSCKTNVCW 1022 Query 479 AKALEPVLATANIVLTRQQWETLHP-FKHDRAYSPEMALNFFCTRFFGVDLDSGLFSAPT 537 AKALEP+LATA IVLT QW L P F D+ +S AL+ C +FFG+DL SGLFS + Sbjct 1023 AKALEPILATAGIVLTGCQWSELFPQFADDKPHSAIYALDVICIKFFGMDLTSGLFSKQS 1082 Query 538 VALTYRD-------QHWDNSPGKNMYGLNREVAKELSRRYPCITKAVDTGRVADIRNNTI 590 + LTY HWDNSPG YG + +A ELSRR+P + + G D++ Sbjct 1083 IPLTYHPADSARPVAHWDNSPGTRKYGYDHAIAAELSRRFP-VFQLAGKGTQLDLQTGRT 1141 Query 591 KDYSPTINVVPLNRRLPHSLIVDHKGQGTTDHSGFLSKMKGKSVLVIGDP-ISIPGKKVE 649 + S N+VP+NR LPH+L+ ++K + FL++ K SVLV+ + I P K++E Sbjct 1142 RVISAQHNLVPVNRNLPHALVPEYKEKQPGPVKKFLNQFKHHSVLVVSEEKIEAPRKRIE 1201 Query 650 SMGPLPTNTI--RCDLDLGIPSHVGKYDIIFVNVRTPYRNHHYQQCEDHAIHHSMLTCKA 707 + P+ +L G P +YD++F+N+ T YRNHH+QQCEDHA L+ A Sbjct 1202 WIAPIGIAGADKNYNLAFGFPPQ-ARYDLVFINIGTKYRNHHFQQCEDHAATLKTLSRSA 1260 Query 708 VHHLNTGGTCVAIGYGLADRATENIITAVARSFRFTRVCQPKNTAENTEVLFVFFGKDNG 767 ++ LN GGT V YG ADR +E+++TA+AR F +P + NTE+ +F DN Sbjct 1261 LNCLNPGGTLVVKSYGYADRNSEDVVTALARKFVRVSAARPDCVSSNTEMYLIFRQLDNS 1320 Query 768 -NHTHDQDRLGVVLDNIYQGS 787 L V+ ++Y+G+ Sbjct 1321 RTRQFTPHHLNCVISSVYEGT 1341 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Aura virus] Sequence ID: Q86924.3 Length: 2499 Range 1: 542 to 1336 Score:817 bits(2111), Expect:0.0, Method:Compositional matrix adjust., Identities:424/798(53%), Positives:533/798(66%), Gaps:19/798(2%) Query 3 VETPRGHIRVTSYPGEEKIGSYAILSPQAVLNSEKLACIHPLAEQVLVMTHKGRAGRYKV 62 VETPRG I++ G+ +IGSY ++SP AVL +++L IH LAEQV ++TH GR GRY V Sbjct 542 VETPRGKIKIIPQEGDVRIGSYTVISPAAVLRNQQLEPIHELAEQVKIITHGGRTGRYSV 601 Query 63 EPYHGKVIVPEGTAVPVQDFQALSESATIVFNEREFVNRYLHHIAINGGALNTDEEYYKT 122 EPY KV++P G + Q F ALSESAT+V+NEREF+NR LHHIA G A NT+EE YK Sbjct 602 EPYDAKVLLPTGCPMSWQHFAALSESATLVYNEREFLNRKLHHIATKGAAKNTEEEQYKV 661 Query 123 VKTQDTDSEYVFDIDARKCVKREDAGPLCLTGDLVDPPFHEFAYESLKTRPAAPHKVPTI 182 K +DTD EYV+D+DARKCVKRE A L L G+L +PP+HE AYE L+TRPAAP+ + T+ Sbjct 662 CKAKDTDHEYVYDVDARKCVKREHAQGLVLVGELTNPPYHELAYEGLRTRPAAPYHIETL 721 Query 183 GVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVRRMRRMDVAARTVDSVLLNGV 242 GV G PGSGKS IIKS VT KDLV S KKENC EI DV++MR M +A RTVDSVLLNG Sbjct 722 GVIGTPGSGKSAIIKSTVTLKDLVTSGKKENCKEIENDVQKMRGMTIATRTVDSVLLNGW 781 Query 243 KHPVNTLYIDEAFACHAGTLLALIAIVKP-KKVVLCGDPKQCGFFNMMCLKVHFNH---D 298 K V+ LY+DEAFACHAGTL+ALIAIVKP +KVVLCGDPKQ FFN+M LKV+FN+ D Sbjct 782 KKAVDVLYVDEAFACHAGTLMALIAIVKPRRKVVLCGDPKQWPFFNLMQLKVNFNNPERD 841 Query 299 ICTEVYHKSISRRCTQTVTAIVSTLFYDKRMKTVNPCADKIIIDTTGTTKPHKDDLILTC 358 +CT ++K ISRRCTQ VTAIVSTL YD +M+T NPC I ID G+TKP K D++LTC Sbjct 842 LCTSTHYKYISRRCTQPVTAIVSTLHYDGKMRTTNPCKRAIEIDVNGSTKPKKGDIVLTC 901 Query 359 FRGWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRYKVNENPLYSQTSEHVNVLLTRTEK 418 FRGWVKQ QIDY AASQGLTR+GVYAVR KVNENPLY++ SEHVNVLLTRTE Sbjct 902 FRGWVKQGQIDYPGPGGHDRAASQGLTRRGVYAVRQKVNENPLYAEKSEHVNVLLTRTED 961 Query 419 RIVWKTLAGDPWIKTLTAKYPGDFTASLDDWQREHDAIMARVLDKPQTADVFQNKVNVCW 478 RIVWKTL GDPWIK LT G+FTA+L++WQ EH+ IM + +D F +KVN CW Sbjct 962 RIVWKTLQGDPWIKYLTNVPKGNFTATLEEWQAEHEDIMKAINSTSTVSDPFASKVNTCW 1021 Query 479 AKALEPVLATANIVLTRQQWETLHP-FKHDRAYSPEMALNFFCTRFFGVDLDSGLFSAPT 537 AKA+ P+L TA I LT +QWE L P F++D+ YS AL+ CT+ FG+DL SG+FS P Sbjct 1022 AKAIIPILRTAGIELTFEQWEDLFPQFRNDQPYSVMYALDVICTKMFGMDLSSGIFSRPE 1081 Query 538 VALTYRD-------QHWDNSPGKNMYGLNREVAKELSRRYPCITKAVDTGRVADIRNNTI 590 + LT+ HWDNSPG +G N+ V ++YP +A ++ I + Sbjct 1082 IPLTFHPADVGRVRAHWDNSPGGQKFGYNKAVIPT-CKKYPVYLRAGKGDQILPIYGR-V 1139 Query 591 KDYSPTINVVPLNRRLPHSLIVDHKGQGTTDHSGFLSKMKGKSVLVIG-DPISIPGKKVE 649 S N+VPLNR LPHSL + + FL+++ G S+L++ + K++ Sbjct 1140 SVPSARNNLVPLNRNLPHSLTASLQKKEAAPLHKFLNQLPGHSMLLVSKETCYCVSKRIT 1199 Query 650 SMGPLPTNTI--RCDLDLGIPSHVGKYDIIFVNVRTPYRNHHYQQCEDHAIHHSMLTCKA 707 + PL DL G P + +YD++ VN+ PYR HHYQQCE+HA L A Sbjct 1200 WVAPLGVRGADHNHDLHFGFPP-LSRYDLVVVNMGQPYRFHHYQQCEEHAGLMRTLARSA 1258 Query 708 VHHLNTGGTCVAIGYGLADRATENIITAVARSFRFTRVCQPKNTAENTEVLFVFFGKDNG 767 ++ L GGT YG AD +E+++ ++AR F +P T NTE+ FVF DN Sbjct 1259 LNCLKPGGTLALKAYGFADSNSEDVVLSLARKFVRASAVRPSCTQFNTEMFFVFRQLDND 1318 Query 768 NHTH-DQDRLGVVLDNIY 784 Q L + + NI+ Sbjct 1319 RERQFTQHHLNLAVSNIF 1336 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Salmon pancreas disease virus] Sequence ID: Q8JJX1.1 Length: 2601 Range 1: 567 to 1390 Score:619 bits(1596), Expect:0.0, Method:Compositional matrix adjust., Identities:345/826(42%), Positives:477/826(57%), Gaps:46/826(5%) Query 3 VETPRGHIRVTSYPGEEKIGSYAILSPQAVLNSEKLA-CIHPLAEQVLVMTHKGRAGRYK 61 ++ RG ++V + G+ +G Y +LSP VL + KLA + PLAE+V+ HKGR GRY Sbjct 567 IDCQRGTVKVITAFGDNMMGEYLVLSPVTVLRTRKLAILLGPLAEEVMQYVHKGRTGRYA 626 Query 62 VEPYHGKVIVPEGTAVPVQDFQALSESATIVFNEREFVNRYLHHIAINGGALNTDEEYYK 121 +E + KV++P G ++ FQAL+ESAT+ +N+ F R L +A G A NTDE YYK Sbjct 627 IEKNNLKVLIPTGVSLKTDHFQALAESATLTYNDYLFTCRTLDQLATRGSARNTDEVYYK 686 Query 122 TVKTQDTDSEYVFDIDARKCVKREDAGPLCLTGDLVDPPFHEFAYESLKTRPAAPHKVPT 181 V EYV+++ +++CVK+EDA L GD+ +PP+H+FAYE+L+ RPA H V T Sbjct 687 LVDAAKARDEYVYELSSKQCVKKEDATGTVLQGDICNPPYHQFAYEALRKRPAHTHDVHT 746 Query 182 IGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVRRMRRMDVAARTVDSVLLNG 241 IG+YGVPG+GK+ II + VT +DLV S KKENC +I R V R + +AARTVDS+ Sbjct 747 IGIYGVPGAGKTAIITTEVTTRDLVASGKKENCEDIKRCVLERRGLKIAARTVDSLFYGA 806 Query 242 VKHPVNTLYIDEAFACHAGTLLALIAIVKPK-KVVLCGDPKQCGFFNMMCLKVHFNHDIC 300 + VNTLY+DEA+ACH+GTLLALIA V+P KVVLCGDPKQ G N + +++H+NH+I Sbjct 807 YRGAVNTLYVDEAYACHSGTLLALIAAVRPTGKVVLCGDPKQVGCVNQLQMRMHYNHEIS 866 Query 301 TEVYHKSISRRCTQTVTAIVSTLFYDKRMKTVNPCADKIIIDTTGTTKPHKDDLILTCFR 360 V K+ISRRCT T+TAIVS L Y+ RMKT NPC ++IDTTG+TKP K+ L+LTCFR Sbjct 867 DRVLRKNISRRCTHTLTAIVSNLNYEGRMKTTNPCKKPVLIDTTGSTKPDKEALVLTCFR 926 Query 361 GWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRYKVNENPLYSQTSEHVNVLLTRTEKRI 420 GWVK L+ Y ++E+MTAAASQGLTR+ VYAVR +V NPLY TSEH+ VLLTRT + Sbjct 927 GWVKDLKFLYPHNELMTAAASQGLTREKVYAVRCRVTTNPLYEPTSEHITVLLTRTNDEL 986 Query 421 VWKTLAGDPWIKTLTAKYPGDFTASLDDWQREHDAIMARVLDK--PQTADVFQNKVNVCW 478 VWKTL DP I L+ GD++A+++DW+ EH+ I+A + + P+ + K N CW Sbjct 987 VWKTLPNDPLIPILSKPPKGDYSATMEDWEDEHNGILAALREACVPRM-NFAHGKRNTCW 1045 Query 479 AKALEPVLATANIVLTRQQWETLHP-FKHDRAYSPEMALNFFCTRFFGVDLDSGLFSAPT 537 A VL A + +T + + + P F+ D+ +S AL+ T +G+D SG+ S Sbjct 1046 AVTSSRVLHEAGVQITPEDYNRIFPAFREDKPHSALAALDAVATLVWGLDTSSGILSGKG 1105 Query 538 VALTYRDQHWDNSPGKNMYGLNREVAKELSRRYPCITKAVDTGR---VADIRNNTIKDYS 594 + + HW NS YGLN + + P + KA+ R DI + Sbjct 1106 SFMRLENSHWSNSNRGYEYGLNLDALEGYEIANPRMIKALKQRRGRECYDIETGKLVPLD 1165 Query 595 PTINVVPLNRRLPHSLI----------------VDH-------KGQGTTDHSGFLSKMKG 631 P VP+NR +PH L+ VD K + + ++ Sbjct 1166 PARVQVPINRIVPHVLVDTSAAAKPGFLENRLTVDRWDQVHSFKTRAAVKFAELTKRVSY 1225 Query 632 KSVLVIG-------DPISIPGKKVESMGPL----PTNTIRCDLDLGIP-SHVGKYDIIFV 679 SVL +G D GK V S+ P + D+ P +++G +D++F Sbjct 1226 NSVLDLGAAPGGVTDYCVKKGKTVTSVSEQWDTKPRGAVVVTADINGPLNNLGIFDLVFC 1285 Query 680 NVRTPYRNHHYQQCEDHAIHHSMLTCKAVHHLNTGGTCVAIGYGLADRATENIITAVARS 739 + P R HHY QCEDHA+ + V GG + YG+ADR TE + AR Sbjct 1286 DAAGPRRYHHYAQCEDHAVLFTSACKHGVERTAKGGVFIVKAYGMADRRTERAVEGTARY 1345 Query 740 FRFTRVCQPKNT-AENTEVLFVFFGKDNGNHTHDQDRLGVVLDNIY 784 FR V +P ++ N EV F F G+ H LG L +IY Sbjct 1346 FRSVSVEKPVSSRITNVEVFFKFSGRCR-PHARSIAHLGPQLTDIY 1390 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Sleeping disease virus] Sequence ID: Q8QL53.1 Length: 2593 Range 1: 566 to 1389 Score:610 bits(1573), Expect:0.0, Method:Compositional matrix adjust., Identities:346/827(42%), Positives:479/827(57%), Gaps:48/827(5%) Query 3 VETPRGHIRVTSYPGEEKIGSYAILSPQAVLNSEKLACI-HPLAEQVLVMTHKGRAGRYK 61 ++ RG ++V + G+ +G Y +LSP VL + KLA + PLAE+V+ HKGR GRY Sbjct 566 IDCQRGTVKVITAFGDNTMGEYLVLSPVTVLRTRKLAVLLGPLAEEVMQYVHKGRTGRYA 625 Query 62 VEPYHGKVIVPEGTAVPVQDFQALSESATIVFNEREFVNRYLHHIAINGGALNTDEEYYK 121 +E + KV++P G ++ FQAL+ESAT+ +N+ F R L +A G A NTDE YYK Sbjct 626 IEKNNLKVLIPTGVSLKTAHFQALTESATLTYNDYLFTCRTLDQLATRGSAKNTDEVYYK 685 Query 122 TVKTQDTDSEYVFDIDARKCVKREDAGPLCLTGDLVDPPFHEFAYESLKTRPAAPHKVPT 181 V EYV+++ +++CVK+EDA L GD+ +PP+H+FA+E+L+ RPA H V T Sbjct 686 LVDAAKAKDEYVYELSSKQCVKKEDATGTVLQGDICNPPYHQFAFEALRKRPAHTHDVHT 745 Query 182 IGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVRRMRRMDVAARTVDSVLLNG 241 IG+YGVPG+GK+ II + VT +DLV S KKENC +I R V R + +AARTVDS+L Sbjct 746 IGIYGVPGAGKTAIITTEVTTRDLVASGKKENCEDIKRCVLERRGLKIAARTVDSLLYGA 805 Query 242 VKHPVNTLYIDEAFACHAGTLLALIAIVKPK-KVVLCGDPKQCGFFNMMCLKVHFNHDIC 300 + V+TLY+DEA+ACH+GTLLALIA V+P KVVLCGDPKQ G N + +++H+NH+I Sbjct 806 YRGAVDTLYVDEAYACHSGTLLALIAAVRPTGKVVLCGDPKQVGCVNQLQMRMHYNHEIS 865 Query 301 TEVYHKSISRRCTQTVTAIVSTLFYDKRMKTVNPCADKIIIDTTGTTKPHKDDLILTCFR 360 V K+ISRRCT T+TAIVS L Y+ RMKT NPC ++IDTTG+TKP K+ L+LTCFR Sbjct 866 DRVLRKNISRRCTHTLTAIVSNLNYEGRMKTTNPCKKPVLIDTTGSTKPDKEALVLTCFR 925 Query 361 GWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRYKVNENPLYSQTSEHVNVLLTRTEKRI 420 GWVK L+I Y ++E+MTAAASQGLTR+ VYAVR +V NPLY TSEH+ VLLTRT + Sbjct 926 GWVKDLKILYPHNELMTAAASQGLTREKVYAVRCRVTSNPLYEPTSEHITVLLTRTNDEL 985 Query 421 VWKTLAGDPWIKTLTAKYPGDFTASLDDWQREHDAIMARVLDK--PQTADVFQNKVNVCW 478 VWKTL DP I L+ GD++A+++DW+ EH+ I+A + + P+ + K N CW Sbjct 986 VWKTLPNDPLIPILSKPPKGDYSATMEDWEDEHNGILAALREACVPRM-NFAHGKRNTCW 1044 Query 479 AKALEPVLATANIVLTRQQWETLHP-FKHDRAYSPEMALNFFCTRFFGVDLDSGLFSAPT 537 A VL A +++T + + + P F+ D+ +S AL+ +G+D SG+ S Sbjct 1045 AVTSSRVLHEAGVLITPEDFNRIFPAFREDKPHSALAALDAVAALVWGLDTSSGILSGKG 1104 Query 538 VALTYRDQHWDNSPGKNMYGLNREVAKELSRRYPCITKAVDTGR---VADIRNNTIKDYS 594 + + HW NS YGLN + + P + KA+ R DI + Sbjct 1105 SFMRLENSHWSNSNRGYEYGLNLDALEGYEIANPRMIKALKQRRGRECYDIETGKLVPMD 1164 Query 595 PTINVVPLNRRLPHSLI----------------VDH-------KGQGTTDHSGFLSKMKG 631 P VP+NR +PH L+ VD K + + ++ Sbjct 1165 PGRVQVPINRVVPHVLVDTSAAAKPGFLENRLSVDRWDQVHSFKTRAAVKFAELTKRVSY 1224 Query 632 KSVLVIG-------DPISIPGKKV----ESMGPLPTNTIRCDLDLGIP-SHVGKYDIIFV 679 SVL +G D GK V E P + D+ P +++G +D++F Sbjct 1225 NSVLDLGAARGGVTDYCVKKGKTVTCVSEQWDSKPRGAVVITADINGPLNNLGIFDLVFC 1284 Query 680 NVRTPYRNHHYQQCEDHAIHHSMLTCK-AVHHLNTGGTCVAIGYGLADRATENIITAVAR 738 + P R HHY QCEDHA S CK V GG + YG+ADR TE + AR Sbjct 1285 DAAGPRRYHHYAQCEDHA-RRSTSACKHGVERTAKGGVFIVKAYGMADRRTERAVECTAR 1343 Query 739 SFRFTRVCQPKNT-AENTEVLFVFFGKDNGNHTHDQDRLGVVLDNIY 784 F+ V +P ++ N EV F F G+ H LG L +IY Sbjct 1344 YFKSVSVEKPVSSRITNVEVFFKFSGRCR-PHARSIAHLGPQLTDIY 1389 >RecName: Full=Replication protein 1a; Includes: RecName: Full=ATP-dependent helicase; Includes: RecName: Full=Methyltransferase [Pelargonium zonate spot virus isolate tomato] Sequence ID: Q9DUT3.1 Length: 962 Range 1: 683 to 798 Score:63.5 bits(153), Expect:5e-09, Method:Compositional matrix adjust., Identities:44/118(37%), Positives:64/118(54%), Gaps:7/118(5%) Query 173 PAAPHKVPTIGVYGVPGSGKSGIIKSA-VTKKDLVVSAKKENCAEII----RDVRRMRRM 227 PA P K + GV G GK+ IK A V + DL+V+A K++ +I+ RD + R Sbjct 683 PAQPPKGNINLMDGVAGCGKTTAIKRAFVFESDLIVTANKKSSEDILKAMFRDTPDIGRN 742 Query 228 DVAARTVDSVLLNGVKHPVNTLYIDEAFACHAGTLLALIAIVKPKKVVLCGDPKQCGF 285 V RT DSVL++GV H V + DE H G L A++ I ++++ GD +Q F Sbjct 743 KV--RTADSVLMHGVAHKVKRVLFDEVSLVHFGQLCAILTISGAEELIGFGDSEQISF 798 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Tobacco mild green mosaic virus] Sequence ID: P18339.2 Length: 1609 Range 1: 815 to 1090 Score:62.4 bits(150), Expect:1e-08, Method:Compositional matrix adjust., Identities:75/280(27%), Positives:115/280(41%), Gaps:21/280(7%) Query 172 RPAAPHKVPT---IGVYGVPGSGK-SGIIKSAVTKKDLVVSAKKENCAEIIRDVRR---M 224 R PH+ PT + V GVPG GK G + +DL++ K+ A I R + Sbjct 815 RDGEPHE-PTAKMVLVDGVPGCGKYKGDFERFDLDEDLILVPGKQAAAMIRRRANSSGLI 873 Query 225 RRMDVAARTVDSVLLNGVKHPVNTLYIDEAFACHAGTLLALIAIVKPKKVVLCGDPKQCG 284 R RTVDS+L++ L+IDE H G + L+ I + GD +Q Sbjct 874 RATMDNVRTVDSLLMHPKPRSHKRLFIDEGLMLHTGCVNFLVLISGCDIAYIYGDTQQIP 933 Query 285 FFNMMC---LKVHFNHDICTEVYHKSISRRCTQTVTAIVSTLFYDKRMKTVNPCADKIII 341 F N + HF EV + + RC V + + Y+ + T + + Sbjct 934 FINRVQNFPYPKHFEKLQVDEVEMRRTTLRCPGDVNFFLQSK-YEGAVTTTSTVQRSVSS 992 Query 342 DTTG-------TTKPHKDDLILTCFRGWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRY 394 + G +KP K ++ + + YKN + T QG T + V VR Sbjct 993 EMIGGKGVLNSVSKPLKGKIVTFTQADKFELEEKGYKN--VNTVHEIQGETFEDVSLVRL 1050 Query 395 KVNENPLYSQTSEHVNVLLTRTEKRIVWKTLAGDPWIKTL 434 L S++S HV V LTR K + T+ DP ++ + Sbjct 1051 TATPLTLISKSSPHVLVALTRHTKSFKYYTVVLDPLVQII 1090 >RecName: Full=Replicase polyprotein 1ab; Contains: RecName: Full=Leader protease; Short=L-Pro; AltName: Full=Papain-like cysteine proteinase; Short=PCP; Contains: RecName: Full=Methyltransferase/helicase/RNA-directed RNA polymerase [Beet yellows virus isolate Ukraine] Sequence ID: Q08534.2 Length: 3094 Range 1: 2251 to 2520 Score:58.9 bits(141), Expect:2e-07, Method:Compositional matrix adjust., Identities:67/272(25%), Positives:111/272(40%), Gaps:34/272(12%) Query 188 PGSGKSGIIKSAVTK-----KDLVVSAKKENCAEIIRDVRR--MRRMDVAART------V 234 PG GK+ + + L+++A K + EI+ V R + D +T + Sbjct 2251 PGGGKTTTLIKVFCETFSKVNSLILTANKSSREEILAKVNRIVLDEGDTPLQTRDRILTI 2310 Query 235 DSVLLNGVKHPVNTLYIDEAFACHAGTLLALIAIVKPKKVVLCGDPKQCGFFNMMCLKVH 294 DS L+N LY+DE F HAG +A I K +L GD +Q + L Sbjct 2311 DSYLMNNRGLTCKVLYLDECFMVHAGAAVACIEFTKCDSAILFGDSRQIRYGRCSELDTA 2370 Query 295 FNHDICTEVYHKS-----ISRRCTQTVTAIVSTLFYDKRMKTVNPCADKII------IDT 343 D+ V +S +S RC V A +ST FY K + T N + I++ Sbjct 2371 VLSDLNRFVDDESRVYGEVSYRCPWDVCAWLST-FYPKTVATTNLVSAGQSSMQVREIES 2429 Query 344 TGTTKPHKDDLILTCFRGWVKQLQIDYKNHE--------IMTAAASQGLTRKGVYAVRYK 395 + + + LT + K L + ++T +QG T + V VR K Sbjct 2430 VDDVEYSSEFVYLTMLQSEKKDLLKSFGKRSRSSVEKPTVLTVHEAQGETYRKVNLVRTK 2489 Query 396 VNENPLYSQTSEHVNVLLTRTEKRIVWKTLAG 427 E+ + ++ H+ V L+R + + + L+ Sbjct 2490 FQEDDPF-RSENHITVALSRHVESLTYSVLSS 2520 >RecName: Full=RNA replication protein; Includes: RecName: Full=Methyltransferase; Includes: RecName: Full=Helicase; Includes: RecName: Full=RNA-directed RNA polymerase [Citrus leprosis virus C BRA/Cordeiropolis] Sequence ID: Q1KZ59.1 Length: 2512 Range 1: 1558 to 1682 Score:45.8 bits(107), Expect:0.002, Method:Compositional matrix adjust., Identities:37/125(30%), Positives:56/125(44%), Gaps:13/125(10%) Query 184 VYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVRRM------RRMDVAARTVDSV 237 V V G+GK+ ++ DLVV EN I ++R + +D RT++ Sbjct 1558 VQAVAGAGKTTLLVETFLITDLVVCPTVENRDSIRLRIKRRYPDLDPKEVDCRVRTINGY 1617 Query 238 L------LNGVKHPVNT-LYIDEAFACHAGTLLALIAIVKPKKVVLCGDPKQCGFFNMMC 290 L L V NT L +DEA HAG L L I +++ GD KQ F + + Sbjct 1618 LVDFSTKLAKVTLNENTRLLVDEAIMYHAGCLFVLCMIYNIRRMFCVGDKKQIPFVSRID 1677 Query 291 LKVHF 295 K+++ Sbjct 1678 FKLNY 1682 >RecName: Full=Replicase polyprotein 1ab; Contains: RecName: Full=Leader protease; Short=L-PRO; Contains: RecName: Full=Methyltransferase/helicase/RNA-directed RNA polymerase [Lettuce infectious yellows virus isolate 92] Sequence ID: Q83045.2 Length: 2379 Range 1: 1575 to 1683 Score:42.4 bits(98), Expect:0.017, Method:Compositional matrix adjust., Identities:34/110(31%), Positives:52/110(47%), Gaps:11/110(10%) Query 188 PGSGKSGIIKSAVTK------KDLVVSAKKENCAEIIRDVRR--MRRMDVAARTVDSVLL 239 PG+GK+ I ++K K L +S K E+I +++ + + + +T DS L+ Sbjct 1575 PGAGKTTTIAKLMSKDLKNKVKCLALSYTKVGRLELIDKLKKDGIEKPEKYVKTYDSFLM 1634 Query 240 NG--VKHPVNTLYIDEAFACHAGTLLALIAIVKPKKVVLCGDPKQCGFFN 287 N + VN LY DE F HAG L L+ + + GD Q F N Sbjct 1635 NNDNILEIVN-LYCDEVFMMHAGHFLTLLTKIAYQNGYCYGDVNQIPFIN 1683 >RecName: Full=Replicase polyprotein 1a; Contains: RecName: Full=Leader protease; Short=L-PRO; Contains: RecName: Full=Methyltransferase/helicase [Lettuce infectious yellows virus isolate 92] Sequence ID: Q83044.1 Length: 1873 Range 1: 1575 to 1683 Score:42.4 bits(98), Expect:0.018, Method:Compositional matrix adjust., Identities:34/110(31%), Positives:52/110(47%), Gaps:11/110(10%) Query 188 PGSGKSGIIKSAVTK------KDLVVSAKKENCAEIIRDVRR--MRRMDVAARTVDSVLL 239 PG+GK+ I ++K K L +S K E+I +++ + + + +T DS L+ Sbjct 1575 PGAGKTTTIAKLMSKDLKNKVKCLALSYTKVGRLELIDKLKKDGIEKPEKYVKTYDSFLM 1634 Query 240 NG--VKHPVNTLYIDEAFACHAGTLLALIAIVKPKKVVLCGDPKQCGFFN 287 N + VN LY DE F HAG L L+ + + GD Q F N Sbjct 1635 NNDNILEIVN-LYCDEVFMMHAGHFLTLLTKIAYQNGYCYGDVNQIPFIN 1683 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; Contains: RecName: Full=3C-like serine proteinase; Short=3CLSP; AltName: Full=M-PRO; AltName: Full=nsp3; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=Non-structural protein 5; Short=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp9; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp10; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp11; Contains: RecName: Full=Non-structural protein 12; Short=nsp12; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp13; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp14 [White bream virus (strain DF24/00)] Sequence ID: Q008X6.1 Length: 6872 Range 1: 5647 to 5811 Score:37.0 bits(84), Expect:0.93, Method:Compositional matrix adjust., Identities:40/170(24%), Positives:64/170(37%), Gaps:42/170(24%) Query 184 VYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVRRM-RRMD----------VAAR 232 + G PG+GK+ + K+ + +A N I ++ + MD V+ Sbjct 5647 IIGPPGTGKTTYVM-----KNFIDTASPANKVAYIAPTHKLVQSMDQAIWDKYNHTVSVS 5701 Query 233 TVDSVLLNG-VKHPVN--------------------TLYIDEAFACHAGTLLALIAIVKP 271 V S L N +P+N TL DE T++ I++VKP Sbjct 5702 VVKSELNNNKYNYPLNSATKTIMLGTPGAVCTHAGCTLIFDEVTLSQLNTIINAISVVKP 5761 Query 272 KKVVLCGDPKQCG-FFNMMCLKVHFNH----DICTEVYHKSISRRCTQTV 316 +V+ GDP Q G +M L + + C + SI RC + Sbjct 5762 SQVIFLGDPLQLGPVTHMRSLSYSYTNFPLFQFCNDSRVLSICYRCPSNI 5811 >RecName: Full=Movement protein TGB1; AltName: Full=P42; AltName: Full=Triple gene block 1 protein; Short=TGBp1 [Beet necrotic yellow vein virus S] Sequence ID: Q65674.1 Length: 384 Range 1: 121 to 254 Score:34.7 bits(78), Expect:3.0, Method:Compositional matrix adjust., Identities:37/140(26%), Positives:57/140(40%), Gaps:7/140(5%) Query 184 VYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVRRMRRMDVAARTVDSVLLNGVK 243 V G PG GKS IK+ + K K C + + + + VD + V Sbjct 121 VLGAPGVGKSTSIKNLLDK--FGAKHKMVLCLPFSQLLEGVFAGRLDTFLVDDLFCRSVG 178 Query 244 H-PVNTLYIDEAFACHAGTLLALIAIVKPKKVVLCGDPKQCGFFNMMCLKVHFNHDICTE 302 + NT+ +DE H +L L + K V+ GDP Q G V++N I E Sbjct 179 YGKYNTMLVDEVTRVHMCEILVLAGHLGVKNVICFGDPAQ-GLNYKAGSAVNYNFPIIAE 237 Query 303 VYHKSISRRCTQTVTAIVST 322 Y SRR + ++++ Sbjct 238 CYA---SRRFGKATADLINS 254