BLASTX 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= AALF01000001 AALF01000001.1 Yersinia intermedia ATCC 29909 765, whole genome shotgun sequence. (4000 letters) Database: st 4429 sequences; 1,395,779 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value P58525 MTOX_SALTY N-methyl-L-tryptophan oxidase (EC 1.5.3.-) (MT... 451 e-127 P06204 PYRC_SALTY Dihydroorotase (EC 3.5.2.3) (DHOase). 422 e-119 Q8ZQ21 Q8ZQ21_SALTY Putative cytoplasmic protein. 121 3e-28 Q8ZQ20 Q8ZQ20_SALTY DNA damage-inducible protein I. 105 2e-23 Q8ZKB6 Q8ZKB6_SALTY Putative luxR family bacterial regulatory pr... 72 3e-13 Q8XGS7 Q8XGS7_SALTY Gifsy-1 prophage protein (Gifsy-2 prophage p... 68 4e-12 P54698 RCSA_SALTY Colanic acid capsular biosynthesis activation ... 54 8e-08 P0A1G3 MSGA_SALTY Virulence protein msgA. 49 3e-06 Q8ZP34 Q8ZP34_SALTY Response regulator in two-component regulato... 44 6e-05 Q8ZMS6 Q8ZMS6_SALTY Fels-2 prophage protein. 44 6e-05 Q8ZM32 Q8ZM32_SALTY Putative response regulator. 37 0.010 O54294 CSGD_SALTY Probable csgAB operon transcriptional regulato... 33 0.11 Q8ZLC5 Q8ZLC5_SALTY Putative transcriptional regulator. 31 0.55 Q7CQM8 Q7CQM8_SALTY Tetrathionate reductase complex: response re... 30 1.2 Q8ZLH4 Q8ZLH4_SALTY Sn-glycerol-3-phosphate dehydrogenase (EC 1.... 28 4.6 Q9RFV5 Q9RFV5_SALTY Hypothetical protein (Putative response regu... 28 6.0 Q8ZRU2 MURC_SALTY UDP-N-acetylmuramate--L-alanine ligase (EC 6.3... 28 6.0 Q8ZM83 Q8ZM83_SALTY Putative metalloendopeptidase. 27 7.9 >P58525 MTOX_SALTY N-methyl-L-tryptophan oxidase (EC 1.5.3.-) (MTOX). Length = 372 Score = 451 bits (1161), Expect = e-127 Identities = 222/372 (59%), Positives = 260/372 (69%) Frame = -1 Query: 2011 MDYDLXXXXXXXXXXXXXXXXXXXGLNVLMVDSAMPPHQAGSHHGDTRIIRHAYGEGEKY 1832 M YDL GL VLM D+ MPPHQ GSHHGDTR+IRHAYGEGEKY Sbjct: 1 MKYDLIIIGSGSVGAAAGYYATRAGLKVLMTDAHMPPHQQGSHHGDTRLIRHAYGEGEKY 60 Query: 1831 VPLVLRAQALWDQLSAQTGESLFQASGVLNLGPDDSIFLQNAQHSAQQYNLPVETLTAAQ 1652 VPLVLRAQ LWD+LS E +F SGV+NLGP DS FL N SAQQ+ L VE L A Sbjct: 61 VPLVLRAQTLWDELSTHNEEPIFVRSGVVNLGPADSAFLANVARSAQQWQLNVERLDATA 120 Query: 1651 IREKWPVFSVPDNYIGVFEPQSGYLRSELAIKTLIKAVTEAGCGILFNCPVTAIEPLDGG 1472 + +WP VPDNYIG+FE SG+LRSELAI T ++ EAGC LFN PV+ I D G Sbjct: 121 LMTRWPEIRVPDNYIGLFEADSGFLRSELAITTWLRLAREAGCAQLFNSPVSHIHHDDNG 180 Query: 1471 VDVVTIDGTYSAKKVIVTAGTWVKELLPELPVTAIRKVFSWHHADGRYSEGNHFPAFTVE 1292 V + T +G Y A K +++AGTWVK L+PELPV +RKVF+W ADGRYS N FPAFT E Sbjct: 181 VTIETSEGCYHASKALISAGTWVKALVPELPVQPVRKVFAWFKADGRYSTKNRFPAFTGE 240 Query: 1291 TPDNIHYYGFPSQNDELKLGKHNGGQPIETAAQRKPFGGYAEDGTEVFGFLRSFLPGVGV 1112 P+ YYGFP++NDELK+GKHNGGQ I+ +RKPF A DG E F FLR+ LPG+G Sbjct: 241 MPNGDQYYGFPAENDELKIGKHNGGQLIQAPEERKPFAAVASDGAEAFPFLRNVLPGIGG 300 Query: 1111 CLHGAACSYDMSPDEDFIIDTLPDNNNIMVVTGLSGHGFKFATALGEVAALFAQNKPSPI 932 CLHGAAC+YD SPDEDFIIDTLP + N +V+TGLSGHGFKFA LGE+AA FA K Sbjct: 301 CLHGAACTYDNSPDEDFIIDTLPGHENTLVITGLSGHGFKFAPVLGEIAADFALGKTPSF 360 Query: 931 DISAFSLSRFAK 896 D++ F LSRF++ Sbjct: 361 DLTPFRLSRFSQ 372 >P06204 PYRC_SALTY Dihydroorotase (EC 3.5.2.3) (DHOase). Length = 347 Score = 422 bits (1085), Expect = e-119 Identities = 199/280 (71%), Positives = 236/280 (84%) Frame = -2 Query: 3999 PAGHNFTPLMTCYLTNTLDVKELTTGFEQGVFTAAKLYPANATTNSNHGVSDIPAIYPLF 3820 PAGH+FTPLMTCYLT++LD EL GF +GVFTAAKLYPANATTNS+HGV+ + AI P+ Sbjct: 67 PAGHDFTPLMTCYLTDSLDADELERGFHEGVFTAAKLYPANATTNSSHGVTSVDAIMPVL 126 Query: 3819 EQMQKIGMPLLIHGEVTEAAVDIFDREARFIDQILEPVRRQFPELKIVFEHITTKDAADY 3640 E+M+K+G+PLL+HGEVT A VDIFDREARFID ++EP+R++ LK+VFEHITTKDAA Y Sbjct: 127 ERMEKLGIPLLVHGEVTHADVDIFDREARFIDTVMEPLRQRLTALKVVFEHITTKDAAQY 186 Query: 3639 VLAGNRFLGATITPQHLMFNRNHMLVGGIRPHLFCLPILKRSTHQEALRQAVASGSDRFF 3460 V GN +L ATITPQHLMFNRN MLVGGIRPHL+CLPILKR+ HQ+ALR+ VASG R F Sbjct: 187 VRDGNDYLAATITPQHLMFNRNDMLVGGIRPHLYCLPILKRNIHQQALRELVASGFTRAF 246 Query: 3459 LGTDSAPHAKHRKESSCGCAGVFNAPSALPAYTTVFEEMGALEHLEAFCSLNGPRFYGLP 3280 LGTDSAPH++HRKE+SCGCAG FNAPSAL +Y VFEEM AL H EAFCSLNGP+FYGLP Sbjct: 247 LGTDSAPHSRHRKETSCGCAGCFNAPSALGSYAAVFEEMNALAHFEAFCSLNGPQFYGLP 306 Query: 3279 VNEDFVELVKAPFQQPEEIPLGDESVIPFLAGQTINWSVK 3160 +N +VELV+ Q P I L D+S++PFLAG+T+ WSVK Sbjct: 307 MNTGWVELVRDEQQIPGNIALADDSLVPFLAGETVRWSVK 346 >Q8ZQ21 Q8ZQ21_SALTY Putative cytoplasmic protein. Length = 84 Score = 121 bits (304), Expect = 3e-28 Identities = 57/84 (67%), Positives = 70/84 (83%) Frame = -2 Query: 2535 MDRNDEVIQTHPLVGWDISTVDVYDAMMIRLHYLSSMDQPPEDALVDRTLWLTTDVARQL 2356 M++N+EVIQTHPLVGWDISTVD YDA+M+RLHY + PE V +TLWLTTDVARQ Sbjct: 1 MEKNNEVIQTHPLVGWDISTVDSYDALMLRLHYQTPNRPEPEGTEVGQTLWLTTDVARQF 60 Query: 2355 INILEAGIAKIESSEYQDLDHRKH 2284 I+ILEAGIAKIES +YQ+ ++R+H Sbjct: 61 ISILEAGIAKIESGDYQENEYRRH 84 >Q8ZQ20 Q8ZQ20_SALTY DNA damage-inducible protein I. Length = 81 Score = 105 bits (262), Expect = 2e-23 Identities = 51/78 (65%), Positives = 62/78 (79%) Frame = -1 Query: 3040 MRVEVSIDKKNPLPAGAIEALTHELSKRLNTKFPDTTTTVQVRYAGANNLSVLGGAKTDK 2861 MR+EV+I K +PLPAGAI+AL ELS+R++ FP+ V VRYA ANNLSV+G +K DK Sbjct: 1 MRIEVTIAKTSPLPAGAIDALAGELSRRISHHFPENLGNVTVRYATANNLSVIGASKEDK 60 Query: 2860 DLISEILQEIWESADDWF 2807 + ISEILQE WESADDWF Sbjct: 61 ERISEILQETWESADDWF 78 >Q8ZKB6 Q8ZKB6_SALTY Putative luxR family bacterial regulatory protein. Length = 195 Score = 72.0 bits (175), Expect = 3e-13 Identities = 54/187 (28%), Positives = 87/187 (46%), Gaps = 6/187 (3%) Frame = -2 Query: 630 MKILIIDECFYTRSGVNTYLNN----SSCLNLMDVPTVKQATVAIHQFDPEVIIVNLTQY 463 +KIL+ID C +TR+G+ +LN+ SS L + + + A I Q+ P ++I +L + Sbjct: 2 LKILVIDRCHFTRTGMEAWLNHTDVLSSSLLVSGMNNLILAKEHILQWKPHLVIADLYGF 61 Query: 462 CRYGGHCPLLAQFLSCCLRAKVYIYLDASYPFSETPIPLTDSVSILAKRHLP--ELLQRL 289 + F + C + + + P+ P S ++L+K H P EL QR+ Sbjct: 62 LNDALPEQPINAFFAACRMTPLVLLQSGNMPYR----PQYASHAVLSK-HTPLHELAQRI 116 Query: 288 SSVSDEDISKPQSPYPASLFSPQEHKIMCYWMMEMPNYRIARKLNISDSTVYSHKRHITE 109 + L SPQE K++ W N IA L I TVY++KR+I Sbjct: 117 KGALHTHPLQEAPESATPLLSPQEEKVLAMWTEGTSNKEIAYALGIHGKTVYTYKRNIRM 176 Query: 108 KIKVRNR 88 K+ + NR Sbjct: 177 KLHMDNR 183 >Q8XGS7 Q8XGS7_SALTY Gifsy-1 prophage protein (Gifsy-2 prophage protein). Length = 77 Score = 68.2 bits (165), Expect = 4e-12 Identities = 35/78 (44%), Positives = 46/78 (58%) Frame = -1 Query: 3040 MRVEVSIDKKNPLPAGAIEALTHELSKRLNTKFPDTTTTVQVRYAGANNLSVLGGAKTDK 2861 MR+E+ I + LP GA+ AL EL RL ++ + T+ R + LS++G A DK Sbjct: 1 MRIELVISRAKQLPEGAVPALEKELITRLQNQYENCNLTI--RRGSQDGLSIVGAADGDK 58 Query: 2860 DLISEILQEIWESADDWF 2807 I ILQE WESADDWF Sbjct: 59 KRIQSILQETWESADDWF 76 >P54698 RCSA_SALTY Colanic acid capsular biosynthesis activation protein A. Length = 207 Score = 53.9 bits (128), Expect = 8e-08 Identities = 45/189 (23%), Positives = 80/189 (42%), Gaps = 8/189 (4%) Frame = -2 Query: 630 MKILIIDECFYTRSGVNTYLNNSSCLN--LMDVPTVKQATVAIHQFDPEVIIVNLTQYCR 457 M +I+D C YTR G++ YL + + D+ TV + +A P V+ +N + Sbjct: 1 MSTIIMDLCSYTRLGLSGYLVSRGVKKREINDIETVDELAIACGAHQPSVVFINEDCFIH 60 Query: 456 YGGHCPLLAQFLSCCLRAKVYIYLDASYPFSETPIPLTDSVSILAKRHLPELLQRLSSVS 277 + Q ++ +++ + + + + ++ I +K P+ L L Sbjct: 61 TPSDSQQIKQIINQHPDTLFIVFMAIANVHFDEYLLVRKNLLISSKSIKPDSLDTLLG-- 118 Query: 276 DEDISKPQSPY------PASLFSPQEHKIMCYWMMEMPNYRIARKLNISDSTVYSHKRHI 115 DI K +S P S E ++ WM +I+ ++NI TV SHK +I Sbjct: 119 --DILKKESGISGTINLPTLSLSRTESSMLRMWMEGQGTIQISDRMNIKAKTVSSHKGNI 176 Query: 114 TEKIKVRNR 88 KIK N+ Sbjct: 177 KRKIKTHNK 185 >P0A1G3 MSGA_SALTY Virulence protein msgA. Length = 79 Score = 48.5 bits (114), Expect = 3e-06 Identities = 32/83 (38%), Positives = 48/83 (57%), Gaps = 2/83 (2%) Frame = -1 Query: 3040 MRVEVSIDKKNP--LPAGAIEALTHELSKRLNTKFPDTTTTVQVRYAGANNLSVLGGAKT 2867 M VE+ DK+N LP GA E + +EL+KR++ FPD V+ A A N KT Sbjct: 1 MFVELVYDKRNVEGLP-GAREIILNELTKRVHQLFPDAQVKVKPMQANALNSDC---TKT 56 Query: 2866 DKDLISEILQEIWESADDWFDAD 2798 +K+ + +L+E++E AD W A+ Sbjct: 57 EKERLHRMLEEMFEEADMWLVAE 79 >Q8ZP34 Q8ZP34_SALTY Response regulator in two-component regulatory system with NarX (Or NarQ). Length = 216 Score = 44.3 bits (103), Expect = 6e-05 Identities = 45/199 (22%), Positives = 93/199 (46%), Gaps = 18/199 (9%) Frame = -2 Query: 624 ILIIDECFYTRSGVNTYLNNSSCLNLM-DVPTVKQATVAIHQFDPEVIIVNLTQYCRYGG 448 IL+ID+ R+GV ++ + ++++ + +Q DP++I+++L G Sbjct: 9 ILLIDDHPMLRTGVKQLVSMAPDISVVGEASNGEQGIDLAESLDPDLILLDLNMPGMNG- 67 Query: 447 HCPLLAQFLSCCLRAKVYIYLDASYPFSETPIPLTDSVSILAKRHLPE-LLQRLSSVSDE 271 L + L ++ ++ +++ + L K PE LL+ L + Sbjct: 68 -LETLDKLREKALSGRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALQQAAAG 126 Query: 270 DISKPQSPYP---ASL-------------FSPQEHKIMCYWMMEMPNYRIARKLNISDST 139 ++ ++ P ASL +P+E I+ +PN IAR+L+I++ST Sbjct: 127 EMVLSEALTPVLAASLRANRATTDRDVTQLTPRERDILKLIAQGLPNKMIARRLDITEST 186 Query: 138 VYSHKRHITEKIKVRNRLE 82 V H +H+ +K+K+++R+E Sbjct: 187 VKVHVKHMLKKMKLKSRVE 205 >Q8ZMS6 Q8ZMS6_SALTY Fels-2 prophage protein. Length = 101 Score = 44.3 bits (103), Expect = 6e-05 Identities = 22/78 (28%), Positives = 43/78 (55%), Gaps = 1/78 (1%) Frame = -1 Query: 3040 MRVEVSIDKKNPLPAGAIEALTHELSKRLNTKFPDTTTTVQVRYAGANNLSVLG-GAKTD 2864 MR+E+ IDK+ + ++AL EL + L +P T +++R +N + + G + Sbjct: 25 MRIEIMIDKEQKISQSTLDALESELYRNLRPLYP--KTVIRIRKGSSNGVELTGLQLDEE 82 Query: 2863 KDLISEILQEIWESADDW 2810 + + +I+Q++WE D W Sbjct: 83 RKQVMKIMQKVWED-DSW 99 >Q8ZM32 Q8ZM32_SALTY Putative response regulator. Length = 227 Score = 37.0 bits (84), Expect = 0.010 Identities = 23/53 (43%), Positives = 32/53 (60%) Frame = -2 Query: 237 SLFSPQEHKIMCYWMMEMPNYRIARKLNISDSTVYSHKRHITEKIKVRNRLEL 79 S+ + +E +I+ N IAR+LNIS STV +H R+I K +V NR EL Sbjct: 160 SILTAKEREIVGMVCEGASNKLIARQLNISLSTVKTHLRNIFAKTEVINRTEL 212 >O54294 CSGD_SALTY Probable csgAB operon transcriptional regulatory protein. Length = 216 Score = 33.5 bits (75), Expect = 0.11 Identities = 18/53 (33%), Positives = 33/53 (62%) Frame = -2 Query: 240 ASLFSPQEHKIMCYWMMEMPNYRIARKLNISDSTVYSHKRHITEKIKVRNRLE 82 ++L + +E +I+ + N IAR L IS++TV +H ++ +KI V+NR + Sbjct: 153 SALLTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNLFKKIAVKNRTQ 205 >Q8ZLC5 Q8ZLC5_SALTY Putative transcriptional regulator. Length = 200 Score = 31.2 bits (69), Expect = 0.55 Identities = 14/39 (35%), Positives = 22/39 (56%) Frame = -2 Query: 180 NYRIARKLNISDSTVYSHKRHITEKIKVRNRLELCFIYN 64 N +I R LNIS TV +H + ++ V+NR + + N Sbjct: 159 NKQIGRALNISTGTVKAHLESLYRRLDVKNRTQAAMMLN 197 >Q7CQM8 Q7CQM8_SALTY Tetrathionate reductase complex: response regulator (TtrR). Length = 206 Score = 30.0 bits (66), Expect = 1.2 Identities = 19/78 (24%), Positives = 36/78 (46%) Frame = -2 Query: 312 LPELLQRLSSVSDEDISKPQSPYPASLFSPQEHKIMCYWMMEMPNYRIARKLNISDSTVY 133 L L+R +VS +++ + +P+E ++ N IA +NI+ TV Sbjct: 109 LQAALERALTVSSAAVARREIILCYQQLTPKERELASLVAKGFMNREIAEAMNIAVRTVE 168 Query: 132 SHKRHITEKIKVRNRLEL 79 H+ + EK++ + EL Sbjct: 169 VHRARVMEKMQAGSLAEL 186 >Q8ZLH4 Q8ZLH4_SALTY Sn-glycerol-3-phosphate dehydrogenase (EC 1.1.99.5). Length = 502 Score = 28.1 bits (61), Expect = 4.6 Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 3/64 (4%) Frame = -1 Query: 3004 LPAGAIEALTHELSKRLNTKFPDTTTTVQVRYA---GANNLSVLGGAKTDKDLISEILQE 2834 LP G I+ + + +L ++P T ++ Y+ G+N +LG A + DL + E Sbjct: 386 LPGGDIDGSREDYAAKLRRRYPFLTESLARHYSRTYGSNTEWILGEATSLLDLGEDFGHE 445 Query: 2833 IWES 2822 +E+ Sbjct: 446 FYEA 449 >Q9RFV5 Q9RFV5_SALTY Hypothetical protein (Putative response regulator). Length = 213 Score = 27.7 bits (60), Expect = 6.0 Identities = 13/52 (25%), Positives = 26/52 (50%) Frame = -2 Query: 222 QEHKIMCYWMMEMPNYRIARKLNISDSTVYSHKRHITEKIKVRNRLELCFIY 67 +E +++ +++ + +IA +S T+Y H+ I K + L FIY Sbjct: 141 KEEELLWHFLYKKSMSQIASSYGMSRKTLYIHRLRICRKYGFKRFFHLLFIY 192 >Q8ZRU2 MURC_SALTY UDP-N-acetylmuramate--L-alanine ligase (EC 6.3.2.8) (UDP-N- acetylmuramoyl-L-alanine synthetase). Length = 491 Score = 27.7 bits (60), Expect = 6.0 Identities = 24/71 (33%), Positives = 31/71 (43%), Gaps = 1/71 (1%) Frame = -2 Query: 537 PTVKQATV-AIHQFDPEVIIVNLTQYCRYGGHCPLLAQFLSCCLRAKVYIYLDASYPFSE 361 PT AT+ A P+ +V L Q RY L F + + + LD YP E Sbjct: 356 PTEVDATIKAARAGWPDKNLVMLFQPHRYTRTRDLYDDFANVLTQVDALLMLDV-YPAGE 414 Query: 360 TPIPLTDSVSI 328 PIP DS S+ Sbjct: 415 APIPGADSRSL 425 >Q8ZM83 Q8ZM83_SALTY Putative metalloendopeptidase. Length = 252 Score = 27.3 bits (59), Expect = 7.9 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = +3 Query: 1119 TPGKKLRKKPNTSVPSSA*PPKGLRC 1196 T K +P++SVP S+ PP G RC Sbjct: 101 TATKTAAVRPSSSVPKSSWPPVGQRC 126 Database: st Posted date: Oct 4, 2007 2:14 PM Number of letters in database: 1,395,779 Number of sequences in database: 4429 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4429 Number of Hits to DB: 9,981,964 Number of extensions: 221656 Number of successful extensions: 567 Number of sequences better than 10.0: 18 Number of HSP's gapped: 564 Number of HSP's successfully gapped: 18 Length of query: 1333 Length of database: 1,395,779 Length adjustment: 96 Effective length of query: 1237 Effective length of database: 970,595 Effective search space: 1200626015 Effective search space used: 1200626015 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 32 (16.9 bits)