TBLASTN 2.2.15 [Oct-15-2006]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P0AG30|RHO_ECOLI Transcription termination factor rho (EC
3.6.1.-) (ATP-dependent helicase rho)....
(419 letters)
Database: 3g
884 sequences; 12,243,887 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AE008883 AE006468 |AE008883| Salmonella typhimurium LT2, section... 791 0.0
embl|AE006229|AE006229 Pasteurella multocida subsp. multocida st... 718 0.0
AE012498 AE008922 |AE012498| Xanthomonas campestris pv. campestr... 587 e-168
AE008761 AE006468 |AE008761| Salmonella typhimurium LT2, section... 79 2e-15
AE008832 AE006468 |AE008832| Salmonella typhimurium LT2, section... 74 1e-13
AE012222 AE008922 |AE012222| Xanthomonas campestris pv. campestr... 69 3e-12
AE012296 AE008922 |AE012296| Xanthomonas campestris pv. campestr... 67 1e-11
AE008787 AE006468 |AE008787| Salmonella typhimurium LT2, section... 65 4e-11
embl|AE006185|AE006185 Pasteurella multocida subsp. multocida st... 47 8e-06
AE008880 AE006468 |AE008880| Salmonella typhimurium LT2, section... 47 1e-05
AE012153 AE008922 |AE012153| Xanthomonas campestris pv. campestr... 41 6e-04
AE012366 AE008922 |AE012366| Xanthomonas campestris pv. campestr... 28 3.8
AE012207 AE008922 |AE012207| Xanthomonas campestris pv. campestr... 28 6.5
AE008878 AE006468 |AE008878| Salmonella typhimurium LT2, section... 28 6.5
AE008719 AE006468 |AE008719| Salmonella typhimurium LT2, section... 27 8.5
>AE008883 AE006468 |AE008883| Salmonella typhimurium LT2, section
187 of 220 of the complete genome.
Length = 20621
Score = 791 bits (2043), Expect = 0.0
Identities = 406/419 (96%), Positives = 408/419 (97%)
Frame = +3
Query: 1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQD 60
MNLTELKNTPVSELITLGE+MGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQD
Sbjct: 75 MNLTELKNTPVSELITLGESMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQD 254
Query: 61 GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN 120
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN
Sbjct: 255 GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN 434
Query: 121 FDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP 180
+DKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP
Sbjct: 435 YDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP 614
Query: 181 KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV 240
KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV
Sbjct: 615 KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV 794
Query: 241 QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF 300
QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF
Sbjct: 795 QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF 974
Query: 301 FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDY 360
FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDY
Sbjct: 975 FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDY 1154
Query: 361 NRSGTRKXXXXXXXXXXXKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMKRS 419
NRSGTRK KMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMKRS
Sbjct: 1155NRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMKRS 1331
>embl|AE006229|AE006229 Pasteurella multocida subsp. multocida str.
Pm70 section 196 of 204 of the complete genome.
Length = 11895
Score = 718 bits (1854), Expect = 0.0
Identities = 363/420 (86%), Positives = 392/420 (93%), Gaps = 1/420 (0%)
Frame = -2
Query: 1 MNLTELKNTPVSELITLGEN-MGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQ 59
M+LTELKN PVSEL+ LGE MGLENLAR+RKQDI+FAILKQHAKSGEDIFG GVLEIL
Sbjct: 4283 MHLTELKNRPVSELVELGEGQMGLENLARLRKQDIVFAILKQHAKSGEDIFGGGVLEILP 4104
Query: 60 DGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEV 119
DGFGFLRSADSSYLAGPDDIYVSPSQIRRFNL+TGD I GKIRPPKEGERYFALLKV++V
Sbjct: 4103 DGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLQTGDKIEGKIRPPKEGERYFALLKVDQV 3924
Query: 120 NFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAP 179
N D+PE +R+KILFENLTPLHANSRLRMERGNGSTEDLTAR+LDLASPIG+GQRGLIVAP
Sbjct: 3923 NDDRPEVSRSKILFENLTPLHANSRLRMERGNGSTEDLTARILDLASPIGKGQRGLIVAP 3744
Query: 180 PKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRH 239
PKAGKTMLLQNIAQSI YN+P+C L+VLLIDERPEEVTEMQR VKGEV+ASTFDEPA+RH
Sbjct: 3743 PKAGKTMLLQNIAQSITYNYPECELIVLLIDERPEEVTEMQRSVKGEVIASTFDEPATRH 3564
Query: 240 VQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKR 299
VQVAEMVIEKAKR VEHKKDV+ILLDSITRLARAYNTV PASGK+L+GGVDANALHRPKR
Sbjct: 3563 VQVAEMVIEKAKRSVEHKKDVVILLDSITRLARAYNTVTPASGKILSGGVDANALHRPKR 3384
Query: 300 FFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAID 359
FFGAARNVEEGGSLTIIATAL+DTGSKMDEVI+EEFKGTGNMELHLSRKIAEKRVFPAID
Sbjct: 3383 FFGAARNVEEGGSLTIIATALVDTGSKMDEVIFEEFKGTGNMELHLSRKIAEKRVFPAID 3204
Query: 360 YNRSGTRKXXXXXXXXXXXKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMKRS 419
+NRSGTRK KMWILRKI+HPMGE++AMEFLI+KL + KTND+FFEMMKRS
Sbjct: 3203 FNRSGTRKEDLLTSPDELQKMWILRKILHPMGEVEAMEFLIDKLMVAKTNDEFFEMMKRS 3024
>AE012498 AE008922 |AE012498| Xanthomonas campestris pv. campestris
str. ATCC 33913, section 406 of 460 of the complete
genome.
Length = 12898
Score = 587 bits (1512), Expect = e-168
Identities = 289/418 (69%), Positives = 352/418 (84%), Gaps = 1/418 (0%)
Frame = +2
Query: 2 NLTELKNTPVSELITLGENMGL-ENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQD 60
+L++LK P +L+ + + + + E +AR RKQD+IFA+LK + GE + DGVLEIL D
Sbjct: 7574 SLSDLKRMPAQKLLDIADQLNIQEGVARARKQDVIFALLKVLTRHGEGVAADGVLEILPD 7753
Query: 61 GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN 120
GFGFLR+A++SYLAGPDD Y+SPSQIRRFNLRTGD +SG+IR PK+GERYFAL V+ +N
Sbjct: 7754 GFGFLRAAEASYLAGPDDTYISPSQIRRFNLRTGDHLSGRIRFPKDGERYFALSIVDTIN 7933
Query: 121 FDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP 180
+ E ++NK+LFENLTPL R R+ERG+GSTED+T R+LDL +P G+GQR LIV+PP
Sbjct: 7934 GEPLEASKNKVLFENLTPLFPRRRFRLERGDGSTEDITGRILDLMAPQGKGQRALIVSPP 8113
Query: 181 KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV 240
KAGKTM++Q +A +I NHP+ ++VLLIDERPEEVTEMQR V+GEV++STFDEPA+RHV
Sbjct: 8114 KAGKTMMMQQVATAITTNHPEVHMIVLLIDERPEEVTEMQRTVRGEVISSTFDEPAARHV 8293
Query: 241 QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF 300
QVAEMVIE+AKRLVEHKKDV+ILLDSITRLARAYN VVP+SGKVLTGGVDANALHRPKRF
Sbjct: 8294 QVAEMVIERAKRLVEHKKDVVILLDSITRLARAYNNVVPSSGKVLTGGVDANALHRPKRF 8473
Query: 301 FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDY 360
FGAARNVEEGGSLTIIATAL++TGSKMDEVIYEEFKGTGN E+HL+R+I EKRV+PAID
Sbjct: 8474 FGAARNVEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNSEVHLNRRITEKRVYPAIDI 8653
Query: 361 NRSGTRKXXXXXXXXXXXKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMKR 418
NRSGTR+ K+WILRK++HPM EI AMEFL++K+ TK+ND+FF MKR
Sbjct: 8654 NRSGTRREDLLIEPELLQKIWILRKLLHPMDEIAAMEFLLDKMKTTKSNDEFFSSMKR 8827
>AE008761 AE006468 |AE008761| Salmonella typhimurium LT2, section 65 of
220 of the complete genome.
Length = 27863
Score = 79.0 bits (193), Expect = 2e-15
Identities = 68/213 (31%), Positives = 101/213 (47%), Gaps = 13/213 (6%)
Frame = +3
Query: 160 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVL-LIDERPEEVTE 218
R +D + G GQR I + P GK+ LL + N PD VL LI ER EV E
Sbjct: 22389 RAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-----NAPDADSNVLVLIGERGREVRE 22553
Query: 219 MQRLVKGE-------VVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLA 271
E +V +T D PA V+ + A+ ++ K V++L DS+TR A
Sbjct: 22554 FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA 22733
Query: 272 RAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVE-----EGGSLTIIATALIDTGSK 326
RA + A+G+ G + P F R +E E GS+T T L++ G
Sbjct: 22734 RAAREIALAAGETAVSGE-----YPPGVFSALPRLLERTGMGEKGSITAFYTVLVE-GDD 22895
Query: 327 MDEVIYEEFKGTGNMELHLSRKIAEKRVFPAID 359
M+E + +E + + + LSR++AE+ +PAID
Sbjct: 22896 MNEPLADEVRSLLDGHIVLSRRLAERGHYPAID 22994
>AE008832 AE006468 |AE008832| Salmonella typhimurium LT2, section 136
of 220 of the complete genome.
Length = 23125
Score = 73.6 bits (179), Expect = 1e-13
Identities = 64/215 (29%), Positives = 102/215 (47%), Gaps = 8/215 (3%)
Frame = -3
Query: 160 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEM 219
R +D G GQR I A GKTML+ + + + V ++ LI ER EVTE
Sbjct: 6113 RAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEAD----VFVIGLIGERGREVTEF 5946
Query: 220 QRLVKGE-------VVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLAR 272
+++ +V +T D P+ A++ A+ + K V++ +DS+TR AR
Sbjct: 5945 VDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYAR 5766
Query: 273 AYNTVVPASG-KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVI 331
A V ASG + G A+ R E GS+T T L+++ + D +
Sbjct: 5765 ALRDVALASGERPARRGYPASVFDNLPRLLERPGATSE-GSITAFYTVLLESEEEADPMA 5589
Query: 332 YEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTR 366
+E + + L+LSRK+A + +PAID +S +R
Sbjct: 5588 -DEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSR 5487
>AE012222 AE008922 |AE012222| Xanthomonas campestris pv. campestris
str. ATCC 33913, section 130 of 460 of the complete
genome.
Length = 11629
Score = 68.9 bits (167), Expect = 3e-12
Identities = 70/247 (28%), Positives = 112/247 (45%), Gaps = 10/247 (4%)
Frame = +3
Query: 160 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEM 219
R++D +G GQR I A GK+ L+ A+ + V +++LI ER EV E
Sbjct: 7362 RIVDGLMTLGEGQRMGIFAAAGVGKSTLIGMFARGTQCD----VNVIVLIGERGREVREF 7529
Query: 220 QRLVKGE-------VVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLAR 272
++ G VV +T D + + A + A+ + V++++DS+TR AR
Sbjct: 7530 IEMILGPDGLARSVVVCATSDRSSIERAKAAYVGTAIAEYFRDRGMRVLLMMDSLTRFAR 7709
Query: 273 AYNTVVPASGKVLTG-GVDANALHRPKRFFGAARNVEEGGSLTIIATALI--DTGSKMDE 329
A + A+G+ T G + R A + E GS+T T L DTGS +
Sbjct: 7710 AQREIGLAAGEPPTRRGFPPSVFAELPRLLERA-GMGETGSITAFYTVLAEDDTGS---D 7877
Query: 330 VIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKXXXXXXXXXXXKMWILRKIIHP 389
I EE +G + L LSR+IA + +PAID S +R LR+++
Sbjct: 7878 PIAEEVRGILDGHLILSREIAARNQYPAIDVLGSLSRVMSQIVSAEQRQYAGQLRRLLAK 8057
Query: 390 MGEIDAM 396
E++ +
Sbjct: 8058 HNEVETL 8078
>AE012296 AE008922 |AE012296| Xanthomonas campestris pv. campestris
str. ATCC 33913, section 204 of 460 of the complete
genome.
Length = 11064
Score = 66.6 bits (161), Expect = 1e-11
Identities = 69/266 (25%), Positives = 117/266 (43%), Gaps = 24/266 (9%)
Frame = -2
Query: 125 ENARNKILFENLTPLHANSRLRMERGNG---------------STEDLTARVLDLASPIG 169
E +++ + TPL +R E G ++ D+ R ++ PIG
Sbjct: 6863 EGLLGRVIDSDGTPLDGKGPIRAEGSVGMAGVSINPLAREPITTSLDVGVRAINAMLPIG 6684
Query: 170 RGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGE--- 226
RGQR + A GK+ LL + + + + V++V LI ER EV + GE
Sbjct: 6683 RGQRVGLFAGSGVGKSTLLGMMTRFTSAD----VIVVGLIGERGREVRDFVETTLGEEGL 6516
Query: 227 ----VVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASG 282
VVA+ D P + A A+ + +V++L+DS+TR A+A + + G
Sbjct: 6515 RRAVVVAAPADRPPLARLHGAYRATAIAEWFRDQGLNVLLLMDSLTRFAQAQREIGLSVG 6336
Query: 283 K-VLTGGVDANALHRPKRFFGAARNVEEG-GSLTIIATALIDTGSKMDEVIYEEFKGTGN 340
+ T G + + A N +G GS+T T L + G + I + + +
Sbjct: 6335 EPPTTRGYPPSVFAKLPALVERAGNGAKGRGSITAFYTVLTE-GDDPQDPIADAARAILD 6159
Query: 341 MELHLSRKIAEKRVFPAIDYNRSGTR 366
+ LSR++A+ ++PAID S +R
Sbjct: 6158 GHILLSRRVADSGLYPAIDLESSVSR 6081
>AE008787 AE006468 |AE008787| Salmonella typhimurium LT2, section 91 of
220 of the complete genome.
Length = 24186
Score = 65.1 bits (157), Expect = 4e-11
Identities = 62/220 (28%), Positives = 101/220 (45%), Gaps = 9/220 (4%)
Frame = +3
Query: 156 DLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEE 215
D R ++ +GRGQR + A GK++LL +A+ Y D V++V LI ER E
Sbjct: 17298 DTGVRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMAR---YTRAD-VIVVGLIGERGRE 17465
Query: 216 VTEMQRLVKGE-------VVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSIT 268
V + + G V+A+ D +Q A A+ + + V++++DS+T
Sbjct: 17466 VKDFIENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLT 17645
Query: 269 RLARAYNTVVPASGKV-LTGGVDANALHR-PKRFFGAARNVEEGGSLTIIATALIDTGSK 326
R A A + A G+ T G + + P A + GGS+T T L + G
Sbjct: 17646 RYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTE-GDD 17822
Query: 327 MDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTR 366
+ I + + + + LSR++AE +PAID S +R
Sbjct: 17823 QQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISR 17942
>embl|AE006185|AE006185 Pasteurella multocida subsp. multocida str.
Pm70 section 152 of 204 of the complete genome.
Length = 10229
Score = 47.4 bits (111), Expect = 8e-06
Identities = 50/228 (21%), Positives = 93/228 (40%), Gaps = 8/228 (3%)
Frame = +3
Query: 148 ERGNGSTEDLTA--RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLM 205
E + STE L +V+DL P +G + + GKT+ + + ++IA H +
Sbjct: 8364 EEQSNSTELLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVF 8543
Query: 206 VLLIDERPE------EVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKD 259
+ + E E+ + L K +V +EP ++VA + A++ + +D
Sbjct: 8544 AGVGERTREGNDFYHEMKDSNVLDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRD 8723
Query: 260 VIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATA 319
V+ +D+I R A V G++ + L + GS+T +
Sbjct: 8724 VLFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKTGSITSVQAV 8903
Query: 320 LIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRK 367
+ D F + + LSR+IA ++PA+D S +R+
Sbjct: 8904 YVPADDLTDPSPATTFAHLDSTVV-LSRQIASLGIYPAVDPLESTSRQ 9044
Score = 35.4 bits (80), Expect = 0.031
Identities = 56/292 (19%), Positives = 111/292 (38%), Gaps = 19/292 (6%)
Frame = +2
Query: 5 ELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDI-FGDGVLEILQDGFG 63
+L +T +SELI +K+ F ++ + +G + DG++ I G
Sbjct: 5570 QLNSTEISELI--------------KKRIAQFDVVSEARNTGTIVSVSDGIIRI----HG 5695
Query: 64 FLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEV---- 119
+A P + Y + R ++ G + G EG ++ EV
Sbjct: 5696 LSEVMQGEMIALPGNRYAMALNLERDSV--GAVVMGPYADLAEGMEVQCTGRILEVPVGR 5869
Query: 120 --------NFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTA-RVLDLASPIGR 170
+P + + +I + +P+ + ++R + T + +D PIGR
Sbjct: 5870 GLLGRVVNTLGEPIDGKGEIENDGFSPVEVIAPGVIDRKSVDQPVQTGYKAVDSMVPIGR 6049
Query: 171 GQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVL-----LIDERPEEVTEMQRLVKG 225
GQR LI+ + GKT L + + + C+ + + I ++ E L
Sbjct: 6050 GQRELIIGDRQTGKTALAIDAIINQRDSGIKCIYVAIGQKASTIANVVRKLEEHSALQNT 6229
Query: 226 EVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTV 277
VV ++ E A+ + + +D +I+ D +++ A AY +
Sbjct: 6230 IVVVASASESAALQYLAPYSGCAMGEYFRDRGEDALIIYDDLSKQAVAYRQI 6385
>AE008880 AE006468 |AE008880| Salmonella typhimurium LT2, section 184 of
220 of the complete genome.
Length = 20518
Score = 46.6 bits (109), Expect = 1e-05
Identities = 45/214 (21%), Positives = 89/214 (41%), Gaps = 6/214 (2%)
Frame = -3
Query: 160 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPE----- 214
+V+DL P +G + + GKT+ + + ++IA H + + + E
Sbjct: 11606 KVIDLMCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGVGERTREGNDFY 11427
Query: 215 -EVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARA 273
E+T+ + K +V +EP ++VA + A++ + +DV++ +D+I R A
Sbjct: 11426 HEMTDSNVIDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLLFVDNIYRYTLA 11247
Query: 274 YNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYE 333
V G++ + L + GS+T + + D
Sbjct: 11246 GTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKTGSITSVQAVYVPADDLTDPSPAT 11067
Query: 334 EFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRK 367
F + + LSR+IA ++PA+D S +R+
Sbjct: 11066 TFAHL-DATVVLSRQIASLGIYPAVDPLDSTSRQ 10968
Score = 37.0 bits (84), Expect = 0.011
Identities = 29/123 (23%), Positives = 52/123 (42%), Gaps = 5/123 (4%)
Frame = -2
Query: 160 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVL-----LIDERPE 214
+ +D PIGRGQR LI+ + GKT L + + + C+ + + I
Sbjct: 14031 KAVDSMIPIGRGQRELIIGDRQTGKTALAIDAIINQRDSGIKCIYVAIGQKASTISNVVR 13852
Query: 215 EVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAY 274
++ E L VV +T E A+ + + +D +I+ D +++ A AY
Sbjct: 13851 KLEEHGALANTIVVVATASESAALQYLAPYAGCAMGEYFRDRGEDALIIYDDLSKQAVAY 13672
Query: 275 NTV 277
+
Sbjct: 13671 RQI 13663
>AE012153 AE008922 |AE012153| Xanthomonas campestris pv. campestris
str. ATCC 33913, section 61 of 460 of the complete
genome.
Length = 11990
Score = 41.2 bits (95), Expect = 6e-04
Identities = 53/234 (22%), Positives = 92/234 (39%), Gaps = 14/234 (5%)
Frame = +2
Query: 148 ERGNGSTEDLTA--RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLM 205
E + STE L +V+DL P +G + + GKT+ + + +IA H +
Sbjct: 5915 EDQSSSTELLETGIKVIDLMCPFAKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVF 6094
Query: 206 VLLIDERPE------EVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHK-- 257
+ + E E+ + L K +V +EP ++VA + A+ + K
Sbjct: 6095 AGVGERTREGNDFYHEMKDSNVLDKVAMVYGQMNEPPGNRLRVALTGLTMAEYFRDEKDE 6274
Query: 258 ----KDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSL 313
KDV++ +D+I R A V G++ + L + GS+
Sbjct: 6275 NGKGKDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKSGSI 6454
Query: 314 TIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRK 367
T I + D F + + LSR IA ++PA+D S +R+
Sbjct: 6455 TSIQAVYVPADDLTDPSPATTFAHLDST-VTLSRNIASLGIYPAVDPLDSTSRQ 6613
Score = 37.4 bits (85), Expect = 0.008
Identities = 29/121 (23%), Positives = 52/121 (42%), Gaps = 5/121 (4%)
Frame = +2
Query: 162 LDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVL-----LIDERPEEV 216
+D PIGRGQR L++ + GKT L + + CV + + + ++
Sbjct: 3386 VDAMIPIGRGQRELVIGDRQTGKTALAIDAVINQKGTGIKCVYVAIGQKASTVANIVRKL 3565
Query: 217 TEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNT 276
E L VVA+T E A+ + ++ +D +I+ D +++ A AY
Sbjct: 3566 EENGALAHTVVVAATASESAAMQYISPYAGCTMGEYFMDRGEDALIVYDDLSKQAVAYRQ 3745
Query: 277 V 277
+
Sbjct: 3746 I 3748
>AE012366 AE008922 |AE012366| Xanthomonas campestris pv. campestris
str. ATCC 33913, section 274 of 460 of the complete
genome.
Length = 10585
Score = 28.5 bits (62), Expect = 3.8
Identities = 18/45 (40%), Positives = 25/45 (55%)
Frame = -1
Query: 269 RLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSL 313
R ARA + PA+G+ TGG A+ RP+ GA R+ G +L
Sbjct: 7507 RHARALSQPQPAAGRDRTGG--GCAVCRPRHLAGAVRSPGTGAAL 7379
>AE012207 AE008922 |AE012207| Xanthomonas campestris pv. campestris
str. ATCC 33913, section 115 of 460 of the complete
genome.
Length = 13425
Score = 27.7 bits (60), Expect = 6.5
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Frame = -2
Query: 133 FENLTPLHANSRLRMERGN-GSTEDLTARVLD--LASPIGRGQRGLIVAPPKAG 183
F L LH+ RLRM+R G D T +V +A R G PPK G
Sbjct: 2963 FGQLCMLHSGQRLRMQRRTAGQRSDATIQVRQHVIAVLYRRAHHGRTRPPPKLG 2802
>AE008878 AE006468 |AE008878| Salmonella typhimurium LT2, section 182 of
220 of the complete genome.
Length = 22418
Score = 27.7 bits (60), Expect = 6.5
Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 5/122 (4%)
Frame = -2
Query: 9 TPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIF-GDGVLEILQDGFGFLRS 67
TPV +G N+G +N + + AI +Q G++I+ G+ +D +R
Sbjct: 13018 TPVVMAGMIGSNVGWQNAPYLPVPALFSAIGEQLTAVGDNIWIIPGLCVSREDNHNVMRG 12839
Query: 68 ADSSYLA----GPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDK 123
++ L P +YV P ++ ++T R GE + LL+ + V
Sbjct: 12838 EETQLLGACELSPSSVYVMPGTHCKW-VQTDTQQIHDFRTVMTGELHHLLLRHSLVGAGL 12662
Query: 124 PE 125
PE
Sbjct: 12661 PE 12656
>AE008719 AE006468 |AE008719| Salmonella typhimurium LT2, section 27 of
220 of the complete genome.
Length = 20607
Score = 27.3 bits (59), Expect = 8.5
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +3
Query: 62 FGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTI 97
+G L++ A P + ++P + NL+TGDTI
Sbjct: 12132 YGELQTRPGGVKAQPGSVLLAPRLMALLNLKTGDTI 12239
Database: 3g
Posted date: Sep 25, 2007 8:01 PM
Number of letters in database: 12,243,887
Number of sequences in database: 884
Lambda K H
0.319 0.136 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 884
Number of Hits to DB: 4,477,067
Number of extensions: 57818
Number of successful extensions: 347
Number of sequences better than 10.0: 15
Number of HSP's gapped: 340
Number of HSP's successfully gapped: 18
Length of query: 419
Length of database: 4,081,295
Length adjustment: 96
Effective length of query: 323
Effective length of database: 3,996,431
Effective search space: 1290847213
Effective search space used: 1290847213
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)