BLASTN 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= J01673 J01673.1 E.coli rho gene coding for transcription termination factor. (1260 letters) Database: 3g 884 sequences; 12,243,887 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AE008883 AE006468 |AE008883| Salmonella typhimurium LT2, section... 1737 0.0 embl|AE006229|AE006229 Pasteurella multocida subsp. multocida st... 190 6e-48 AE012498 AE008922 |AE012498| Xanthomonas campestris pv. campestr... 170 5e-42 embl|AE006185|AE006185 Pasteurella multocida subsp. multocida st... 38 0.050 AE008880 AE006468 |AE008880| Salmonella typhimurium LT2, section... 38 0.050 embl|AE006095|AE006095 Pasteurella multocida subsp. multocida st... 36 0.20 embl|AE006190|AE006190 Pasteurella multocida subsp. multocida st... 34 0.77 AE012489 AE008922 |AE012489| Xanthomonas campestris pv. campestr... 34 0.77 AE012356 AE008922 |AE012356| Xanthomonas campestris pv. campestr... 34 0.77 embl|AE006049|AE006049 Pasteurella multocida subsp. multocida st... 32 3.1 embl|AE006042|AE006042 Pasteurella multocida subsp. multocida st... 32 3.1 AE012432 AE008922 |AE012432| Xanthomonas campestris pv. campestr... 32 3.1 AE012358 AE008922 |AE012358| Xanthomonas campestris pv. campestr... 32 3.1 AE012341 AE008922 |AE012341| Xanthomonas campestris pv. campestr... 32 3.1 AE012273 AE008922 |AE012273| Xanthomonas campestris pv. campestr... 32 3.1 AE012184 AE008922 |AE012184| Xanthomonas campestris pv. campestr... 32 3.1 AE008821 AE006468 |AE008821| Salmonella typhimurium LT2, section... 32 3.1 AE008794 AE006468 |AE008794| Salmonella typhimurium LT2, section... 32 3.1 AE008740 AE006468 |AE008740| Salmonella typhimurium LT2, section... 32 3.1 AE008724 AE006468 |AE008724| Salmonella typhimurium LT2, section... 32 3.1 AE008693 AE006468 |AE008693| Salmonella typhimurium LT2, section... 32 3.1 >AE008883 AE006468 |AE008883| Salmonella typhimurium LT2, section 187 of 220 of the complete genome. Length = 20621 Score = 1737 bits (876), Expect = 0.0 Identities = 1164/1260 (92%) Strand = Plus / Plus Query: 1 atgaatcttaccgaattaaagaatacgccggtttctgagctgatcactctcggcgaaaat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 75 atgaatcttaccgaattaaagaatacgccggtttctgagctgatcactctcggcgaaagt 134 Query: 61 atggggctggaaaacctggctcgtatgcgtaagcaggacattatttttgccatcctgaag 120 |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| Sbjct: 135 atggggctggaaaacctggcccgtatgcgcaagcaggacattatttttgccatcctgaag 194 Query: 121 cagcacgcaaagagtggcgaagatatctttggtgatggcgtactggagatattgcaggat 180 |||||||||||||||||||||||||||||||| || || || |||||||||||||||||| Sbjct: 195 cagcacgcaaagagtggcgaagatatctttggcgacggtgtgctggagatattgcaggat 254 Query: 181 ggatttggtttcctccgttccgcagacagctcctacctcgccggtcctgatgacatctac 240 |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| Sbjct: 255 ggatttggtttcctccgttctgcagacagctcctacctcgccggtcctgatgatatctac 314 Query: 241 gtttcccctagccaaatccgccgtttcaacctccgcactggtgataccatctctggtaag 300 |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 315 gtttcccccagccaaatccgccgtttcaacctccgcactggtgataccatttctggtaag 374 Query: 301 attcgcccgccgaaagaaggtgaacgctattttgcgctgctgaaagttaacgaagttaac 360 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 375 attcgcccgccgaaagaaggtgaacgctattttgcgctgttgaaagttaacgaagttaac 434 Query: 361 ttcgacaaacctgaaaacgcccgcaacaaaatcctctttgagaacttaaccccgctgcac 420 | ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 435 tacgacaaaccggaaaacgcccgtaacaaaatcctctttgagaacttaaccccgctgcac 494 Query: 421 gcaaactctcgtctgcgtatggaacgtggtaacggttctactgaagatttaactgctcgc 480 ||||||||||||||||||||||| ||||||||||||||||| ||||| ||||| || ||| Sbjct: 495 gcaaactctcgtctgcgtatggagcgtggtaacggttctaccgaagacttaacggcgcgc 554 Query: 481 gtactggatctggcatcacctatcggtcgtggtcagcgtggtctgattgtggcaccgccg 540 || ||||||||||| || || |||||||| || ||||| ||||||||||| || |||||| Sbjct: 555 gttctggatctggcttcgccgatcggtcgcggccagcgcggtctgattgtcgcgccgccg 614 Query: 541 aaagccggtaaaaccatgctgctgcagaacattgctcagagcattgcttacaaccacccg 600 ||||| |||||||||||||||||||||||||| || |||||||| || || ||||||||| Sbjct: 615 aaagcgggtaaaaccatgctgctgcagaacatcgcgcagagcatcgcgtataaccacccg 674 Query: 601 gattgtgtgctgatggttctgctgatcgacgaacgtccggaagaagtaaccgagatgcag 660 || || ||||||||||| |||||||| |||||||||||||||||||| |||||||||||| Sbjct: 675 gactgcgtgctgatggtgctgctgattgacgaacgtccggaagaagtgaccgagatgcag 734 Query: 661 cgtctggtaaaaggtgaagttgttgcttctacctttgacgaacccgcatctcgccacgtt 720 |||||||| ||||| ||||| ||||||||||||||||||||||| ||||| ||||||||| Sbjct: 735 cgtctggtgaaaggcgaagtggttgcttctacctttgacgaaccggcatcccgccacgtt 794 Query: 721 caggttgcggaaatggtgatcgagaaggccaaacgcctggttgagcacaagaaagacgtt 780 |||||||| |||||||| ||||||||||| || || |||||||| ||||||||||||||| Sbjct: 795 caggttgccgaaatggttatcgagaaggcgaagcgtctggttgaacacaagaaagacgtt 854 Query: 781 atcattctgctcgactccatcactcgtctggcgcgcgcttacaacaccgttgttccggcg 840 ||||| ||||||||||||||||| |||||||||||||| ||||||||||| || ||||| Sbjct: 855 atcatcctgctcgactccatcacccgtctggcgcgcgcctacaacaccgtggtgccggct 914 Query: 841 tcaggtaaagtgttgaccggtggtgtggatgccaacgccctgcatcgtccgaaacgcttc 900 || |||||||| ||||||||||||||||| || |||||||||||||||||||| || ||| Sbjct: 915 tccggtaaagtattgaccggtggtgtggacgctaacgccctgcatcgtccgaagcgtttc 974 Query: 901 tttggtgcggcgcgtaacgtggaagagggcggcagcctgaccattatcgcgacggcgctt 960 || || |||||||||||||||||||||||||| |||||||| || |||||||||||||| Sbjct: 975 ttcggcgcggcgcgtaacgtggaagagggcggtagcctgactatcatcgcgacggcgcta 1034 Query: 961 atcgataccggttctaaaatggacgaagttatctacgaagagtttaaaggtacaggcaac 1020 |||||||||||||| || |||||||||||||||||||||||||||||||| || || ||| Sbjct: 1035 atcgataccggttccaagatggacgaagttatctacgaagagtttaaaggcaccggtaac 1094 Query: 1021 atggaactgcacctctctcgtaagatcgctgaaaaacgcgtcttcccggctatcgactac 1080 ||||| ||||| ||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct: 1095 atggagctgcatctctcgcgtaagatcgctgaaaaacgtgtcttcccggctatcgactac 1154 Query: 1081 aaccgttctggtacccgtaaagaagagctgctcacgactcaggaagaactgcagaaaatg 1140 |||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct: 1155 aaccgttccggtacccgtaaagaagagctgctcaccactcaggaagagctgcagaaaatg 1214 Query: 1141 tggatcctgcgcaaaatcattcacccgatgggcgaaatcgatgcaatggaattcctcatt 1200 ||||||||||| |||||||| || |||||||| ||||| || || ||||||||||||||| Sbjct: 1215 tggatcctgcgtaaaatcatccatccgatgggtgaaattgacgcgatggaattcctcatt 1274 Query: 1201 aataaactggcaatgaccaagaccaatgacgatttcttcgaaatgatgaaacgctcataa 1260 || |||||||| |||||||| || |||||||| || ||||| |||||||| ||||||||| Sbjct: 1275 aacaaactggcgatgaccaaaactaatgacgactttttcgagatgatgaagcgctcataa 1334 >embl|AE006229|AE006229 Pasteurella multocida subsp. multocida str. Pm70 section 196 of 204 of the complete genome. Length = 11895 Score = 190 bits (96), Expect = 6e-48 Identities = 543/692 (78%) Strand = Plus / Minus Query: 517 cgtggtctgattgtggcaccgccgaaagccggtaaaaccatgctgctgcagaacattgct 576 |||||| |||||||||| || || |||||||||||||||||| || | || ||||| || Sbjct: 3764 cgtggtttgattgtggcgccacccaaagccggtaaaaccatgttgttacaaaacatcgca 3705 Query: 577 cagagcattgcttacaaccacccggattgtgtgctgatggttctgctgatcgacgaacgt 636 || |||||| ||||||| |||| || |||| |||| || | | || ||||||||| Sbjct: 3704 caaagcattacttacaattaccctgaatgtgaattgatcgtgttattaattgacgaacgt 3645 Query: 637 ccggaagaagtaaccgagatgcagcgtctggtaaaaggtgaagttgttgcttctaccttt 696 || |||||||| || || ||||| ||| ||| ||||||||||| ||||||| |||||| Sbjct: 3644 ccagaagaagtgactgaaatgcaacgttcggttaaaggtgaagtgattgcttcgaccttt 3585 Query: 697 gacgaacccgcatctcgccacgttcaggttgcggaaatggtgatcgagaaggccaaacgc 756 || ||||||||| ||||||| || || || || ||||||||||| ||||| || ||||| Sbjct: 3584 gatgaacccgcaactcgccatgtacaagtcgctgaaatggtgattgagaaagcaaaacgt 3525 Query: 757 ctggttgagcacaagaaagacgttatcattctgctcgactccatcactcgtctggcgcgc 816 |||||||| || |||||||| | || || || || || || || ||| |||| || Sbjct: 3524 tctgttgagcataaaaaagacgtggtgatcctccttgattcaattacacgtttggcacgt 3465 Query: 817 gcttacaacaccgttgttccggcgtcaggtaaagtgttgaccggtggtgtggatgccaac 876 ||||| |||||||| |||||| ||||| ||| | | | |||||||||||||| || Sbjct: 3464 gcttataacaccgtcactccggcatcaggcaaaattctttctggtggtgtggatgctaat 3405 Query: 877 gccctgcatcgtccgaaacgcttctttggtgcggcgcgtaacgtggaagagggcggcagc 936 || | || ||||| ||||| ||||| ||||| || ||||| || ||||| || || ||| Sbjct: 3404 gcgttacaccgtccaaaacgtttcttcggtgcagcacgtaatgtcgaagaaggtggtagc 3345 Query: 937 ctgaccattatcgcgacggcgcttatcgataccggttctaaaatggacgaagttatctac 996 | ||||||||||| || || || | ||||| || || ||||||||||||||||||| Sbjct: 3344 ttaaccattatcgccacagcactcgtagatacgggctcaaaaatggacgaagttatcttt 3285 Query: 997 gaagagtttaaaggtacaggcaacatggaactgcacctctctcgtaagatcgctgaaaaa 1056 |||||||| ||||| || || || |||||| |||| || || || || || || |||||| Sbjct: 3284 gaagagttcaaaggaaccggtaatatggaattgcatctttcgcgcaaaattgccgaaaaa 3225 Query: 1057 cgcgtcttcccggctatcgactacaaccgttctggtacccgtaaagaagagctgctcacg 1116 ||||| ||||| || || |||| ||||||||| || |||||||||||||| | ||||| Sbjct: 3224 cgcgttttcccagccattgacttcaaccgttcaggcacccgtaaagaagatttactcaca 3165 Query: 1117 actcaggaagaactgcagaaaatgtggatcctgcgcaaaatcattcacccgatgggcgaa 1176 | | || ||||| || |||||||||||||| || |||||| | || || ||||||||| Sbjct: 3164 agcccagatgaactacaaaaaatgtggatcctacgtaaaatcttacatccaatgggcgaa 3105 Query: 1177 atcgatgcaatggaattcctcattaataaact 1208 | || || ||||||||||||||| ||||||| Sbjct: 3104 gtggaagcgatggaattcctcattgataaact 3073 Score = 77.8 bits (39), Expect = 6e-14 Identities = 129/159 (81%) Strand = Plus / Minus Query: 178 gatggatttggtttcctccgttccgcagacagctcctacctcgccggtcctgatgacatc 237 ||||| || |||||| | || ||||| ||||| |||||||| |||||||||||||| ||| Sbjct: 4103 gatggtttcggtttcttacgctccgctgacagttcctaccttgccggtcctgatgatatc 4044 Query: 238 tacgtttcccctagccaaatccgccgtttcaacctccgcactggtgataccatctctggt 297 || ||||| || || |||||||| ||||||||| | | || ||||||| || ||| Sbjct: 4043 tatgtttcaccaagtcaaatccgtcgtttcaacttacaaacaggtgataaaattgaaggt 3984 Query: 298 aagattcgcccgccgaaagaaggtgaacgctattttgcg 336 || ||||| || || |||||||||||||| ||||||||| Sbjct: 3983 aaaattcgtccacctaaagaaggtgaacgttattttgcg 3945 >AE012498 AE008922 |AE012498| Xanthomonas campestris pv. campestris str. ATCC 33913, section 406 of 460 of the complete genome. Length = 12898 Score = 170 bits (86), Expect = 5e-42 Identities = 254/310 (81%) Strand = Plus / Plus Query: 712 cgccacgttcaggttgcggaaatggtgatcgagaaggccaaacgcctggttgagcacaag 771 |||||||| |||||||| || ||||||||||| |||||| |||||||| ||||||||| Sbjct: 8285 cgccacgtgcaggttgccgagatggtgatcgaacgggccaagcgcctggtcgagcacaag 8344 Query: 772 aaagacgttatcattctgctcgactccatcactcgtctggcgcgcgcttacaacaccgtt 831 || ||||| | || ||||| ||||||||||| |||||||| ||||| ||||||| ||| Sbjct: 8345 aaggacgtggtgatcctgctggactccatcacccgtctggcacgcgcctacaacaacgtg 8404 Query: 832 gttccggcgtcaggtaaagtgttgaccggtggtgtggatgccaacgccctgcatcgtccg 891 || ||| || || || ||| | ||||||||||||||||||||||| |||||||| ||| Sbjct: 8405 gtgccgagctccggcaaggtgctcaccggtggtgtggatgccaacgcgctgcatcgcccg 8464 Query: 892 aaacgcttctttggtgcggcgcgtaacgtggaagagggcggcagcctgaccattatcgcg 951 || |||||||| |||||||| |||||||||||||| ||||| |||||||| || || Sbjct: 8465 aagcgcttcttcggtgcggcacgtaacgtggaagaaggcggttcgctgaccatcattgcc 8524 Query: 952 acggcgcttatcgataccggttctaaaatggacgaagttatctacgaagagtttaaaggt 1011 |||||||| | || ||||| || |||||||| || |||||||||||||| || || Sbjct: 8525 acggcgctggtggaaaccggcagcaagatggacgaggtgatctacgaagagttcaagggc 8584 Query: 1012 acaggcaaca 1021 || ||||||| Sbjct: 8585 accggcaaca 8594 Score = 48.1 bits (24), Expect = 5e-05 Identities = 39/44 (88%) Strand = Plus / Plus Query: 619 ctgctgatcgacgaacgtccggaagaagtaaccgagatgcagcg 662 ||||| |||||||| || ||||||||||| ||||| |||||||| Sbjct: 8192 ctgctcatcgacgagcgcccggaagaagtgaccgaaatgcagcg 8235 >embl|AE006185|AE006185 Pasteurella multocida subsp. multocida str. Pm70 section 152 of 204 of the complete genome. Length = 10229 Score = 38.2 bits (19), Expect = 0.050 Identities = 19/19 (100%) Strand = Plus / Plus Query: 502 atcggtcgtggtcagcgtg 520 ||||||||||||||||||| Sbjct: 6041 atcggtcgtggtcagcgtg 6059 >AE008880 AE006468 |AE008880| Salmonella typhimurium LT2, section 184 of 220 of the complete genome. Length = 20518 Score = 38.2 bits (19), Expect = 0.050 Identities = 19/19 (100%) Strand = Plus / Minus Query: 502 atcggtcgtggtcagcgtg 520 ||||||||||||||||||| Sbjct: 14007 atcggtcgtggtcagcgtg 13989 >embl|AE006095|AE006095 Pasteurella multocida subsp. multocida str. Pm70 section 62 of 204 of the complete genome. Length = 11249 Score = 36.2 bits (18), Expect = 0.20 Identities = 18/18 (100%) Strand = Plus / Plus Query: 19 aagaatacgccggtttct 36 |||||||||||||||||| Sbjct: 6444 aagaatacgccggtttct 6461 >embl|AE006190|AE006190 Pasteurella multocida subsp. multocida str. Pm70 section 157 of 204 of the complete genome. Length = 10728 Score = 34.2 bits (17), Expect = 0.77 Identities = 17/17 (100%) Strand = Plus / Plus Query: 323 aacgctattttgcgctg 339 ||||||||||||||||| Sbjct: 362 aacgctattttgcgctg 378 >AE012489 AE008922 |AE012489| Xanthomonas campestris pv. campestris str. ATCC 33913, section 397 of 460 of the complete genome. Length = 10504 Score = 34.2 bits (17), Expect = 0.77 Identities = 20/21 (95%) Strand = Plus / Minus Query: 919 gtggaagagggcggcagcctg 939 ||||||||||||| ||||||| Sbjct: 7005 gtggaagagggcgccagcctg 6985 >AE012356 AE008922 |AE012356| Xanthomonas campestris pv. campestris str. ATCC 33913, section 264 of 460 of the complete genome. Length = 10623 Score = 34.2 bits (17), Expect = 0.77 Identities = 20/21 (95%) Strand = Plus / Minus Query: 604 tgtgtgctgatggttctgctg 624 |||||||||||||| |||||| Sbjct: 6682 tgtgtgctgatggtgctgctg 6662 >embl|AE006049|AE006049 Pasteurella multocida subsp. multocida str. Pm70 section 16 of 204 of the complete genome. Length = 11584 Score = 32.2 bits (16), Expect = 3.1 Identities = 16/16 (100%) Strand = Plus / Plus Query: 764 agcacaagaaagacgt 779 |||||||||||||||| Sbjct: 1450 agcacaagaaagacgt 1465 >embl|AE006042|AE006042 Pasteurella multocida subsp. multocida str. Pm70 section 9 of 204 of the complete genome. Length = 12736 Score = 32.2 bits (16), Expect = 3.1 Identities = 16/16 (100%) Strand = Plus / Plus Query: 711 tcgccacgttcaggtt 726 |||||||||||||||| Sbjct: 2278 tcgccacgttcaggtt 2293 >AE012432 AE008922 |AE012432| Xanthomonas campestris pv. campestris str. ATCC 33913, section 340 of 460 of the complete genome. Length = 10097 Score = 32.2 bits (16), Expect = 3.1 Identities = 19/20 (95%) Strand = Plus / Plus Query: 1071 tatcgactacaaccgttctg 1090 ||||||| |||||||||||| Sbjct: 3684 tatcgacaacaaccgttctg 3703 >AE012358 AE008922 |AE012358| Xanthomonas campestris pv. campestris str. ATCC 33913, section 266 of 460 of the complete genome. Length = 11304 Score = 32.2 bits (16), Expect = 3.1 Identities = 22/24 (91%) Strand = Plus / Plus Query: 360 cttcgacaaacctgaaaacgcccg 383 ||||| ||||| |||||||||||| Sbjct: 913 cttcgccaaacatgaaaacgcccg 936 >AE012341 AE008922 |AE012341| Xanthomonas campestris pv. campestris str. ATCC 33913, section 249 of 460 of the complete genome. Length = 10478 Score = 32.2 bits (16), Expect = 3.1 Identities = 16/16 (100%) Strand = Plus / Plus Query: 1204 aaactggcaatgacca 1219 |||||||||||||||| Sbjct: 8845 aaactggcaatgacca 8860 >AE012273 AE008922 |AE012273| Xanthomonas campestris pv. campestris str. ATCC 33913, section 181 of 460 of the complete genome. Length = 10327 Score = 32.2 bits (16), Expect = 3.1 Identities = 16/16 (100%) Strand = Plus / Plus Query: 825 caccgttgttccggcg 840 |||||||||||||||| Sbjct: 248 caccgttgttccggcg 263 >AE012184 AE008922 |AE012184| Xanthomonas campestris pv. campestris str. ATCC 33913, section 92 of 460 of the complete genome. Length = 10695 Score = 32.2 bits (16), Expect = 3.1 Identities = 16/16 (100%) Strand = Plus / Minus Query: 803 ctcgtctggcgcgcgc 818 |||||||||||||||| Sbjct: 1230 ctcgtctggcgcgcgc 1215 >AE008821 AE006468 |AE008821| Salmonella typhimurium LT2, section 125 of 220 of the complete genome. Length = 21387 Score = 32.2 bits (16), Expect = 3.1 Identities = 16/16 (100%) Strand = Plus / Minus Query: 67 ctggaaaacctggctc 82 |||||||||||||||| Sbjct: 13502 ctggaaaacctggctc 13487 >AE008794 AE006468 |AE008794| Salmonella typhimurium LT2, section 98 of 220 of the complete genome. Length = 26591 Score = 32.2 bits (16), Expect = 3.1 Identities = 16/16 (100%) Strand = Plus / Minus Query: 830 ttgttccggcgtcagg 845 |||||||||||||||| Sbjct: 22638 ttgttccggcgtcagg 22623 >AE008740 AE006468 |AE008740| Salmonella typhimurium LT2, section 46 of 220 of the complete genome. Length = 20538 Score = 32.2 bits (16), Expect = 3.1 Identities = 16/16 (100%) Strand = Plus / Minus Query: 96 ggacattatttttgcc 111 |||||||||||||||| Sbjct: 16240 ggacattatttttgcc 16225 >AE008724 AE006468 |AE008724| Salmonella typhimurium LT2, section 32 of 220 of the complete genome. Length = 26720 Score = 32.2 bits (16), Expect = 3.1 Identities = 16/16 (100%) Strand = Plus / Plus Query: 834 tccggcgtcaggtaaa 849 |||||||||||||||| Sbjct: 8675 tccggcgtcaggtaaa 8690 >AE008693 AE006468 |AE008693| Salmonella typhimurium LT2, section 1 of 220 of the complete genome. Length = 20038 Score = 32.2 bits (16), Expect = 3.1 Identities = 16/16 (100%) Strand = Plus / Minus Query: 940 accattatcgcgacgg 955 |||||||||||||||| Sbjct: 17168 accattatcgcgacgg 17153 Database: 3g Posted date: Sep 25, 2007 8:01 PM Number of letters in database: 12,243,887 Number of sequences in database: 884 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 884 Number of Hits to DB: 169,010 Number of extensions: 9483 Number of successful extensions: 71 Number of sequences better than 10.0: 21 Number of HSP's gapped: 70 Number of HSP's successfully gapped: 30 Length of query: 1260 Length of database: 12,243,887 Length adjustment: 17 Effective length of query: 1243 Effective length of database: 12,228,859 Effective search space: 15200471737 Effective search space used: 15200471737 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 15 (30.2 bits) S2: 16 (32.2 bits)