PAL2NAL output
              M   N   L   T   E   L   K   N   T   P   V   S   E   L   I   T   L   G   E   N
Rho_ecoli     atg aat ctt acc gaa tta aag aat acg ccg gtt tct gag ctg atc act ctc ggc gaa aat
              M   N   L   T   E   L   K   Q   K   P   I   A   E   L   L   E   M   S   D   A
Rho_pseae     atg aat ctg acc gaa ctc aag caa aag ccg att gcc gaa ctg ctg gaa atg tcc gat gcc

              M   G   L   E   N   L   A   R   M   R   K   Q   D   I   I   F   A   I   L   K
Rho_ecoli     atg ggg ctg gaa aac ctg gct cgt atg cgt aag cag gac att att ttt gcc atc ctg aag
              M   G   L   E   N   M   A   R   S   R   K   Q   D   I   I   F   A   L   L   K
Rho_pseae     atg ggc ctg gaa aac atg gcc cgt tcg cgc aag cag gac atc atc ttc gcc ctg ctg aag

              Q   H   A   K   S   G   E   D   I   F   G   D   G   V   L   E   I   L   Q   D
Rho_ecoli     cag cac gca aag agt ggc gaa gat atc ttt ggt gat ggc gta ctg gag ata ttg cag gat
              K   H   A   K   S   G   E   E   I   S   G   D   G   V   L   E   I   L   Q   D
Rho_pseae     aag cac gcg aaa agt ggt gaa gag atc tcc ggc gat ggc gtg ctg gag att ctt cag gac

              G   F   G   F   L   R   S   A   D   S   S   Y   L   A   G   P   D   D   I   Y
Rho_ecoli     gga ttt ggt ttc ctc cgt tcc gca gac agc tcc tac ctc gcc ggt cct gat gac atc tac
              G   F   G   F   L   R   S   A   D   S   S   Y   L   A   G   P   D   D   I   Y
Rho_pseae     ggc ttc ggc ttc ctg cgc tcc gcc gac tct tcc tac ctg gcc ggc ccc gac gac atc tat

              V   S   P   S   Q   I   R   R   F   N   L   R   T   G   D   T   I   S   G   K
Rho_ecoli     gtt tcc cct agc caa atc cgc cgt ttc aac ctc cgc act ggt gat acc atc tct ggt aag
              V   S   P   S   Q   I   R   R   F   N   L   R   T   G   D   T   I   I   G   K
Rho_pseae     gtc tcg ccg agc cag atc cgg cgc ttc aac ctg cgc acg ggc gac acc atc atc ggc aag

              I   R   P   P   K   E   G   E   R   Y   F   A   L   L   K   V   N   E   V   N
Rho_ecoli     att cgc ccg ccg aaa gaa ggt gaa cgc tat ttt gcg ctg ctg aaa gtt aac gaa gtt aac
              I   R   P   P   K   E   G   E   R   Y   F   A   L   L   K   V   D   S   I   N
Rho_pseae     atc cgg ccg ccg aaa gag ggc gag cgt tac ttc gcc ctg ctc aag gtc gac tcg atc aac

              F   D   K   P   E   N   A   R   N   K   I   L   F   E   N   L   T   P   L   H
Rho_ecoli     ttc gac aaa cct gaa aac gcc cgc aac aaa atc ctc ttt gag aac tta acc ccg ctg cac
              F   D   R   P   E   N   A   K   N   K   I   L   F   E   N   L   T   P   L   F
Rho_pseae     ttc gat cgt ccg gag aat gcg aag aac aag att ctc ttc gag aac ctg acg ccg ctg ttc

              A   N   S   R   L   R   M   E   R   G   N   G   S   T   E   D   L   T   A   R
Rho_ecoli     gca aac tct cgt ctg cgt atg gaa cgt ggt aac ggt tct act gaa gat tta act gct cgc
              P   N   E   R   M   K   M   E   A   G   N   G   S   T   E   D   L   T   G   R
Rho_pseae     ccc aac gag cgg atg aag atg gaa gcc ggc aac ggc tcc acc gaa gac ctg acc ggc cgc

              V   L   D   L   A   S   P   I   G   R   G   Q   R   G   L   I   V   A   P   P
Rho_ecoli     gta ctg gat ctg gca tca cct atc ggt cgt ggt cag cgt ggt ctg att gtg gca ccg ccg
              V   I   D   L   C   A   P   I   G   K   G   Q   R   G   L   I   V   A   P   P
Rho_pseae     gtc atc gat ctc tgc gcg ccg atc ggc aag ggc cag cgc ggc ctg atc gtg gcg ccg ccg

              K   A   G   K   T   M   L   L   Q   N   I   A   Q   S   I   A   Y   N   H   P
Rho_ecoli     aaa gcc ggt aaa acc atg ctg ctg cag aac att gct cag agc att gct tac aac cac ccg
              K   A   G   K   T   I   M   L   Q   N   I   A   S   N   I   T   R   N   N   P
Rho_pseae     aag gcg ggc aag acc atc atg ctg cag aac atc gcc agc aac atc acc cgc aac aac ccc

              D   C   V   L   M   V   L   L   I   D   E   R   P   E   E   V   T   E   M   Q
Rho_ecoli     gat tgt gtg ctg atg gtt ctg ctg atc gac gaa cgt ccg gaa gaa gta acc gag atg cag
              E   C   H   L   I   V   L   L   I   D   E   R   P   E   E   V   T   E   M   Q
Rho_pseae     gaa tgc cac ctg atc gta ctg ctg atc gac gag cgc cct gag gaa gtg acc gaa atg cag

              R   L   V   K   G   E   V   V   A   S   T   F   D   E   P   A   S   R   H   V
Rho_ecoli     cgt ctg gta aaa ggt gaa gtt gtt gct tct acc ttt gac gaa ccc gca tct cgc cac gtt
              R   T   V   R   G   E   V   V   A   S   T   F   D   E   P   P   T   R   H   V
Rho_pseae     cgc acc gtg cgc ggc gaa gtg gtc gcc tcg acc ttt gac gaa ccg ccg acc cgt cac gta

              Q   V   A   E   M   V   I   E   K   A   K   R   L   V   E   H   K   K   D   V
Rho_ecoli     cag gtt gcg gaa atg gtg atc gag aag gcc aaa cgc ctg gtt gag cac aag aaa gac gtt
              Q   V   A   E   M   V   I   E   K   A   K   R   L   V   E   H   K   K   D   V
Rho_pseae     cag gtc gcc gag atg gtg atc gag aag gcc aag cgc ctg gtc gag cac aag aag gac gtg

              I   I   L   L   D   S   I   T   R   L   A   R   A   Y   N   T   V   V   P   A
Rho_ecoli     atc att ctg ctc gac tcc atc act cgt ctg gcg cgc gct tac aac acc gtt gtt ccg gcg
              V   I   L   L   D   S   I   T   R   L   A   R   A   Y   N   T   V   I   P   S
Rho_pseae     gtc atc ctg ctc gac tcc atc acc cgt ctg gcg cgg gcc tac aac acc gtg atc ccc agc

              S   G   K   V   L   T   G   G   V   D   A   N   A   L   H   R   P   K   R   F
Rho_ecoli     tca ggt aaa gtg ttg acc ggt ggt gtg gat gcc aac gcc ctg cat cgt ccg aaa cgc ttc
              S   G   K   V   L   T   G   G   V   D   A   H   A   L   E   K   P   K   R   F
Rho_pseae     tcc ggc aag gtg ctc acc ggc ggt gtc gac gcc cat gcc ctg gag aag ccg aag cgc ttc

              F   G   A   A   R   N   V   E   E   G   G   S   L   T   I   I   A   T   A   L
Rho_ecoli     ttt ggt gcg gcg cgt aac gtg gaa gag ggc ggc agc ctg acc att atc gcg acg gcg ctt
              F   G   A   A   R   N   I   E   E   G   G   S   L   T   I   L   A   T   A   L
Rho_pseae     ttc ggc gcc gcg cgg aac atc gaa gag ggc ggt tct ctt acg att ctc gcc acg gcg ttg

              I   D   T   G   S   K   M   D   E   V   I   Y   E   E   F   K   G   T   G   N
Rho_ecoli     atc gat acc ggt tct aaa atg gac gaa gtt atc tac gaa gag ttt aaa ggt aca ggc aac
              V   E   T   G   S   K   M   D   E   V   I   Y   E   E   F   K   G   T   G   N
Rho_pseae     gtg gaa acc ggc tcg aag atg gac gag gtg atc tac gag gaa ttc aag ggt acc ggc aac

              M   E   L   H   L   S   R   K   I   A   E   K   R   V   F   P   A   I   D   Y
Rho_ecoli     atg gaa ctg cac ctc tct cgt aag atc gct gaa aaa cgc gtc ttc ccg gct atc gac tac
              M   E   L   P   L   D   R   K   I   A   E   K   R   V   F   P   A   I   N   I
Rho_pseae     atg gaa ctc cca ttg gat cgc aag atc gcc gag aag cgc gtg ttc ccg gcc atc aac atc

              N   R   S   G   T   R   K   E   E   L   L   T   T   Q   E   E   L   Q   K   M
Rho_ecoli     aac cgt tct ggt acc cgt aaa gaa gag ctg ctc acg act cag gaa gaa ctg cag aaa atg
              N   R   S   G   T   R   R   E   E   L   L   T   S   E   D   E   L   Q   R   M
Rho_pseae     aac cgt tcg ggt acc cgc cgc gaa gag ctg ctg acc agc gag gac gag ctc cag cgc atg

              W   I   L   R   K   I   I   H   P   M   G   E   I   D   A   M   E   F   L   I
Rho_ecoli     tgg atc ctg cgc aaa atc att cac ccg atg ggc gaa atc gat gca atg gaa ttc ctc att
              W   I   L   R   K   I   L   H   P   M   D   E   I   S   A   I   E   F   L   I
Rho_pseae     tgg atc ctg cgc aag atc ctg cac ccg atg gac gag atc tcc gcg atc gaa ttc ctc atc

              N   K   L   A   M   T   K   T   N   D   D   F   F   E   M   M   K   R   S
Rho_ecoli     aat aaa ctg gca atg acc aag acc aat gac gat ttc ttc gaa atg atg aaa cgc tca
              D   K   L   K   Q   T   K   T   N   D   E   F   F   D   S   M   K   R   K
Rho_pseae     gac aag ctc aag cag acc aag acc aac gat gag ttc ttc gat tcg atg aaa cgg aag