RID: 09UAGFE7013 Job Title:RNA-directed RNA polymerase nsp12 P0C6Y4 4101..5027 Program: BLASTP Query: RNA-directed RNA polymerase nsp12 P0C6Y4 4101..5027 ID: lcl|Query_3711374(amino acid) Length: 927 Database: swissprot Non-redundant UniProtKB/SwissProt sequences Sequences producing significant alignments: Scientific Common Max Total Query E Per. Acc. Description Name Name Taxid Score Score cover Value Ident Len Accession RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Porcine epid... NA 229032 1943 1943 100% 0.0 100.00 6781 P0C6Y4.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Scotophilus ... NA 693999 1746 1746 100% 0.0 87.27 6793 P0C6W0.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Human corona... NA 277944 1577 1577 100% 0.0 79.29 6729 P0C6X5.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Human corona... NA 11137 1549 1549 100% 0.0 77.24 6758 P0C6X1.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Porcine tran... NA 11151 1492 1492 100% 0.0 75.73 6684 P0C6Y5.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Feline infec... NA 33734 1466 1466 100% 0.0 74.65 6709 Q98VG9.2 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Tylonycteris... NA 694007 1183 1183 100% 0.0 60.32 7119 P0C6W3.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Bat coronavi... NA 389230 1179 1179 100% 0.0 60.11 7126 P0C6W1.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Severe acute... NA 2697049 1175 1175 100% 0.0 59.91 7096 P0DTD1.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Bat SARS cor... NA 442736 1174 1174 99% 0.0 59.65 7067 P0C6W2.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Pipistrellus... NA 694008 1172 1172 100% 0.0 59.68 7182 P0C6W4.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Severe acute... NA 694009 1170 1170 99% 0.0 59.55 7073 P0C6X7.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Bat CoV 279/... NA 389167 1169 1169 99% 0.0 59.55 7079 P0C6V9.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Bat SARS CoV... NA 349344 1168 1168 99% 0.0 59.44 7071 P0C6W6.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Rousettus ba... NA 694006 1167 1167 100% 0.0 59.27 6930 P0C6W5.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Betacoronavi... NA 1263720 1150 1150 100% 0.0 59.14 7078 K9N7C7.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Bovine respi... NA 233264 1144 1144 100% 0.0 59.16 7094 P0C6W8.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Bovine enter... NA 233262 1144 1144 100% 0.0 59.16 7094 P0C6W7.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Human corona... NA 31631 1143 1143 100% 0.0 59.27 7095 P0C6X6.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Bovine coron... NA 11133 1141 1141 100% 0.0 59.06 7059 P0C6X0.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Murine hepat... NA 11142 1141 1141 100% 0.0 58.20 7176 P0C6X9.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Bovine coron... NA 11132 1141 1141 100% 0.0 59.06 7094 P0C6W9.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Murine hepat... NA 76344 1137 1137 100% 0.0 57.98 7124 P0C6X8.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Murine hepat... NA 11144 1127 1127 100% 0.0 57.66 7180 P0C6Y0.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Human corona... NA 443240 1127 1127 100% 0.0 58.24 7152 P0C6X3.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Human corona... NA 443239 1126 1126 100% 0.0 58.03 7182 P0C6X2.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Human corona... NA 443241 1126 1126 100% 0.0 58.03 7132 P0C6X4.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Avian infect... NA 11122 1125 1125 100% 0.0 58.83 6629 P0C6Y1.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Avian infect... NA 160235 1125 1125 100% 0.0 58.83 6629 P0C6Y2.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Avian infect... NA 11127 1119 1119 100% 0.0 58.25 6631 P0C6Y3.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Rat coronavi... NA 33740 453 453 33% 3e-152 67.43 307 Q9WQ77.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Turkey coron... NA 231430 431 431 33% 1e-143 65.47 306 Q9WQ76.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... White bream ... NA 766180 126 126 56% 6e-28 26.42 6872 Q008X6.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Berne virus NA 11156 117 117 60% 4e-25 23.32 6857 P0C6V7.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Breda virus ... NA 360393 108 108 41% 2e-22 25.26 6733 P0C6V8.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Alphamesoniv... NA 1552985 100 100 43% 5e-20 25.93 5088 F8RL29.1 RecName: Full=Replicase polyprotein 1ab; AltName: Full=ORF1ab... PRRSV 16244B NA 300561 52.8 52.8 27% 1e-05 24.81 3961 Q9YN02.3 RecName: Full=Replicase polyprotein 1ab; AltName: Full=ORF1ab... PRRSV VR2332 NA 300559 52.4 52.4 27% 2e-05 24.81 3960 Q9WJB2.2 RecName: Full=Replicase polyprotein 1ab; AltName: Full=ORF1ab... PRRSV HB-1(s... NA 300563 52.4 52.4 27% 2e-05 24.42 3961 Q8B912.3 RecName: Full=Replicase polyprotein 1ab; AltName: Full=ORF1ab... Porcine repr... NA 28344 51.6 51.6 27% 4e-05 24.42 3931 A6YQT5.2 RecName: Full=Genome polyprotein; Contains: RecName:... Watermelon m... NA 148360 47.8 47.8 27% 5e-04 22.55 1017 P18478.3 RecName: Full=Replicase polyprotein 1ab; AltName: Full=ORF1ab... Simian hemor... NA 38143 43.9 43.9 22% 0.009 23.33 3595 Q68772.4 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1... Zucchini yel... NA 117128 42.0 42.0 17% 0.034 25.42 3080 P18479.2 RecName: Full=Replicase polyprotein 1ab; AltName: Full=ORF1ab... PRRSV SD 01-08 NA 857306 41.6 41.6 22% 0.040 25.35 3838 A0MD28.2 RecName: Full=Replicase polyprotein 1ab; AltName: Full=ORF1ab... Lelystad virus NA 11049 41.6 41.6 19% 0.047 24.72 3855 Q04561.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1... Peanut mottl... NA 103926 41.2 41.2 14% 0.047 30.61 3099 O56075.1 Alignments: >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Papain-like protease nsp3; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p14; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; AltName: Full=p66; AltName: Full=p66-HEL; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; AltName: Full=Non-structural protein 14; Short=nsp14; AltName: Full=Proofreading exoribonuclease nsp14; Short=ExoN; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=Non-structural protein 15; Short=nsp15; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=Non-structural protein 16; Short=nsp16 [Porcine epidemic diarrhea virus CV777] Sequence ID: P0C6Y4.1 Length: 6781 Range 1: 4101 to 5027 Score:1943 bits(5033), Expect:0.0, Method:Compositional matrix adjust., Identities:927/927(100%), Positives:927/927(100%), Gaps:0/927(0%) Query 1 STDMAYLNRVRGSSAARLEPCNGTDTQHVYRAFDIYNKDVACLGKFLKVNCVRLKNLDKH 60 STDMAYLNRVRGSSAARLEPCNGTDTQHVYRAFDIYNKDVACLGKFLKVNCVRLKNLDKH Sbjct 4101 STDMAYLNRVRGSSAARLEPCNGTDTQHVYRAFDIYNKDVACLGKFLKVNCVRLKNLDKH 4160 Query 61 DAFYVVKRCTKSAMEHEQSIYSRLEKCGAIAEHDFFTWKDGRAIYGNVCRKDLTEYTMMD 120 DAFYVVKRCTKSAMEHEQSIYSRLEKCGAIAEHDFFTWKDGRAIYGNVCRKDLTEYTMMD Sbjct 4161 DAFYVVKRCTKSAMEHEQSIYSRLEKCGAIAEHDFFTWKDGRAIYGNVCRKDLTEYTMMD 4220 Query 121 LCYALRNFDENNCDVLKSILIKVGACEESYFNNKVWFDPVENEDIHRVYALLGTIVARAM 180 LCYALRNFDENNCDVLKSILIKVGACEESYFNNKVWFDPVENEDIHRVYALLGTIVARAM Sbjct 4221 LCYALRNFDENNCDVLKSILIKVGACEESYFNNKVWFDPVENEDIHRVYALLGTIVARAM 4280 Query 181 LKCVKFCDAMVEQGIVGVVTLDNQDLNGDFYDFGDFTCSIKGMGVPICTSYYSYMMPVMG 240 LKCVKFCDAMVEQGIVGVVTLDNQDLNGDFYDFGDFTCSIKGMGVPICTSYYSYMMPVMG Sbjct 4281 LKCVKFCDAMVEQGIVGVVTLDNQDLNGDFYDFGDFTCSIKGMGVPICTSYYSYMMPVMG 4340 Query 241 MTNCLASECFVKSDIFGEDFKSYDLLEYDFTEHKTALFNKYFKYWGLQYHPNCVDCSDEQ 300 MTNCLASECFVKSDIFGEDFKSYDLLEYDFTEHKTALFNKYFKYWGLQYHPNCVDCSDEQ Sbjct 4341 MTNCLASECFVKSDIFGEDFKSYDLLEYDFTEHKTALFNKYFKYWGLQYHPNCVDCSDEQ 4400 Query 301 CIVHCANFNTLFSTTIPITAFGPLCRKCWIDGVPLVTTAGYHFKQLGIVWNNDLNLHSSR 360 CIVHCANFNTLFSTTIPITAFGPLCRKCWIDGVPLVTTAGYHFKQLGIVWNNDLNLHSSR Sbjct 4401 CIVHCANFNTLFSTTIPITAFGPLCRKCWIDGVPLVTTAGYHFKQLGIVWNNDLNLHSSR 4460 Query 361 LSINELLQFCSDPALLIASSPALVDQRTVCFSVAALGTGMTNQTVKPGHFNKEFYDFLLE 420 LSINELLQFCSDPALLIASSPALVDQRTVCFSVAALGTGMTNQTVKPGHFNKEFYDFLLE Sbjct 4461 LSINELLQFCSDPALLIASSPALVDQRTVCFSVAALGTGMTNQTVKPGHFNKEFYDFLLE 4520 Query 421 QGFFSEGSELTLKHFFFAQKVDAAVKDFDYYRYNRPTVLDICQARVVYQIVQRYFDIYEG 480 QGFFSEGSELTLKHFFFAQKVDAAVKDFDYYRYNRPTVLDICQARVVYQIVQRYFDIYEG Sbjct 4521 QGFFSEGSELTLKHFFFAQKVDAAVKDFDYYRYNRPTVLDICQARVVYQIVQRYFDIYEG 4580 Query 481 GCITAKEVVVTNLNKSAGYPLNKFGKAGLYYESLSYEEQDELYAYTKRNILPTMTQLNLK 540 GCITAKEVVVTNLNKSAGYPLNKFGKAGLYYESLSYEEQDELYAYTKRNILPTMTQLNLK Sbjct 4581 GCITAKEVVVTNLNKSAGYPLNKFGKAGLYYESLSYEEQDELYAYTKRNILPTMTQLNLK 4640 Query 541 YAISGKERARTVGGVSLLSTMTTRQYHQKHLKSIVNTRGASVVIGTTKFYGGWDNMLKNL 600 YAISGKERARTVGGVSLLSTMTTRQYHQKHLKSIVNTRGASVVIGTTKFYGGWDNMLKNL Sbjct 4641 YAISGKERARTVGGVSLLSTMTTRQYHQKHLKSIVNTRGASVVIGTTKFYGGWDNMLKNL 4700 Query 601 IDGVENPCLMGWDYPKCDRALPNMIRMISAMILGSKHTTCCSSTDRFFRLCNELAQVLTE 660 IDGVENPCLMGWDYPKCDRALPNMIRMISAMILGSKHTTCCSSTDRFFRLCNELAQVLTE Sbjct 4701 IDGVENPCLMGWDYPKCDRALPNMIRMISAMILGSKHTTCCSSTDRFFRLCNELAQVLTE 4760 Query 661 VVYSNGGFYLKPGGTTSGDATTAYANSVFNIFQAVSANVNKLLSVDSNVCHNLEVKQLQR 720 VVYSNGGFYLKPGGTTSGDATTAYANSVFNIFQAVSANVNKLLSVDSNVCHNLEVKQLQR Sbjct 4761 VVYSNGGFYLKPGGTTSGDATTAYANSVFNIFQAVSANVNKLLSVDSNVCHNLEVKQLQR 4820 Query 721 KLYECCYRSTIVDDQFVVEYYGYLRKHFSMMILSDDGVVCYNNDYASLGYVADLNAFKAV 780 KLYECCYRSTIVDDQFVVEYYGYLRKHFSMMILSDDGVVCYNNDYASLGYVADLNAFKAV Sbjct 4821 KLYECCYRSTIVDDQFVVEYYGYLRKHFSMMILSDDGVVCYNNDYASLGYVADLNAFKAV 4880 Query 781 LYYQNNVFMSASKCWIEPDINKGPHEFCSQHTMQIVDKEGTYYLPYPDPSRILSAGVFVD 840 LYYQNNVFMSASKCWIEPDINKGPHEFCSQHTMQIVDKEGTYYLPYPDPSRILSAGVFVD Sbjct 4881 LYYQNNVFMSASKCWIEPDINKGPHEFCSQHTMQIVDKEGTYYLPYPDPSRILSAGVFVD 4940 Query 841 DVVKTDAVVLLERYVSLAIDAYPLSKHENPEYKKVFYVLLDWVKHLYKTLNAGVLESFSV 900 DVVKTDAVVLLERYVSLAIDAYPLSKHENPEYKKVFYVLLDWVKHLYKTLNAGVLESFSV Sbjct 4941 DVVKTDAVVLLERYVSLAIDAYPLSKHENPEYKKVFYVLLDWVKHLYKTLNAGVLESFSV 5000 Query 901 TLLEDSTAKFWDESFYANMYEKSAVLQ 927 TLLEDSTAKFWDESFYANMYEKSAVLQ Sbjct 5001 TLLEDSTAKFWDESFYANMYEKSAVLQ 5027 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p14; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p66; AltName: Full=p66-HEL; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp16 [Scotophilus bat coronavirus 512] Sequence ID: P0C6W0.1 Length: 6793 Range 1: 4112 to 5038 Score:1746 bits(4522), Expect:0.0, Method:Compositional matrix adjust., Identities:809/927(87%), Positives:878/927(94%), Gaps:0/927(0%) Query 1 STDMAYLNRVRGSSAARLEPCNGTDTQHVYRAFDIYNKDVACLGKFLKVNCVRLKNLDKH 60 S D YLNRVRGSSAARLEP NG+DT HV+RAFD+YN+DVAC+ KFLKVNCVRLKNLDKH Sbjct 4112 SVDSGYLNRVRGSSAARLEPLNGSDTHHVFRAFDVYNRDVACISKFLKVNCVRLKNLDKH 4171 Query 61 DAFYVVKRCTKSAMEHEQSIYSRLEKCGAIAEHDFFTWKDGRAIYGNVCRKDLTEYTMMD 120 DAF++VK+CTKS MEHEQSIY+ + CGA+A+HDFFTWK+GR++YGNVCR+DLTEYTMMD Sbjct 4172 DAFWIVKKCTKSVMEHEQSIYNLISDCGAVAKHDFFTWKEGRSVYGNVCRQDLTEYTMMD 4231 Query 121 LCYALRNFDENNCDVLKSILIKVGACEESYFNNKVWFDPVENEDIHRVYALLGTIVARAM 180 LCYALRNFDENNC+ LK IL+ VGAC+ESYF+NK+WFDPVENED+HRVYA LGTIVARAM Sbjct 4232 LCYALRNFDENNCETLKKILVVVGACDESYFDNKLWFDPVENEDVHRVYAKLGTIVARAM 4291 Query 181 LKCVKFCDAMVEQGIVGVVTLDNQDLNGDFYDFGDFTCSIKGMGVPICTSYYSYMMPVMG 240 LKCVK+CDAMVEQGIVGV+TLDNQDLNGDFYDFGDF S+KGMGVPICTSYYSYMMPVMG Sbjct 4292 LKCVKYCDAMVEQGIVGVITLDNQDLNGDFYDFGDFVTSVKGMGVPICTSYYSYMMPVMG 4351 Query 241 MTNCLASECFVKSDIFGEDFKSYDLLEYDFTEHKTALFNKYFKYWGLQYHPNCVDCSDEQ 300 MTNCLASECF+KSDIFGEDF+++DLL YDFTEHK LFNKYFK+WG YHPNC DC DE Sbjct 4352 MTNCLASECFIKSDIFGEDFRTFDLLAYDFTEHKVNLFNKYFKHWGQTYHPNCEDCHDES 4411 Query 301 CIVHCANFNTLFSTTIPITAFGPLCRKCWIDGVPLVTTAGYHFKQLGIVWNNDLNLHSSR 360 CIVHCANFNTLF+TTIPITAFGPLCRKCWIDGVPLVTTAGYHFKQLGIVWN DLNLHSSR Sbjct 4412 CIVHCANFNTLFATTIPITAFGPLCRKCWIDGVPLVTTAGYHFKQLGIVWNKDLNLHSSR 4471 Query 361 LSINELLQFCSDPALLIASSPALVDQRTVCFSVAALGTGMTNQTVKPGHFNKEFYDFLLE 420 L+INELLQFC+DP+LLIASSPALVD+RTVCFSVAALGTGMTNQTVKPGHFN+EFYDFL Sbjct 4472 LTINELLQFCADPSLLIASSPALVDKRTVCFSVAALGTGMTNQTVKPGHFNREFYDFLRS 4531 Query 421 QGFFSEGSELTLKHFFFAQKVDAAVKDFDYYRYNRPTVLDICQARVVYQIVQRYFDIYEG 480 QGFF EGSELTLKHFFFAQK DAAV+DFDYYRYNR TVLDICQARVVYQIVQ YF +YEG Sbjct 4532 QGFFEEGSELTLKHFFFAQKGDAAVRDFDYYRYNRTTVLDICQARVVYQIVQCYFGMYEG 4591 Query 481 GCITAKEVVVTNLNKSAGYPLNKFGKAGLYYESLSYEEQDELYAYTKRNILPTMTQLNLK 540 GCITAKEV+V NLNKSAGYP NKFGKAGLYY+SLSYEEQD+LYAYTKRNI+PTMTQLNLK Sbjct 4592 GCITAKEVIVNNLNKSAGYPFNKFGKAGLYYDSLSYEEQDDLYAYTKRNIIPTMTQLNLK 4651 Query 541 YAISGKERARTVGGVSLLSTMTTRQYHQKHLKSIVNTRGASVVIGTTKFYGGWDNMLKNL 600 YAISGK+RARTVGGVSLLSTMTTRQYHQKHLKSIVNTRGASVVIGTTKFYGGWDNMLK L Sbjct 4652 YAISGKDRARTVGGVSLLSTMTTRQYHQKHLKSIVNTRGASVVIGTTKFYGGWDNMLKTL 4711 Query 601 IDGVENPCLMGWDYPKCDRALPNMIRMISAMILGSKHTTCCSSTDRFFRLCNELAQVLTE 660 I VENP LMGWDYPKCDRALPNMIRMISAMILGSKH CCSS+DR++RLCNELAQVLTE Sbjct 4712 IKDVENPHLMGWDYPKCDRALPNMIRMISAMILGSKHVNCCSSSDRYYRLCNELAQVLTE 4771 Query 661 VVYSNGGFYLKPGGTTSGDATTAYANSVFNIFQAVSANVNKLLSVDSNVCHNLEVKQLQR 720 +VYSNGGFY+KPGGTTSGDATTAYANSVFNIFQA SANVN+LLSVDSN C+N+EVKQLQR Sbjct 4772 MVYSNGGFYVKPGGTTSGDATTAYANSVFNIFQATSANVNRLLSVDSNTCNNIEVKQLQR 4831 Query 721 KLYECCYRSTIVDDQFVVEYYGYLRKHFSMMILSDDGVVCYNNDYASLGYVADLNAFKAV 780 KLY+CCYRS+ VD FV EY+GYLRKHFSMMILSDDGVVCYN++YA+LGYVADLNAFKAV Sbjct 4832 KLYDCCYRSSSVDQSFVEEYFGYLRKHFSMMILSDDGVVCYNSEYAALGYVADLNAFKAV 4891 Query 781 LYYQNNVFMSASKCWIEPDINKGPHEFCSQHTMQIVDKEGTYYLPYPDPSRILSAGVFVD 840 LYYQNNVFMSASKCWIEPDINKGPHEFCSQHTMQIVDK+GTYYLPYPDPSRILSAGVFVD Sbjct 4892 LYYQNNVFMSASKCWIEPDINKGPHEFCSQHTMQIVDKDGTYYLPYPDPSRILSAGVFVD 4951 Query 841 DVVKTDAVVLLERYVSLAIDAYPLSKHENPEYKKVFYVLLDWVKHLYKTLNAGVLESFSV 900 D+VKTD V+LLERYVSLAIDAYPLSKH+NPEY++VF V+LDWVKHLYKTLN GVL+SFSV Sbjct 4952 DIVKTDPVILLERYVSLAIDAYPLSKHDNPEYRRVFTVMLDWVKHLYKTLNQGVLDSFSV 5011 Query 901 TLLEDSTAKFWDESFYANMYEKSAVLQ 927 TLLED+TAKFWDESFYA+MYE+S+VLQ Sbjct 5012 TLLEDATAKFWDESFYASMYEQSSVLQ 5038 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p14; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p66; AltName: Full=p66-HEL; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p41; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp16 [Human coronavirus NL63] Sequence ID: P0C6X5.1 Length: 6729 Range 1: 4044 to 4970 Score:1577 bits(4084), Expect:0.0, Method:Compositional matrix adjust., Identities:735/927(79%), Positives:823/927(88%), Gaps:0/927(0%) Query 1 STDMAYLNRVRGSSAARLEPCNGTDTQHVYRAFDIYNKDVACLGKFLKVNCVRLKNLDKH 60 S D++YLNR RGSSAARLEPCNGTD RAFDIYNK+V+ LGK LK+NCVR KN D Sbjct 4044 SVDISYLNRARGSSAARLEPCNGTDIDKCVRAFDIYNKNVSFLGKCLKMNCVRFKNADLK 4103 Query 61 DAFYVVKRCTKSAMEHEQSIYSRLEKCGAIAEHDFFTWKDGRAIYGNVCRKDLTEYTMMD 120 D ++V+KRCTKS MEHEQS+Y+ L GA+AEHDFFTWKDGR IYGNV R +LT+YTMMD Sbjct 4104 DGYFVIKRCTKSVMEHEQSMYNLLNFSGALAEHDFFTWKDGRVIYGNVSRHNLTKYTMMD 4163 Query 121 LCYALRNFDENNCDVLKSILIKVGACEESYFNNKVWFDPVENEDIHRVYALLGTIVARAM 180 L YA+RNFDE NCDVLK +L+ G C+ SYF++K W+DPVENEDIHRVYA LG IVARAM Sbjct 4164 LVYAMRNFDEQNCDVLKEVLVLTGCCDNSYFDSKGWYDPVENEDIHRVYASLGKIVARAM 4223 Query 181 LKCVKFCDAMVEQGIVGVVTLDNQDLNGDFYDFGDFTCSIKGMGVPICTSYYSYMMPVMG 240 LKCV CDAMV +G+VGV+TLDNQDLNG+FYDFGDF S+ MGVP CTSYYSYMMP+MG Sbjct 4224 LKCVALCDAMVAKGVVGVLTLDNQDLNGNFYDFGDFVVSLPNMGVPCCTSYYSYMMPIMG 4283 Query 241 MTNCLASECFVKSDIFGEDFKSYDLLEYDFTEHKTALFNKYFKYWGLQYHPNCVDCSDEQ 300 +TNCLASECFVKSDIFG DFK++DLL+YDFTEHK LFNKYFK+W YHPNC DC D+ Sbjct 4284 LTNCLASECFVKSDIFGSDFKTFDLLKYDFTEHKENLFNKYFKHWSFDYHPNCSDCYDDM 4343 Query 301 CIVHCANFNTLFSTTIPITAFGPLCRKCWIDGVPLVTTAGYHFKQLGIVWNNDLNLHSSR 360 C++HCANFNTLF+TTIP TAFGPLCRK +IDGVPLVTTAGYHFKQLG+VWN D+N HS R Sbjct 4344 CVIHCANFNTLFATTIPGTAFGPLCRKVFIDGVPLVTTAGYHFKQLGLVWNKDVNTHSVR 4403 Query 361 LSINELLQFCSDPALLIASSPALVDQRTVCFSVAALGTGMTNQTVKPGHFNKEFYDFLLE 420 L+I ELLQF +DP+L+IASSPALVDQRT+CFSVAAL TG+TNQ VKPGHFN+EFY+FL Sbjct 4404 LTITELLQFVTDPSLIIASSPALVDQRTICFSVAALSTGLTNQVVKPGHFNEEFYNFLRL 4463 Query 421 QGFFSEGSELTLKHFFFAQKVDAAVKDFDYYRYNRPTVLDICQARVVYQIVQRYFDIYEG 480 +GFF EGSELTLKHFFFAQ DAAVKDFD+YRYN+PT+LDICQARV Y+IV RYFDIYEG Sbjct 4464 RGFFDEGSELTLKHFFFAQNGDAAVKDFDFYRYNKPTILDICQARVTYKIVSRYFDIYEG 4523 Query 481 GCITAKEVVVTNLNKSAGYPLNKFGKAGLYYESLSYEEQDELYAYTKRNILPTMTQLNLK 540 GCI A EVVVTNLNKSAG+PLNKFGKA LYYES+SYEEQD L+A TKRN+LPTMTQLNLK Sbjct 4524 GCIKACEVVVTNLNKSAGWPLNKFGKASLYYESISYEEQDALFALTKRNVLPTMTQLNLK 4583 Query 541 YAISGKERARTVGGVSLLSTMTTRQYHQKHLKSIVNTRGASVVIGTTKFYGGWDNMLKNL 600 YAISGKERARTVGGVSLLSTMTTRQYHQKHLKSIVNTR A+VVIGTTKFYGGW+NML+ L Sbjct 4584 YAISGKERARTVGGVSLLSTMTTRQYHQKHLKSIVNTRNATVVIGTTKFYGGWNNMLRTL 4643 Query 601 IDGVENPCLMGWDYPKCDRALPNMIRMISAMILGSKHTTCCSSTDRFFRLCNELAQVLTE 660 IDGVENP LMGWDYPKCDRALPNMIRMISAM+LGSKH CC++TDRF+RL NELAQVLTE Sbjct 4644 IDGVENPMLMGWDYPKCDRALPNMIRMISAMVLGSKHVNCCTATDRFYRLGNELAQVLTE 4703 Query 661 VVYSNGGFYLKPGGTTSGDATTAYANSVFNIFQAVSANVNKLLSVDSNVCHNLEVKQLQR 720 VVYSNGGFY KPGGTTSGDA+TAYANS+FNIFQAVS+N+N+LLSV S+ C+N+ V+ LQR Sbjct 4704 VVYSNGGFYFKPGGTTSGDASTAYANSIFNIFQAVSSNINRLLSVPSDSCNNVNVRDLQR 4763 Query 721 KLYECCYRSTIVDDQFVVEYYGYLRKHFSMMILSDDGVVCYNNDYASLGYVADLNAFKAV 780 +LY+ CYR T V++ F+ +YYGYLRKHFSMMILSDDGVVCYN DYA LGY+AD++AFKA Sbjct 4764 RLYDNCYRLTSVEESFIDDYYGYLRKHFSMMILSDDGVVCYNKDYAELGYIADISAFKAT 4823 Query 781 LYYQNNVFMSASKCWIEPDINKGPHEFCSQHTMQIVDKEGTYYLPYPDPSRILSAGVFVD 840 LYYQNNVFMS SKCW+E D+ KGPHEFCSQHTMQIVDK+GTYYLPYPDPSRILSAGVFVD Sbjct 4824 LYYQNNVFMSTSKCWVEEDLTKGPHEFCSQHTMQIVDKDGTYYLPYPDPSRILSAGVFVD 4883 Query 841 DVVKTDAVVLLERYVSLAIDAYPLSKHENPEYKKVFYVLLDWVKHLYKTLNAGVLESFSV 900 DVVKTDAVVLLERYVSLAIDAYPLSKH N EY+KVFYVLLDWVKHL K LN GVLESFSV Sbjct 4884 DVVKTDAVVLLERYVSLAIDAYPLSKHPNSEYRKVFYVLLDWVKHLNKNLNEGVLESFSV 4943 Query 901 TLLEDSTAKFWDESFYANMYEKSAVLQ 927 TLL++ KFW E FYA+MYE S +LQ Sbjct 4944 TLLDNQEDKFWCEDFYASMYENSTILQ 4970 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p16; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p66; AltName: Full=p66-HEL; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p41; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp16 [Human coronavirus 229E] Sequence ID: P0C6X1.1 Length: 6758 Range 1: 4069 to 4995 Score:1549 bits(4010), Expect:0.0, Method:Compositional matrix adjust., Identities:716/927(77%), Positives:818/927(88%), Gaps:0/927(0%) Query 1 STDMAYLNRVRGSSAARLEPCNGTDTQHVYRAFDIYNKDVACLGKFLKVNCVRLKNLDKH 60 S D +YLNRVRGSSAARLEPCNGTD + RAFD+YNKD + +GK LK NCVR KN+DK Sbjct 4069 SFDNSYLNRVRGSSAARLEPCNGTDIDYCVRAFDVYNKDASFIGKNLKSNCVRFKNVDKD 4128 Query 61 DAFYVVKRCTKSAMEHEQSIYSRLEKCGAIAEHDFFTWKDGRAIYGNVCRKDLTEYTMMD 120 DAFY+VKRC KS M+HEQS+Y+ L+ C A+A+HDFFTW +GR IYGNV R+DLT+YTMMD Sbjct 4129 DAFYIVKRCIKSVMDHEQSMYNLLKGCNAVAKHDFFTWHEGRTIYGNVSRQDLTKYTMMD 4188 Query 121 LCYALRNFDENNCDVLKSILIKVGACEESYFNNKVWFDPVENEDIHRVYALLGTIVARAM 180 LC+ALRNFDE +C+V K IL+ G C YF K WFDP+ENEDIHRVYA LG +VA AM Sbjct 4189 LCFALRNFDEKDCEVFKEILVLTGCCSTDYFEMKNWFDPIENEDIHRVYAALGKVVANAM 4248 Query 181 LKCVKFCDAMVEQGIVGVVTLDNQDLNGDFYDFGDFTCSIKGMGVPICTSYYSYMMPVMG 240 LKCV FCD MV +G+VGV+TLDNQDLNG+FYDFGDF GMG+P CTSYYSYMMPVMG Sbjct 4249 LKCVAFCDEMVLKGVVGVLTLDNQDLNGNFYDFGDFVLCPPGMGIPYCTSYYSYMMPVMG 4308 Query 241 MTNCLASECFVKSDIFGEDFKSYDLLEYDFTEHKTALFNKYFKYWGLQYHPNCVDCSDEQ 300 MTNCLASECF+KSDIFG+DFK++DLL+YDFTEHK LFNKYFKYWG YHP+CVDC DE Sbjct 4309 MTNCLASECFMKSDIFGQDFKTFDLLKYDFTEHKEVLFNKYFKYWGQDYHPDCVDCHDEM 4368 Query 301 CIVHCANFNTLFSTTIPITAFGPLCRKCWIDGVPLVTTAGYHFKQLGIVWNNDLNLHSSR 360 CI+HC+NFNTLF+TTIP TAFGPLCRK +IDGVP+V TAGYHFKQLG+VWN D+N HS+R Sbjct 4369 CILHCSNFNTLFATTIPNTAFGPLCRKVFIDGVPVVATAGYHFKQLGLVWNKDVNTHSTR 4428 Query 361 LSINELLQFCSDPALLIASSPALVDQRTVCFSVAALGTGMTNQTVKPGHFNKEFYDFLLE 420 L+I ELLQF +DP L++ASSPALVD+RTVCFSVAAL TG+T+QTVKPGHFNKEFYDFL Sbjct 4429 LTITELLQFVTDPTLIVASSPALVDKRTVCFSVAALSTGLTSQTVKPGHFNKEFYDFLRS 4488 Query 421 QGFFSEGSELTLKHFFFAQKVDAAVKDFDYYRYNRPTVLDICQARVVYQIVQRYFDIYEG 480 QGFF EGSELTLKHFFF QK DAA+KDFDYYRYNRPT+LDI QARV YQ+ RYFD YEG Sbjct 4489 QGFFDEGSELTLKHFFFTQKGDAAIKDFDYYRYNRPTMLDIGQARVAYQVAARYFDCYEG 4548 Query 481 GCITAKEVVVTNLNKSAGYPLNKFGKAGLYYESLSYEEQDELYAYTKRNILPTMTQLNLK 540 GCIT++EVVVTNLNKSAG+PLNKFGKAGLYYES+SYEEQD +++ TKRNILPTMTQLNLK Sbjct 4549 GCITSREVVVTNLNKSAGWPLNKFGKAGLYYESISYEEQDAIFSLTKRNILPTMTQLNLK 4608 Query 541 YAISGKERARTVGGVSLLSTMTTRQYHQKHLKSIVNTRGASVVIGTTKFYGGWDNMLKNL 600 YAISGKERARTVGGVSLL+TMTTRQ+HQK LKSIV TR A+VVIGTTKFYGGWDNMLKNL Sbjct 4609 YAISGKERARTVGGVSLLATMTTRQFHQKCLKSIVATRNATVVIGTTKFYGGWDNMLKNL 4668 Query 601 IDGVENPCLMGWDYPKCDRALPNMIRMISAMILGSKHTTCCSSTDRFFRLCNELAQVLTE 660 + V++P LMGWDYPKCDRA+P+MIRM+SAMILGSKH TCC+++D+F+RL NELAQVLTE Sbjct 4669 MADVDDPKLMGWDYPKCDRAMPSMIRMLSAMILGSKHVTCCTASDKFYRLSNELAQVLTE 4728 Query 661 VVYSNGGFYLKPGGTTSGDATTAYANSVFNIFQAVSANVNKLLSVDSNVCHNLEVKQLQR 720 VVYSNGGFY KPGGTTSGDATTAYANSVFNIFQAVS+N+N +LSV+S+ C+N VK+LQR Sbjct 4729 VVYSNGGFYFKPGGTTSGDATTAYANSVFNIFQAVSSNINCVLSVNSSNCNNFNVKKLQR 4788 Query 721 KLYECCYRSTIVDDQFVVEYYGYLRKHFSMMILSDDGVVCYNNDYASLGYVADLNAFKAV 780 +LY+ CYR++ VD+ FV ++YGYL+KHFSMMILSDD VVCYN YA LGY+AD++AFKA Sbjct 4789 QLYDNCYRNSNVDESFVDDFYGYLQKHFSMMILSDDSVVCYNKTYAGLGYIADISAFKAT 4848 Query 781 LYYQNNVFMSASKCWIEPDINKGPHEFCSQHTMQIVDKEGTYYLPYPDPSRILSAGVFVD 840 LYYQN VFMS +KCW E D++ GPHEFCSQHTMQIVD+ G YYLPYPDPSRI+SAGVFVD Sbjct 4849 LYYQNGVFMSTAKCWTEEDLSIGPHEFCSQHTMQIVDENGKYYLPYPDPSRIISAGVFVD 4908 Query 841 DVVKTDAVVLLERYVSLAIDAYPLSKHENPEYKKVFYVLLDWVKHLYKTLNAGVLESFSV 900 D+ KTDAV+LLERYVSLAIDAYPLSKH PEY+KVFY LLDWVKHL KTLN GVLESFSV Sbjct 4909 DITKTDAVILLERYVSLAIDAYPLSKHPKPEYRKVFYALLDWVKHLNKTLNEGVLESFSV 4968 Query 901 TLLEDSTAKFWDESFYANMYEKSAVLQ 927 TLL++ +KFWDESFYA+MYEKS VLQ Sbjct 4969 TLLDEHESKFWDESFYASMYEKSTVLQ 4995 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p14; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p66; AltName: Full=p66-HEL; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p41; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp16 [Porcine transmissible gastroenteritis coronavirus strain Purdue] Sequence ID: P0C6Y5.1 Length: 6684 Range 1: 4001 to 4927 Score:1492 bits(3862), Expect:0.0, Method:Compositional matrix adjust., Identities:702/927(76%), Positives:800/927(86%), Gaps:0/927(0%) Query 1 STDMAYLNRVRGSSAARLEPCNGTDTQHVYRAFDIYNKDVACLGKFLKVNCVRLKNLDKH 60 + D +YLNRVRGSSAARLEPCNGTD HV RAFDIYNKDVAC+GKFLK NC R +NLDKH Sbjct 4001 TVDQSYLNRVRGSSAARLEPCNGTDPDHVSRAFDIYNKDVACIGKFLKTNCSRFRNLDKH 4060 Query 61 DAFYVVKRCTKSAMEHEQSIYSRLEKCGAIAEHDFFTWKDGRAIYGNVCRKDLTEYTMMD 120 DA+Y+VKRCTK+ M+HEQ Y+ L+ GA+AEHDFFT+K+GR +GNV R++LT+YTMMD Sbjct 4061 DAYYIVKRCTKTVMDHEQVCYNDLKDSGAVAEHDFFTYKEGRCEFGNVARRNLTKYTMMD 4120 Query 121 LCYALRNFDENNCDVLKSILIKVGACEESYFNNKVWFDPVENEDIHRVYALLGTIVARAM 180 LCYA+RNFDE NC+VLK IL+ VGAC E +F NK WFDPVENE IH VYA LG IVA AM Sbjct 4121 LCYAIRNFDEKNCEVLKEILVTVGACTEEFFENKDWFDPVENEAIHEVYAKLGPIVANAM 4180 Query 181 LKCVKFCDAMVEQGIVGVVTLDNQDLNGDFYDFGDFTCSIKGMGVPICTSYYSYMMPVMG 240 LKCV FCDA+VE+G +GV+TLDNQDLNG+FYDFGDF + G G TSYYSYMMP+MG Sbjct 4181 LKCVAFCDAIVEKGYIGVITLDNQDLNGNFYDFGDFVKTAPGFGCACVTSYYSYMMPLMG 4240 Query 241 MTNCLASECFVKSDIFGEDFKSYDLLEYDFTEHKTALFNKYFKYWGLQYHPNCVDCSDEQ 300 MT+CL SE FVKSDI+G D+K YDLL YDFTEHK LF KYFKYW YHPNC DC+ ++ Sbjct 4241 MTSCLESENFVKSDIYGSDYKQYDLLAYDFTEHKEYLFQKYFKYWDRTYHPNCSDCTSDE 4300 Query 301 CIVHCANFNTLFSTTIPITAFGPLCRKCWIDGVPLVTTAGYHFKQLGIVWNNDLNLHSSR 360 CI+HCANFNTLFS TIP+TAFGPL RK IDGVP+V TAGYHFKQLGIVWN D+ L + + Sbjct 4301 CIIHCANFNTLFSMTIPMTAFGPLVRKVHIDGVPVVVTAGYHFKQLGIVWNLDVKLDTMK 4360 Query 361 LSINELLQFCSDPALLIASSPALVDQRTVCFSVAALGTGMTNQTVKPGHFNKEFYDFLLE 420 LS+ +LL+F +DP LL+ASSPAL+DQRTVCFS+AAL TG+T QTVKPGHFNK+FYDF+ E Sbjct 4361 LSMTDLLRFVTDPTLLVASSPALLDQRTVCFSIAALSTGITYQTVKPGHFNKDFYDFITE 4420 Query 421 QGFFSEGSELTLKHFFFAQKVDAAVKDFDYYRYNRPTVLDICQARVVYQIVQRYFDIYEG 480 +GFF EGSELTLKHFFFAQ +AA+ DF+YYRYNR TVLDICQA+ VY+IV +YF+ Y+G Sbjct 4421 RGFFEEGSELTLKHFFFAQGGEAAMTDFNYYRYNRVTVLDICQAQFVYKIVGKYFECYDG 4480 Query 481 GCITAKEVVVTNLNKSAGYPLNKFGKAGLYYESLSYEEQDELYAYTKRNILPTMTQLNLK 540 GCI A+EVVVTN +KSAGYPLNKFGKA LYYE+LSYEEQD L+A TKRN+LPTMTQ+NLK Sbjct 4481 GCINAREVVVTNYDKSAGYPLNKFGKARLYYETLSYEEQDALFALTKRNVLPTMTQMNLK 4540 Query 541 YAISGKERARTVGGVSLLSTMTTRQYHQKHLKSIVNTRGASVVIGTTKFYGGWDNMLKNL 600 YAISGK RARTVGGVSLLSTMTTRQYHQKHLKSI TR A+VVIG+TKFYGGWDNMLKNL Sbjct 4541 YAISGKARARTVGGVSLLSTMTTRQYHQKHLKSIAATRNATVVIGSTKFYGGWDNMLKNL 4600 Query 601 IDGVENPCLMGWDYPKCDRALPNMIRMISAMILGSKHTTCCSSTDRFFRLCNELAQVLTE 660 + V+N CLMGWDYPKCDRALPNMIRM SAMILGSKH CC+ DRF+RL NELAQVLTE Sbjct 4601 MRDVDNGCLMGWDYPKCDRALPNMIRMASAMILGSKHVGCCTHNDRFYRLSNELAQVLTE 4660 Query 661 VVYSNGGFYLKPGGTTSGDATTAYANSVFNIFQAVSANVNKLLSVDSNVCHNLEVKQLQR 720 VV+ GGFY KPGGTTSGD TTAYANS FNIFQAVSANVNKLL VDSN C+N+ VK +QR Sbjct 4661 VVHCTGGFYFKPGGTTSGDGTTAYANSAFNIFQAVSANVNKLLGVDSNACNNVTVKSIQR 4720 Query 721 KLYECCYRSTIVDDQFVVEYYGYLRKHFSMMILSDDGVVCYNNDYASLGYVADLNAFKAV 780 K+Y+ CYRS+ +D++FVVEY+ YLRKHFSMMILSDDGVVCYN DYA LGYVAD+NAFKA Sbjct 4721 KIYDNCYRSSSIDEEFVVEYFSYLRKHFSMMILSDDGVVCYNKDYADLGYVADINAFKAT 4780 Query 781 LYYQNNVFMSASKCWIEPDINKGPHEFCSQHTMQIVDKEGTYYLPYPDPSRILSAGVFVD 840 LYYQNNVFMS SKCW+EPD++ GPHEFCSQHT+QIV +G YYLPYPDPSRILSAGVFVD Sbjct 4781 LYYQNNVFMSTSKCWVEPDLSVGPHEFCSQHTLQIVGPDGDYYLPYPDPSRILSAGVFVD 4840 Query 841 DVVKTDAVVLLERYVSLAIDAYPLSKHENPEYKKVFYVLLDWVKHLYKTLNAGVLESFSV 900 D+VKTD V++LERYVSLAIDAYPL+KH P Y+KVFY LLDWVKHL K LNAGVL+SFSV Sbjct 4841 DIVKTDNVIMLERYVSLAIDAYPLTKHPKPAYQKVFYTLLDWVKHLQKNLNAGVLDSFSV 4900 Query 901 TLLEDSTAKFWDESFYANMYEKSAVLQ 927 T+LE+ KFW E FYA++YEKS VLQ Sbjct 4901 TMLEEGQDKFWSEEFYASLYEKSTVLQ 4927 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; Contains: RecName: Full=Non-structural protein 11; Short=nsp11; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp16 [Feline infectious peritonitis virus (strain 79-1146)] Sequence ID: Q98VG9.2 Length: 6709 Range 1: 4026 to 4952 Score:1466 bits(3795), Expect:0.0, Method:Compositional matrix adjust., Identities:692/927(75%), Positives:791/927(85%), Gaps:0/927(0%) Query 1 STDMAYLNRVRGSSAARLEPCNGTDTQHVYRAFDIYNKDVACLGKFLKVNCVRLKNLDKH 60 + D +YLN LEPCNGTD HV RAFDIYNKDVAC+GKFLK NC R +NLDKH Sbjct 4026 TIDQSYLNECGVLVQLDLEPCNGTDPDHVSRAFDIYNKDVACIGKFLKTNCSRFRNLDKH 4085 Query 61 DAFYVVKRCTKSAMEHEQSIYSRLEKCGAIAEHDFFTWKDGRAIYGNVCRKDLTEYTMMD 120 DA+YVVKRCTKS M+HEQ Y+ L+ G +AEHDFF +K+GR +GNV RKDLT+YTMMD Sbjct 4086 DAYYVVKRCTKSVMDHEQVCYNDLKDSGVVAEHDFFLYKEGRCEFGNVARKDLTKYTMMD 4145 Query 121 LCYALRNFDENNCDVLKSILIKVGACEESYFNNKVWFDPVENEDIHRVYALLGTIVARAM 180 LCYA+RNFDE NC+VLK IL+ +GAC ES+F NK WFDPVENE IH VYA LG IVA AM Sbjct 4146 LCYAIRNFDEKNCEVLKEILVTLGACNESFFENKDWFDPVENEAIHEVYARLGPIVANAM 4205 Query 181 LKCVKFCDAMVEQGIVGVVTLDNQDLNGDFYDFGDFTCSIKGMGVPICTSYYSYMMPVMG 240 LKCV FCDA+VE+G +G++TLDNQDLNG+FYDFGDF + G G TSYYSYMMP+MG Sbjct 4206 LKCVAFCDAIVEKGYIGIITLDNQDLNGNFYDFGDFVKTTPGFGCACVTSYYSYMMPLMG 4265 Query 241 MTNCLASECFVKSDIFGEDFKSYDLLEYDFTEHKTALFNKYFKYWGLQYHPNCVDCSDEQ 300 MT+CL SE FVKSDI+G D+K YDLL YDFT+HK LF+KYFK+W YHPNC DC+ ++ Sbjct 4266 MTSCLESENFVKSDIYGADYKQYDLLAYDFTDHKEKLFHKYFKHWDRTYHPNCSDCTSDE 4325 Query 301 CIVHCANFNTLFSTTIPITAFGPLCRKCWIDGVPLVTTAGYHFKQLGIVWNNDLNLHSSR 360 CI+HCANFNTLFS TIP TAFGPL RK IDGVP+V TAGYHFKQLGIVWN D+ L + + Sbjct 4326 CIIHCANFNTLFSMTIPSTAFGPLVRKVHIDGVPVVVTAGYHFKQLGIVWNLDVKLDTMK 4385 Query 361 LSINELLQFCSDPALLIASSPALVDQRTVCFSVAALGTGMTNQTVKPGHFNKEFYDFLLE 420 LS+ +LL+F +DP LL+ASSPAL+DQRTVCFS+AAL TG+T QTVKPGHFNK+FYDF+ E Sbjct 4386 LSMTDLLRFVTDPTLLVASSPALLDQRTVCFSIAALSTGVTYQTVKPGHFNKDFYDFITE 4445 Query 421 QGFFSEGSELTLKHFFFAQKVDAAVKDFDYYRYNRPTVLDICQARVVYQIVQRYFDIYEG 480 +GFF EGSELTLKHFFFAQ +AA+ DF+YYRYNR TVLDICQA+ VY+IV +YF+ Y+G Sbjct 4446 RGFFEEGSELTLKHFFFAQGGEAAMTDFNYYRYNRVTVLDICQAQFVYKIVGKYFECYDG 4505 Query 481 GCITAKEVVVTNLNKSAGYPLNKFGKAGLYYESLSYEEQDELYAYTKRNILPTMTQLNLK 540 GCI A+EVVVTN +KSAGYPLNKFGKA LYYE+LSYEEQD L+A TKRN+LPTMTQ+NLK Sbjct 4506 GCINAREVVVTNYDKSAGYPLNKFGKARLYYETLSYEEQDALFALTKRNVLPTMTQMNLK 4565 Query 541 YAISGKERARTVGGVSLLSTMTTRQYHQKHLKSIVNTRGASVVIGTTKFYGGWDNMLKNL 600 YAISGK RARTVGGVSLLSTMTTRQYHQKHLKSI TR A+VVIG+TKFYGGWDNMLKNL Sbjct 4566 YAISGKARARTVGGVSLLSTMTTRQYHQKHLKSIAATRNATVVIGSTKFYGGWDNMLKNL 4625 Query 601 IDGVENPCLMGWDYPKCDRALPNMIRMISAMILGSKHTTCCSSTDRFFRLCNELAQVLTE 660 + V+N CLMGWDYPKCDRALPNMIRM SAMILGSKH CC+ +DRF+RL NELAQVLTE Sbjct 4626 MRDVDNGCLMGWDYPKCDRALPNMIRMASAMILGSKHVGCCTHSDRFYRLSNELAQVLTE 4685 Query 661 VVYSNGGFYLKPGGTTSGDATTAYANSVFNIFQAVSANVNKLLSVDSNVCHNLEVKQLQR 720 VV+ GGFY KPGGTTSGD TTAYANS FNIFQAVSANVNKLL VDSN C+N+ VK +QR Sbjct 4686 VVHCTGGFYFKPGGTTSGDGTTAYANSAFNIFQAVSANVNKLLGVDSNACNNVTVKSIQR 4745 Query 721 KLYECCYRSTIVDDQFVVEYYGYLRKHFSMMILSDDGVVCYNNDYASLGYVADLNAFKAV 780 K+Y+ CYRS+ +D++FVVEY+ YLRKHFSMMILSDDGVVCYN DYA LGYVAD+NAFKA Sbjct 4746 KIYDNCYRSSSIDEEFVVEYFSYLRKHFSMMILSDDGVVCYNKDYADLGYVADINAFKAT 4805 Query 781 LYYQNNVFMSASKCWIEPDINKGPHEFCSQHTMQIVDKEGTYYLPYPDPSRILSAGVFVD 840 LYYQNNVFMS SKCW+EPD++ GPHEFCSQHT+QIV +G YYLPYPDPSRILSAGVFVD Sbjct 4806 LYYQNNVFMSTSKCWVEPDLSVGPHEFCSQHTLQIVGPDGDYYLPYPDPSRILSAGVFVD 4865 Query 841 DVVKTDAVVLLERYVSLAIDAYPLSKHENPEYKKVFYVLLDWVKHLYKTLNAGVLESFSV 900 D+VKTD V++LERYVSLAIDAYPL+KH P Y+KVFY LLDWVKHL K LNAGVL+SFSV Sbjct 4866 DIVKTDNVIMLERYVSLAIDAYPLTKHPKPAYQKVFYTLLDWVKHLQKNLNAGVLDSFSV 4925 Query 901 TLLEDSTAKFWDESFYANMYEKSAVLQ 927 T+LE+ KFW E FYA++YEKS VLQ Sbjct 4926 TMLEEGQDKFWSEEFYASLYEKSTVLQ 4952 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=nsp16 [Tylonycteris bat coronavirus HKU4] Sequence ID: P0C6W3.1 Length: 7119 Range 1: 4421 to 5354 Score:1183 bits(3060), Expect:0.0, Method:Compositional matrix adjust., Identities:564/935(60%), Positives:711/935(76%), Gaps:9/935(0%) Query 1 STDMAYLNRVRGSSA-ARLEPCN-GTDTQHVYRAFDIYN--KDVACLGKFLKVNCVRLKN 56 S D +LNRVRGSS ARLEPC+ G T VYRAFDI N VA +GK+ K N R Sbjct 4421 SKDTNFLNRVRGSSVNARLEPCSSGLTTDVVYRAFDICNFKARVAGIGKYYKTNTCRFVQ 4480 Query 57 LD----KHDAFYVVKRCTKSAMEHEQSIYSRLEKCGAIAEHDFFTWKDGRAIYGNVCRKD 112 +D K D++++VKR T S E E+ Y L+ C A+A HDFF + + ++ R+ Sbjct 4481 VDDEGHKLDSYFIVKRHTMSNYELEKRCYDLLKDCDAVAIHDFFIFDVDKTKTPHIVRQS 4540 Query 113 LTEYTMMDLCYALRNFDENNCDVLKSILIKVGACEESYFNNKVWFDPVENEDIHRVYALL 172 LTEYTMMDL YALR+FD+NNC+VLKSIL+K G CE+SYF+NK+WFD VEN + VY L Sbjct 4541 LTEYTMMDLVYALRHFDQNNCEVLKSILVKYGCCEQSYFDNKLWFDFVENPSVIGVYHKL 4600 Query 173 GTIVARAMLKCVKFCDAMVEQGIVGVVTLDNQDLNGDFYDFGDFTCSIKGMGVPICTSYY 232 G + +AML VK CD MV+ G+VGV+TLDNQDLNG +YDFGDF + G GV I SYY Sbjct 4601 GERIRQAMLNTVKMCDHMVKSGLVGVLTLDNQDLNGKWYDFGDFVITQPGAGVAIVDSYY 4660 Query 233 SYMMPVMGMTNCLASECFVKSDIFGEDFKSYDLLEYDFTEHKTALFNKYFKYWGLQYHPN 292 SY+MPV+ MTNCLA+E D F + + LLEYD+T++K LFNKYFKYW YHPN Sbjct 4661 SYLMPVLSMTNCLAAETHKDCD-FNKPLIEWPLLEYDYTDYKIGLFNKYFKYWDQTYHPN 4719 Query 293 CVDCSDEQCIVHCANFNTLFSTTIPITAFGPLCRKCWIDGVPLVTTAGYHFKQLGIVWNN 352 CV+CSD++CI+HCANFN LFS +P T+FGP+ RK ++DGVP + + GYH+K+LG+V N Sbjct 4720 CVNCSDDRCILHCANFNVLFSMVLPNTSFGPIVRKIFVDGVPFIVSCGYHYKELGLVMNM 4779 Query 353 DLNLHSSRLSINELLQFCSDPALLIASSPALVDQRTVCFSVAALGTGMTNQTVKPGHFNK 412 D N+H RL++ EL+ + +DPA+ IAS+ AL D RT CFSVAAL TG+T QTV+PG+FNK Sbjct 4780 DFNIHRHRLALKELMMYAADPAMHIASASALWDLRTPCFSVAALTTGLTFQTVRPGNFNK 4839 Query 413 EFYDFLLEQGFFSEGSELTLKHFFFAQKVDAAVKDFDYYRYNRPTVLDICQARVVYQIVQ 472 +FYDF++ +GFF EGS +TLKHFFFAQ AA+ D+ YY YN PT++DI Q ++V Sbjct 4840 DFYDFVVSRGFFKEGSSVTLKHFFFAQDGHAAITDYSYYAYNLPTMVDIKQMLFCMEVVD 4899 Query 473 RYFDIYEGGCITAKEVVVTNLNKSAGYPLNKFGKAGLYYESLSYEEQDELYAYTKRNILP 532 +YFDIY+GGC+ A EV+V NL+KSAG+P NKFGKA +YYES+SY+EQDEL+A TKRN+LP Sbjct 4900 KYFDIYDGGCLNASEVIVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAVTKRNVLP 4959 Query 533 TMTQLNLKYAISGKERARTVGGVSLLSTMTTRQYHQKHLKSIVNTRGASVVIGTTKFYGG 592 T+TQ+NLKYAIS K RARTV GVS+LSTMT RQYHQK LKS+ TRGA+ VIGTTKFYGG Sbjct 4960 TITQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTTKFYGG 5019 Query 593 WDNMLKNLIDGVENPCLMGWDYPKCDRALPNMIRMISAMILGSKHTTCCSSTDRFFRLCN 652 WD MLK L VE+P LMGWDYPKCDRA+PNM R+++++IL KH+TCC+++DRF+RL N Sbjct 5020 WDFMLKTLYKDVESPHLMGWDYPKCDRAMPNMCRILASLILARKHSTCCTNSDRFYRLAN 5079 Query 653 ELAQVLTEVVYSNGGFYLKPGGTTSGDATTAYANSVFNIFQAVSANVNKLLSVDSNVCHN 712 E AQVL+E V GG+Y+KPGGT+SGDATTAYANSVFNI QA +ANV+ L+S + N + Sbjct 5080 ECAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMSANGNTIID 5139 Query 713 LEVKQLQRKLYECCYRSTIVDDQFVVEYYGYLRKHFSMMILSDDGVVCYNNDYASLGYVA 772 E+K +Q LY YR + D +FV +YY +L KHFSMMILSDDGVVCYN+DYA+ GYVA Sbjct 5140 REIKDMQFDLYINVYRKVVPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGYVA 5199 Query 773 DLNAFKAVLYYQNNVFMSASKCWIEPDINKGPHEFCSQHTMQIVDKEGTYYLPYPDPSRI 832 + FK LYYQNNVFMS +KCW+E ++ KGPHEFCSQHT+ I D + Y+LPYPDPSRI Sbjct 5200 SIQNFKETLYYQNNVFMSEAKCWVETNLEKGPHEFCSQHTLYIKDGDDGYFLPYPDPSRI 5259 Query 833 LSAGVFVDDVVKTDAVVLLERYVSLAIDAYPLSKHENPEYKKVFYVLLDWVKHLYKTLNA 892 LSAG FVDD+VKTD V++ERYVSLAIDAYPL+KH++ EY+ VF+V L +++ LYK L Sbjct 5260 LSAGCFVDDIVKTDGTVMMERYVSLAIDAYPLTKHDDTEYQNVFWVYLQYIEKLYKDLTG 5319 Query 893 GVLESFSVTLLEDSTAKFWDESFYANMYEKSAVLQ 927 +L+S+SV L D +AKFW+E FY ++Y LQ Sbjct 5320 HMLDSYSVMLCGDDSAKFWEEGFYRDLYSSPTTLQ 5354 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=nsp16 [Bat coronavirus (BtCoV/133/2005)] Sequence ID: P0C6W1.1 Length: 7126 Range 1: 4428 to 5361 Score:1179 bits(3049), Expect:0.0, Method:Compositional matrix adjust., Identities:562/935(60%), Positives:711/935(76%), Gaps:9/935(0%) Query 1 STDMAYLNRVRGSSA-ARLEPCN-GTDTQHVYRAFDIYN--KDVACLGKFLKVNCVRLKN 56 S D +LNRVRGSS ARLEPC+ G T VYRAFDI N VA +GK+ K N R Sbjct 4428 SKDTNFLNRVRGSSVNARLEPCSSGLTTDVVYRAFDICNFKARVAGIGKYYKTNTCRFVQ 4487 Query 57 LD----KHDAFYVVKRCTKSAMEHEQSIYSRLEKCGAIAEHDFFTWKDGRAIYGNVCRKD 112 +D K D++++VKR T S E E+ Y L+ C A+A HDFF + + ++ R+ Sbjct 4488 VDDEGHKLDSYFIVKRHTMSNYELEKRCYDLLKDCDAVAIHDFFIFDVDKTKTPHIVRQS 4547 Query 113 LTEYTMMDLCYALRNFDENNCDVLKSILIKVGACEESYFNNKVWFDPVENEDIHRVYALL 172 LTEYTMMDL YALR+FD+NNC+VLKSIL+K G CE+SYF+NK+WFD VEN + VY L Sbjct 4548 LTEYTMMDLVYALRHFDQNNCEVLKSILVKYGCCEQSYFDNKLWFDFVENPSVIGVYHKL 4607 Query 173 GTIVARAMLKCVKFCDAMVEQGIVGVVTLDNQDLNGDFYDFGDFTCSIKGMGVPICTSYY 232 G + +AML VK CD MV+ G+VGV+TLDNQDLNG +YDFGDF + G GV I SYY Sbjct 4608 GERIRQAMLNTVKMCDHMVKSGLVGVLTLDNQDLNGKWYDFGDFVITQPGAGVAIVDSYY 4667 Query 233 SYMMPVMGMTNCLASECFVKSDIFGEDFKSYDLLEYDFTEHKTALFNKYFKYWGLQYHPN 292 SY+MPV+ MTNCLA+E D F + + LLEYD+T++K LFNKYFK+W YHPN Sbjct 4668 SYLMPVLSMTNCLAAETHKDCD-FNKPLIEWLLLEYDYTDYKIGLFNKYFKHWDQTYHPN 4726 Query 293 CVDCSDEQCIVHCANFNTLFSTTIPITAFGPLCRKCWIDGVPLVTTAGYHFKQLGIVWNN 352 CV+C D++CI+HCANFN LFS +P T+FGP+ RK ++DGVP + + GYH+K+LG+V N Sbjct 4727 CVNCGDDRCILHCANFNVLFSMVLPNTSFGPIVRKIFVDGVPFIVSCGYHYKELGLVMNM 4786 Query 353 DLNLHSSRLSINELLQFCSDPALLIASSPALVDQRTVCFSVAALGTGMTNQTVKPGHFNK 412 D+N+H RL++ EL+ + +DPA+ IAS+ AL D RT CFSVAAL TG+T QTV+PG+FNK Sbjct 4787 DVNIHRHRLALKELMMYAADPAMHIASASALWDLRTPCFSVAALTTGLTFQTVRPGNFNK 4846 Query 413 EFYDFLLEQGFFSEGSELTLKHFFFAQKVDAAVKDFDYYRYNRPTVLDICQARVVYQIVQ 472 +FYDF++ +GFF EGS +TLKHFFFAQ AA+ D+ YY YN PT++DI Q ++V Sbjct 4847 DFYDFVVSRGFFKEGSSVTLKHFFFAQDGHAAITDYSYYAYNLPTMVDIKQMLFCMEVVD 4906 Query 473 RYFDIYEGGCITAKEVVVTNLNKSAGYPLNKFGKAGLYYESLSYEEQDELYAYTKRNILP 532 +YFDIY+GGC+ A EV+V NL+KSAG+P NKFGKA +YYES+SY+EQDEL+A TKRN+LP Sbjct 4907 KYFDIYDGGCLNASEVIVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAVTKRNVLP 4966 Query 533 TMTQLNLKYAISGKERARTVGGVSLLSTMTTRQYHQKHLKSIVNTRGASVVIGTTKFYGG 592 T+TQ+NLKYAIS K RARTV GVS+LSTMT RQYHQK LKS+ TRGA+ VIGTTKFYGG Sbjct 4967 TITQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTTKFYGG 5026 Query 593 WDNMLKNLIDGVENPCLMGWDYPKCDRALPNMIRMISAMILGSKHTTCCSSTDRFFRLCN 652 WD MLK L VE+P LMGWDYPKCDRA+PNM R+++++IL KH+TCC+++DRF+RL N Sbjct 5027 WDFMLKTLYKDVESPHLMGWDYPKCDRAMPNMCRILASLILARKHSTCCTNSDRFYRLAN 5086 Query 653 ELAQVLTEVVYSNGGFYLKPGGTTSGDATTAYANSVFNIFQAVSANVNKLLSVDSNVCHN 712 E AQVL+E V GG+Y+KPGGT+SGDATTAYANSVFNI QA +ANV+ L+S + N + Sbjct 5087 ECAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMSANGNTIID 5146 Query 713 LEVKQLQRKLYECCYRSTIVDDQFVVEYYGYLRKHFSMMILSDDGVVCYNNDYASLGYVA 772 E+K +Q LY YR + D +FV +YY +L KHFSMMILSDDGVVCYN+DYA+ GYVA Sbjct 5147 REIKDMQFDLYINVYRKVVPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGYVA 5206 Query 773 DLNAFKAVLYYQNNVFMSASKCWIEPDINKGPHEFCSQHTMQIVDKEGTYYLPYPDPSRI 832 + FK LYYQNNVFMS +KCW+E ++ KGPHEFCSQHT+ I D + Y+LPYPDPSRI Sbjct 5207 SIQNFKETLYYQNNVFMSEAKCWVETNLEKGPHEFCSQHTLYIKDGDDGYFLPYPDPSRI 5266 Query 833 LSAGVFVDDVVKTDAVVLLERYVSLAIDAYPLSKHENPEYKKVFYVLLDWVKHLYKTLNA 892 LSAG FVDD+VKTD V++ERYVSLAIDAYPL+KH++ EY+ VF+V L +++ LYK L Sbjct 5267 LSAGCFVDDIVKTDGTVMMERYVSLAIDAYPLTKHDDTEYQNVFWVYLQYIEKLYKDLTG 5326 Query 893 GVLESFSVTLLEDSTAKFWDESFYANMYEKSAVLQ 927 +L+S+SV L D +AKFW+E FY ++Y LQ Sbjct 5327 HMLDSYSVMLCGDDSAKFWEEGFYRDLYSSPTTLQ 5361 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; AltName: Full=Leader protein; AltName: Full=Non-structural protein 1; Short=nsp1; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like protease nsp3; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL2-PRO; AltName: Full=Papain-like proteinase; Short=PL-PRO; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=Main protease; Short=Mpro; AltName: Full=Non-structural protein 5; Short=nsp5; AltName: Full=SARS coronavirus main proteinase; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=Non-structural protein 12; Short=nsp12; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=Non-structural protein 13; Short=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; AltName: Full=Non-structural protein 14; Short=nsp14; AltName: Full=Proofreading exoribonuclease nsp14; Short=ExoN; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=Non-structural protein 15; Short=nsp15; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=Non-structural protein 16; Short=nsp16 [Severe acute respiratory syndrome coronavirus 2] Sequence ID: P0DTD1.1 Length: 7096 Range 1: 4398 to 5324 Score:1175 bits(3039), Expect:0.0, Method:Compositional matrix adjust., Identities:556/928(60%), Positives:701/928(75%), Gaps:6/928(0%) Query 5 AYLNRVRGSSAARLEPC-NGTDTQHVYRAFDIYNKDVACLGKFLKVNCVRLKNLDKHD-- 61 ++LNRV G SAARL PC GT T VYRAFDIYN VA KFLK NC R + D+ D Sbjct 4398 SFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNL 4457 Query 62 --AFYVVKRCTKSAMEHEQSIYSRLEKCGAIAEHDFFTWKDGRAIYGNVCRKDLTEYTMM 119 +++VVKR T S +HE++IY+ L+ C A+A+HDFF ++ + ++ R+ LT+YTM Sbjct 4458 IDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYTMA 4517 Query 120 DLCYALRNFDENNCDVLKSILIKVGACEESYFNNKVWFDPVENEDIHRVYALLGTIVARA 179 DL YALR+FDE NCD LK IL+ C++ YFN K W+D VEN DI RVYA LG V +A Sbjct 4518 DLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQA 4577 Query 180 MLKCVKFCDAMVEQGIVGVVTLDNQDLNGDFYDFGDFTCSIKGMGVPICTSYYSYMMPVM 239 +LK V+FCDAM GIVGV+TLDNQDLNG++YDFGDF + G GVP+ SYYS +MP++ Sbjct 4578 LLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPIL 4637 Query 240 GMTNCLASECFVKSDIFGEDFKSYDLLEYDFTEHKTALFNKYFKYWGLQYHPNCVDCSDE 299 +T L +E V +D+ + + +DLL+YDFTE + LF++YFKYW YHPNCV+C D+ Sbjct 4638 TLTRALTAESHVDTDL-TKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDD 4696 Query 300 QCIVHCANFNTLFSTTIPITAFGPLCRKCWIDGVPLVTTAGYHFKQLGIVWNNDLNLHSS 359 +CI+HCANFN LFST P T+FGPL RK ++DGVP V + GYHF++LG+V N D+NLHSS Sbjct 4697 RCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSS 4756 Query 360 RLSINELLQFCSDPALLIASSPALVDQRTVCFSVAALGTGMTNQTVKPGHFNKEFYDFLL 419 RLS ELL + +DPA+ AS L+D+RT CFSVAAL + QTVKPG+FNK+FYDF + Sbjct 4757 RLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAV 4816 Query 420 EQGFFSEGSELTLKHFFFAQKVDAAVKDFDYYRYNRPTVLDICQARVVYQIVQRYFDIYE 479 +GFF EGS + LKHFFFAQ +AA+ D+DYYRYN PT+ DI Q V ++V +YFD Y+ Sbjct 4817 SKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYD 4876 Query 480 GGCITAKEVVVTNLNKSAGYPLNKFGKAGLYYESLSYEEQDELYAYTKRNILPTMTQLNL 539 GGCI A +V+V NL+KSAG+P NK+GKA LYY+S+SYE+QD L+AYTKRN++PT+TQ+NL Sbjct 4877 GGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNL 4936 Query 540 KYAISGKERARTVGGVSLLSTMTTRQYHQKHLKSIVNTRGASVVIGTTKFYGGWDNMLKN 599 KYAIS K RARTV GVS+ STMT RQ+HQK LKSI TRGA+VVIGT+KFYGGW NMLK Sbjct 4937 KYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKT 4996 Query 600 LIDGVENPCLMGWDYPKCDRALPNMIRMISAMILGSKHTTCCSSTDRFFRLCNELAQVLT 659 + VENP LMGWDYPKCDRA+PNM+R++++++L KHTTCCS + RF+RL NE AQVL+ Sbjct 4997 VYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLS 5056 Query 660 EVVYSNGGFYLKPGGTTSGDATTAYANSVFNIFQAVSANVNKLLSVDSNVCHNLEVKQLQ 719 E+V G Y+KPGGT+SGDATTAYANSVFNI QAV+ANVN LLS D N + V+ LQ Sbjct 5057 EMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQ 5116 Query 720 RKLYECCYRSTIVDDQFVVEYYGYLRKHFSMMILSDDGVVCYNNDYASLGYVADLNAFKA 779 +LYEC YR+ VD FV E+Y YLRKHFSMMILSDD VVC+N+ YAS G VA + FK+ Sbjct 5117 HRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKS 5176 Query 780 VLYYQNNVFMSASKCWIEPDINKGPHEFCSQHTMQIVDKEGTYYLPYPDPSRILSAGVFV 839 VLYYQNNVFMS +KCW E D+ KGPHEFCSQHTM + + YLPYPDPSRIL AG FV Sbjct 5177 VLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFV 5236 Query 840 DDVVKTDAVVLLERYVSLAIDAYPLSKHENPEYKKVFYVLLDWVKHLYKTLNAGVLESFS 899 DD+VKTD +++ER+VSLAIDAYPL+KH N EY VF++ L +++ L+ L +L+ +S Sbjct 5237 DDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYS 5296 Query 900 VTLLEDSTAKFWDESFYANMYEKSAVLQ 927 V L D+T+++W+ FY MY VLQ Sbjct 5297 VMLTNDNTSRYWEPEFYEAMYTPHTVLQ 5324 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=nsp16 [Bat SARS coronavirus HKU3] Sequence ID: P0C6W2.1 Length: 7067 Range 1: 4370 to 5295 Score:1174 bits(3037), Expect:0.0, Method:Compositional matrix adjust., Identities:553/927(60%), Positives:704/927(75%), Gaps:6/927(0%) Query 6 YLNRVRGSSAARLEPC-NGTDTQHVYRAFDIYNKDVACLGKFLKVNCVRLKNLDKH---- 60 +LNRV G SAARL PC GT T VYRAFDIYN+ VA KFLK NC R + D+ Sbjct 4370 FLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNEKVAGFAKFLKTNCCRFQEKDEEGNLL 4429 Query 61 DAFYVVKRCTKSAMEHEQSIYSRLEKCGAIAEHDFFTWKDGRAIYGNVCRKDLTEYTMMD 120 D+++VVKR T S +HE++IY+ +++C A+A HDFF ++ + ++ R+ LT+YTM D Sbjct 4430 DSYFVVKRHTMSNYQHEETIYNLIKECPAVAVHDFFKFRVDGDMVPHISRQRLTKYTMAD 4489 Query 121 LCYALRNFDENNCDVLKSILIKVGACEESYFNNKVWFDPVENEDIHRVYALLGTIVARAM 180 L YALR+FDE NCD LK IL+ C+++YFN K W+D VEN D+ RVYA LG V RA+ Sbjct 4490 LVYALRHFDEGNCDTLKEILVTYNCCDDNYFNKKDWYDFVENPDVLRVYANLGERVRRAL 4549 Query 181 LKCVKFCDAMVEQGIVGVVTLDNQDLNGDFYDFGDFTCSIKGMGVPICTSYYSYMMPVMG 240 LK V+FCDAM + GIVGV+TLDNQDLNG++YDFGDF G GVPI SYYS +MP++ Sbjct 4550 LKTVQFCDAMRDAGIVGVLTLDNQDLNGNWYDFGDFVQVAPGCGVPIVDSYYSLLMPILT 4609 Query 241 MTNCLASECFVKSDIFGEDFKSYDLLEYDFTEHKTALFNKYFKYWGLQYHPNCVDCSDEQ 300 +T LA+E + +D+ + +DLL+YDFTE + LF++YFKYW YHPNC++C D++ Sbjct 4610 LTKALAAESHMDADL-AKPLVKWDLLKYDFTEERLCLFDRYFKYWDQTYHPNCINCLDDR 4668 Query 301 CIVHCANFNTLFSTTIPITAFGPLCRKCWIDGVPLVTTAGYHFKQLGIVWNNDLNLHSSR 360 CI+HCANFN LFST P T+FGPL RK ++DGVP V + GYHF++LG+V N D+NLHSSR Sbjct 4669 CILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSR 4728 Query 361 LSINELLQFCSDPALLIASSPALVDQRTVCFSVAALGTGMTNQTVKPGHFNKEFYDFLLE 420 LS ELL + +DPA+ AS L+D+RT CFSVAAL + QTVKPG+FNK+FYDF + Sbjct 4729 LSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAVS 4788 Query 421 QGFFSEGSELTLKHFFFAQKVDAAVKDFDYYRYNRPTVLDICQARVVYQIVQRYFDIYEG 480 +GFF EGS + LKHFFFAQ +AA+ D+DYYRYN PT+ DI Q V ++V +YFD Y+G Sbjct 4789 KGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDG 4848 Query 481 GCITAKEVVVTNLNKSAGYPLNKFGKAGLYYESLSYEEQDELYAYTKRNILPTMTQLNLK 540 GCI A +V+V NL+KSAG+P NK+GKA LYY+S+SYE+QD L+AYTKRN++PT+TQ+NLK Sbjct 4849 GCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLK 4908 Query 541 YAISGKERARTVGGVSLLSTMTTRQYHQKHLKSIVNTRGASVVIGTTKFYGGWDNMLKNL 600 YAIS K RARTV GVS+ STMT RQ+HQK LKSI TRGA+VVIGT+KFYGGW NMLK + Sbjct 4909 YAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTV 4968 Query 601 IDGVENPCLMGWDYPKCDRALPNMIRMISAMILGSKHTTCCSSTDRFFRLCNELAQVLTE 660 VE+P LMGWDYPKCDRA+PNM+R+++++IL KH+TCC+ + RF+RL NE AQVL+E Sbjct 4969 YSDVESPHLMGWDYPKCDRAMPNMLRIMASLILARKHSTCCNLSHRFYRLANECAQVLSE 5028 Query 661 VVYSNGGFYLKPGGTTSGDATTAYANSVFNIFQAVSANVNKLLSVDSNVCHNLEVKQLQR 720 +V G Y+KPGGT+SGDATTAYANSVFNI QAV+ANVN LLS D N + V+ LQ Sbjct 5029 MVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQH 5088 Query 721 KLYECCYRSTIVDDQFVVEYYGYLRKHFSMMILSDDGVVCYNNDYASLGYVADLNAFKAV 780 +LYEC YR+ VD +FV E+Y YLRKHFSMMILSDD VVCYN++YA+ G VA + FKAV Sbjct 5089 RLYECLYRNRDVDHEFVDEFYAYLRKHFSMMILSDDAVVCYNSNYAAQGLVASIKNFKAV 5148 Query 781 LYYQNNVFMSASKCWIEPDINKGPHEFCSQHTMQIVDKEGTYYLPYPDPSRILSAGVFVD 840 LYYQNNVFMS +KCW E D+ +GPHEFCSQHTM + + YLPYPDPSRIL AG FVD Sbjct 5149 LYYQNNVFMSEAKCWTETDLTRGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVD 5208 Query 841 DVVKTDAVVLLERYVSLAIDAYPLSKHENPEYKKVFYVLLDWVKHLYKTLNAGVLESFSV 900 D+VKTD +++ER+VSLAIDAYPL+KH N EY VF++ L +++ L+ L +L+ +SV Sbjct 5209 DIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYSV 5268 Query 901 TLLEDSTAKFWDESFYANMYEKSAVLQ 927 L D+T+++W+ FY MY VLQ Sbjct 5269 MLTNDNTSRYWEPEFYEAMYTPHTVLQ 5295 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=nsp16 [Pipistrellus bat coronavirus HKU5] Sequence ID: P0C6W4.1 Length: 7182 Range 1: 4468 to 5401 Score:1172 bits(3031), Expect:0.0, Method:Compositional matrix adjust., Identities:558/935(60%), Positives:711/935(76%), Gaps:9/935(0%) Query 1 STDMAYLNRVRGSSA-ARLEPC-NGTDTQHVYRAFDI--YNKDVACLGKFLKVNCVRLKN 56 S D +LNRVRGS AR+EPC +G T V+RAFDI Y VA +GK+ K N R Sbjct 4468 SKDSNFLNRVRGSIVNARIEPCASGLTTDVVFRAFDICNYKAKVAGIGKYYKTNTCRFVE 4527 Query 57 LD----KHDAFYVVKRCTKSAMEHEQSIYSRLEKCGAIAEHDFFTWKDGRAIYGNVCRKD 112 +D + D+F+VVKR T E E+ Y ++ C A+A HDFF + + ++ R+ Sbjct 4528 VDDEGHRLDSFFVVKRHTMENYELEKRCYDLVKDCDAVAVHDFFIFDVDKVKTPHIVRQR 4587 Query 113 LTEYTMMDLCYALRNFDENNCDVLKSILIKVGACEESYFNNKVWFDPVENEDIHRVYALL 172 LTEYTMMDL YALR+FD+NNC+VLKSIL+K G C+ SYF+NK+WFD VEN ++ VY L Sbjct 4588 LTEYTMMDLVYALRHFDQNNCEVLKSILVKYGCCDASYFDNKLWFDFVENPNVISVYHKL 4647 Query 173 GTIVARAMLKCVKFCDAMVEQGIVGVVTLDNQDLNGDFYDFGDFTCSIKGMGVPICTSYY 232 G + +A+L VKFCD MV+ G+VGV+TLDNQDLNG +YDFGDF + G GV I SYY Sbjct 4648 GERIRQAVLNTVKFCDQMVKSGLVGVLTLDNQDLNGKWYDFGDFVITQPGAGVAIVDSYY 4707 Query 233 SYMMPVMGMTNCLASECFVKSDIFGEDFKSYDLLEYDFTEHKTALFNKYFKYWGLQYHPN 292 SY+MPV+ MTNCLA+E D+ + + LLEYD+T++K LF KYFK W QYHPN Sbjct 4708 SYLMPVLSMTNCLAAETHRDCDL-TKPLIEWPLLEYDYTDYKIGLFEKYFKXWDQQYHPN 4766 Query 293 CVDCSDEQCIVHCANFNTLFSTTIPITAFGPLCRKCWIDGVPLVTTAGYHFKQLGIVWNN 352 CV+C+D++C++HCANFN LFS T+P T+FGP+ RK ++DGVP V + GYH+K+LG+V N Sbjct 4767 CVNCTDDRCVLHCANFNVLFSMTLPGTSFGPIVRKIFVDGVPFVISCGYHYKELGLVMNM 4826 Query 353 DLNLHSSRLSINELLQFCSDPALLIASSPALVDQRTVCFSVAALGTGMTNQTVKPGHFNK 412 D++LH RLS+ EL+ + +DPA+ IAS+ AL D RT CFSVAAL TG+T QTV+PG+FNK Sbjct 4827 DVSLHRHRLSLKELMMYAADPAMHIASASALWDLRTPCFSVAALTTGLTFQTVRPGNFNK 4886 Query 413 EFYDFLLEQGFFSEGSELTLKHFFFAQKVDAAVKDFDYYRYNRPTVLDICQARVVYQIVQ 472 +FYDF++ +GFF EGS +TL+HFFFAQ AA+ D+ YY YN PT+ DI Q ++V Sbjct 4887 DFYDFVVSKGFFKEGSSVTLRHFFFAQDGHAAITDYSYYAYNLPTMCDIKQMLFCMEVVD 4946 Query 473 RYFDIYEGGCITAKEVVVTNLNKSAGYPLNKFGKAGLYYESLSYEEQDELYAYTKRNILP 532 RYF+IY+GGC+ A EV+V NL+KSAG+P NKFGKA +YYESLSY+EQDEL+A TKRN+LP Sbjct 4947 RYFEIYDGGCLNASEVIVNNLDKSAGHPFNKFGKARVYYESLSYQEQDELFAMTKRNVLP 5006 Query 533 TMTQLNLKYAISGKERARTVGGVSLLSTMTTRQYHQKHLKSIVNTRGASVVIGTTKFYGG 592 T+TQ+NLKYAIS K RARTV GVS+LSTMT RQYHQK LKS+ TRG++ VIGTTKFYGG Sbjct 5007 TITQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGSTCVIGTTKFYGG 5066 Query 593 WDNMLKNLIDGVENPCLMGWDYPKCDRALPNMIRMISAMILGSKHTTCCSSTDRFFRLCN 652 WD MLK L V+NP LMGWDYPKCDRA+PNM R+ +++IL KH+TCC++TDRF+RL N Sbjct 5067 WDFMLKTLYKDVDNPHLMGWDYPKCDRAMPNMCRIFASLILARKHSTCCTNTDRFYRLAN 5126 Query 653 ELAQVLTEVVYSNGGFYLKPGGTTSGDATTAYANSVFNIFQAVSANVNKLLSVDSNVCHN 712 E AQVL+E V GG+Y+KPGGT+SGDATTAYANSVFNI QA +ANV+ L+ + N + Sbjct 5127 ECAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMGANGNTIVD 5186 Query 713 LEVKQLQRKLYECCYRSTIVDDQFVVEYYGYLRKHFSMMILSDDGVVCYNNDYASLGYVA 772 EVK +Q +LY YR + D +FV YY +L KHFSMMILSDDGVVCYN+DYA+ GY+A Sbjct 5187 EEVKDMQFELYVNVYRKSQPDPKFVDRYYAFLNKHFSMMILSDDGVVCYNSDYATKGYIA 5246 Query 773 DLNAFKAVLYYQNNVFMSASKCWIEPDINKGPHEFCSQHTMQIVDKEGTYYLPYPDPSRI 832 + FK LYYQNNVFMS +KCW+E D+ KGPHEFCSQHT+ I D + Y+LPYPDPSRI Sbjct 5247 SIQNFKETLYYQNNVFMSEAKCWVETDLKKGPHEFCSQHTLFIKDGDDGYFLPYPDPSRI 5306 Query 833 LSAGVFVDDVVKTDAVVLLERYVSLAIDAYPLSKHENPEYKKVFYVLLDWVKHLYKTLNA 892 LSAG FVDD+VKTD +++ER+VSLAIDAYPL+KH++PEY+ VF+V L +++ LYK L Sbjct 5307 LSAGCFVDDIVKTDGTLMVERFVSLAIDAYPLTKHDDPEYQNVFWVYLQYIEKLYKDLTG 5366 Query 893 GVLESFSVTLLEDSTAKFWDESFYANMYEKSAVLQ 927 +L+S+SV L D++AKFW+ESFY ++Y LQ Sbjct 5367 HMLDSYSVMLCGDNSAKFWEESFYRDLYTAPTTLQ 5401 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; AltName: Full=Leader protein; AltName: Full=Non-structural protein 1; Short=nsp1; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like protease nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL2-PRO; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=Main protease; Short=Mpro; AltName: Full=Non-structural protein 5; Short=nsp5; AltName: Full=SARS coronavirus main proteinase; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=Non-structural protein 12; Short=nsp12; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=Non-structural protein 13; Short=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; AltName: Full=Non-structural protein 14; Short=nsp14; AltName: Full=Proofreading exoribonuclease nsp14; Short=ExoN; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=Non-structural protein 15; Short=nsp15; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=Non-structural protein 16; Short=nsp16 [Severe acute respiratory syndrome-related coronavirus] Sequence ID: P0C6X7.1 Length: 7073 Range 1: 4376 to 5301 Score:1170 bits(3027), Expect:0.0, Method:Compositional matrix adjust., Identities:552/927(60%), Positives:700/927(75%), Gaps:6/927(0%) Query 6 YLNRVRGSSAARLEPC-NGTDTQHVYRAFDIYNKDVACLGKFLKVNCVRLKNLDKH---- 60 +LNRV G SAARL PC GT T VYRAFDIYN+ VA KFLK NC R + D+ Sbjct 4376 FLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNEKVAGFAKFLKTNCCRFQEKDEEGNLL 4435 Query 61 DAFYVVKRCTKSAMEHEQSIYSRLEKCGAIAEHDFFTWKDGRAIYGNVCRKDLTEYTMMD 120 D+++VVKR T S +HE++IY+ ++ C A+A HDFF ++ + ++ R+ LT+YTM D Sbjct 4436 DSYFVVKRHTMSNYQHEETIYNLVKDCPAVAVHDFFKFRVDGDMVPHISRQRLTKYTMAD 4495 Query 121 LCYALRNFDENNCDVLKSILIKVGACEESYFNNKVWFDPVENEDIHRVYALLGTIVARAM 180 L YALR+FDE NCD LK IL+ C++ YFN K W+D VEN DI RVYA LG V +++ Sbjct 4496 LVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQSL 4555 Query 181 LKCVKFCDAMVEQGIVGVVTLDNQDLNGDFYDFGDFTCSIKGMGVPICTSYYSYMMPVMG 240 LK V+FCDAM + GIVGV+TLDNQDLNG++YDFGDF G GVPI SYYS +MP++ Sbjct 4556 LKTVQFCDAMRDAGIVGVLTLDNQDLNGNWYDFGDFVQVAPGCGVPIVDSYYSLLMPILT 4615 Query 241 MTNCLASECFVKSDIFGEDFKSYDLLEYDFTEHKTALFNKYFKYWGLQYHPNCVDCSDEQ 300 +T LA+E + +D+ + +DLL+YDFTE + LF++YFKYW YHPNC++C D++ Sbjct 4616 LTRALAAESHMDADL-AKPLIKWDLLKYDFTEERLCLFDRYFKYWDQTYHPNCINCLDDR 4674 Query 301 CIVHCANFNTLFSTTIPITAFGPLCRKCWIDGVPLVTTAGYHFKQLGIVWNNDLNLHSSR 360 CI+HCANFN LFST P T+FGPL RK ++DGVP V + GYHF++LG+V N D+NLHSSR Sbjct 4675 CILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSR 4734 Query 361 LSINELLQFCSDPALLIASSPALVDQRTVCFSVAALGTGMTNQTVKPGHFNKEFYDFLLE 420 LS ELL + +DPA+ AS L+D+RT CFSVAAL + QTVKPG+FNK+FYDF + Sbjct 4735 LSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAVS 4794 Query 421 QGFFSEGSELTLKHFFFAQKVDAAVKDFDYYRYNRPTVLDICQARVVYQIVQRYFDIYEG 480 +GFF EGS + LKHFFFAQ +AA+ D+DYYRYN PT+ DI Q V ++V +YFD Y+G Sbjct 4795 KGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDG 4854 Query 481 GCITAKEVVVTNLNKSAGYPLNKFGKAGLYYESLSYEEQDELYAYTKRNILPTMTQLNLK 540 GCI A +V+V NL+KSAG+P NK+GKA LYY+S+SYE+QD L+AYTKRN++PT+TQ+NLK Sbjct 4855 GCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLK 4914 Query 541 YAISGKERARTVGGVSLLSTMTTRQYHQKHLKSIVNTRGASVVIGTTKFYGGWDNMLKNL 600 YAIS K RARTV GVS+ STMT RQ+HQK LKSI TRGA+VVIGT+KFYGGW NMLK + Sbjct 4915 YAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTV 4974 Query 601 IDGVENPCLMGWDYPKCDRALPNMIRMISAMILGSKHTTCCSSTDRFFRLCNELAQVLTE 660 VE P LMGWDYPKCDRA+PNM+R++++++L KH TCC+ + RF+RL NE AQVL+E Sbjct 4975 YSDVETPHLMGWDYPKCDRAMPNMLRIMASLVLARKHNTCCNLSHRFYRLANECAQVLSE 5034 Query 661 VVYSNGGFYLKPGGTTSGDATTAYANSVFNIFQAVSANVNKLLSVDSNVCHNLEVKQLQR 720 +V G Y+KPGGT+SGDATTAYANSVFNI QAV+ANVN LLS D N + V+ LQ Sbjct 5035 MVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQH 5094 Query 721 KLYECCYRSTIVDDQFVVEYYGYLRKHFSMMILSDDGVVCYNNDYASLGYVADLNAFKAV 780 +LYEC YR+ VD +FV E+Y YLRKHFSMMILSDD VVCYN++YA+ G VA + FKAV Sbjct 5095 RLYECLYRNRDVDHEFVDEFYAYLRKHFSMMILSDDAVVCYNSNYAAQGLVASIKNFKAV 5154 Query 781 LYYQNNVFMSASKCWIEPDINKGPHEFCSQHTMQIVDKEGTYYLPYPDPSRILSAGVFVD 840 LYYQNNVFMS +KCW E D+ KGPHEFCSQHTM + + YLPYPDPSRIL AG FVD Sbjct 5155 LYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVD 5214 Query 841 DVVKTDAVVLLERYVSLAIDAYPLSKHENPEYKKVFYVLLDWVKHLYKTLNAGVLESFSV 900 D+VKTD +++ER+VSLAIDAYPL+KH N EY VF++ L +++ L+ L +L+ +SV Sbjct 5215 DIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYSV 5274 Query 901 TLLEDSTAKFWDESFYANMYEKSAVLQ 927 L D+T+++W+ FY MY VLQ Sbjct 5275 MLTNDNTSRYWEPEFYEAMYTPHTVLQ 5301 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=nsp16 [Bat CoV 279/2005] Sequence ID: P0C6V9.1 Length: 7079 Range 1: 4382 to 5307 Score:1169 bits(3025), Expect:0.0, Method:Compositional matrix adjust., Identities:552/927(60%), Positives:701/927(75%), Gaps:6/927(0%) Query 6 YLNRVRGSSAARLEPC-NGTDTQHVYRAFDIYNKDVACLGKFLKVNCVRLKNLDKH---- 60 +LNRV G SAARL PC GT T VYRAFDIYN+ VA KFLK NC R + D+ Sbjct 4382 FLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNERVAGFAKFLKTNCCRFQEKDEEGNLL 4441 Query 61 DAFYVVKRCTKSAMEHEQSIYSRLEKCGAIAEHDFFTWKDGRAIYGNVCRKDLTEYTMMD 120 D+++VVKR T S +HE++IY+ +++C A+A HDFF ++ + ++ R+ LT+YTM D Sbjct 4442 DSYFVVKRHTMSNYQHEETIYNLVKECPAVAVHDFFKFRVDGDMVPHISRQRLTKYTMAD 4501 Query 121 LCYALRNFDENNCDVLKSILIKVGACEESYFNNKVWFDPVENEDIHRVYALLGTIVARAM 180 L YALR+FDE NCD LK IL+ C++ YFN K W+D VEN DI RVYA LG V +A+ Sbjct 4502 LVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQAL 4561 Query 181 LKCVKFCDAMVEQGIVGVVTLDNQDLNGDFYDFGDFTCSIKGMGVPICTSYYSYMMPVMG 240 LK V+FCDAM + GIVGV+TLDNQDLNG++YDFGDF G GVPI SYYS +MP++ Sbjct 4562 LKTVQFCDAMRDAGIVGVLTLDNQDLNGNWYDFGDFVQVAPGCGVPIVDSYYSLLMPILT 4621 Query 241 MTNCLASECFVKSDIFGEDFKSYDLLEYDFTEHKTALFNKYFKYWGLQYHPNCVDCSDEQ 300 +T LA+E + +D+ + +DLL+YDFTE + LF++YFKYW YHPNC++C D++ Sbjct 4622 LTKALAAESHMDADL-AKPLIKWDLLKYDFTEERLCLFDRYFKYWDQTYHPNCINCLDDR 4680 Query 301 CIVHCANFNTLFSTTIPITAFGPLCRKCWIDGVPLVTTAGYHFKQLGIVWNNDLNLHSSR 360 CI+HCANFN LFST P T+FGPL RK ++DGVP V + GYHF++LG+V N D+NLHSSR Sbjct 4681 CILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSR 4740 Query 361 LSINELLQFCSDPALLIASSPALVDQRTVCFSVAALGTGMTNQTVKPGHFNKEFYDFLLE 420 LS ELL + +DPA+ AS L+D+RT CFSVAAL + QTVKPG+FNK+FYDF + Sbjct 4741 LSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAVS 4800 Query 421 QGFFSEGSELTLKHFFFAQKVDAAVKDFDYYRYNRPTVLDICQARVVYQIVQRYFDIYEG 480 +GFF EGS + LKHFFFAQ +AA+ D+DYYRYN PT+ DI Q V ++V +YFD Y+G Sbjct 4801 KGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDG 4860 Query 481 GCITAKEVVVTNLNKSAGYPLNKFGKAGLYYESLSYEEQDELYAYTKRNILPTMTQLNLK 540 GCI A +V+V NL+KSAG+P NK+GKA LYY+S+SYE+QD L+AYTKRN++PT+TQ+NLK Sbjct 4861 GCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDVLFAYTKRNVIPTITQMNLK 4920 Query 541 YAISGKERARTVGGVSLLSTMTTRQYHQKHLKSIVNTRGASVVIGTTKFYGGWDNMLKNL 600 YAIS K RARTV GVS+ STMT RQ+HQK LKSI TRGA+VVIGT+KFYGGW NMLK + Sbjct 4921 YAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTV 4980 Query 601 IDGVENPCLMGWDYPKCDRALPNMIRMISAMILGSKHTTCCSSTDRFFRLCNELAQVLTE 660 VE P LMGWDYPKCDRA+PNM+R++++++L KH+TCC+ + RF+RL NE AQVL+E Sbjct 4981 YSDVETPHLMGWDYPKCDRAMPNMLRIMASLVLARKHSTCCNLSHRFYRLANECAQVLSE 5040 Query 661 VVYSNGGFYLKPGGTTSGDATTAYANSVFNIFQAVSANVNKLLSVDSNVCHNLEVKQLQR 720 +V G Y+KPGGT+SGDATTAYANSVFNI QAV+ANVN LLS D N + V+ LQ Sbjct 5041 MVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQH 5100 Query 721 KLYECCYRSTIVDDQFVVEYYGYLRKHFSMMILSDDGVVCYNNDYASLGYVADLNAFKAV 780 +LYEC YR+ VD +FV E+Y YLRKHFSMMILSDD VVCYN++YA+ G VA + FKAV Sbjct 5101 RLYECLYRNRDVDHEFVDEFYAYLRKHFSMMILSDDAVVCYNSNYAAQGLVASIKNFKAV 5160 Query 781 LYYQNNVFMSASKCWIEPDINKGPHEFCSQHTMQIVDKEGTYYLPYPDPSRILSAGVFVD 840 YYQNNVFMS +KCW E D+ KGPHEFCSQHTM + + YLPYPDPSRIL AG FVD Sbjct 5161 HYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVD 5220 Query 841 DVVKTDAVVLLERYVSLAIDAYPLSKHENPEYKKVFYVLLDWVKHLYKTLNAGVLESFSV 900 D+VKTD +++ER+VSLAIDAYPL+KH N EY VF++ L +++ L+ L +L+ +SV Sbjct 5221 DIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYSV 5280 Query 901 TLLEDSTAKFWDESFYANMYEKSAVLQ 927 L D+T+++W+ FY MY VLQ Sbjct 5281 MLTNDNTSRYWEPEFYEAMYTPHTVLQ 5307 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=nsp16 [Bat SARS CoV Rp3/2004] Sequence ID: P0C6W6.1 Length: 7071 Range 1: 4374 to 5299 Score:1168 bits(3021), Expect:0.0, Method:Compositional matrix adjust., Identities:551/927(59%), Positives:699/927(75%), Gaps:6/927(0%) Query 6 YLNRVRGSSAARLEPC-NGTDTQHVYRAFDIYNKDVACLGKFLKVNCVRLKNLDKH---- 60 +LNRV G SAARL PC G T VYRAFDIYN+ VA KFLK NC R + D+ Sbjct 4374 FLNRVCGVSAARLTPCGTGISTDVVYRAFDIYNEKVAGFAKFLKTNCCRFQEKDEEGNLL 4433 Query 61 DAFYVVKRCTKSAMEHEQSIYSRLEKCGAIAEHDFFTWKDGRAIYGNVCRKDLTEYTMMD 120 D+++VVKR T S +HE++IY+ ++ C A+A HDFF ++ + ++ R+ LT+YTM D Sbjct 4434 DSYFVVKRHTMSNYQHEETIYNLVKDCPAVAVHDFFKFRVDGDMVPHISRQRLTKYTMAD 4493 Query 121 LCYALRNFDENNCDVLKSILIKVGACEESYFNNKVWFDPVENEDIHRVYALLGTIVARAM 180 L YALR+FDE NCD LK IL+ C++ YFN K W+D VEN DI RVYA LG V +A+ Sbjct 4494 LVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQAL 4553 Query 181 LKCVKFCDAMVEQGIVGVVTLDNQDLNGDFYDFGDFTCSIKGMGVPICTSYYSYMMPVMG 240 LK V+FCDAM + GIVGV+TLDNQDLNG++YDFGDF G GVPI SYYS +MP++ Sbjct 4554 LKTVQFCDAMRDAGIVGVLTLDNQDLNGNWYDFGDFVQVAPGCGVPIVDSYYSLLMPILT 4613 Query 241 MTNCLASECFVKSDIFGEDFKSYDLLEYDFTEHKTALFNKYFKYWGLQYHPNCVDCSDEQ 300 +T LA+E + +D+ + +DLL+YDFT + LF++YFKYW YHPNC++C D++ Sbjct 4614 LTRALAAESHMDADL-AKPLIKWDLLKYDFTAERLCLFDRYFKYWDQTYHPNCINCLDDR 4672 Query 301 CIVHCANFNTLFSTTIPITAFGPLCRKCWIDGVPLVTTAGYHFKQLGIVWNNDLNLHSSR 360 CI+HCANFN LFST P T+FGPL RK ++DGVP V + GYHF++LG+V N D+NLHSSR Sbjct 4673 CILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSR 4732 Query 361 LSINELLQFCSDPALLIASSPALVDQRTVCFSVAALGTGMTNQTVKPGHFNKEFYDFLLE 420 LS ELL + +DPA+ AS L+D+RT CFSVAAL + QTVKPG+FNK+FYDF + Sbjct 4733 LSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAVS 4792 Query 421 QGFFSEGSELTLKHFFFAQKVDAAVKDFDYYRYNRPTVLDICQARVVYQIVQRYFDIYEG 480 +GFF EGS + LKHFFFAQ +AA+ D+DYYRYN PT+ DI Q V ++V +YFD Y+G Sbjct 4793 KGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDG 4852 Query 481 GCITAKEVVVTNLNKSAGYPLNKFGKAGLYYESLSYEEQDELYAYTKRNILPTMTQLNLK 540 GCI A +V+V NL+KSAG+P NK+GKA LYY+S+SYE+QD L+AYTKRN++PT+TQ+NLK Sbjct 4853 GCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLK 4912 Query 541 YAISGKERARTVGGVSLLSTMTTRQYHQKHLKSIVNTRGASVVIGTTKFYGGWDNMLKNL 600 YAIS K RARTV GVS+ STMT RQ+HQK LKSI TRGA+VVIGT+KFYGGW NMLK + Sbjct 4913 YAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTV 4972 Query 601 IDGVENPCLMGWDYPKCDRALPNMIRMISAMILGSKHTTCCSSTDRFFRLCNELAQVLTE 660 VE P LMGWDYPKCDRA+PNM+R++++++L KH+TCC+ + RF+RL NE AQVL+E Sbjct 4973 YSDVETPHLMGWDYPKCDRAMPNMLRIMASLVLARKHSTCCNLSHRFYRLANECAQVLSE 5032 Query 661 VVYSNGGFYLKPGGTTSGDATTAYANSVFNIFQAVSANVNKLLSVDSNVCHNLEVKQLQR 720 +V G Y+KPGGT+SGDATTAYANSVFNI QAV+ANVN LLS D N + V+ LQ Sbjct 5033 MVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQH 5092 Query 721 KLYECCYRSTIVDDQFVVEYYGYLRKHFSMMILSDDGVVCYNNDYASLGYVADLNAFKAV 780 +LYEC YR+ VD +FV E+Y YLRKHFSMMILSDD VVCYN++YA+ G VA + FKAV Sbjct 5093 RLYECLYRNRDVDHEFVGEFYAYLRKHFSMMILSDDAVVCYNSNYAAQGLVASIKNFKAV 5152 Query 781 LYYQNNVFMSASKCWIEPDINKGPHEFCSQHTMQIVDKEGTYYLPYPDPSRILSAGVFVD 840 LYYQNNVFMS +KCW E D+ KGPHEFCSQHTM + + YLPYPDPSRIL AG FVD Sbjct 5153 LYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVD 5212 Query 841 DVVKTDAVVLLERYVSLAIDAYPLSKHENPEYKKVFYVLLDWVKHLYKTLNAGVLESFSV 900 D+VKTD +++ER+VSLAIDAYPL+KH N EY VF++ L +++ L+ L +L+ +SV Sbjct 5213 DIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYSV 5272 Query 901 TLLEDSTAKFWDESFYANMYEKSAVLQ 927 L D+T+++W+ FY MY VLQ Sbjct 5273 MLTNDNTSRYWEPEFYEAMYTPHTVLQ 5299 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=nsp16 [Rousettus bat coronavirus HKU9] Sequence ID: P0C6W5.1 Length: 6930 Range 1: 4234 to 5165 Score:1167 bits(3020), Expect:0.0, Method:Compositional matrix adjust., Identities:553/933(59%), Positives:705/933(75%), Gaps:7/933(0%) Query 1 STDMAYLNRVRGSSA-ARLEPC-NGTDTQHVYRAFDIYNKDVACLGKFLKVNCVRLKNLD 58 + D +LNRVRG+S ARL P +G V RAFDI N VA G LK NC R + LD Sbjct 4234 ARDECFLNRVRGTSGVARLVPLGSGVQPDIVLRAFDICNTKVAGFGLHLKNNCCRYQELD 4293 Query 59 ----KHDAFYVVKRCTKSAMEHEQSIYSRLEKCGAIAEHDFFTWKDGRAIYGNVCRKDLT 114 + D+++VVKR T+S EQ Y +L+ CG +A HDFF + + +V R+ LT Sbjct 4294 ADGTQLDSYFVVKRHTESNYLLEQRCYEKLKDCGVVARHDFFKFNIEGVMTPHVSRERLT 4353 Query 115 EYTMMDLCYALRNFDENNCDVLKSILIKVGACEESYFNNKVWFDPVENEDIHRVYALLGT 174 +YTM DL Y+LR+FD NNCD LK IL+ G C YF+ K W+DPVEN DI RVY LG Sbjct 4354 KYTMADLVYSLRHFDNNNCDTLKEILVLRGCCTADYFDRKDWYDPVENPDIIRVYHNLGE 4413 Query 175 IVARAMLKCVKFCDAMVEQGIVGVVTLDNQDLNGDFYDFGDFTCSIKGMGVPICTSYYSY 234 V +A+L VK D+MVEQG++GV+TLDNQDLNG +YDFGDF G GV + +YYS Sbjct 4414 TVRKAVLSAVKMADSMVEQGLIGVLTLDNQDLNGQWYDFGDFIEGPAGAGVAVMDTYYSL 4473 Query 235 MMPVMGMTNCLASECFVKSDIFGEDFKSYDLLEYDFTEHKTALFNKYFKYWGLQYHPNCV 294 MPV MTN LA+EC V D F + + +D+ +YD+T+ K +LF+KYFKYW +QYHPNCV Sbjct 4474 AMPVYTMTNMLAAECHVDGD-FSKPKRVWDICKYDYTQFKYSLFSKYFKYWDMQYHPNCV 4532 Query 295 DCSDEQCIVHCANFNTLFSTTIPITAFGPLCRKCWIDGVPLVTTAGYHFKQLGIVWNNDL 354 C+D++CI+HCANFN LFS +P T+FGPL +K ++DGVP V + GYH+++LG+V N D+ Sbjct 4533 ACADDRCILHCANFNILFSMVLPNTSFGPLVQKIYVDGVPFVVSTGYHYRELGVVMNQDI 4592 Query 355 NLHSSRLSINELLQFCSDPALLIASSPALVDQRTVCFSVAALGTGMTNQTVKPGHFNKEF 414 H+ RLS+ ELL + +DPA+ +A+S AL D+RTVC SVAA+ TG+T QTVKPG FN++F Sbjct 4593 RQHAQRLSLRELLVYAADPAMHVAASNALADKRTVCMSVAAMTTGVTFQTVKPGQFNEDF 4652 Query 415 YDFLLEQGFFSEGSELTLKHFFFAQKVDAAVKDFDYYRYNRPTVLDICQARVVYQIVQRY 474 Y+F ++ GFF EGS ++ KHFF+AQ +AA+ D+DYYRYN PT+ DI Q ++V +Y Sbjct 4653 YNFAVKCGFFKEGSTISFKHFFYAQDGNAAISDYDYYRYNLPTMCDIKQLLFSLEVVDKY 4712 Query 475 FDIYEGGCITAKEVVVTNLNKSAGYPLNKFGKAGLYYESLSYEEQDELYAYTKRNILPTM 534 FD Y+GGC+ A +VVV N +KSAG+P NKFGKA LYYESLSY +QDEL+AYTKRN+LPT+ Sbjct 4713 FDCYDGGCLQASQVVVANYDKSAGFPFNKFGKARLYYESLSYADQDELFAYTKRNVLPTI 4772 Query 535 TQLNLKYAISGKERARTVGGVSLLSTMTTRQYHQKHLKSIVNTRGASVVIGTTKFYGGWD 594 TQ+NLKYAIS K RARTV GVS+ STMT RQ+HQK LKSI RGASVVIGTTKFYGGW+ Sbjct 4773 TQMNLKYAISAKNRARTVAGVSIASTMTNRQFHQKMLKSIAAARGASVVIGTTKFYGGWN 4832 Query 595 NMLKNLIDGVENPCLMGWDYPKCDRALPNMIRMISAMILGSKHTTCCSSTDRFFRLCNEL 654 ML+ L +GVENP LMGWDYPKCDRA+PN++R+ +++IL KH TCC++++RF+RL NE Sbjct 4833 RMLRTLCEGVENPHLMGWDYPKCDRAMPNLLRIFASLILARKHATCCNASERFYRLANEC 4892 Query 655 AQVLTEVVYSNGGFYLKPGGTTSGDATTAYANSVFNIFQAVSANVNKLLSVDSNVCHNLE 714 AQVL+E+V GGFY+KPGGT+SGD+TTAYANSVFNI QAVSAN+N LS+D N + Sbjct 4893 AQVLSEMVLCGGGFYVKPGGTSSGDSTTAYANSVFNICQAVSANLNTFLSIDGNKIYTTY 4952 Query 715 VKQLQRKLYECCYRSTIVDDQFVVEYYGYLRKHFSMMILSDDGVVCYNNDYASLGYVADL 774 V++LQR+LY YRS VD++ V++YY YLRKHFSMMILSDDGVVCYN DYA GYVAD+ Sbjct 4953 VQELQRRLYLGIYRSNTVDNELVLDYYNYLRKHFSMMILSDDGVVCYNADYAQKGYVADI 5012 Query 775 NAFKAVLYYQNNVFMSASKCWIEPDINKGPHEFCSQHTMQIVDKEGTYYLPYPDPSRILS 834 FK +LY+QNNVFMS SKCW+EPDI KGPHEFCSQHTM + K YLPYPDPSRIL Sbjct 5013 QGFKELLYFQNNVFMSESKCWVEPDITKGPHEFCSQHTMLVDMKGEQVYLPYPDPSRILG 5072 Query 835 AGVFVDDVVKTDAVVLLERYVSLAIDAYPLSKHENPEYKKVFYVLLDWVKHLYKTLNAGV 894 AG FVDD++KTD +++ERYVSLAIDAYPL+KH +PEY+ VF+ L ++K L++ L + Sbjct 5073 AGCFVDDLLKTDGTLMMERYVSLAIDAYPLTKHPDPEYQNVFWCYLQYIKKLHEELTGHL 5132 Query 895 LESFSVTLLEDSTAKFWDESFYANMYEKSAVLQ 927 L+++SV L D+ +K+W+ FY NMY +SA LQ Sbjct 5133 LDTYSVMLASDNASKYWEVEFYENMYMESATLQ 5165 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=nsp16 [Betacoronavirus England 1] Sequence ID: K9N7C7.1 Length: 7078 Range 1: 4378 to 5310 Score:1150 bits(2976), Expect:0.0, Method:Compositional matrix adjust., Identities:553/935(59%), Positives:702/935(75%), Gaps:10/935(1%) Query 1 STDMAYLNRVRGSSA-ARLEPCN-GTDTQHVYRAFDI--YNKDVACLGKFLKVNCVRLKN 56 S D +L RVRGS AR+EPC+ G T V+RAFDI Y VA +GK+ K N R Sbjct 4378 SKDSNFLKRVRGSIVNARIEPCSSGLSTDVVFRAFDICNYKAKVAGIGKYYKTNTCRFVE 4437 Query 57 LDKH----DAFYVVKRCTKSAMEHEQSIYSRLEKCGAIAEHDFFTWKDGRAIYGNVCRKD 112 LD D+++VVKR T E E+ Y L C A+A HDFF + + ++ R+ Sbjct 4438 LDDQGHHLDSYFVVKRHTMENYELEKHCYDLLRDCDAVAPHDFFIFDVDKVKTPHIVRQR 4497 Query 113 LTEYTMMDLCYALRNFDENNCDVLKSILIKVGACEESYFNNKVWFDPVENEDIHRVYALL 172 LTEYTMMDL YALR+FD+N+ +VLK+IL+K G C+ +YF NK+WFD VEN + VY L Sbjct 4498 LTEYTMMDLVYALRHFDQNS-EVLKAILVKYGCCDVTYFENKLWFDFVENPSVIGVYHKL 4556 Query 173 GTIVARAMLKCVKFCDAMVEQGIVGVVTLDNQDLNGDFYDFGDFTCSIKGMGVPICTSYY 232 G V +A+L VKFCD MV+ G+VGV+TLDNQDLNG +YDFGDF + G GV I SYY Sbjct 4557 GERVRQAILNTVKFCDHMVKAGLVGVLTLDNQDLNGKWYDFGDFVITQPGSGVAIVDSYY 4616 Query 233 SYMMPVMGMTNCLASECFVKSDIFGEDFKSYDLLEYDFTEHKTALFNKYFKYWGLQYHPN 292 SY+MPV+ MT+CLA+E D F + + L EYDFT++K LF KYFKYW YH N Sbjct 4617 SYLMPVLSMTDCLAAETHRDCD-FNKPLIEWPLTEYDFTDYKVQLFEKYFKYWDQTYHAN 4675 Query 293 CVDCSDEQCIVHCANFNTLFSTTIPITAFGPLCRKCWIDGVPLVTTAGYHFKQLGIVWNN 352 CV+C+D++C++HCANFN LF+ T+P T FGP+ RK ++DGVP V + GYH+K+LG+V N Sbjct 4676 CVNCTDDRCVLHCANFNVLFAMTMPKTCFGPIVRKIFVDGVPFVVSCGYHYKELGLVMNM 4735 Query 353 DLNLHSSRLSINELLQFCSDPALLIASSPALVDQRTVCFSVAALGTGMTNQTVKPGHFNK 412 D++LH RLS+ EL+ + +DPA+ IASS A +D RT CFSVAAL TG+T QTV+PG+FN+ Sbjct 4736 DVSLHRHRLSLKELMMYAADPAMHIASSNAFLDLRTSCFSVAALTTGLTFQTVRPGNFNQ 4795 Query 413 EFYDFLLEQGFFSEGSELTLKHFFFAQKVDAAVKDFDYYRYNRPTVLDICQARVVYQIVQ 472 +FYDF++ +GFF EGS +TLKHFFFAQ +AA+ D++YY YN PT+ DI Q ++V Sbjct 4796 DFYDFVVSKGFFKEGSSVTLKHFFFAQDGNAAITDYNYYSYNLPTMCDIKQMLFCMEVVN 4855 Query 473 RYFDIYEGGCITAKEVVVTNLNKSAGYPLNKFGKAGLYYESLSYEEQDELYAYTKRNILP 532 +YF+IY+GGC+ A EVVV NL+KSAG+P NKFGKA +YYES+SY+EQDEL+A TKRN++P Sbjct 4856 KYFEIYDGGCLNASEVVVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAMTKRNVIP 4915 Query 533 TMTQLNLKYAISGKERARTVGGVSLLSTMTTRQYHQKHLKSIVNTRGASVVIGTTKFYGG 592 TMTQ+NLKYAIS K RARTV GVS+LSTMT RQYHQK LKS+ TRGA+ VIGTTKFYGG Sbjct 4916 TMTQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTTKFYGG 4975 Query 593 WDNMLKNLIDGVENPCLMGWDYPKCDRALPNMIRMISAMILGSKHTTCCSSTDRFFRLCN 652 WD MLK L V+NP LMGWDYPKCDRA+PNM R+ +++IL KH TCC++ DRF+RL N Sbjct 4976 WDFMLKTLYKDVDNPHLMGWDYPKCDRAMPNMCRIFASLILARKHGTCCTTRDRFYRLAN 5035 Query 653 ELAQVLTEVVYSNGGFYLKPGGTTSGDATTAYANSVFNIFQAVSANVNKLLSVDSNVCHN 712 E AQVL+E V GG+Y+KPGGT+SGDATTAYANSVFNI QA +ANV+ L+ + N + Sbjct 5036 ECAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMGANGNKIVD 5095 Query 713 LEVKQLQRKLYECCYRSTIVDDQFVVEYYGYLRKHFSMMILSDDGVVCYNNDYASLGYVA 772 EVK +Q LY YRST D +FV +YY +L KHFSMMILSDDGVVCYN+DYA+ GY+A Sbjct 5096 KEVKDMQFDLYVNVYRSTSPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGYIA 5155 Query 773 DLNAFKAVLYYQNNVFMSASKCWIEPDINKGPHEFCSQHTMQIVDKEGTYYLPYPDPSRI 832 + FK LYYQNNVFMS +KCW+E D+ KGPHEFCSQHT+ I D + Y+LPYPDPSRI Sbjct 5156 GIQNFKETLYYQNNVFMSEAKCWVETDLKKGPHEFCSQHTLYIKDGDDGYFLPYPDPSRI 5215 Query 833 LSAGVFVDDVVKTDAVVLLERYVSLAIDAYPLSKHENPEYKKVFYVLLDWVKHLYKTLNA 892 LSAG FVDD+VKTD +++ER+VSLAIDAYPL+KHE+ EY+ VF+V L +++ LYK L Sbjct 5216 LSAGCFVDDIVKTDGTLMVERFVSLAIDAYPLTKHEDIEYQNVFWVYLQYIEKLYKDLTG 5275 Query 893 GVLESFSVTLLEDSTAKFWDESFYANMYEKSAVLQ 927 +L+S+SV L D++AKFW+E+FY ++Y LQ Sbjct 5276 HMLDSYSVMLCGDNSAKFWEEAFYRDLYSSPTTLQ 5310 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=nsp16 [Bovine respiratory coronavirus (strain 98TXSF-110-LUN)] Sequence ID: P0C6W8.1 Length: 7094 Range 1: 4370 to 5297 Score:1144 bits(2959), Expect:0.0, Method:Compositional matrix adjust., Identities:552/933(59%), Positives:698/933(74%), Gaps:11/933(1%) Query 1 STDMAYLNRVRGSSA-ARLEPC-NGTDTQHVYRAFDIYNKDVACLGKFLKVNCVRLK--- 55 S D +LNRVRG+S ARL PC +G T RAFDI N VA +G LKVNC R + Sbjct 4370 SKDTNFLNRVRGTSVDARLVPCASGLSTDVQLRAFDICNASVAGIGLHLKVNCCRFQRVD 4429 Query 56 -NLDKHDAFYVVKRCTKSAMEHEQSIYSRLEKCGAIAEHDFFTWKDGRAIYGNVCRKDLT 114 N DK D F+VVKR + E Y R++ C +AEHDFFT+ + ++ RKDLT Sbjct 4430 ENGDKLDQFFVVKRTDLTIYNREMECYERVKDCKFVAEHDFFTFDVEGSRVPHIVRKDLT 4489 Query 115 EYTMMDLCYALRNFDENNCDVLKSILIKVGACEESYFNNKVWFDPVENEDIHRVYALLGT 174 +YTM+DLCYALR+FD N+C +L IL CE+SYF K W+D VEN DI VY LG Sbjct 4490 KYTMLDLCYALRHFDRNDCMLLCDILSIYAGCEQSYFTKKDWYDFVENPDIINVYKKLGP 4549 Query 175 IVARAMLKCVKFCDAMVEQGIVGVVTLDNQDLNGDFYDFGDFTCSIKGMGVPICTSYYSY 234 I RA++ +F D +VE G+VG++TLDNQDLNG +YDFGD+ + G GV I SYYSY Sbjct 4550 IFNRALVSATEFADKLVEVGLVGILTLDNQDLNGKWYDFGDYVIAAPGCGVAIADSYYSY 4609 Query 235 MMPVMGMTNCLASECFVKSDIFGEDFKSYDLLEYDFTEHKTALFNKYFKYWGLQYHPNCV 294 MMP++ M + L E +V + ++ +DL++YDFT++K LFNKYFK+W + YHPN V Sbjct 4610 MMPMLTMCHALDCELYVNNA-----YRLFDLVQYDFTDYKLELFNKYFKHWSMPYHPNTV 4664 Query 295 DCSDEQCIVHCANFNTLFSTTIPITAFGPLCRKCWIDGVPLVTTAGYHFKQLGIVWNNDL 354 DC D++CI+HCANFN LFS +P T FGPL R+ ++DGVP V + GYH+K+LGIV N D+ Sbjct 4665 DCQDDRCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGIVMNMDV 4724 Query 355 NLHSSRLSINELLQFCSDPALLIASSPALVDQRTVCFSVAALGTGMTNQTVKPGHFNKEF 414 + H RLS+ +LL + +DPAL +AS+ AL D RT CFSVAA+ +G+ QTVKPG+FN++F Sbjct 4725 DTHRYRLSLKDLLLYAADPALHVASASALYDLRTCCFSVAAITSGVKFQTVKPGNFNQDF 4784 Query 415 YDFLLEQGFFSEGSELTLKHFFFAQKVDAAVKDFDYYRYNRPTVLDICQARVVYQIVQRY 474 YDF+L +G EGS + LKHFFF Q +AA+ D++YY+YN PT++DI Q V ++V +Y Sbjct 4785 YDFILSKGLLKEGSSVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKY 4844 Query 475 FDIYEGGCITAKEVVVTNLNKSAGYPLNKFGKAGLYYESLSYEEQDELYAYTKRNILPTM 534 F+IY+GGCI A +V+V N +KSAGYP NKFGKA LYYE+LS+EEQDE+YAYTKRN+LPT+ Sbjct 4845 FEIYDGGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQDEIYAYTKRNVLPTL 4904 Query 535 TQLNLKYAISGKERARTVGGVSLLSTMTTRQYHQKHLKSIVNTRGASVVIGTTKFYGGWD 594 TQ+NLKYAIS K RARTV GVS+LSTMT R +HQK LKSI TRG VVIGTTKFYGGWD Sbjct 4905 TQMNLKYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWD 4964 Query 595 NMLKNLIDGVENPCLMGWDYPKCDRALPNMIRMISAMILGSKHTTCCSSTDRFFRLCNEL 654 +ML+ LI V+NP LMGWDYPKCDRA+PN++R++S+++L KH CCS +DRF+RL NE Sbjct 4965 DMLRRLIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEACCSQSDRFYRLANEC 5024 Query 655 AQVLTEVVYSNGGFYLKPGGTTSGDATTAYANSVFNIFQAVSANVNKLLSVDSNVCHNLE 714 AQVL+E+V G +Y+KPGGT+SGDATTA+ANSVFNI QAVSANV L+S + N +L Sbjct 5025 AQVLSEIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVSANVCALMSCNGNKIEDLS 5084 Query 715 VKQLQRKLYECCYRSTIVDDQFVVEYYGYLRKHFSMMILSDDGVVCYNNDYASLGYVADL 774 ++ LQ++LY YRS +VD FV EYY +L KHFSMMILSDDGVVCYN+DYAS GY+A++ Sbjct 5085 IRALQKRLYSHVYRSDMVDSTFVTEYYEFLNKHFSMMILSDDGVVCYNSDYASKGYIANI 5144 Query 775 NAFKAVLYYQNNVFMSASKCWIEPDINKGPHEFCSQHTMQIVDKEGTYYLPYPDPSRILS 834 +AF+ VLYYQNNVFMS SKCW+E DIN GPHEFCSQHTM + YLPYPDPSRIL Sbjct 5145 SAFQQVLYYQNNVFMSESKCWVENDINNGPHEFCSQHTMLVKMDGDDVYLPYPDPSRILG 5204 Query 835 AGVFVDDVVKTDAVVLLERYVSLAIDAYPLSKHENPEYKKVFYVLLDWVKHLYKTLNAGV 894 AG FVDD++KTD+V+L+ER+VSLAIDAYPL HEN EY+KVF V L+++K LY L + Sbjct 5205 AGCFVDDLLKTDSVLLIERFVSLAIDAYPLVYHENEEYQKVFRVYLEYIKKLYNDLGNQI 5264 Query 895 LESFSVTLLEDSTAKFWDESFYANMYEKSAVLQ 927 L+S+SV L KF DESFY NMY +SAV+Q Sbjct 5265 LDSYSVILSTCDGQKFTDESFYKNMYLRSAVMQ 5297 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Bovine enteric coronavirus (strain 98TXSF-110-ENT)] Sequence ID: P0C6W7.1 Length: 7094 Range 1: 4370 to 5297 Score:1144 bits(2959), Expect:0.0, Method:Compositional matrix adjust., Identities:552/933(59%), Positives:698/933(74%), Gaps:11/933(1%) Query 1 STDMAYLNRVRGSSA-ARLEPC-NGTDTQHVYRAFDIYNKDVACLGKFLKVNCVRLK--- 55 S D +LNRVRG+S ARL PC +G T RAFDI N VA +G LKVNC R + Sbjct 4370 SKDTNFLNRVRGTSVDARLVPCASGLSTDVQLRAFDICNASVAGIGLHLKVNCCRFQRVD 4429 Query 56 -NLDKHDAFYVVKRCTKSAMEHEQSIYSRLEKCGAIAEHDFFTWKDGRAIYGNVCRKDLT 114 N DK D F+VVKR + E Y R++ C +AEHDFFT+ + ++ RKDLT Sbjct 4430 ENGDKLDQFFVVKRTDLTIYNREMECYERVKDCKFVAEHDFFTFDVEGSRVPHIVRKDLT 4489 Query 115 EYTMMDLCYALRNFDENNCDVLKSILIKVGACEESYFNNKVWFDPVENEDIHRVYALLGT 174 +YTM+DLCYALR+FD N+C +L IL CE+SYF K W+D VEN DI VY LG Sbjct 4490 KYTMLDLCYALRHFDRNDCMLLCDILSIYAGCEQSYFTKKDWYDFVENPDIINVYKKLGP 4549 Query 175 IVARAMLKCVKFCDAMVEQGIVGVVTLDNQDLNGDFYDFGDFTCSIKGMGVPICTSYYSY 234 I RA++ +F D +VE G+VG++TLDNQDLNG +YDFGD+ + G GV I SYYSY Sbjct 4550 IFNRALVSATEFADKLVEVGLVGILTLDNQDLNGKWYDFGDYVIAAPGCGVAIADSYYSY 4609 Query 235 MMPVMGMTNCLASECFVKSDIFGEDFKSYDLLEYDFTEHKTALFNKYFKYWGLQYHPNCV 294 MMP++ M + L E +V + ++ +DL++YDFT++K LFNKYFK+W + YHPN V Sbjct 4610 MMPMLTMCHALDCELYVNNA-----YRLFDLVQYDFTDYKLELFNKYFKHWSMPYHPNTV 4664 Query 295 DCSDEQCIVHCANFNTLFSTTIPITAFGPLCRKCWIDGVPLVTTAGYHFKQLGIVWNNDL 354 DC D++CI+HCANFN LFS +P T FGPL R+ ++DGVP V + GYH+K+LGIV N D+ Sbjct 4665 DCQDDRCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGIVMNMDV 4724 Query 355 NLHSSRLSINELLQFCSDPALLIASSPALVDQRTVCFSVAALGTGMTNQTVKPGHFNKEF 414 + H RLS+ +LL + +DPAL +AS+ AL D RT CFSVAA+ +G+ QTVKPG+FN++F Sbjct 4725 DTHRYRLSLKDLLLYAADPALHVASASALYDLRTCCFSVAAITSGVKFQTVKPGNFNQDF 4784 Query 415 YDFLLEQGFFSEGSELTLKHFFFAQKVDAAVKDFDYYRYNRPTVLDICQARVVYQIVQRY 474 YDF+L +G EGS + LKHFFF Q +AA+ D++YY+YN PT++DI Q V ++V +Y Sbjct 4785 YDFILSKGLLKEGSSVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKY 4844 Query 475 FDIYEGGCITAKEVVVTNLNKSAGYPLNKFGKAGLYYESLSYEEQDELYAYTKRNILPTM 534 F+IY+GGCI A +V+V N +KSAGYP NKFGKA LYYE+LS+EEQDE+YAYTKRN+LPT+ Sbjct 4845 FEIYDGGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQDEIYAYTKRNVLPTL 4904 Query 535 TQLNLKYAISGKERARTVGGVSLLSTMTTRQYHQKHLKSIVNTRGASVVIGTTKFYGGWD 594 TQ+NLKYAIS K RARTV GVS+LSTMT R +HQK LKSI TRG VVIGTTKFYGGWD Sbjct 4905 TQMNLKYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWD 4964 Query 595 NMLKNLIDGVENPCLMGWDYPKCDRALPNMIRMISAMILGSKHTTCCSSTDRFFRLCNEL 654 +ML+ LI V+NP LMGWDYPKCDRA+PN++R++S+++L KH CCS +DRF+RL NE Sbjct 4965 DMLRRLIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEACCSQSDRFYRLANEC 5024 Query 655 AQVLTEVVYSNGGFYLKPGGTTSGDATTAYANSVFNIFQAVSANVNKLLSVDSNVCHNLE 714 AQVL+E+V G +Y+KPGGT+SGDATTA+ANSVFNI QAVSANV L+S + N +L Sbjct 5025 AQVLSEIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVSANVCALMSCNGNKIEDLS 5084 Query 715 VKQLQRKLYECCYRSTIVDDQFVVEYYGYLRKHFSMMILSDDGVVCYNNDYASLGYVADL 774 ++ LQ++LY YRS +VD FV EYY +L KHFSMMILSDDGVVCYN+DYAS GY+A++ Sbjct 5085 IRALQKRLYSHVYRSDMVDSTFVTEYYEFLNKHFSMMILSDDGVVCYNSDYASKGYIANI 5144 Query 775 NAFKAVLYYQNNVFMSASKCWIEPDINKGPHEFCSQHTMQIVDKEGTYYLPYPDPSRILS 834 +AF+ VLYYQNNVFMS SKCW+E DIN GPHEFCSQHTM + YLPYPDPSRIL Sbjct 5145 SAFQQVLYYQNNVFMSESKCWVENDINNGPHEFCSQHTMLVKMDGDDVYLPYPDPSRILG 5204 Query 835 AGVFVDDVVKTDAVVLLERYVSLAIDAYPLSKHENPEYKKVFYVLLDWVKHLYKTLNAGV 894 AG FVDD++KTD+V+L+ER+VSLAIDAYPL HEN EY+KVF V L+++K LY L + Sbjct 5205 AGCFVDDLLKTDSVLLIERFVSLAIDAYPLVYHENEEYQKVFRVYLEYIKKLYNDLGNQI 5264 Query 895 LESFSVTLLEDSTAKFWDESFYANMYEKSAVLQ 927 L+S+SV L KF DESFY NMY +SAV+Q Sbjct 5265 LDSYSVILSTCDGQKFTDESFYKNMYLRSAVMQ 5297 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=nsp16 [Human coronavirus OC43] Sequence ID: P0C6X6.1 Length: 7095 Range 1: 4370 to 5297 Score:1143 bits(2956), Expect:0.0, Method:Compositional matrix adjust., Identities:553/933(59%), Positives:698/933(74%), Gaps:11/933(1%) Query 1 STDMAYLNRVRGSSA-ARLEPC-NGTDTQHVYRAFDIYNKDVACLGKFLKVNCVRLK--- 55 S D +LNRVRG+S ARL PC +G T RAFDIYN VA +G LKVNC R + Sbjct 4370 SKDTNFLNRVRGASVDARLVPCASGLSTDVQLRAFDIYNASVAGIGLHLKVNCCRFQRVD 4429 Query 56 -NLDKHDAFYVVKRCTKSAMEHEQSIYSRLEKCGAIAEHDFFTWKDGRAIYGNVCRKDLT 114 N DK D F+VVKR + E Y R++ C +AEHDFFT+ + ++ RKDLT Sbjct 4430 ENGDKLDQFFVVKRTDLTIYNREMKCYERVKDCKFVAEHDFFTFDVEGSRVPHIVRKDLT 4489 Query 115 EYTMMDLCYALRNFDENNCDVLKSILIKVGACEESYFNNKVWFDPVENEDIHRVYALLGT 174 +YTM+DLCYALR+FD N+C +L IL CE+SYF K W+D VEN DI VY LG Sbjct 4490 KYTMLDLCYALRHFDRNDCMLLCDILSIYAGCEQSYFTKKDWYDFVENPDIINVYKKLGP 4549 Query 175 IVARAMLKCVKFCDAMVEQGIVGVVTLDNQDLNGDFYDFGDFTCSIKGMGVPICTSYYSY 234 I RA++ +F D +VE G+VGV+TLDNQDLNG +YDFGD+ + G GV I SYYSY Sbjct 4550 IFNRALVSATEFADKLVEVGLVGVLTLDNQDLNGKWYDFGDYVIAAPGCGVAIADSYYSY 4609 Query 235 MMPVMGMTNCLASECFVKSDIFGEDFKSYDLLEYDFTEHKTALFNKYFKYWGLQYHPNCV 294 +MP++ M + L E +V + ++ +DL++YDFT++K LFNKYFK+W + YHPN V Sbjct 4610 IMPMLTMCHALDCELYVNNA-----YRLFDLVQYDFTDYKLELFNKYFKHWSMPYHPNTV 4664 Query 295 DCSDEQCIVHCANFNTLFSTTIPITAFGPLCRKCWIDGVPLVTTAGYHFKQLGIVWNNDL 354 DC D++CI+HCANFN LFS +P T FGPL R+ ++DGVP V + GYH+K+LGIV N D+ Sbjct 4665 DCQDDRCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGIVMNMDV 4724 Query 355 NLHSSRLSINELLQFCSDPALLIASSPALVDQRTVCFSVAALGTGMTNQTVKPGHFNKEF 414 + H RLS+ +LL + +DPAL +AS+ AL D RT CFSVAA+ +G+ QTVKPG+FN++F Sbjct 4725 DTHRYRLSLKDLLLYAADPALHVASASALYDLRTCCFSVAAITSGVKFQTVKPGNFNQDF 4784 Query 415 YDFLLEQGFFSEGSELTLKHFFFAQKVDAAVKDFDYYRYNRPTVLDICQARVVYQIVQRY 474 YDF+L +G EGS + LKHFFF Q +AA+ D++YY+YN PT++DI Q V ++V +Y Sbjct 4785 YDFVLSKGLLKEGSSVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKY 4844 Query 475 FDIYEGGCITAKEVVVTNLNKSAGYPLNKFGKAGLYYESLSYEEQDELYAYTKRNILPTM 534 F+IY+GGCI A +V+V N +KSAGYP NKFGKA LYYE+LS+EEQDE+YAYTKRN+LPT+ Sbjct 4845 FEIYDGGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQDEIYAYTKRNVLPTL 4904 Query 535 TQLNLKYAISGKERARTVGGVSLLSTMTTRQYHQKHLKSIVNTRGASVVIGTTKFYGGWD 594 TQ+NLKYAIS K RARTV GVS+LSTMT R +HQK LKSI TRG VVIGTTKFYGGWD Sbjct 4905 TQMNLKYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWD 4964 Query 595 NMLKNLIDGVENPCLMGWDYPKCDRALPNMIRMISAMILGSKHTTCCSSTDRFFRLCNEL 654 +ML+ LI V+NP LMGWDYPKCDRA+PN++R++S+++L KH TCCS +DRF+RL NE Sbjct 4965 DMLRRLIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHETCCSQSDRFYRLANEC 5024 Query 655 AQVLTEVVYSNGGFYLKPGGTTSGDATTAYANSVFNIFQAVSANVNKLLSVDSNVCHNLE 714 AQVL+E+V G +Y+KPGGT+SGDATTA+ANSVFNI QAVSANV L+S + N +L Sbjct 5025 AQVLSEIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVSANVCALMSCNGNKIEDLS 5084 Query 715 VKQLQRKLYECCYRSTIVDDQFVVEYYGYLRKHFSMMILSDDGVVCYNNDYASLGYVADL 774 ++ LQ++LY YRS VD FV EYY +L KHFSMMILSDDGVVCYN+DYAS GY+A++ Sbjct 5085 IRALQKRLYSHVYRSDKVDSTFVTEYYEFLNKHFSMMILSDDGVVCYNSDYASKGYIANI 5144 Query 775 NAFKAVLYYQNNVFMSASKCWIEPDINKGPHEFCSQHTMQIVDKEGTYYLPYPDPSRILS 834 +AF+ VLYYQNNVFMS SKCW+E DIN GPHEFCSQHTM + YLPYP+PSRIL Sbjct 5145 SAFQQVLYYQNNVFMSESKCWVEHDINNGPHEFCSQHTMLVKMDGDDVYLPYPNPSRILG 5204 Query 835 AGVFVDDVVKTDAVVLLERYVSLAIDAYPLSKHENPEYKKVFYVLLDWVKHLYKTLNAGV 894 AG FVDD++KTD+V+L+ER+VSLAIDAYPL HEN EY+KVF V L ++K LY L + Sbjct 5205 AGCFVDDLLKTDSVLLIERFVSLAIDAYPLVYHENEEYQKVFRVYLAYIKKLYNDLGNQI 5264 Query 895 LESFSVTLLEDSTAKFWDESFYANMYEKSAVLQ 927 L+S+SV L KF DESFY NMY +SAV+Q Sbjct 5265 LDSYSVILSTCDGQKFTDESFYKNMYLRSAVMQ 5297 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=nsp16 [Bovine coronavirus strain Quebec] Sequence ID: P0C6X0.1 Length: 7059 Range 1: 4370 to 5297 Score:1141 bits(2952), Expect:0.0, Method:Compositional matrix adjust., Identities:551/933(59%), Positives:697/933(74%), Gaps:11/933(1%) Query 1 STDMAYLNRVRGSSA-ARLEPC-NGTDTQHVYRAFDIYNKDVACLGKFLKVNCVRLK--- 55 S D +LNRVRG+S ARL PC +G T RAFDI N VA +G LKVNC R + Sbjct 4370 SKDTNFLNRVRGTSVDARLVPCASGLSTDVQLRAFDICNASVAGIGLHLKVNCCRFQRVD 4429 Query 56 -NLDKHDAFYVVKRCTKSAMEHEQSIYSRLEKCGAIAEHDFFTWKDGRAIYGNVCRKDLT 114 N DK D F+VVKR + E Y R++ C +AEHDFFT+ + ++ RKDLT Sbjct 4430 ENGDKLDQFFVVKRTDLTIYNREMECYERVKDCKFVAEHDFFTFDVEGSRVPHIVRKDLT 4489 Query 115 EYTMMDLCYALRNFDENNCDVLKSILIKVGACEESYFNNKVWFDPVENEDIHRVYALLGT 174 +YTM+DLCYALR+FD N+C +L IL CE+SYF K W+D VEN DI VY LG Sbjct 4490 KYTMLDLCYALRHFDRNDCMLLCDILSIYAGCEQSYFTKKDWYDFVENPDIINVYKKLGP 4549 Query 175 IVARAMLKCVKFCDAMVEQGIVGVVTLDNQDLNGDFYDFGDFTCSIKGMGVPICTSYYSY 234 I RA++ +F D +VE G+VG++TLDNQDLNG +YDFGD+ + G GV I SYYSY Sbjct 4550 IFNRALVSATEFADKLVEVGLVGILTLDNQDLNGKWYDFGDYVIAAPGCGVAIADSYYSY 4609 Query 235 MMPVMGMTNCLASECFVKSDIFGEDFKSYDLLEYDFTEHKTALFNKYFKYWGLQYHPNCV 294 MMP++ M + L E +V + ++ +DL++YDFT++K LFNKYFK+W + YHPN V Sbjct 4610 MMPMLTMCHALDCELYVNNA-----YRLFDLVQYDFTDYKLELFNKYFKHWSMPYHPNTV 4664 Query 295 DCSDEQCIVHCANFNTLFSTTIPITAFGPLCRKCWIDGVPLVTTAGYHFKQLGIVWNNDL 354 DC D++CI+HCANFN LFS +P T FGPL R+ ++DGVP V + GYH+K+LGIV N D+ Sbjct 4665 DCQDDRCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGIVMNMDV 4724 Query 355 NLHSSRLSINELLQFCSDPALLIASSPALVDQRTVCFSVAALGTGMTNQTVKPGHFNKEF 414 + H RLS+ +LL + +DPAL +AS+ AL D RT CFSVAA+ +G+ QTVKPG+FN++F Sbjct 4725 DTHRYRLSLKDLLLYAADPALHVASASALYDLRTCCFSVAAITSGVKFQTVKPGNFNQDF 4784 Query 415 YDFLLEQGFFSEGSELTLKHFFFAQKVDAAVKDFDYYRYNRPTVLDICQARVVYQIVQRY 474 YDF+L +G EGS + LKHFFF Q +AA+ D++YY+YN PT++DI Q V ++V +Y Sbjct 4785 YDFILSKGLLKEGSSVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKY 4844 Query 475 FDIYEGGCITAKEVVVTNLNKSAGYPLNKFGKAGLYYESLSYEEQDELYAYTKRNILPTM 534 F+IY+GGCI A +V+V N +KSAGYP NKFGKA LYYE+LS+EEQDE+YAYTKRN+LPT+ Sbjct 4845 FEIYDGGCIPAAQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQDEIYAYTKRNVLPTL 4904 Query 535 TQLNLKYAISGKERARTVGGVSLLSTMTTRQYHQKHLKSIVNTRGASVVIGTTKFYGGWD 594 TQ+NLKYAIS K RARTV GVS+LSTMT R +HQK LKSI TRG VVIGTTKFYGGWD Sbjct 4905 TQMNLKYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWD 4964 Query 595 NMLKNLIDGVENPCLMGWDYPKCDRALPNMIRMISAMILGSKHTTCCSSTDRFFRLCNEL 654 +ML+ LI V+NP LMGWDYPKCDRA+PN++R++S+++L KH CCS +DRF+RL NE Sbjct 4965 DMLRRLIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEACCSQSDRFYRLANEC 5024 Query 655 AQVLTEVVYSNGGFYLKPGGTTSGDATTAYANSVFNIFQAVSANVNKLLSVDSNVCHNLE 714 AQVL+E+V G +Y+KPGGT+SGDATTA+ANSVFNI QAVSANV L+S + N +L Sbjct 5025 AQVLSEIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVSANVCALMSCNGNKIEDLS 5084 Query 715 VKQLQRKLYECCYRSTIVDDQFVVEYYGYLRKHFSMMILSDDGVVCYNNDYASLGYVADL 774 ++ LQ++LY YRS +VD FV EYY +L KHFSMMILSDDGVVCYN+DYAS GY+A++ Sbjct 5085 IRALQKRLYSHVYRSDMVDSTFVTEYYEFLNKHFSMMILSDDGVVCYNSDYASKGYIANI 5144 Query 775 NAFKAVLYYQNNVFMSASKCWIEPDINKGPHEFCSQHTMQIVDKEGTYYLPYPDPSRILS 834 +AF+ VLYYQNNVFMS SKCW+E DIN GPHEFCSQHTM + YLPYP PSRIL Sbjct 5145 SAFQQVLYYQNNVFMSESKCWVENDINNGPHEFCSQHTMLVKMDGDDVYLPYPVPSRILG 5204 Query 835 AGVFVDDVVKTDAVVLLERYVSLAIDAYPLSKHENPEYKKVFYVLLDWVKHLYKTLNAGV 894 AG FVDD++KTD+V+L+ER+VSLAIDAYPL HEN EY+KVF V L+++K LY L + Sbjct 5205 AGCFVDDLLKTDSVLLIERFVSLAIDAYPLVYHENEEYQKVFRVYLEYIKKLYNELGNQI 5264 Query 895 LESFSVTLLEDSTAKFWDESFYANMYEKSAVLQ 927 L+S+SV L KF DESFY NMY +SAV+Q Sbjct 5265 LDSYSVILSTCDGQKFTDESFYKNMYLRSAVMQ 5297 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=nsp16 [Murine hepatitis virus strain A59] Sequence ID: P0C6X9.1 Length: 7176 Range 1: 4455 to 5382 Score:1141 bits(2951), Expect:0.0, Method:Compositional matrix adjust., Identities:543/933(58%), Positives:700/933(75%), Gaps:11/933(1%) Query 1 STDMAYLNRVRGSSA-ARLEPC-NGTDTQHVYRAFDIYNKDVACLGKFLKVNCVRLKNLD 58 S D +LNR+RG+S ARL PC +G DT RAFDI N + A +G + KVNC R + +D Sbjct 4455 SKDTNFLNRIRGTSVNARLVPCASGLDTDVQLRAFDICNANRAGIGLYYKVNCCRFQRVD 4514 Query 59 ----KHDAFYVVKRCTKSAMEHEQSIYSRLEKCGAIAEHDFFTWKDGRAIYGNVCRKDLT 114 K D F+VVKR E+ Y ++CG +AEH+FFT+ + ++ RKDL+ Sbjct 4515 EDGNKLDKFFVVKRTNLEVYNKEKECYELTKECGVVAEHEFFTFDVEGSRVPHIVRKDLS 4574 Query 115 EYTMMDLCYALRNFDENNCDVLKSILIKVGACEESYFNNKVWFDPVENEDIHRVYALLGT 174 ++TM+DLCYALR+FD N+C LK IL+ CEESYF K W+D VEN DI VY LG Sbjct 4575 KFTMLDLCYALRHFDRNDCSTLKEILLTYAECEESYFQKKDWYDFVENPDIINVYKKLGP 4634 Query 175 IVARAMLKCVKFCDAMVEQGIVGVVTLDNQDLNGDFYDFGDFTCSIKGMGVPICTSYYSY 234 I RA+L KF DA+VE G+VGV+TLDNQDL G +YDFGDF ++ G GV + SYYSY Sbjct 4635 IFNRALLNTAKFADALVEAGLVGVLTLDNQDLYGQWYDFGDFVKTVPGCGVAVADSYYSY 4694 Query 235 MMPVMGMTNCLASECFVKSDIFGEDFKSYDLLEYDFTEHKTALFNKYFKYWGLQYHPNCV 294 MMP++ M + L SE FV ++ +DL++YDFT+ K LF KYFK+W + YHPN Sbjct 4695 MMPMLTMCHALDSELFVNGT-----YREFDLVQYDFTDFKLELFTKYFKHWSMTYHPNTC 4749 Query 295 DCSDEQCIVHCANFNTLFSTTIPITAFGPLCRKCWIDGVPLVTTAGYHFKQLGIVWNNDL 354 +C D++CI+HCANFN LFS +P T FGPL R+ ++DGVP V + GYH+K+LG+V N D+ Sbjct 4750 ECEDDRCIIHCANFNILFSMVLPKTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMNMDV 4809 Query 355 NLHSSRLSINELLQFCSDPALLIASSPALVDQRTVCFSVAALGTGMTNQTVKPGHFNKEF 414 + H RLS+ +LL + +DPAL +AS+ AL+D RT CFSVAA+ +G+ QTVKPG+FN++F Sbjct 4810 DTHRYRLSLKDLLLYAADPALHVASASALLDLRTCCFSVAAITSGVKFQTVKPGNFNQDF 4869 Query 415 YDFLLEQGFFSEGSELTLKHFFFAQKVDAAVKDFDYYRYNRPTVLDICQARVVYQIVQRY 474 Y+F+L +G EGS + LKHFFF Q +AA+ D++YY+YN PT++DI Q V ++V +Y Sbjct 4870 YEFILSKGLLKEGSSVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVNKY 4929 Query 475 FDIYEGGCITAKEVVVTNLNKSAGYPLNKFGKAGLYYESLSYEEQDELYAYTKRNILPTM 534 F+IYEGGCI A +V+V N +KSAGYP NKFGKA LYYE+LS+EEQDE+YAYTKRN+LPT+ Sbjct 4930 FEIYEGGCIPATQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQDEIYAYTKRNVLPTL 4989 Query 535 TQLNLKYAISGKERARTVGGVSLLSTMTTRQYHQKHLKSIVNTRGASVVIGTTKFYGGWD 594 TQ+NLKYAIS K RARTV GVS+LSTMT R +HQK LKSI TRG VVIGTTKFYGGWD Sbjct 4990 TQMNLKYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWD 5049 Query 595 NMLKNLIDGVENPCLMGWDYPKCDRALPNMIRMISAMILGSKHTTCCSSTDRFFRLCNEL 654 +ML+ LI V++P LMGWDYPKCDRA+PN++R++S+++L KH +CCS TDRF+RL NE Sbjct 5050 DMLRRLIKDVDSPVLMGWDYPKCDRAMPNILRIVSSLVLARKHDSCCSHTDRFYRLANEC 5109 Query 655 AQVLTEVVYSNGGFYLKPGGTTSGDATTAYANSVFNIFQAVSANVNKLLSVDSNVCHNLE 714 AQVL+E+V G +Y+KPGGT+SGDATTA+ANSVFNI QAVSANV L++ + + +L Sbjct 5110 AQVLSEIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVSANVCSLMACNGHKIEDLS 5169 Query 715 VKQLQRKLYECCYRSTIVDDQFVVEYYGYLRKHFSMMILSDDGVVCYNNDYASLGYVADL 774 +++LQ++LY YR+ VD FV EYY +L KHFSMMILSDDGVVCYN+++AS GY+A++ Sbjct 5170 IRELQKRLYSNVYRADHVDPAFVSEYYEFLNKHFSMMILSDDGVVCYNSEFASKGYIANI 5229 Query 775 NAFKAVLYYQNNVFMSASKCWIEPDINKGPHEFCSQHTMQIVDKEGTYYLPYPDPSRILS 834 +AF+ VLYYQNNVFMS +KCW+E DI KGPHEFCSQHTM + YLPYPDPSRIL Sbjct 5230 SAFQQVLYYQNNVFMSEAKCWVETDIEKGPHEFCSQHTMLVKMDGDEVYLPYPDPSRILG 5289 Query 835 AGVFVDDVVKTDAVVLLERYVSLAIDAYPLSKHENPEYKKVFYVLLDWVKHLYKTLNAGV 894 AG FVDD++KTD+V+L+ER+VSLAIDAYPL HENPEY+ VF V L+++K LY L + Sbjct 5290 AGCFVDDLLKTDSVLLIERFVSLAIDAYPLVYHENPEYQNVFRVYLEYIKKLYNDLGNQI 5349 Query 895 LESFSVTLLEDSTAKFWDESFYANMYEKSAVLQ 927 L+S+SV L KF DE+FY NMY +SAVLQ Sbjct 5350 LDSYSVILSTCDGQKFTDETFYKNMYLRSAVLQ 5382 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=nsp16 [Bovine coronavirus Mebus] Sequence ID: P0C6W9.1 Length: 7094 Range 1: 4370 to 5297 Score:1141 bits(2951), Expect:0.0, Method:Compositional matrix adjust., Identities:551/933(59%), Positives:697/933(74%), Gaps:11/933(1%) Query 1 STDMAYLNRVRGSSA-ARLEPC-NGTDTQHVYRAFDIYNKDVACLGKFLKVNCVRLK--- 55 S D +LNRVRG+S ARL PC +G T RAFDI N VA +G LKVNC R + Sbjct 4370 SKDTNFLNRVRGTSVDARLVPCASGLSTDVQLRAFDICNASVAGIGLHLKVNCCRFQRVD 4429 Query 56 -NLDKHDAFYVVKRCTKSAMEHEQSIYSRLEKCGAIAEHDFFTWKDGRAIYGNVCRKDLT 114 N DK D F+VVKR + E Y R++ C +AEHDFFT+ + ++ RKDLT Sbjct 4430 ENGDKLDQFFVVKRTDLTIYNREMECYERVKDCKFVAEHDFFTFDVEGSRVPHIVRKDLT 4489 Query 115 EYTMMDLCYALRNFDENNCDVLKSILIKVGACEESYFNNKVWFDPVENEDIHRVYALLGT 174 +YTM+DLCYALR+FD N+C +L IL CE+SYF K W+D VEN DI VY LG Sbjct 4490 KYTMLDLCYALRHFDRNDCMLLCDILSIYAGCEQSYFTKKDWYDFVENPDIINVYKKLGP 4549 Query 175 IVARAMLKCVKFCDAMVEQGIVGVVTLDNQDLNGDFYDFGDFTCSIKGMGVPICTSYYSY 234 I RA++ +F D +VE G+VG++TLDNQDLNG +YDFGD+ + G GV I SYYSY Sbjct 4550 IFNRALVSATEFADKLVEVGLVGILTLDNQDLNGKWYDFGDYVIAAPGCGVAIADSYYSY 4609 Query 235 MMPVMGMTNCLASECFVKSDIFGEDFKSYDLLEYDFTEHKTALFNKYFKYWGLQYHPNCV 294 MMP++ M + L E +V + ++ +DL++YDFT++K LFNKYFK+W + YHPN V Sbjct 4610 MMPMLTMCHALDCELYVNNA-----YRLFDLVQYDFTDYKLELFNKYFKHWSMPYHPNTV 4664 Query 295 DCSDEQCIVHCANFNTLFSTTIPITAFGPLCRKCWIDGVPLVTTAGYHFKQLGIVWNNDL 354 DC D++CI+ CANFN LFS +P T FGPL R+ ++DGVP V + GYH+K+LGIV N D+ Sbjct 4665 DCQDDRCIIRCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGIVMNMDV 4724 Query 355 NLHSSRLSINELLQFCSDPALLIASSPALVDQRTVCFSVAALGTGMTNQTVKPGHFNKEF 414 + H RLS+ +LL + +DPAL +AS+ AL D RT CFSVAA+ +G+ QTVKPG+FN++F Sbjct 4725 DTHRYRLSLKDLLLYAADPALHVASASALYDLRTCCFSVAAITSGVKFQTVKPGNFNQDF 4784 Query 415 YDFLLEQGFFSEGSELTLKHFFFAQKVDAAVKDFDYYRYNRPTVLDICQARVVYQIVQRY 474 YDF+L +G EGS + LKHFFF Q +AA+ D++YY+YN PT++DI Q V ++V +Y Sbjct 4785 YDFILSKGLLKEGSSVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKY 4844 Query 475 FDIYEGGCITAKEVVVTNLNKSAGYPLNKFGKAGLYYESLSYEEQDELYAYTKRNILPTM 534 F+IY+GGCI A +V+V N +KSAGYP NKFGKA LYYE+LS+EEQDE+YAYTKRN+LPT+ Sbjct 4845 FEIYDGGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQDEIYAYTKRNVLPTL 4904 Query 535 TQLNLKYAISGKERARTVGGVSLLSTMTTRQYHQKHLKSIVNTRGASVVIGTTKFYGGWD 594 TQ+NLKYAIS K RARTV GVS+LSTMT R +HQK LKSI TRG VVIGTTKFYGGWD Sbjct 4905 TQMNLKYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWD 4964 Query 595 NMLKNLIDGVENPCLMGWDYPKCDRALPNMIRMISAMILGSKHTTCCSSTDRFFRLCNEL 654 +ML+ LI V+NP LMGWDYPKCDRA+PN++R++S+++L KH CCS +DRF+RL NE Sbjct 4965 DMLRRLIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEACCSQSDRFYRLANEY 5024 Query 655 AQVLTEVVYSNGGFYLKPGGTTSGDATTAYANSVFNIFQAVSANVNKLLSVDSNVCHNLE 714 AQVL+E+V G +Y+KPGGT+SGDATTA+ANSVFNI QAVSANV L+S + N +L Sbjct 5025 AQVLSEIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVSANVCALMSCNGNKIEDLS 5084 Query 715 VKQLQRKLYECCYRSTIVDDQFVVEYYGYLRKHFSMMILSDDGVVCYNNDYASLGYVADL 774 ++ LQ++LY YRS +VD FV EYY +L KHFSMMILSDDGVVCYN+DYAS GY+A++ Sbjct 5085 IRALQKRLYSHVYRSDMVDSTFVTEYYEFLNKHFSMMILSDDGVVCYNSDYASKGYIANI 5144 Query 775 NAFKAVLYYQNNVFMSASKCWIEPDINKGPHEFCSQHTMQIVDKEGTYYLPYPDPSRILS 834 +AF+ VLYYQNNVFMS SKCW+E DIN GPHEFCSQHTM + YLPYPDPSRIL Sbjct 5145 SAFQQVLYYQNNVFMSESKCWVENDINNGPHEFCSQHTMLVKMDGDDVYLPYPDPSRILG 5204 Query 835 AGVFVDDVVKTDAVVLLERYVSLAIDAYPLSKHENPEYKKVFYVLLDWVKHLYKTLNAGV 894 AG FVDD++KTD+V+L+ER+VSLAIDAYPL HEN EY+KVF V L+++K LY L + Sbjct 5205 AGCFVDDLLKTDSVLLIERFVSLAIDAYPLVYHENEEYQKVFRVYLEYIKKLYNELGNQI 5264 Query 895 LESFSVTLLEDSTAKFWDESFYANMYEKSAVLQ 927 L+S+SV L KF DESFY NMY +SAV+Q Sbjct 5265 LDSYSVILSTCDGQKFTDESFYKNMYLRSAVMQ 5297 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=nsp16 [Murine hepatitis virus strain 2] Sequence ID: P0C6X8.1 Length: 7124 Range 1: 4403 to 5330 Score:1137 bits(2942), Expect:0.0, Method:Compositional matrix adjust., Identities:541/933(58%), Positives:699/933(74%), Gaps:11/933(1%) Query 1 STDMAYLNRVRGSSA-ARLEPC-NGTDTQHVYRAFDIYNKDVACLGKFLKVNCVRLKNLD 58 S D +LNRVRG+S ARL PC +G DT RAFDI N + A +G + KVNC R + D Sbjct 4403 SKDTNFLNRVRGTSVNARLVPCASGLDTDVQLRAFDICNANRAGIGLYYKVNCCRFQRAD 4462 Query 59 KH----DAFYVVKRCTKSAMEHEQSIYSRLEKCGAIAEHDFFTWKDGRAIYGNVCRKDLT 114 + D F+V+KR E+ Y ++CG +AEH+FFT+ + ++ RKDL+ Sbjct 4463 EDGNTLDKFFVIKRTNLEVYNKEKECYELTKECGVVAEHEFFTFDVEGSRVPHIVRKDLS 4522 Query 115 EYTMMDLCYALRNFDENNCDVLKSILIKVGACEESYFNNKVWFDPVENEDIHRVYALLGT 174 +YTM+DLCYALR+FD N+C LK IL+ C+ESYF K W+D VEN DI VY LG Sbjct 4523 KYTMLDLCYALRHFDRNDCSTLKEILLTYAECDESYFQKKDWYDFVENSDIINVYKKLGP 4582 Query 175 IVARAMLKCVKFCDAMVEQGIVGVVTLDNQDLNGDFYDFGDFTCSIKGMGVPICTSYYSY 234 I RA+L KF D +VE G+VGV+TLDNQDL G +YDFGDF ++ G GV + SYYSY Sbjct 4583 IFNRALLNTAKFADTLVEAGLVGVLTLDNQDLYGQWYDFGDFVKTVPGCGVAVADSYYSY 4642 Query 235 MMPVMGMTNCLASECFVKSDIFGEDFKSYDLLEYDFTEHKTALFNKYFKYWGLQYHPNCV 294 MMP++ M + L SE F+ ++ +DL++YDFT+ K LFNKYFKYW + YHPN Sbjct 4643 MMPMLTMCHALDSELFINGT-----YREFDLVQYDFTDFKLELFNKYFKYWSMTYHPNTC 4697 Query 295 DCSDEQCIVHCANFNTLFSTTIPITAFGPLCRKCWIDGVPLVTTAGYHFKQLGIVWNNDL 354 +C D++CI+HCANFN LFS +P T FGPL R+ ++DGVP V + GYH+K+LG+V N D+ Sbjct 4698 ECEDDRCIIHCANFNILFSMVLPKTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMNMDV 4757 Query 355 NLHSSRLSINELLQFCSDPALLIASSPALVDQRTVCFSVAALGTGMTNQTVKPGHFNKEF 414 + H RLS+ +LL + +DPAL +AS+ AL+D RT CFSVAA+ +G+ QTVKPG+FN++F Sbjct 4758 DTHRYRLSLKDLLLYAADPALHVASASALLDLRTCCFSVAAITSGVKFQTVKPGNFNQDF 4817 Query 415 YDFLLEQGFFSEGSELTLKHFFFAQKVDAAVKDFDYYRYNRPTVLDICQARVVYQIVQRY 474 Y+F+L +G EGS + LKHFFF Q +AA+ D++YY+YN PT++DI Q V ++V +Y Sbjct 4818 YEFILSKGLLKEGSSVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVNKY 4877 Query 475 FDIYEGGCITAKEVVVTNLNKSAGYPLNKFGKAGLYYESLSYEEQDELYAYTKRNILPTM 534 F+IY+GGCI A +V+V N +KSAGYP NKFGKA LYYE+LS+EEQDE+YAYTKRN+LPT+ Sbjct 4878 FEIYDGGCIPATQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQDEVYAYTKRNVLPTL 4937 Query 535 TQLNLKYAISGKERARTVGGVSLLSTMTTRQYHQKHLKSIVNTRGASVVIGTTKFYGGWD 594 TQ+NLKYAIS K RARTV GVS+LSTMT R +HQK LKSI TRG VVIGTTKFYGGWD Sbjct 4938 TQMNLKYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWD 4997 Query 595 NMLKNLIDGVENPCLMGWDYPKCDRALPNMIRMISAMILGSKHTTCCSSTDRFFRLCNEL 654 +ML+ LI V++P LMGWDYPKCDRA+PN++R+IS+++L KH +CCS TDRF+RL NE Sbjct 4998 DMLRRLIKDVDSPVLMGWDYPKCDRAMPNILRIISSLVLARKHDSCCSHTDRFYRLANEC 5057 Query 655 AQVLTEVVYSNGGFYLKPGGTTSGDATTAYANSVFNIFQAVSANVNKLLSVDSNVCHNLE 714 AQVL+E+V G +Y+KPGGT+SGDATTA+ANSVFNI QAVSANV L++ + + +L Sbjct 5058 AQVLSEIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVSANVCSLMACNGHKIEDLS 5117 Query 715 VKQLQRKLYECCYRSTIVDDQFVVEYYGYLRKHFSMMILSDDGVVCYNNDYASLGYVADL 774 +++LQ++LY YR+ VD FV EYY +L KHFSMMILSDDGVVCYN+++AS GY+A++ Sbjct 5118 IRELQKRLYSNVYRADHVDPAFVNEYYEFLNKHFSMMILSDDGVVCYNSEFASKGYIANI 5177 Query 775 NAFKAVLYYQNNVFMSASKCWIEPDINKGPHEFCSQHTMQIVDKEGTYYLPYPDPSRILS 834 +AF+ VLYYQNNVFMS +KCW+E DI KGPHEFCSQHTM + YLPYPDPSRIL Sbjct 5178 SAFQQVLYYQNNVFMSEAKCWVETDIEKGPHEFCSQHTMLVKMDGDEVYLPYPDPSRILG 5237 Query 835 AGVFVDDVVKTDAVVLLERYVSLAIDAYPLSKHENPEYKKVFYVLLDWVKHLYKTLNAGV 894 AG FVDD++KTD+V+L+ER+VSLAIDAYPL HENPEY+ VF V L+++K LY L + Sbjct 5238 AGCFVDDLLKTDSVLLIERFVSLAIDAYPLVYHENPEYQNVFRVYLEYIKKLYNDLGNQI 5297 Query 895 LESFSVTLLEDSTAKFWDESFYANMYEKSAVLQ 927 L+S+SV L KF DE+FY NMY +SAV+Q Sbjct 5298 LDSYSVILSTCDGQKFTDETFYKNMYLRSAVMQ 5330 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyl transferase nsp16; AltName: Full=nsp16 [Murine hepatitis virus strain JHM] Sequence ID: P0C6Y0.1 Length: 7180 Range 1: 4461 to 5388 Score:1127 bits(2914), Expect:0.0, Method:Compositional matrix adjust., Identities:538/933(58%), Positives:694/933(74%), Gaps:11/933(1%) Query 1 STDMAYLNRVRGSSA-ARLEPC-NGTDTQHVYRAFDIYNKDVACLGKFLKVNCVRLKNLD 58 S D +LNRVRG+S ARL PC +G DT RAFDI N + A +G + KVNC R + +D Sbjct 4461 SKDTNFLNRVRGTSVNARLVPCASGLDTDVQLRAFDICNANRAGIGLYYKVNCFRFQRVD 4520 Query 59 ----KHDAFYVVKRCTKSAMEHEQSIYSRLEKCGAIAEHDFFTWKDGRAIYGNVCRKDLT 114 K D F+VVKR E+ Y + CG +AEH+FFT+ + ++ RKDL+ Sbjct 4521 EEGNKLDKFFVVKRTNLEVYNKEKECYELTKDCGVVAEHEFFTFDVEGSRVPHIVRKDLS 4580 Query 115 EYTMMDLCYALRNFDENNCDVLKSILIKVGACEESYFNNKVWFDPVENEDIHRVYALLGT 174 ++TM+DLCYALR+FD N+C LK IL+ C+ESYF K W+D VEN DI VY LG Sbjct 4581 KFTMLDLCYALRHFDRNDCSTLKEILLTYAECDESYFQKKDWYDFVENPDIINVYKKLGP 4640 Query 175 IVARAMLKCVKFCDAMVEQGIVGVVTLDNQDLNGDFYDFGDFTCSIKGMGVPICTSYYSY 234 I RA+L F D +VE G+VGV+TLDNQDL G +YDFGDF ++ GV + SYYSY Sbjct 4641 IFNRALLNTANFADTLVEAGLVGVLTLDNQDLYGQWYDFGDFVKTVPCCGVAVADSYYSY 4700 Query 235 MMPVMGMTNCLASECFVKSDIFGEDFKSYDLLEYDFTEHKTALFNKYFKYWGLQYHPNCV 294 MMP++ M + L SE FV ++ +DL++YDFT+ K LFNKYFK+W + YHPN Sbjct 4701 MMPMLTMCHALDSELFVNGT-----YREFDLVQYDFTDFKLELFNKYFKHWSMTYHPNTS 4755 Query 295 DCSDEQCIVHCANFNTLFSTTIPITAFGPLCRKCWIDGVPLVTTAGYHFKQLGIVWNNDL 354 +C D++CI+HCANFN LFS +P T FGPL R+ ++DGVP V + GYH+K+LG+V N D+ Sbjct 4756 ECEDDRCIIHCANFNILFSMVLPKTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMNMDV 4815 Query 355 NLHSSRLSINELLQFCSDPALLIASSPALVDQRTVCFSVAALGTGMTNQTVKPGHFNKEF 414 + H RLS+ +LL + +DPAL +AS+ AL+D RT CFSVAA+ +G+ QTVKPG+FN++F Sbjct 4816 DTHRYRLSLKDLLLYAADPALHVASASALLDLRTCCFSVAAITSGVKFQTVKPGNFNQDF 4875 Query 415 YDFLLEQGFFSEGSELTLKHFFFAQKVDAAVKDFDYYRYNRPTVLDICQARVVYQIVQRY 474 Y+F+L +G EGS + LKHFFF Q +AA+ D++YY+YN PT++DI Q V ++V +Y Sbjct 4876 YEFILSKGLLKEGSSVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVVEVVNKY 4935 Query 475 FDIYEGGCITAKEVVVTNLNKSAGYPLNKFGKAGLYYESLSYEEQDELYAYTKRNILPTM 534 F+IYEGGCI A +V+V N +KSAGYP NKFGKA LYYE+LS+EEQDE+YAYTKRN+LPT+ Sbjct 4936 FEIYEGGCIPATQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQDEIYAYTKRNVLPTL 4995 Query 535 TQLNLKYAISGKERARTVGGVSLLSTMTTRQYHQKHLKSIVNTRGASVVIGTTKFYGGWD 594 TQ+NLKYAIS K RARTV GVS+LSTMT R +HQK LKSI TRG VVIGTTKFYGGWD Sbjct 4996 TQMNLKYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWD 5055 Query 595 NMLKNLIDGVENPCLMGWDYPKCDRALPNMIRMISAMILGSKHTTCCSSTDRFFRLCNEL 654 +ML+ LI V++P LMGWDYPKCDRA+PN++R++S+++L KH +CCS TDRF+RL NE Sbjct 5056 DMLRRLIKDVDSPVLMGWDYPKCDRAMPNILRIVSSLVLARKHDSCCSHTDRFYRLANEC 5115 Query 655 AQVLTEVVYSNGGFYLKPGGTTSGDATTAYANSVFNIFQAVSANVNKLLSVDSNVCHNLE 714 AQVL E+V G +Y+KPGGT+SGDATTA+ANSVFNI QAVSANV L++ + + +L Sbjct 5116 AQVLGEIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVSANVCSLMACNGHKIEDLS 5175 Query 715 VKQLQRKLYECCYRSTIVDDQFVVEYYGYLRKHFSMMILSDDGVVCYNNDYASLGYVADL 774 +++LQ++LY YR+ VD FV EYY +L KHFSM+ILSDDGVVCYN+++AS GY+A++ Sbjct 5176 IRELQKRLYSNVYRADHVDPAFVSEYYEFLNKHFSMIILSDDGVVCYNSEFASKGYIANI 5235 Query 775 NAFKAVLYYQNNVFMSASKCWIEPDINKGPHEFCSQHTMQIVDKEGTYYLPYPDPSRILS 834 + F+ VLYYQNNVFMS +KCW+E DI KGPHEFCSQHTM + YLPYPDPSRIL Sbjct 5236 SDFQQVLYYQNNVFMSEAKCWVETDIEKGPHEFCSQHTMLVKMDGDEVYLPYPDPSRILG 5295 Query 835 AGVFVDDVVKTDAVVLLERYVSLAIDAYPLSKHENPEYKKVFYVLLDWVKHLYKTLNAGV 894 AG FVDD++KTD+V+L+ER+VSLAIDAYPL HENPEY+ VF V L+++K LY L + Sbjct 5296 AGCFVDDLLKTDSVLLIERFVSLAIDAYPLVYHENPEYQNVFRVYLEYIKKLYNDLGNQI 5355 Query 895 LESFSVTLLEDSTAKFWDESFYANMYEKSAVLQ 927 L+S SV L KF DE+FY NMY +SAV+Q Sbjct 5356 LDSISVILSTCDGQKFTDETFYKNMYLRSAVMQ 5388 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=nsp16 [Human coronavirus HKU1 (isolate N2)] Sequence ID: P0C6X3.1 Length: 7152 Range 1: 4428 to 5355 Score:1127 bits(2914), Expect:0.0, Method:Compositional matrix adjust., Identities:544/934(58%), Positives:704/934(75%), Gaps:13/934(1%) Query 1 STDMAYLNRVRGSSA-ARLEPC-NGTDTQHVYRAFDIYNKDVACLGKFLKVNCVRLKNLD 58 S D+ +LNRVRG+S ARL PC +G T RAFDI N + A +G + KVNC R + +D Sbjct 4428 SKDLNFLNRVRGTSVNARLVPCASGLSTDVQLRAFDICNTNRAGIGLYYKVNCCRFQRID 4487 Query 59 ----KHDAFYVVKRCTKSAMEHEQSIYSRLEKCGAIAEHDFFTWKDGRAIYGNVCRKDLT 114 K D F+VVKR E++ Y + CG +AEHDFFT+ + ++ RK+L+ Sbjct 4488 DDGNKLDKFFVVKRTNLEVYNKEKTYYELTKSCGVVAEHDFFTFDIDGSRVPHIVRKNLS 4547 Query 115 EYTMMDLCYALRNFDENNCDVLKSILIKVGACEESYFNNKVWFDPVENEDIHRVYALLGT 174 +YTM+DLCYALR+FD N+C VL IL + C+ESYF+ K W+D VEN DI +Y LG Sbjct 4548 KYTMLDLCYALRHFDCNDCSVLCEILCEYADCKESYFSKKDWYDFVENPDIINIYKKLGP 4607 Query 175 IVARAMLKCVKFCDAMVEQGIVGVVTLDNQDLNGDFYDFGDFTCSIKGMGVPICTSYYSY 234 I RA+L V F D +V+ G+VGV+TLDNQDL G +YDFGDF + G GV + SYYSY Sbjct 4608 IFNRALLNTVSFADTLVKVGLVGVLTLDNQDLYGQWYDFGDFIQTAPGFGVAVADSYYSY 4667 Query 235 MMPVMGMTNCLASECFVKSDIFGEDFKSYDLLEYDFTEHKTALFNKYFKYWGLQYHPNCV 294 MMP++ M + L E FV + ++ +DL++YDFT++K LFNKYFKYWG++YHPN V Sbjct 4668 MMPMLTMCHVLDCELFVN-----DSYRQFDLVQYDFTDYKLELFNKYFKYWGMKYHPNTV 4722 Query 295 DCSDEQCIVHCANFNTLFSTTIPITAFGPLCRKCWIDGVPLVTTAGYHFKQLGIVWNNDL 354 DC +++CI+HCANFN LFS +P T FGPL R+ ++DGVP V + GYH+K+LG+V N D+ Sbjct 4723 DCDNDRCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMNLDV 4782 Query 355 NLHSSRLSINELLQFCSDPALLIASSPALVDQRTVCFSVAALGTGMTNQTVKPGHFNKEF 414 + H RLS+ +LL + +DPA+ +AS+ AL+D RT CFSVAA+ +G+ QTVKPG+FN++F Sbjct 4783 DTHRYRLSLKDLLLYAADPAMHVASASALLDLRTCCFSVAAITSGIKFQTVKPGNFNQDF 4842 Query 415 YDFLLEQGFFSEGSELTLKHFFFAQKVDAAVKDFDYYRYNRPTVLDICQARVVYQIVQRY 474 Y+F+ +G F EGS + LKHFFF Q +AA+ D++YY+YN PT++DI Q V ++V +Y Sbjct 4843 YEFVKSKGLFKEGSTVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKY 4902 Query 475 FDIYEGGCITAKEVVVTNLNKSAGYPLNKFGKAGLYYESLSYEEQDELYAYTKRNILPTM 534 F+IY+GGCI A +V+V N +KSAGYP NKFGKA LYYE+LS+EEQ+E+YAYTKRN+LPT+ Sbjct 4903 FEIYDGGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQNEIYAYTKRNVLPTL 4962 Query 535 TQLNLKYAISGKERARTVGGVSLLSTMTTRQYHQKHLKSIVNTRGASVVIGTTKFYGGWD 594 TQ+NLKYAIS K RARTV GVS+LSTMT R +HQK LKSI TRG VVIGTTKFYGGWD Sbjct 4963 TQMNLKYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWD 5022 Query 595 NMLKNLIDGVENPCLMGWDYPKCDRALPNMIRMISAMILGSKHTTCCSSTDRFFRLCNEL 654 +ML++LI V+NP LMGWDYPKCDRA+PN++R++S+++L KH CCS DRF+RL NE Sbjct 5023 DMLRHLIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEFCCSHGDRFYRLANEC 5082 Query 655 AQVLTEVVYSNGGFYLKPGGTTSGDATTAYANSVFNIFQAVSANVNKLLSVDSNVCHNLE 714 AQVL+E+V G +Y+KPGGT+SGDATTA+ANSVFNI QAV+ANV L++ + + +L Sbjct 5083 AQVLSEIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVTANVCSLMACNGHKIEDLS 5142 Query 715 VKQLQRKLYECCYRSTIVDDQFVVEYYGYLRKHFSMMILSDDGVVCYNNDYASLGYVADL 774 ++ LQ++LY YR+ VD FV EYY +L KHFSMMILSDDGVVCYN+DYAS GY+A++ Sbjct 5143 IRNLQKRLYSNVYRTDYVDYTFVNEYYEFLCKHFSMMILSDDGVVCYNSDYASKGYIANI 5202 Query 775 NAFKAVLYYQNNVFMSASKCWIEPDINKGPHEFCSQHTMQIVDKEGTY-YLPYPDPSRIL 833 + F+ VLYYQNNVFMS SKCW+E DI GPHEFCSQHTM +V +G Y YLPYPDPSRIL Sbjct 5203 SVFQQVLYYQNNVFMSESKCWVENDITNGPHEFCSQHTM-LVKIDGDYVYLPYPDPSRIL 5261 Query 834 SAGVFVDDVVKTDAVVLLERYVSLAIDAYPLSKHENPEYKKVFYVLLDWVKHLYKTLNAG 893 AG FVDD++KTD+V+L+ER+VSLAIDAYPL HEN EY+KVF V L+++K LY L Sbjct 5262 GAGCFVDDLLKTDSVLLIERFVSLAIDAYPLVHHENEEYQKVFRVYLEYIKKLYNDLGNQ 5321 Query 894 VLESFSVTLLEDSTAKFWDESFYANMYEKSAVLQ 927 +L+S+SV L KF DESFY NMY KSAV+Q Sbjct 5322 ILDSYSVILSTCDGLKFTDESFYKNMYLKSAVMQ 5355 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=nsp16 [Human coronavirus HKU1 (isolate N1)] Sequence ID: P0C6X2.1 Length: 7182 Range 1: 4458 to 5385 Score:1126 bits(2913), Expect:0.0, Method:Compositional matrix adjust., Identities:542/934(58%), Positives:704/934(75%), Gaps:13/934(1%) Query 1 STDMAYLNRVRGSSA-ARLEPC-NGTDTQHVYRAFDIYNKDVACLGKFLKVNCVRLKNLD 58 S D+ +LNRVRG+S ARL PC +G T RAFDI N + A +G + KVNC R + +D Sbjct 4458 SKDLNFLNRVRGTSVNARLVPCASGLSTDVQLRAFDICNTNRAGIGLYYKVNCCRFQRID 4517 Query 59 ----KHDAFYVVKRCTKSAMEHEQSIYSRLEKCGAIAEHDFFTWKDGRAIYGNVCRKDLT 114 K D F+VVKR E++ Y + CG +AEHDFFT+ + ++ R++L+ Sbjct 4518 DDGNKLDKFFVVKRTNLEVYNKEKTYYELTKSCGVVAEHDFFTFDIDGSRVPHIVRRNLS 4577 Query 115 EYTMMDLCYALRNFDENNCDVLKSILIKVGACEESYFNNKVWFDPVENEDIHRVYALLGT 174 +YTM+DLCYALR+FD N+C +L IL + C+ESYF+ K W+D VEN DI +Y LG Sbjct 4578 KYTMLDLCYALRHFDRNDCSILCEILCEYADCKESYFSKKDWYDFVENPDIINIYKKLGP 4637 Query 175 IVARAMLKCVKFCDAMVEQGIVGVVTLDNQDLNGDFYDFGDFTCSIKGMGVPICTSYYSY 234 I RA+L V F D +VE G+VGV+TLDNQDL G +YDFGDF + G GV + SYYSY Sbjct 4638 IFNRALLNTVIFADTLVEVGLVGVLTLDNQDLYGQWYDFGDFIQTAPGFGVAVADSYYSY 4697 Query 235 MMPVMGMTNCLASECFVKSDIFGEDFKSYDLLEYDFTEHKTALFNKYFKYWGLQYHPNCV 294 MMP++ M + L E FV + ++ +DL++YDFT++K LFNKYFKYWG++YHPN V Sbjct 4698 MMPMLTMCHVLDCELFVN-----DSYRQFDLVQYDFTDYKLELFNKYFKYWGMKYHPNTV 4752 Query 295 DCSDEQCIVHCANFNTLFSTTIPITAFGPLCRKCWIDGVPLVTTAGYHFKQLGIVWNNDL 354 DC +++CI+HCANFN LFS +P T FGPL R+ ++DGVP V + GYH+K+LG+V N D+ Sbjct 4753 DCDNDRCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMNLDV 4812 Query 355 NLHSSRLSINELLQFCSDPALLIASSPALVDQRTVCFSVAALGTGMTNQTVKPGHFNKEF 414 + H RLS+ +LL + +DPA+ +AS+ AL+D RT CFSVAA+ +G+ QTVKPG+FN++F Sbjct 4813 DTHRYRLSLKDLLLYAADPAMHVASASALLDLRTCCFSVAAITSGIKFQTVKPGNFNQDF 4872 Query 415 YDFLLEQGFFSEGSELTLKHFFFAQKVDAAVKDFDYYRYNRPTVLDICQARVVYQIVQRY 474 Y+F+ +G F EGS + LKHFFF Q +AA+ D++YY+YN PT++DI Q V ++V +Y Sbjct 4873 YEFVKSKGLFKEGSTVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKY 4932 Query 475 FDIYEGGCITAKEVVVTNLNKSAGYPLNKFGKAGLYYESLSYEEQDELYAYTKRNILPTM 534 F+IY+GGCI A +V+V N +KSAGYP NKFGKA LYYE+LS+EEQ+E+YAYTKRN+LPT+ Sbjct 4933 FEIYDGGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQNEIYAYTKRNVLPTL 4992 Query 535 TQLNLKYAISGKERARTVGGVSLLSTMTTRQYHQKHLKSIVNTRGASVVIGTTKFYGGWD 594 TQ+NLKYAIS K RARTV GVS+LSTMT R +HQK LKSI TRG VVIGTTKFYGGWD Sbjct 4993 TQMNLKYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWD 5052 Query 595 NMLKNLIDGVENPCLMGWDYPKCDRALPNMIRMISAMILGSKHTTCCSSTDRFFRLCNEL 654 +ML++LI V+NP LMGWDYPKCDRA+PN++R++S+++L KH CCS DRF+RL NE Sbjct 5053 DMLRHLIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEFCCSHGDRFYRLANEC 5112 Query 655 AQVLTEVVYSNGGFYLKPGGTTSGDATTAYANSVFNIFQAVSANVNKLLSVDSNVCHNLE 714 AQVL+E+V G +Y+KPGGT+SGDATTA+ANSVFNI QAV+ANV L++ + + +L Sbjct 5113 AQVLSEIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVTANVCSLMACNGHKIEDLS 5172 Query 715 VKQLQRKLYECCYRSTIVDDQFVVEYYGYLRKHFSMMILSDDGVVCYNNDYASLGYVADL 774 ++ LQ++LY YR+ VD FV EYY +L KHFSMMILSDDGVVCYN+DYAS GY+A++ Sbjct 5173 IRNLQKRLYSNVYRTDYVDYTFVNEYYEFLCKHFSMMILSDDGVVCYNSDYASKGYIANI 5232 Query 775 NAFKAVLYYQNNVFMSASKCWIEPDINKGPHEFCSQHTMQIVDKEGTY-YLPYPDPSRIL 833 + F+ VLYYQNNVFMS SKCW+E DI GPHEFCSQHTM +V +G Y YLPYPDPSRIL Sbjct 5233 SVFQQVLYYQNNVFMSESKCWVENDITNGPHEFCSQHTM-LVKIDGDYVYLPYPDPSRIL 5291 Query 834 SAGVFVDDVVKTDAVVLLERYVSLAIDAYPLSKHENPEYKKVFYVLLDWVKHLYKTLNAG 893 AG FVDD++KTD+V+L+ER+VSLAIDAYPL HEN EY+KVF V L+++K LY L Sbjct 5292 GAGCFVDDLLKTDSVLLIERFVSLAIDAYPLVHHENEEYQKVFRVYLEYIKKLYNDLGTQ 5351 Query 894 VLESFSVTLLEDSTAKFWDESFYANMYEKSAVLQ 927 +L+S+SV L KF +ESFY NMY KSAV+Q Sbjct 5352 ILDSYSVILSTCDGLKFTEESFYKNMYLKSAVMQ 5385 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=nsp16 [Human coronavirus HKU1 (isolate N5)] Sequence ID: P0C6X4.1 Length: 7132 Range 1: 4408 to 5335 Score:1126 bits(2912), Expect:0.0, Method:Compositional matrix adjust., Identities:542/934(58%), Positives:705/934(75%), Gaps:13/934(1%) Query 1 STDMAYLNRVRGSSA-ARLEPC-NGTDTQHVYRAFDIYNKDVACLGKFLKVNCVRLKNLD 58 S D+ +LNRVRG+S ARL PC +G T RAFDI N + A +G + KVNC R + +D Sbjct 4408 SKDLNFLNRVRGTSVNARLVPCASGLSTDVQLRAFDICNTNRAGIGLYYKVNCCRFQRID 4467 Query 59 ----KHDAFYVVKRCTKSAMEHEQSIYSRLEKCGAIAEHDFFTWKDGRAIYGNVCRKDLT 114 K D F+VVKR E++ Y + CG +AEHDFFT+ + ++ R++L+ Sbjct 4468 DDGNKLDKFFVVKRTNLEVYNKEKTYYELTKSCGVVAEHDFFTFDIDGSRVPHIVRRNLS 4527 Query 115 EYTMMDLCYALRNFDENNCDVLKSILIKVGACEESYFNNKVWFDPVENEDIHRVYALLGT 174 +YTM+DLCYALR+FD N+C +L IL + C+ESYF+ K W+D VEN DI +Y LG Sbjct 4528 KYTMLDLCYALRHFDRNDCSILCEILCEYADCKESYFSKKDWYDFVENPDIINIYKKLGP 4587 Query 175 IVARAMLKCVKFCDAMVEQGIVGVVTLDNQDLNGDFYDFGDFTCSIKGMGVPICTSYYSY 234 I RA+L V F D +VE G+VGV+TLDNQDL G +YDFGDF + G GV + SYYSY Sbjct 4588 IFNRALLNTVIFADTLVEVGLVGVLTLDNQDLYGQWYDFGDFIQTAPGFGVAVADSYYSY 4647 Query 235 MMPVMGMTNCLASECFVKSDIFGEDFKSYDLLEYDFTEHKTALFNKYFKYWGLQYHPNCV 294 MMP++ M + L E FV + ++ +DL++YDFT++K LFNKYFKYWG++YHPN V Sbjct 4648 MMPMLTMCHVLDCELFVN-----DSYRQFDLVQYDFTDYKLELFNKYFKYWGMKYHPNTV 4702 Query 295 DCSDEQCIVHCANFNTLFSTTIPITAFGPLCRKCWIDGVPLVTTAGYHFKQLGIVWNNDL 354 DC +++CI+HCANFN LFS +P T FGPL R+ ++DGVP V + GYH+K+LG+V N D+ Sbjct 4703 DCDNDRCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMNLDV 4762 Query 355 NLHSSRLSINELLQFCSDPALLIASSPALVDQRTVCFSVAALGTGMTNQTVKPGHFNKEF 414 + H RLS+ +LL + +DPA+ +AS+ AL+D RT CFSVAA+ +G+ QTVKPG+FN++F Sbjct 4763 DTHRYRLSLKDLLLYAADPAMHVASASALLDLRTCCFSVAAITSGIKFQTVKPGNFNQDF 4822 Query 415 YDFLLEQGFFSEGSELTLKHFFFAQKVDAAVKDFDYYRYNRPTVLDICQARVVYQIVQRY 474 Y+F+ +G F EGS + LKHFFF Q +AA+ D++YY+YN PT++DI Q V ++V +Y Sbjct 4823 YEFVKSKGLFKEGSTVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYKY 4882 Query 475 FDIYEGGCITAKEVVVTNLNKSAGYPLNKFGKAGLYYESLSYEEQDELYAYTKRNILPTM 534 F+IY+GGCI A +V+V N +KSAGYP NKFGKA LYYE+LS+EEQ+E+YAYTKRN+LPT+ Sbjct 4883 FEIYDGGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQNEIYAYTKRNVLPTL 4942 Query 535 TQLNLKYAISGKERARTVGGVSLLSTMTTRQYHQKHLKSIVNTRGASVVIGTTKFYGGWD 594 TQ+NLKYAIS K RARTV GVS+LSTMT R +HQK LKSI TRG VVIGTTKFYGGWD Sbjct 4943 TQMNLKYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWD 5002 Query 595 NMLKNLIDGVENPCLMGWDYPKCDRALPNMIRMISAMILGSKHTTCCSSTDRFFRLCNEL 654 +ML++LI V+NP LMGWDYPKCDRA+PN++R++S+++L KH CCS DRF+RL NE Sbjct 5003 DMLRHLIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEFCCSHGDRFYRLANEC 5062 Query 655 AQVLTEVVYSNGGFYLKPGGTTSGDATTAYANSVFNIFQAVSANVNKLLSVDSNVCHNLE 714 AQVL+E+V G +Y+KPGGT+SGDATTA+ANSVFNI QAV+ANV L++ + + +L Sbjct 5063 AQVLSEIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVTANVCSLMACNGHKIEDLS 5122 Query 715 VKQLQRKLYECCYRSTIVDDQFVVEYYGYLRKHFSMMILSDDGVVCYNNDYASLGYVADL 774 ++ LQ++LY YR+ VD FV EYY +L KHFSMMILSDDGVVCYN+DYA+ GY+A++ Sbjct 5123 IRNLQKRLYSNVYRTDYVDYTFVNEYYEFLCKHFSMMILSDDGVVCYNSDYANKGYIANI 5182 Query 775 NAFKAVLYYQNNVFMSASKCWIEPDINKGPHEFCSQHTMQIVDKEGTY-YLPYPDPSRIL 833 +AF+ VLYYQNNVFMS SKCW+E DI GPHEFCSQHTM +V +G Y YLPYPDPSRIL Sbjct 5183 SAFQQVLYYQNNVFMSESKCWVENDITNGPHEFCSQHTM-LVKIDGDYVYLPYPDPSRIL 5241 Query 834 SAGVFVDDVVKTDAVVLLERYVSLAIDAYPLSKHENPEYKKVFYVLLDWVKHLYKTLNAG 893 AG FVDD++KTD+V+L+ER+VSLAIDAYPL HEN EY+KVF V L+++K LY L Sbjct 5242 GAGCFVDDLLKTDSVLLIERFVSLAIDAYPLVYHENEEYQKVFRVYLEYIKKLYNDLGTQ 5301 Query 894 VLESFSVTLLEDSTAKFWDESFYANMYEKSAVLQ 927 +L+S+SV L KF +ESFY NMY KSAV+Q Sbjct 5302 ILDSYSVILSTCDGLKFTEESFYKNMYLKSAVMQ 5335 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Papain-like protease; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p41; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=Main protease; Short=Mpro; AltName: Full=Non-structural protein 5; Short=nsp5; AltName: Full=p33; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p24; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p16; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p68; Contains: RecName: Full=Proofreading exoribonuclease; Short=ExoN; AltName: Full=Guanine-N7 methyltransferase; AltName: Full=Non-structural protein 14; Short=nsp14; AltName: Full=p58; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=Non-structural protein 15; Short=nsp15; AltName: Full=p39; Contains: RecName: Full=2'-O-methyl transferase; AltName: Full=Non-structural protein 16; Short=nsp16; AltName: Full=p35 [Avian infectious bronchitis virus (strain Beaudette)] Sequence ID: P0C6Y1.1 Length: 6629 Range 1: 3937 to 4868 Score:1125 bits(2910), Expect:0.0, Method:Compositional matrix adjust., Identities:553/940(59%), Positives:696/940(74%), Gaps:23/940(2%) Query 3 DMAYLNRVRGSSAARLEP-CNGTDTQHVYRAFDIYNKDVACLGKFLKVNCVRLK------ 55 D YLNRVRGSS ARL P +G D V RAFD+ NK+ A + + LK NC R + Sbjct 3937 DKNYLNRVRGSSEARLIPLASGCDPDVVKRAFDVCNKESAGMFQNLKRNCARFQELRDTE 3996 Query 56 --NLDKHDAFYVVKRCTKSAMEHEQSIYSRLEKCGAIAEHDFFTWKDGRAIYGNVCRKDL 113 NL+ D+++VVK+ T S EHE+S Y L K A+HDFF + + IY N+ R+ L Sbjct 3997 DGNLEYLDSYFVVKQTTPSNYEHEKSCYEDL-KSEVTADHDFFVFN--KNIY-NISRQRL 4052 Query 114 TEYTMMDLCYALRNFDENNCDVLKSILIKVGACEESYF-----NNKVWFDPVENEDIHRV 168 T+YTMMD CYALR+FD +C+VLK IL+ G C E Y NK W+DP+EN + + Sbjct 4053 TKYTMMDFCYALRHFDPKDCEVLKEILVTYG-CIEDYHPKWFEENKDWYDPIENSKYYVM 4111 Query 169 YALLGTIVARAMLKCVKFCDAMVEQGIVGVVTLDNQDLNGDFYDFGDFTCSIKGMGVPIC 228 A +G IV RA+L ++F + MVE+G VGV+TLDNQDLNG FYDFGDF + G GVP+ Sbjct 4112 LAKMGPIVRRALLNAIEFGNLMVEKGYVGVITLDNQDLNGKFYDFGDFQKTAPGAGVPVF 4171 Query 229 TSYYSYMMPVMGMTNCLASECFVKSDIFGEDFKSYDLLEYDFTEHKTALFNKYFKYWGLQ 288 +YYSYMMP++ MT+ LA E + + D+ + +KSYDLL+YD+TE K LF KYFKYW + Sbjct 4172 DTYYSYMMPIIAMTDALAPERYFEYDVH-KGYKSYDLLKYDYTEEKQELFQKYFKYWDQE 4230 Query 289 YHPNCVDCSDEQCIVHCANFNTLFSTTIPITAFGPLCRKCWIDGVPLVTTAGYHFKQLGI 348 YHPNC DCSD++C++HCANFN LFST IP T+FG LCRK ++DGVP + T GYH K+LG+ Sbjct 4231 YHPNCRDCSDDRCLIHCANFNILFSTLIPQTSFGNLCRKVFVDGVPFIATCGYHSKELGV 4290 Query 349 VWNNDLNLHSSRLSINELLQFCSDPALLIASSPALVDQRTVCFSVAALGTGMTNQTVKPG 408 + N D + S++ +++L+QF DPALL+ +S LVD RT CFSV AL +G+T+QTVKPG Sbjct 4291 IMNQDNTMSFSKMGLSQLMQFVGDPALLVGTSNNLVDLRTSCFSVCALTSGITHQTVKPG 4350 Query 409 HFNKEFYDFLLEQGFFSEGSELTLKHFFFAQKVDAAVKDFDYYRYNRPTVLDICQARVVY 468 HFNK+FYDF + G F EGS + LKHFF+ Q +AA+ D+DYYRYNRPT+ DICQ Sbjct 4351 HFNKDFYDFAEKAGMFKEGSSIPLKHFFYPQTGNAAINDYDYYRYNRPTMFDICQLLFCL 4410 Query 469 QIVQRYFDIYEGGCITAKEVVVTNLNKSAGYPLNKFGKAGLYYESLSYEEQDELYAYTKR 528 ++ +YF+ YEGGCI A +VVV NL+KSAGYP NKFGKA LYYE +S EEQD+L+ TK+ Sbjct 4411 EVTSKYFECYEGGCIPASQVVVNNLDKSAGYPFNKFGKARLYYE-MSLEEQDQLFEITKK 4469 Query 529 NILPTMTQLNLKYAISGKERARTVGGVSLLSTMTTRQYHQKHLKSIVNTRGASVVIGTTK 588 N+LPT+TQ+NLKYAIS K RARTV GVS+LSTMT RQ+HQK LKSIVNTR ASVVIGTTK Sbjct 4470 NVLPTITQMNLKYAISAKNRARTVAGVSILSTMTNRQFHQKILKSIVNTRNASVVIGTTK 4529 Query 589 FYGGWDNMLKNLIDGVENPCLMGWDYPKCDRALPNMIRMISAMILGSKHTTCCSSTDRFF 648 FYGGWDNML+NLI GVE+P LMGWDYPKCDRA+PN++R+ ++++L KHT CCS ++R + Sbjct 4530 FYGGWDNMLRNLIQGVEDPILMGWDYPKCDRAMPNLLRIAASLVLARKHTNCCSWSERIY 4589 Query 649 RLCNELAQVLTEVVYSNGGFYLKPGGTTSGDATTAYANSVFNIFQAVSANVNKLLSVDSN 708 RL NE AQVL+E V + GG Y+KPGGT+SGDATTAYANSVFNI QA SANV +LLSV + Sbjct 4590 RLYNECAQVLSETVLATGGIYVKPGGTSSGDATTAYANSVFNIIQATSANVARLLSVITR 4649 Query 709 VCHNLEVKQLQRKLYECCYRSTIVDDQFVVEYYGYLRKHFSMMILSDDGVVCYNNDYASL 768 +K LQ +LY+ YR D FV ++Y YL K+FS+MILSDDGVVCYNN A Sbjct 4650 DIVYDNIKSLQYELYQQVYRRVNFDPAFVEKFYSYLCKNFSLMILSDDGVVCYNNTLAKQ 4709 Query 769 GYVADLNAFKAVLYYQNNVFMSASKCWIEPDINKGPHEFCSQHTMQI-VDKEGTYYLPYP 827 G VAD++ F+ VLYYQNNVFM+ SKCW+EPD+ KGPHEFCSQHTM + VD E YLPYP Sbjct 4710 GLVADISGFREVLYYQNNVFMADSKCWVEPDLEKGPHEFCSQHTMLVEVDGEPK-YLPYP 4768 Query 828 DPSRILSAGVFVDDVVKTDAVVLLERYVSLAIDAYPLSKHENPEYKKVFYVLLDWVKHLY 887 DPSRIL A VFVDDV KT+ V ++ERY++LAIDAYPL HEN EYKKVF+VLL +++ LY Sbjct 4769 DPSRILGACVFVDDVDKTEPVAVMERYIALAIDAYPLVHHENEEYKKVFFVLLAYIRKLY 4828 Query 888 KTLNAGVLESFSVTLLEDSTAKFWDESFYANMYEKSAVLQ 927 + L+ +L +S + D +KFW++ FY NMY LQ Sbjct 4829 QELSQNMLMDYSFVMDIDKGSKFWEQEFYENMYRAPTTLQ 4868 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Papain-like protease; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p41; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=Main protease; Short=Mpro; AltName: Full=Non-structural protein 5; Short=nsp5; AltName: Full=p33; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p24; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p16; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p68; Contains: RecName: Full=Proofreading exoribonuclease; Short=ExoN; AltName: Full=Guanine-N7 methyltransferase; AltName: Full=Non-structural protein 14; Short=nsp14; AltName: Full=p58; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=Non-structural protein 15; Short=nsp15; AltName: Full=p39; Contains: RecName: Full=2'-O-methyl transferase; AltName: Full=Non-structural protein 16; Short=nsp16; AltName: Full=p35 [Avian infectious bronchitis virus (strain Beaudette CK)] Sequence ID: P0C6Y2.1 Length: 6629 Range 1: 3937 to 4868 Score:1125 bits(2910), Expect:0.0, Method:Compositional matrix adjust., Identities:553/940(59%), Positives:696/940(74%), Gaps:23/940(2%) Query 3 DMAYLNRVRGSSAARLEP-CNGTDTQHVYRAFDIYNKDVACLGKFLKVNCVRLK------ 55 D YLNRVRGSS ARL P +G D V RAFD+ NK+ A + + LK NC R + Sbjct 3937 DKNYLNRVRGSSEARLIPLASGCDPDVVKRAFDVCNKESAGMFQNLKRNCARFQELRDTE 3996 Query 56 --NLDKHDAFYVVKRCTKSAMEHEQSIYSRLEKCGAIAEHDFFTWKDGRAIYGNVCRKDL 113 NL+ D+++VVK+ T S EHE+S Y L K A+HDFF + + IY N+ R+ L Sbjct 3997 DGNLEYLDSYFVVKQTTPSNYEHEKSCYEDL-KSEVTADHDFFVFN--KNIY-NISRQRL 4052 Query 114 TEYTMMDLCYALRNFDENNCDVLKSILIKVGACEESYF-----NNKVWFDPVENEDIHRV 168 T+YTMMD CYALR+FD +C+VLK IL+ G C E Y NK W+DP+EN + + Sbjct 4053 TKYTMMDFCYALRHFDPKDCEVLKEILVTYG-CIEDYHPKWFEENKDWYDPIENSKYYVM 4111 Query 169 YALLGTIVARAMLKCVKFCDAMVEQGIVGVVTLDNQDLNGDFYDFGDFTCSIKGMGVPIC 228 A +G IV RA+L ++F + MVE+G VGV+TLDNQDLNG FYDFGDF + G GVP+ Sbjct 4112 LAKMGPIVRRALLNAIEFGNLMVEKGYVGVITLDNQDLNGKFYDFGDFQKTAPGAGVPVF 4171 Query 229 TSYYSYMMPVMGMTNCLASECFVKSDIFGEDFKSYDLLEYDFTEHKTALFNKYFKYWGLQ 288 +YYSYMMP++ MT+ LA E + + D+ + +KSYDLL+YD+TE K LF KYFKYW + Sbjct 4172 DTYYSYMMPIIAMTDALAPERYFEYDVH-KGYKSYDLLKYDYTEEKQELFQKYFKYWDQE 4230 Query 289 YHPNCVDCSDEQCIVHCANFNTLFSTTIPITAFGPLCRKCWIDGVPLVTTAGYHFKQLGI 348 YHPNC DCSD++C++HCANFN LFST IP T+FG LCRK ++DGVP + T GYH K+LG+ Sbjct 4231 YHPNCRDCSDDRCLIHCANFNILFSTLIPQTSFGNLCRKVFVDGVPFIATCGYHSKELGV 4290 Query 349 VWNNDLNLHSSRLSINELLQFCSDPALLIASSPALVDQRTVCFSVAALGTGMTNQTVKPG 408 + N D + S++ +++L+QF DPALL+ +S LVD RT CFSV AL +G+T+QTVKPG Sbjct 4291 IMNQDNTMSFSKMGLSQLMQFVGDPALLVGTSNNLVDLRTSCFSVCALTSGITHQTVKPG 4350 Query 409 HFNKEFYDFLLEQGFFSEGSELTLKHFFFAQKVDAAVKDFDYYRYNRPTVLDICQARVVY 468 HFNK+FYDF + G F EGS + LKHFF+ Q +AA+ D+DYYRYNRPT+ DICQ Sbjct 4351 HFNKDFYDFAEKAGMFKEGSSIPLKHFFYPQTGNAAINDYDYYRYNRPTMFDICQLLFCL 4410 Query 469 QIVQRYFDIYEGGCITAKEVVVTNLNKSAGYPLNKFGKAGLYYESLSYEEQDELYAYTKR 528 ++ +YF+ YEGGCI A +VVV NL+KSAGYP NKFGKA LYYE +S EEQD+L+ TK+ Sbjct 4411 EVTSKYFECYEGGCIPASQVVVNNLDKSAGYPFNKFGKARLYYE-MSLEEQDQLFEITKK 4469 Query 529 NILPTMTQLNLKYAISGKERARTVGGVSLLSTMTTRQYHQKHLKSIVNTRGASVVIGTTK 588 N+LPT+TQ+NLKYAIS K RARTV GVS+LSTMT RQ+HQK LKSIVNTR ASVVIGTTK Sbjct 4470 NVLPTITQMNLKYAISAKNRARTVAGVSILSTMTNRQFHQKILKSIVNTRNASVVIGTTK 4529 Query 589 FYGGWDNMLKNLIDGVENPCLMGWDYPKCDRALPNMIRMISAMILGSKHTTCCSSTDRFF 648 FYGGWDNML+NLI GVE+P LMGWDYPKCDRA+PN++R+ ++++L KHT CCS ++R + Sbjct 4530 FYGGWDNMLRNLIQGVEDPILMGWDYPKCDRAMPNLLRIAASLVLARKHTNCCSWSERIY 4589 Query 649 RLCNELAQVLTEVVYSNGGFYLKPGGTTSGDATTAYANSVFNIFQAVSANVNKLLSVDSN 708 RL NE AQVL+E V + GG Y+KPGGT+SGDATTAYANSVFNI QA SANV +LLSV + Sbjct 4590 RLYNECAQVLSETVLATGGIYVKPGGTSSGDATTAYANSVFNIIQATSANVARLLSVITR 4649 Query 709 VCHNLEVKQLQRKLYECCYRSTIVDDQFVVEYYGYLRKHFSMMILSDDGVVCYNNDYASL 768 +K LQ +LY+ YR D FV ++Y YL K+FS+MILSDDGVVCYNN A Sbjct 4650 DIVYDNIKSLQYELYQQVYRRVNFDPAFVEKFYSYLCKNFSLMILSDDGVVCYNNTLAKQ 4709 Query 769 GYVADLNAFKAVLYYQNNVFMSASKCWIEPDINKGPHEFCSQHTMQI-VDKEGTYYLPYP 827 G VAD++ F+ VLYYQNNVFM+ SKCW+EPD+ KGPHEFCSQHTM + VD E YLPYP Sbjct 4710 GLVADISGFREVLYYQNNVFMADSKCWVEPDLEKGPHEFCSQHTMLVEVDGEPK-YLPYP 4768 Query 828 DPSRILSAGVFVDDVVKTDAVVLLERYVSLAIDAYPLSKHENPEYKKVFYVLLDWVKHLY 887 DPSRIL A VFVDDV KT+ V ++ERY++LAIDAYPL HEN EYKKVF+VLL +++ LY Sbjct 4769 DPSRILGACVFVDDVDKTEPVAVMERYIALAIDAYPLVHHENEEYKKVFFVLLAYIRKLY 4828 Query 888 KTLNAGVLESFSVTLLEDSTAKFWDESFYANMYEKSAVLQ 927 + L+ +L +S + D +KFW++ FY NMY LQ Sbjct 4829 QELSQNMLMDYSFVMDIDKGSKFWEQEFYENMYRAPTTLQ 4868 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Papain-like protease; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p41; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=Main protease; Short=Mpro; AltName: Full=Non-structural protein 5; Short=nsp5; AltName: Full=p33; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p24; Contains: RecName: Full=Viral protein genome-linked nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p16; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p68; Contains: RecName: Full=Proofreading exoribonuclease; Short=ExoN; AltName: Full=Guanine-N7 methyltransferase; AltName: Full=Non-structural protein 14; Short=nsp14; AltName: Full=p58; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=Non-structural protein 15; Short=nsp15; AltName: Full=p39; Contains: RecName: Full=2'-O-methyl transferase; AltName: Full=Non-structural protein 16; Short=nsp16; AltName: Full=p35 [Avian infectious bronchitis virus (strain M41)] Sequence ID: P0C6Y3.1 Length: 6631 Range 1: 3939 to 4870 Score:1119 bits(2894), Expect:0.0, Method:Compositional matrix adjust., Identities:547/939(58%), Positives:697/939(74%), Gaps:21/939(2%) Query 3 DMAYLNRVRGSSAARLEP-CNGTDTQHVYRAFDIYNKDVACLGKFLKVNCVRLK------ 55 D YLNRVRGSS ARL P NG D V RAFD+ NK+ A + + LK NC R + Sbjct 3939 DKNYLNRVRGSSEARLIPLANGCDPDVVKRAFDVCNKESAGMFQNLKRNCARFQEVRDTE 3998 Query 56 --NLDKHDAFYVVKRCTKSAMEHEQSIYSRLEKCGAIAEHDFFTWKDGRAIYGNVCRKDL 113 NL+ D+++VVK+ T S EHE++ Y L K A+HDFF + + IY N+ R+ L Sbjct 3999 DGNLEYCDSYFVVKQTTPSNYEHEKACYEDL-KSEVTADHDFFVFN--KNIY-NISRQRL 4054 Query 114 TEYTMMDLCYALRNFDENNCDVLKSILIKVGACEE---SYFN-NKVWFDPVENEDIHRVY 169 T+YTMMD CYALR+FD +C+VLK IL+ G E+ +F NK W+DP+EN + + Sbjct 4055 TKYTMMDFCYALRHFDPKDCEVLKEILVTYGCIEDYHPKWFEENKDWYDPIENPKYYAML 4114 Query 170 ALLGTIVARAMLKCVKFCDAMVEQGIVGVVTLDNQDLNGDFYDFGDFTCSIKGMGVPICT 229 A +G IV RA+L ++F + MVE+G VGV+TLDNQDLNG FYDFGDF + G GVP+ Sbjct 4115 AKMGPIVRRALLNAIEFGNLMVEKGYVGVITLDNQDLNGKFYDFGDFQKTAPGAGVPVFD 4174 Query 230 SYYSYMMPVMGMTNCLASECFVKSDIFGEDFKSYDLLEYDFTEHKTALFNKYFKYWGLQY 289 +YYSYMMP++ MT+ LA E + + D+ + +KSYDLL+YD+TE K LF KYFKYW +Y Sbjct 4175 TYYSYMMPIIAMTDALAPERYFEYDVH-KGYKSYDLLKYDYTEEKQDLFQKYFKYWDQEY 4233 Query 290 HPNCVDCSDEQCIVHCANFNTLFSTTIPITAFGPLCRKCWIDGVPLVTTAGYHFKQLGIV 349 HPNC DCSD++C++HCANFN LFST +P T+FG LCRK ++DGVP + T GYH K+LG++ Sbjct 4234 HPNCRDCSDDRCLIHCANFNILFSTLVPQTSFGNLCRKVFVDGVPFIATCGYHSKELGVI 4293 Query 350 WNNDLNLHSSRLSINELLQFCSDPALLIASSPALVDQRTVCFSVAALGTGMTNQTVKPGH 409 N D + S++ +++L+QF DPALL+ +S LVD RT CFSV AL +G+T+QTVKPGH Sbjct 4294 MNQDNTMSFSKMGLSQLMQFVGDPALLVGTSNKLVDLRTSCFSVCALASGITHQTVKPGH 4353 Query 410 FNKEFYDFLLEQGFFSEGSELTLKHFFFAQKVDAAVKDFDYYRYNRPTVLDICQARVVYQ 469 FNK+FYDF + G F EGS + LKHFF+ Q +AA+ D+DYYRYNRPT+ DI Q + Sbjct 4354 FNKDFYDFAEKAGMFKEGSSIPLKHFFYPQTGNAAINDYDYYRYNRPTMFDIRQLLFCLE 4413 Query 470 IVQRYFDIYEGGCITAKEVVVTNLNKSAGYPLNKFGKAGLYYESLSYEEQDELYAYTKRN 529 + +YF+ YEGGCI A +VVV NL+KSAGYP NKFGKA LYYE +S EEQD+L+ TK+N Sbjct 4414 VTSKYFECYEGGCIPASQVVVNNLDKSAGYPFNKFGKARLYYE-MSLEEQDQLFESTKKN 4472 Query 530 ILPTMTQLNLKYAISGKERARTVGGVSLLSTMTTRQYHQKHLKSIVNTRGASVVIGTTKF 589 +LPT+TQ+NLKYAIS K RARTV GVS+LSTMT RQ+HQK LKSIVNTR A VVIGTTKF Sbjct 4473 VLPTITQMNLKYAISAKNRARTVAGVSILSTMTNRQFHQKILKSIVNTRNAPVVIGTTKF 4532 Query 590 YGGWDNMLKNLIDGVENPCLMGWDYPKCDRALPNMIRMISAMILGSKHTTCCSSTDRFFR 649 YGGWDNML+NLI GVE+P LMGWDYPKCDRA+PN++R+ ++++L KHT CC+ ++R +R Sbjct 4533 YGGWDNMLRNLIQGVEDPILMGWDYPKCDRAMPNLLRIAASLVLARKHTNCCTWSERVYR 4592 Query 650 LCNELAQVLTEVVYSNGGFYLKPGGTTSGDATTAYANSVFNIFQAVSANVNKLLSVDSNV 709 L NE AQVL+E V + GG Y+KPGGT+SGDATTAYANSVFNI QA SANV +LLSV + Sbjct 4593 LYNECAQVLSETVLATGGIYVKPGGTSSGDATTAYANSVFNIIQATSANVARLLSVITRD 4652 Query 710 CHNLEVKQLQRKLYECCYRSTIVDDQFVVEYYGYLRKHFSMMILSDDGVVCYNNDYASLG 769 ++K LQ +LY+ YR D FV ++Y YL K+FS+MILSDDGVVCYNN A G Sbjct 4653 IVYDDIKSLQYELYQQVYRRVNFDPAFVEKFYSYLCKNFSLMILSDDGVVCYNNTLAKQG 4712 Query 770 YVADLNAFKAVLYYQNNVFMSASKCWIEPDINKGPHEFCSQHTMQI-VDKEGTYYLPYPD 828 VAD++ F+ VLYYQNNVFM+ SKCW+EPD+ KGPHEFCSQHTM + VD E YLPYPD Sbjct 4713 LVADISGFREVLYYQNNVFMADSKCWVEPDLEKGPHEFCSQHTMLVEVDGE-PRYLPYPD 4771 Query 829 PSRILSAGVFVDDVVKTDAVVLLERYVSLAIDAYPLSKHENPEYKKVFYVLLDWVKHLYK 888 PSRIL A VFVDD+ KT++V ++ERY++LAIDAYPL HEN EYKKVF+VLL +++ LY+ Sbjct 4772 PSRILCACVFVDDLDKTESVAVMERYIALAIDAYPLVHHENEEYKKVFFVLLSYIRKLYQ 4831 Query 889 TLNAGVLESFSVTLLEDSTAKFWDESFYANMYEKSAVLQ 927 L+ +L +S + D +KFW++ FY NMY LQ Sbjct 4832 ELSQNMLMDYSFVMDIDKGSKFWEQEFYENMYRAPTTLQ 4870 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12 [Rat coronavirus (strain 681)] Sequence ID: Q9WQ77.1 Length: 307 Range 1: 1 to 307 Score:453 bits(1166), Expect:3e-152, Method:Compositional matrix adjust., Identities:207/307(67%), Positives:257/307(83%), Gaps:0/307(0%) Query 501 LNKFGKAGLYYESLSYEEQDELYAYTKRNILPTMTQLNLKYAISGKERARTVGGVSLLST 560 NKFGKA LYYE+LS+EEQDE+YAYTKRN+LPT+TQ+NLKYAIS K RARTV GVS+LST Sbjct 1 FNKFGKARLYYEALSFEEQDEIYAYTKRNVLPTLTQMNLKYAISAKNRARTVAGVSILST 60 Query 561 MTTRQYHQKHLKSIVNTRGASVVIGTTKFYGGWDNMLKNLIDGVENPCLMGWDYPKCDRA 620 MT R +HQK LKSI TRG VVIGTTKFYGGWD+ML+ LI V++P LMGWDYPKCDRA Sbjct 61 MTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLRRLIKDVDSPVLMGWDYPKCDRA 120 Query 621 LPNMIRMISAMILGSKHTTCCSSTDRFFRLCNELAQVLTEVVYSNGGFYLKPGGTTSGDA 680 +PN++R++S+++L KH +CCS TDRF+RL NE AQVL+E+V G +Y+KPGGT+SGDA Sbjct 121 MPNILRIVSSLVLARKHDSCCSHTDRFYRLANECAQVLSEIVMCGGCYYVKPGGTSSGDA 180 Query 681 TTAYANSVFNIFQAVSANVNKLLSVDSNVCHNLEVKQLQRKLYECCYRSTIVDDQFVVEY 740 TTA+ANSVFNI QAVSANV L++ + + +L +++LQ++LY YR+ VD FV EY Sbjct 181 TTAFANSVFNICQAVSANVCSLMACNGHKIEDLSIRELQKRLYSNVYRADHVDPAFVSEY 240 Query 741 YGYLRKHFSMMILSDDGVVCYNNDYASLGYVADLNAFKAVLYYQNNVFMSASKCWIEPDI 800 Y +L KHFSMMILSDDGVVCYN+++AS GY+A+++AF+ VLYYQNNVFMS +KCW+E DI Sbjct 241 YEFLNKHFSMMILSDDGVVCYNSEFASKGYIANISAFQQVLYYQNNVFMSEAKCWVETDI 300 Query 801 NKGPHEF 807 KGPHEF Sbjct 301 EKGPHEF 307 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12 [Turkey coronavirus (strain Minnesota)] Sequence ID: Q9WQ76.1 Length: 306 Range 1: 1 to 306 Score:431 bits(1108), Expect:1e-143, Method:Compositional matrix adjust., Identities:201/307(65%), Positives:247/307(80%), Gaps:1/307(0%) Query 501 LNKFGKAGLYYESLSYEEQDELYAYTKRNILPTMTQLNLKYAISGKERARTVGGVSLLST 560 NKFGKA LYYE +S EEQD+L+ TK+N+LPT+TQ+NLKYAIS K RARTV GVS+LST Sbjct 1 FNKFGKARLYYE-MSLEEQDQLFESTKKNVLPTITQMNLKYAISAKNRARTVAGVSILST 59 Query 561 MTTRQYHQKHLKSIVNTRGASVVIGTTKFYGGWDNMLKNLIDGVENPCLMGWDYPKCDRA 620 MT RQ+HQK LKSIVNTR A VVIGTTKFYGGWDNML+NLI GVE+P LMGWDYPKCDRA Sbjct 60 MTNRQFHQKILKSIVNTRNAPVVIGTTKFYGGWDNMLRNLIQGVEDPILMGWDYPKCDRA 119 Query 621 LPNMIRMISAMILGSKHTTCCSSTDRFFRLCNELAQVLTEVVYSNGGFYLKPGGTTSGDA 680 +PN++R+ ++++L KHT CC+ ++R +RL NE AQVL+E V + GG Y+KPGGT+SGDA Sbjct 120 MPNLLRITASLVLARKHTNCCTWSERIYRLYNECAQVLSETVLATGGIYVKPGGTSSGDA 179 Query 681 TTAYANSVFNIFQAVSANVNKLLSVDSNVCHNLEVKQLQRKLYECCYRSTIVDDQFVVEY 740 TTAYANSVFNI QA SANV +LLSV + ++K LQ +LY+ YR D FV ++ Sbjct 180 TTAYANSVFNIIQATSANVARLLSVITRDIVYDDIKSLQYELYQQVYRRVNFDPAFVEKF 239 Query 741 YGYLRKHFSMMILSDDGVVCYNNDYASLGYVADLNAFKAVLYYQNNVFMSASKCWIEPDI 800 Y YL K+FS+MI +DDGVVCYNN A G VAD++ F+ +LYYQNNV+M+ SKCW+EPD+ Sbjct 240 YSYLCKNFSLMIFADDGVVCYNNTLAKQGLVADISGFREILYYQNNVYMADSKCWVEPDL 299 Query 801 NKGPHEF 807 KGPHEF Sbjct 300 EKGPHEF 306 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=N7-guanine methyltransferase; AltName: Full=Non-structural protein 1; Short=nsp1; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; Contains: RecName: Full=3C-like serine proteinase; Short=3CLSP; AltName: Full=M-PRO; AltName: Full=nsp3; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=Non-structural protein 5; Short=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp9; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp10; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp11; Contains: RecName: Full=Non-structural protein 12; Short=nsp12; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp13; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp14 [White bream virus (strain DF24/00)] Sequence ID: Q008X6.1 Length: 6872 Range 1: 4888 to 5380 Score:126 bits(316), Expect:6e-28, Method:Compositional matrix adjust., Identities:144/545(26%), Positives:234/545(42%), Gaps:79/545(14%) Query 410 FNKEFYDFLLEQGFFSEG---SELTLKHFFFAQKVDAAVKDFDYYRYNRPTVLDICQARV 466 + + FYD L Q S G SE T H+ +A V+DF YY YN P D + Sbjct 4888 YKRPFYDLDLIQRMNSAGLNLSETTGYHYQCGTTTEA-VEDFMYYNYNSPKSFDPSYLKS 4946 Query 467 VYQIVQRYFDIYEGGCITAKEVVVTNLNKSAGYPLNK---FGKAGLY----YESLSYEEQ 519 VY ++ F I+ E LN +G P G +G + + +L + Sbjct 4947 VYTYMRDKF----MKIISTDE----KLNHQSGAPRMSSMGVGVSGFFQKTVWNALPEDFS 4998 Query 520 DELYAYTKRNILPTMTQLNLKYAISGKERARTVGGVSLLSTMTTRQYHQKHLKSIVNTRG 579 L + ++P T + K+ K R RT+GG S +++ R H+ +V T Sbjct 4999 PRLLDTASKTVMPFSTNIVKKFQRQKKTRVRTLGGSSFITSSIFRMLHKPVTNKMVQTAQ 5058 Query 580 ASV---VIGTTKFYGGWDNMLK-NLIDGVENPCLMGWDYPKCDRALPNMIRMISAMI--- 632 A++ +IG +KF G+ L + +G+E+ +MG DY KCDR+ P + R +SA + Sbjct 5059 ANIGPFLIGISKFNLGFHKYLSAHHPNGIEDCQVMGADYTKCDRSFPVVCRALSAALFYE 5118 Query 633 LGSKHTTCCSSTDRFFRLCNELAQVLTEVVYSNGGFYLKPGGTTSGDATTAYANSVFNIF 692 LG + +F NE+ L + + +G + KPGGTTSGD+TTA++NS +N F Sbjct 5119 LGH-----LEPNNHWF--LNEMFAFLLDPSFISGHIFNKPGGTTSGDSTTAFSNSFYNYF 5171 Query 693 QAVSANVNKLLSVDS--------NVCHNLEVKQLQRKLYECCYRSTIVDDQFVVEYYGYL 744 + L+ + N+ H + Y+ + ++ DD EY+ Sbjct 5172 VHLYIQYLTFLTTEMPPSYQPLCNLAHQ-AFSTGNTETYDLYF--SMADDLNSTEYF--- 5225 Query 745 RKHFSMMILSDDGVVCYNNDYASLGYVADLNAFKAVLYYQNNVFMSASKCWIEPDINKGP 804 HF LSDD + + A+ F L ++ +K W + Sbjct 5226 -LHF----LSDDSFIISKPTAFPIFTPAN---FSMKLQNVLGCYVDPAKSW---SADGEI 5274 Query 805 HEFCSQHTMQIVDKEGTYYLPYPDPSRILSAGVFVDDVVKTDAVV--LLERYVSLAIDAY 862 HEFCS H +I +K Y PDP+ +L+ + + D ++ L+ LA+ + Sbjct 5275 HEFCSSHICKINEK----YQYVPDPNNMLAGLICAPEPTPQDKLIWKLVATCAELAVFHF 5330 Query 863 PLSKHENPEYKKVFYVLLDWVKHLYKTLNAGVLESFSVTLLEDSTAKFWDESFYANMYEK 922 NP L + + HL ++L+A + SV LL K + FY ++ + Sbjct 5331 -----VNP-------TLFNNIFHLLQSLHAEFVSEHSVNLLP---PKLLEIDFYTDLIDS 5375 Query 923 SAVLQ 927 V Q Sbjct 5376 EDVEQ 5380 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Putative papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 1; Short=nsp1; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; Contains: RecName: Full=3C-like serine proteinase; Short=3CLSP; AltName: Full=M-PRO; AltName: Full=nsp3; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=Non-structural protein 5; Short=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp10; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp11; AltName: Full=p67; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp12; Contains: RecName: Full=Non-structural protein 13; Short=nsp13; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp14; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp15 [Berne virus] Sequence ID: P0C6V7.1 Length: 6857 Range 1: 4827 to 5363 Score:117 bits(292), Expect:4e-25, Method:Compositional matrix adjust., Identities:135/579(23%), Positives:244/579(42%), Gaps:66/579(11%) Query 334 PLVTTAGYHFKQLGIVWNNDLNLHSSRLSINELLQFCSDPALL---IASSPALVDQRTVC 390 P T F Q VW + N + N L +F P +L + + + T Sbjct 4827 PANLTTTPFFSQHNGVWTHFYNPIYGLVECN-LDEFAELPEVLQQLVTVQGPITNNMTPA 4885 Query 391 FSVAALGTGMTNQTVKPGHFNKE---FYDFLLEQGFFSEGSEL--TLKHFFFAQKVDAAV 445 SV G G+ V K+ FYD L Q G + K+F++ A+ Sbjct 4886 ISV---GEGVYAANVPSASATKQKIPFYDVGLCQELTDAGVDCGEAFKYFYYLSNPAGAL 4942 Query 446 KDFDYYRYNRPTVLDICQARVVYQIVQRYFDIYEGGCITAKEVVVTNLNKSAGYPLNKFG 505 D YY Y VY ++R + Y I + + + +N G Sbjct 4943 ADVCYYDYQGTGFYSPKLLAGVYDFMKRVTECYR---INERFTYEQAKPRKSSMGINITG 4999 Query 506 -KAGLYYESLSYEEQDELYAYTKRNILPTMTQLNLKYAISGKERARTVGGVSLLSTMTTR 564 + Y +L E L+ Y ++ LP T++ K+A+S K RARTV S +++ R Sbjct 5000 YQQDAVYRALGPENIARLFEYAQKAPLPFCTKIITKFALSAKARARTVSSCSFIASTIFR 5059 Query 565 QYHQ---KHLKSIVNTRGASVVIGTTKFYGGWDNMLKNLIDGVENPCLMGWDYPKCDRAL 621 H+ + + G +IG +K+ + LK+ +E + G DY KCDR Sbjct 5060 FAHKPVTSKMVEVAQNSGGFCLIGVSKYGLKFSKFLKDKYGAIEGFDVFGSDYTKCDRTF 5119 Query 622 PNMIRMISAMILGSKHTTCCSSTDRFFRLCNELAQVLTEVVYSNGGFYLKPGGTTSGDAT 681 P R ++A +L ++ + NE+ + + + +G KPGGT+SGDAT Sbjct 5120 PLSFRALTAALL----YELGEWDEKSWLYLNEVNSYMLDTMLCDGMLLNKPGGTSSGDAT 5175 Query 682 TAYANSVFN-------IFQAVSANV---NKLLSVDSNVCHNLEVKQLQRKLYECCYRSTI 731 TA++N+ +N F+ + +++ NK++ + ++ + Q+ +T+ Sbjct 5176 TAHSNTFYNYMVHYVVAFKTILSDLSEGNKVMRIAAHNAYTTGDYQV---------FNTL 5226 Query 732 VDDQFVVEYYGYLRKHFSMMILSDDGVVCYNNDYASLGYVADL-NAFKAVLYYQNNVFMS 790 ++DQF Y+ + LSDD + + + + N + +L+ + + Sbjct 5227 LEDQFQTNYF--------LNFLSDDSFIFSKPEALKIFTCENFSNKLQTILHTK----VD 5274 Query 791 ASKCWIEPDINKGP-HEFCSQHTMQIVDKEGTYYLPYPDPSRILSAGVFVDDVVKTDAVV 849 +K W KG EFCS H I+ +G Y+ P R+L++ + +D + +D + Sbjct 5275 QTKSW----STKGHIEEFCSAH---IIKTDGEYHF-LPSRGRLLASLLILDKL--SDVDI 5324 Query 850 LLERYVSLAIDAYPLSKHENPEYKKVFYVLLDWVKHLYK 888 R+V++ ++ S+++ + +F V LD V+ K Sbjct 5325 YYMRFVAILCESAVYSRYQPEFFNGLFQVFLDKVQQFRK 5363 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Putative papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 1; Short=nsp1; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; Contains: RecName: Full=3C-like serine proteinase; Short=3CLSP; AltName: Full=M-PRO; AltName: Full=nsp3; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=Non-structural protein 5; Short=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp10; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp11; AltName: Full=p67; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp12; Contains: RecName: Full=Non-structural protein 13; Short=nsp13; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp14; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp15 [Breda virus serotype 1] Sequence ID: P0C6V8.1 Length: 6733 Range 1: 4882 to 5239 Score:108 bits(269), Expect:2e-22, Method:Compositional matrix adjust., Identities:97/384(25%), Positives:176/384(45%), Gaps:32/384(8%) Query 511 YESLSYEEQDELYAYTKRNILPTMTQLNLKYAISGKERARTVGGVSLLSTMTTRQYHQKH 570 Y +L E +L+ Y ++ LP T++ K+A+S K RARTV S +++ R H+ Sbjct 4882 YRALGPENITKLFEYAQKAPLPFCTKIITKFALSAKARARTVSSCSFIASTIFRFAHKPV 4941 Query 571 LKSIVNTRGAS---VVIGTTKFYGGWDNMLKNLIDGVENPCLMGWDYPKCDRALPNMIRM 627 +V S +IG +K+ + LK+ +E + G DY KCDR P R Sbjct 4942 TSKMVEVAQNSQGFCLIGVSKYGLKFSKFLKDKYGAIEQFDVFGSDYTKCDRTFPLSFRA 5001 Query 628 ISAMILGSKHTTCCSSTDRFFRLCNELAQVLTEVVYSNGGFYLKPGGTTSGDATTAYANS 687 ++A +L + D + L NE+ + + + +G KPGGT+SGDATTA++N+ Sbjct 5002 LTAALL---YELGGWEEDSWLYL-NEVNSYMLDTMLCDGMLLNKPGGTSSGDATTAHSNT 5057 Query 688 VFNIFQAVSANVNKLLSVDSNVCHNLEVKQLQRKLYECCYR--STIVDDQFVVEYYGYLR 745 +N +LS D + C+ + Y +T++++QF Y+ Sbjct 5058 FYNYMVHYVVAFKTILS-DLSDCNKVMRIAAHNAYTTGDYGVFNTLLEEQFQTNYF---- 5112 Query 746 KHFSMMILSDDGVVCYNNDYASLGYVADL-NAFKAVLYYQNNVFMSASKCWIEPDINKGP 804 + LSDD + + + N + +L+ + ++ +K W Sbjct 5113 ----LNFLSDDSFIFSKPGALKIFTCENFSNKLQTILHTKVDL----TKSWA---TTGHI 5161 Query 805 HEFCSQHTMQIVDKEGTYYLPYPDPSRILSAGVFVDDVVKTDAVVLLERYVSLAIDAYPL 864 EFCS H I+ +G Y+ P R+L++ + +D + +D + R+V++ ++ Sbjct 5162 EEFCSAH---IIKTDGEYHF-LPSRGRLLASLLILDKL--SDVDIYYMRFVAILCESAVY 5215 Query 865 SKHENPEYKKVFYVLLDWVKHLYK 888 S+++ + +F V LD V+ K Sbjct 5216 SRYQPEFFNGLFQVFLDKVQQFRK 5239 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Putative non-structural protein 1; Short=nsp1; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Putative non-structural protein 3; Short=nsp3; Contains: RecName: Full=Putative non-structural protein 4; Short=nsp4; Contains: RecName: Full=Putative non-structural protein 5; Short=nsp5; Contains: RecName: Full=Putative non-structural protein 6; Short=nsp6; Contains: RecName: Full=Putative non-structural protein 7; Short=nsp7; Contains: RecName: Full=Putative non-structural protein 8; Short=nsp8; Contains: RecName: Full=Putative non-structural protein 9; Short=nsp9; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; Contains: RecName: Full=Helicase; Short=Hel; Contains: RecName: Full=Exoribonuclease/N7-guanine methyltransferase; Short=ExoN; Contains: RecName: Full=Putative 2'-O-methyl transferase [Alphamesonivirus 1 isolate Aedes harrisoni/Cote d'Ivoire/C79/2004] Sequence ID: F8RL29.1 Length: 5088 Range 1: 3069 to 3485 Score:100 bits(249), Expect:5e-20, Method:Compositional matrix adjust., Identities:112/432(26%), Positives:188/432(43%), Gaps:45/432(10%) Query 456 PTVLDICQARVVYQIVQRYFDIYEG--GC-ITAKEVVVTNLNKSAGYPLNKFGKAGLYYE 512 PTV + +++Q++ +G C + EV V N +KSAG P KFG + E Sbjct 3069 PTVF-LMAIELLHQLLTEEISASDGKPNCPMVPSEVPVRNKHKSAGTPYRKFGDSEFMRE 3127 Query 513 SLSYEEQDELYAYTKRNILPTMTQLNL-KYAISGKERARTVGGVSLLSTMTTRQYHQKHL 571 Y + Y KR+ L + K A S R RT+ +S+ + R ++ +L Sbjct 3128 L--YGNYRDAIVYHKRHSADQQLTLTINKVAPSKNHRDRTILAISINKSEPGRSLYRWNL 3185 Query 572 KSI--VNTRGASVVIGTTKFYGGWDNMLKNLI--------DGVENPCLMGWDYPKCDRAL 621 I ++ G ++IG T YGGWD + K L D E+ L G DYPK DR + Sbjct 3186 DKIKYTSSLGGPILIGFTAQYGGWDKLYKYLYKNSPADHPDIAEHAVLGGKDYPKWDRRI 3245 Query 622 PNMIRMISAMILGS-------KHTTCCSSTDRFFRLCNELAQVLTEVVYSNGGFYLKPGG 674 NM+++ + +L S + + E QVL + + Y KPGG Sbjct 3246 SNMLQLTTTTVLYSLIDPNTQSKLNNATPAQTWHEYMAETTQVLFDYLVFGNELYQKPGG 3305 Query 675 TTSGDATTAYANSVFNIFQAVSANVNKLLSVDSNVCHNLEVKQLQRKLYECCYR---STI 731 TSG++ TA NS+ ++ A +++L+ H LEV L+ L + + S Sbjct 3306 VTSGNSRTADGNSLLHLLIDFYAIISQLIQSTPENVH-LEV-NLRNALCKTVFTKIPSDY 3363 Query 732 VDDQFV----VEYYGYLRKHFSM-MILSDDGVVCYNNDYASLGYVADLNAFKAVLYYQNN 786 +D V + +R+ + LSDDG++ + + + F +V + ++ Sbjct 3364 IDSSCVTLRNTDILHTIRRRVAKGAYLSDDGLIVID------PRIIRYDDFMSVSHLISH 3417 Query 787 VFMSASKCWIEPD-INKGPHEFCSQHTMQIVDKEGTYYLPYPDPSRILSAGVFVDDVVKT 845 ++ +K D I + EF SQ T+ K G P P+ R+ +A + D+ Sbjct 3418 YMIAQNKHKYHIDAIQRYAREFLSQDTI----KFGDMVYPIPEFGRMYTAMLLSDNKNTL 3473 Query 846 DAVVLLERYVSL 857 D + + R ++L Sbjct 3474 DPQINITRLLAL 3485 >RecName: Full=Replicase polyprotein 1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Nsp1; Contains: RecName: Full=Nsp1-alpha papain-like cysteine proteinase; AltName: Full=PCP1-alpha; Contains: RecName: Full=Nsp1-beta papain-like cysteine proteinase; AltName: Full=PCP1-beta; Contains: RecName: Full=Nsp2 cysteine proteinase; AltName: Full=CP2; Short=CP; Contains: RecName: Full=Non-structural protein 3; Short=Nsp3; Contains: RecName: Full=Serine protease nsp4; Short=3CLSP; AltName: Full=3C-like serine proteinase; AltName: Full=Nsp4; Contains: RecName: Full=Non-structural protein 5-6-7; Short=Nsp5-6-7; Contains: RecName: Full=Non-structural protein 5; Short=Nsp5; Contains: RecName: Full=Non-structural protein 6; Short=Nsp6; Contains: RecName: Full=Non-structural protein 7-alpha; Short=Nsp7-alpha; Contains: RecName: Full=Non-structural protein 7-beta; Short=Nsp7-beta; Contains: RecName: Full=Non-structural protein 8; Short=Nsp8; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=Nsp9; Contains: RecName: Full=Helicase nsp10; Short=Hel; AltName: Full=Nsp10; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp11; AltName: Full=Non-structural protein 11; Short=Nsp11; Contains: RecName: Full=Non-structural protein 12; Short=Nsp12 [PRRSV 16244B] Sequence ID: Q9YN02.3 Length: 3961 Range 1: 2740 to 2967 Score:52.8 bits(125), Expect:1e-05, Method:Compositional matrix adjust., Identities:64/258(25%), Positives:105/258(40%), Gaps:38/258(14%) Query 442 DAAVKDFDYYRYNRPTVLDICQARV---VYQIVQRYFDIYEGGCITA-KEVVVTNLNKSA 497 DAA+KD Y + Q V V ++V++Y + G C + N A Sbjct 2740 DAALKDLSKYDLS-------TQGFVLPGVLRLVRKYLFAHVGKCPPVHRPSTYPAKNSMA 2792 Query 498 GYPLNKFGKAGLYYESLSYEEQDELYAYTKRNILPTMTQLNLKYAISGKERARTVGG--- 554 G N+F + S E D L A R T+T LK GK++ RT+ G Sbjct 2793 GINGNRFPTKDIQ----SVPEIDVLCAQAVRENWQTVTPCTLKKQYCGKKKTRTILGTNN 2848 Query 555 -VSLLSTMTTRQYHQKHLKSIVNTRGASVVIGTTKFYGGWDNMLKNLIDGVENPCLMGWD 613 ++L Q +K N+ + +G KF K L V CL D Sbjct 2849 FIALAHRAALSGVTQGFMKKAFNS---PIALGKNKF--------KELQTSVLGRCLEA-D 2896 Query 614 YPKCDRALPNMIRMISAMILGSKHTTCCSSTDRFFRLCNELAQVLTEVVYSNGGFYLKPG 673 CDR+ P ++R +A +L + C+ L + + +++ + G K G Sbjct 2897 LASCDRSTPAIVRWFAANLL---YELACAEE----HLPSYVLNCCHDLLVTQSGAVTKRG 2949 Query 674 GTTSGDATTAYANSVFNI 691 G +SGD T+ +N+++++ Sbjct 2950 GLSSGDPITSVSNTIYSL 2967 >RecName: Full=Replicase polyprotein 1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Nsp1; Contains: RecName: Full=Nsp1-alpha papain-like cysteine proteinase; AltName: Full=PCP1-alpha; Contains: RecName: Full=Nsp1-beta papain-like cysteine proteinase; AltName: Full=PCP1-beta; Contains: RecName: Full=Nsp2 cysteine proteinase; AltName: Full=CP2; Short=CP; Contains: RecName: Full=Non-structural protein 3; Short=Nsp3; Contains: RecName: Full=Serine protease nsp4; Short=3CLSP; AltName: Full=3C-like serine proteinase; AltName: Full=Nsp4; Contains: RecName: Full=Non-structural protein 5-6-7; Short=Nsp5-6-7; Contains: RecName: Full=Non-structural protein 5; Short=Nsp5; Contains: RecName: Full=Non-structural protein 6; Short=Nsp6; Contains: RecName: Full=Non-structural protein 7-alpha; Short=Nsp7-alpha; Contains: RecName: Full=Non-structural protein 7-beta; Short=Nsp7-beta; Contains: RecName: Full=Non-structural protein 8; Short=Nsp8; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=Nsp9; Contains: RecName: Full=Helicase nsp10; Short=Hel; AltName: Full=Nsp10; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp11; AltName: Full=Non-structural protein 11; Short=Nsp11; Contains: RecName: Full=Non-structural protein 12; Short=Nsp12 [PRRSV VR2332] Sequence ID: Q9WJB2.2 Length: 3960 Range 1: 2739 to 2966 Score:52.4 bits(124), Expect:2e-05, Method:Compositional matrix adjust., Identities:64/258(25%), Positives:105/258(40%), Gaps:38/258(14%) Query 442 DAAVKDFDYYRYNRPTVLDICQARV---VYQIVQRYFDIYEGGCITA-KEVVVTNLNKSA 497 DAA+KD Y + Q V V ++V++Y + G C + N A Sbjct 2739 DAALKDLSKYDLS-------TQGFVLPGVLRLVRKYLFAHVGKCPPVHRPSTYPAKNSMA 2791 Query 498 GYPLNKFGKAGLYYESLSYEEQDELYAYTKRNILPTMTQLNLKYAISGKERARTVGG--- 554 G N+F + S E D L A R T+T LK GK++ RT+ G Sbjct 2792 GINGNRFPTKDIQ----SVPEIDVLCAQAVRENWQTVTPCTLKKQYCGKKKTRTILGTNN 2847 Query 555 -VSLLSTMTTRQYHQKHLKSIVNTRGASVVIGTTKFYGGWDNMLKNLIDGVENPCLMGWD 613 ++L Q +K N+ + +G KF K L V CL D Sbjct 2848 FIALAHRAVLSGVTQGFMKKAFNS---PIALGKNKF--------KELQTPVLGRCLEA-D 2895 Query 614 YPKCDRALPNMIRMISAMILGSKHTTCCSSTDRFFRLCNELAQVLTEVVYSNGGFYLKPG 673 CDR+ P ++R +A +L + C+ L + + +++ + G K G Sbjct 2896 LASCDRSTPAIVRWFAANLL---YELACAEE----HLPSYVLNCCHDLLVTQSGAVTKRG 2948 Query 674 GTTSGDATTAYANSVFNI 691 G +SGD T+ +N+++++ Sbjct 2949 GLSSGDPITSVSNTIYSL 2966 >RecName: Full=Replicase polyprotein 1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Nsp1; Contains: RecName: Full=Nsp1-alpha papain-like cysteine proteinase; AltName: Full=PCP1-alpha; Contains: RecName: Full=Nsp1-beta papain-like cysteine proteinase; AltName: Full=PCP1-beta; Contains: RecName: Full=Nsp2 cysteine proteinase; AltName: Full=CP2; Short=CP; Contains: RecName: Full=Non-structural protein 3; Short=Nsp3; Contains: RecName: Full=Serine protease nsp4; Short=3CLSP; AltName: Full=3C-like serine proteinase; AltName: Full=Nsp4; Contains: RecName: Full=Non-structural protein 5-6-7; Short=Nsp5-6-7; Contains: RecName: Full=Non-structural protein 5; Short=Nsp5; Contains: RecName: Full=Non-structural protein 6; Short=Nsp6; Contains: RecName: Full=Non-structural protein 7-alpha; Short=Nsp7-alpha; Contains: RecName: Full=Non-structural protein 7-beta; Short=Nsp7-beta; Contains: RecName: Full=Non-structural protein 8; Short=Nsp8; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=Nsp9; Contains: RecName: Full=Helicase nsp10; Short=Hel; AltName: Full=Nsp10; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp11; AltName: Full=Non-structural protein 11; Short=Nsp11; Contains: RecName: Full=Non-structural protein 12; Short=Nsp12 [PRRSV HB-1(sh)/2002] Sequence ID: Q8B912.3 Length: 3961 Range 1: 2740 to 2967 Score:52.4 bits(124), Expect:2e-05, Method:Compositional matrix adjust., Identities:63/258(24%), Positives:105/258(40%), Gaps:38/258(14%) Query 442 DAAVKDFDYYRYNRPTVLDICQARV---VYQIVQRYFDIYEGGCITA-KEVVVTNLNKSA 497 DAA++D Y + Q V V ++V++Y + G C + N A Sbjct 2740 DAALRDLSKYDL-------VTQGFVLPGVLRLVRKYLFAHVGKCPPVHRPSTYPAKNSMA 2792 Query 498 GYPLNKFGKAGLYYESLSYEEQDELYAYTKRNILPTMTQLNLKYAISGKERARTVGG--- 554 G N+F + S E D L A R T+T LK GK++ RT+ G Sbjct 2793 GINGNRFPTKDIQ----SVPEIDVLCAQAVRENWQTVTPCTLKKQYCGKKKTRTILGTNN 2848 Query 555 -VSLLSTMTTRQYHQKHLKSIVNTRGASVVIGTTKFYGGWDNMLKNLIDGVENPCLMGWD 613 ++L Q +K N+ + +G KF K L V CL D Sbjct 2849 FIALAHRAALSGVTQGFMKKAFNS---PIALGKNKF--------KELQTPVLGRCLEA-D 2896 Query 614 YPKCDRALPNMIRMISAMILGSKHTTCCSSTDRFFRLCNELAQVLTEVVYSNGGFYLKPG 673 CDR+ P ++R +A +L + C+ L + + +++ + G K G Sbjct 2897 LASCDRSTPAIVRWFAANLL---YELACAEE----HLPSYVLNCCHDLLVTQSGAVTKRG 2949 Query 674 GTTSGDATTAYANSVFNI 691 G +SGD T+ +N+++++ Sbjct 2950 GLSSGDPITSVSNTIYSL 2967 >RecName: Full=Replicase polyprotein 1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Nsp1; Contains: RecName: Full=Nsp1-alpha papain-like cysteine proteinase; AltName: Full=PCP1-alpha; Contains: RecName: Full=Nsp1-beta papain-like cysteine proteinase; AltName: Full=PCP1-beta; Contains: RecName: Full=Nsp2 cysteine proteinase; AltName: Full=CP2; Short=CP; Contains: RecName: Full=Non-structural protein 3; Short=Nsp3; Contains: RecName: Full=Serine protease nsp4; Short=3CLSP; AltName: Full=3C-like serine proteinase; AltName: Full=Nsp4; Contains: RecName: Full=Non-structural protein 5-6-7; Short=Nsp5-6-7; Contains: RecName: Full=Non-structural protein 5; Short=Nsp5; Contains: RecName: Full=Non-structural protein 6; Short=Nsp6; Contains: RecName: Full=Non-structural protein 7-alpha; Short=Nsp7-alpha; Contains: RecName: Full=Non-structural protein 7-beta; Short=Nsp7-beta; Contains: RecName: Full=Non-structural protein 8; Short=Nsp8; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=Nsp9; Contains: RecName: Full=Helicase nsp10; Short=Hel; AltName: Full=Nsp10; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp11; AltName: Full=Non-structural protein 11; Short=Nsp11; Contains: RecName: Full=Non-structural protein 12; Short=Nsp12 [Porcine reproductive and respiratory syndrome virus] Sequence ID: A6YQT5.2 Length: 3931 Range 1: 2710 to 2937 Score:51.6 bits(122), Expect:4e-05, Method:Compositional matrix adjust., Identities:63/258(24%), Positives:105/258(40%), Gaps:38/258(14%) Query 442 DAAVKDFDYYRYNRPTVLDICQARV---VYQIVQRYFDIYEGGCITA-KEVVVTNLNKSA 497 DAA++D Y + Q V V ++V++Y + G C + N A Sbjct 2710 DAALRDLSKYDLS-------TQGFVLPGVLRLVRKYLFAHVGKCPPVHRPSTYPAKNSMA 2762 Query 498 GYPLNKFGKAGLYYESLSYEEQDELYAYTKRNILPTMTQLNLKYAISGKERARTVGG--- 554 G N+F + S E D L A R T+T LK GK++ RT+ G Sbjct 2763 GINGNRFPTKDIQ----SVPEIDVLCAQAVRENWQTVTPCTLKKQYCGKKKTRTILGTNN 2818 Query 555 -VSLLSTMTTRQYHQKHLKSIVNTRGASVVIGTTKFYGGWDNMLKNLIDGVENPCLMGWD 613 ++L Q +K N+ + +G KF K L V CL D Sbjct 2819 FIALAHRAALSGVTQGFMKKAFNS---PIALGKNKF--------KELQAPVLGRCLEA-D 2866 Query 614 YPKCDRALPNMIRMISAMILGSKHTTCCSSTDRFFRLCNELAQVLTEVVYSNGGFYLKPG 673 CDR+ P ++R +A +L + C+ L + + +++ + G K G Sbjct 2867 LASCDRSTPAIVRWFAANLL---YELACAEE----HLPSYVLNCCHDLLVTQSGAVTKRG 2919 Query 674 GTTSGDATTAYANSVFNI 691 G +SGD T+ +N+++++ Sbjct 2920 GLSSGDPITSVSNTIYSL 2937 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Nuclear inclusion protein A; Short=NI-A; Short=NIA; AltName: Full=49 kDa proteinase; Short=49 kDa-Pro; Contains: RecName: Full=Nuclear inclusion protein B; Short=NI-B; Short=NIB; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Capsid protein; Short=CP; AltName: Full=Coat protein [Watermelon mosaic virus 2 (isolate USA)] Sequence ID: P18478.3 Length: 1017 Range 1: 286 to 541 Score:47.8 bits(112), Expect:5e-04, Method:Compositional matrix adjust., Identities:62/275(23%), Positives:113/275(41%), Gaps:46/275(16%) Query 442 DAAVKDFDYYRYNRPTVLDICQ----ARVVYQIVQRYFDIYEGGC--ITAKEVVVTNLNK 495 DA KDF ++YN+P VL+ + V ++ D C +T + + +LN Sbjct 286 DAFKKDF--FKYNKPVVLNEVDFNAFEKAVEGVITMMVDFEFAECLFVTDPDEIYGSLNM 343 Query 496 SAGYPLNKFGKAGLYYESL-SYEEQDELYAYTKR--NILPTMTQLNLKYAISGKER---- 548 A GK Y+ + S++++ LY +R N + +LK + E+ Sbjct 344 KAAVGAQYKGKKQDYFSGMDSFDKERLLYLSCERLFNGEKGIWNGSLKAELRPIEKVQAN 403 Query 549 -ARTVGGVSLLSTMTTR--------QYHQKHLKSIVNTRGASVVIGTTKFYGGWDNMLKN 599 RT L + + + Q++ +LK +G TKFYGGWD ++++ Sbjct 404 KTRTFTAAPLDTLLGAKVCVDDFNNQFYSFNLK-------CPWTVGMTKFYGGWDKLMRS 456 Query 600 LIDGVENPCLMGWDYPKCDRALPNMIRMISAMILGSKHTTCCSSTDRFFRLCNELAQVLT 659 L D GW Y D + ++ ++L + + C + ++ L + Sbjct 457 LPD--------GWTYCHADGS--QFDSSLTPLLLNAVLSIRCCFMEDWWVGREMLENLYA 506 Query 660 EVVYS-----NGGFYLKPGGTTSGDATTAYANSVF 689 E+VY+ +G + K G SG +T N++ Sbjct 507 EIVYTPILAPDGTIFKKFRGNNSGQPSTVVDNTLM 541 >RecName: Full=Replicase polyprotein 1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Nsp1-alpha papain-like cysteine proteinase; AltName: Full=PCP1-alpha; Contains: RecName: Full=Nsp1-beta papain-like cysteine proteinase; AltName: Full=PCP1-beta; Contains: RecName: Full=Nsp2 cysteine proteinase; AltName: Full=CP2; Short=CP; Contains: RecName: Full=Non-structural protein 3; Short=Nsp3; Contains: RecName: Full=3C-like serine proteinase; Short=3CLSP; AltName: Full=Nsp4; Contains: RecName: Full=Non-structural protein 5-6-7; Short=Nsp5-6-7; Contains: RecName: Full=Non-structural protein 5; Short=Nsp5; Contains: RecName: Full=Non-structural protein 6; Short=Nsp6; Contains: RecName: Full=Non-structural protein 7-alpha; Short=Nsp7-alpha; Contains: RecName: Full=Non-structural protein 7-beta; Short=Nsp7-beta; Contains: RecName: Full=Non-structural protein 8; Short=Nsp8; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=Nsp9; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=Nsp10; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp11; AltName: Full=Non-structural protein 11; Short=Nsp11; Contains: RecName: Full=Non-structural protein 12; Short=Nsp12 [Simian hemorrhagic fever virus] Sequence ID: Q68772.4 Length: 3595 Range 1: 2412 to 2595 Score:43.9 bits(102), Expect:0.009, Method:Compositional matrix adjust., Identities:49/210(23%), Positives:84/210(40%), Gaps:33/210(15%) Query 520 DELYAYTKRNILPTMTQLNLKYAISGKERARTVGGVSLLSTMTTRQYHQKHLKSI-VNTR 578 DEL + T+T + LK K + RT+ G + ++++ R + + + Sbjct 2412 DELCEKAIAEVWQTVTPVTLKKQFCSKAKTRTILGTNAMASLALRALLSGVTQGFQLAGK 2471 Query 579 GASVVIGTTKFYGGWDNMLKNLIDGVENPCLMGWDYPKCDRALPNMIRMISAMILGSKHT 638 + + +G +KF V+ CL D CDR+ P ++R + +L Sbjct 2472 NSPICLGKSKF--------DPCTFEVKGRCLET-DLASCDRSTPAIVRHFATKLL----- 2517 Query 639 TCCSSTDRFFRLCNELAQVL------TEVVYSNGGFYLKPGGTTSGDATTAYANSVFNIF 692 F C E A L +++ + K GG +SGD T+ AN+++++ Sbjct 2518 --------FEMACAERALPLYVVNCCHDLIVTQTSAATKRGGLSSGDPVTSIANTIYSLV 2569 Query 693 QAVSANVNKLLSVDSNVCHNLEVKQLQRKL 722 V V LL H L +K L KL Sbjct 2570 LYVQHMVLTLLENG----HPLSLKFLSGKL 2595 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1 protease; AltName: Full=Leader protease P1; AltName: Full=N-terminal protein; AltName: Full=P1 proteinase; Contains: RecName: Full=Helper component proteinase; Short=HC-pro; Contains: RecName: Full=Protein P3; Contains: RecName: Full=6 kDa protein 1; Short=6K1; Contains: RecName: Full=Cytoplasmic inclusion protein; Short=CI; Contains: RecName: Full=6 kDa protein 2; Short=6K2; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Nuclear inclusion protein A; Short=NI-a; Short=NIa; AltName: Full=49 kDa proteinase; Short=49 kDa-Pro; AltName: Full=NIa-pro; Contains: RecName: Full=Nuclear inclusion protein B; Short=NI-b; Short=NIb; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Capsid protein; Short=CP; AltName: Full=Coat protein [Zucchini yellow mosaic virus (strain California)] Sequence ID: P18479.2 Length: 3080 Range 1: 2356 to 2525 Score:42.0 bits(97), Expect:0.034, Method:Compositional matrix adjust., Identities:45/177(25%), Positives:78/177(44%), Gaps:29/177(16%) Query 449 DYYRYNRP-TVLDICQARVVYQI--VQRY---FDIYEGGCITAKEVVVTNLNKSAGYPLN 502 D+++YN+P TV + + + + V R F+ E IT E + +LN A Sbjct 2356 DFFKYNKPVTVNQLDHDKFLGAVDGVIRMMCDFEFNECRFITDPEEIYNSLNMKAAIGAQ 2415 Query 503 KFGKAGLYYESLS-YEEQDELYAYTKR--NILPTMTQLNLKYAISGKERAR--------- 550 GK Y+E L ++ + L+ +R N + +LK + E+ R Sbjct 2416 YRGKKKEYFEGLDDFDRERLLFQSCERLFNGYKGLWNGSLKAELRPLEKVRANKTRTFTA 2475 Query 551 ----TVGGVSLLSTMTTRQYHQKHLKSIVNTRGASVVIGTTKFYGGWDNMLKNLIDG 603 T+ G + ++++K+LK +G TKFYGGWD ++++L DG Sbjct 2476 APIDTLLGAKVCVDDFNNEFYRKNLK-------CPWTVGMTKFYGGWDKLMRSLPDG 2525 >RecName: Full=Replicase polyprotein 1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Nsp1; Contains: RecName: Full=Nsp1-alpha papain-like cysteine proteinase; AltName: Full=PCP1-alpha; Contains: RecName: Full=Nsp1-beta papain-like cysteine proteinase; AltName: Full=PCP1-beta; Contains: RecName: Full=Nsp2 cysteine proteinase; AltName: Full=CP2; Short=CP; Contains: RecName: Full=Non-structural protein 3; Short=Nsp3; Contains: RecName: Full=Serine protease nsp4; Short=3CLSP; AltName: Full=3C-like serine proteinase; AltName: Full=Nsp4; Contains: RecName: Full=Non-structural protein 5-6-7; Short=Nsp5-6-7; Contains: RecName: Full=Non-structural protein 5; Short=Nsp5; Contains: RecName: Full=Non-structural protein 6; Short=Nsp6; Contains: RecName: Full=Non-structural protein 7-alpha; Short=Nsp7-alpha; Contains: RecName: Full=Non-structural protein 7-beta; Short=Nsp7-beta; Contains: RecName: Full=Non-structural protein 8; Short=Nsp8; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=Nsp9; Contains: RecName: Full=Helicase nsp10; Short=Hel; AltName: Full=Nsp10; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp11; AltName: Full=Non-structural protein 11; Short=Nsp11; Contains: RecName: Full=Non-structural protein 12; Short=Nsp12 [PRRSV SD 01-08] Sequence ID: A0MD28.2 Length: 3838 Range 1: 2682 to 2870 Score:41.6 bits(96), Expect:0.040, Method:Compositional matrix adjust., Identities:55/217(25%), Positives:88/217(40%), Gaps:37/217(17%) Query 515 SYEEQDELYAYTKRNILPTMTQLNLKYAISGKERARTVGGV---------SLLSTMTTRQ 565 S E DE+ A + T+T LK K + RT+ G S LS +T + Sbjct 2682 SIPEIDEMCARAVKENWQTVTPCTLKKQYCSKPKTRTILGTNNFIALAHRSALSGVT-QA 2740 Query 566 YHQKHLKSIVNTRGASVVIGTTKFYGGWDNMLKNLIDGVENPCLMGWDYPKCDRALPNMI 625 + +K KS + +G KF K L V CL D CDR+ P ++ Sbjct 2741 FMKKAWKS-------PIALGKNKF--------KELHCTVAGRCLEA-DLASCDRSTPAIV 2784 Query 626 RMISAMILGSKHTTCCSSTDRFFRLCNELAQVLTEVVYSNGGFYLKPGGTTSGDATTAYA 685 R A +L + C + C ++V + G + K GG +SGD T+ + Sbjct 2785 RWFVANLL-YELAGCEEYLPSYVLNCCH------DLVATQDGAFTKRGGLSSGDPVTSVS 2837 Query 686 NSVFNIFQAVSANVNKLLSVDSNVCHNLEVKQLQRKL 722 N+V+++ V L + H + +K L+ +L Sbjct 2838 NTVYSLIIYAQHMVLSALKMG----HEIGLKFLEEQL 2870 >RecName: Full=Replicase polyprotein 1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Nsp1; Contains: RecName: Full=Nsp1-alpha papain-like cysteine proteinase; AltName: Full=PCP1-alpha; Contains: RecName: Full=Nsp1-beta papain-like cysteine proteinase; AltName: Full=PCP1-beta; Contains: RecName: Full=Nsp2 cysteine proteinase; AltName: Full=CP2; Short=CP; Contains: RecName: Full=Non-structural protein 3; Short=Nsp3; Contains: RecName: Full=Serine protease nsp4; Short=3CLSP; AltName: Full=3C-like serine proteinase; AltName: Full=Nsp4; Contains: RecName: Full=Non-structural protein 5-6-7; Short=Nsp5-6-7; Contains: RecName: Full=Non-structural protein 5; Short=Nsp5; Contains: RecName: Full=Non-structural protein 6; Short=Nsp6; Contains: RecName: Full=Non-structural protein 7-alpha; Short=Nsp7-alpha; Contains: RecName: Full=Non-structural protein 7-beta; Short=Nsp7-beta; Contains: RecName: Full=Non-structural protein 8; Short=Nsp8; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=Nsp9; Contains: RecName: Full=Helicase nsp10; Short=Hel; AltName: Full=Nsp10; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp11; AltName: Full=Non-structural protein 11; Short=Nsp11; Contains: RecName: Full=Non-structural protein 12; Short=Nsp12 [Lelystad virus] Sequence ID: Q04561.3 Length: 3855 Range 1: 2699 to 2860 Score:41.6 bits(96), Expect:0.047, Method:Compositional matrix adjust., Identities:44/178(25%), Positives:73/178(41%), Gaps:17/178(9%) Query 515 SYEEQDELYAYTKRNILPTMTQLNLKYAISGKERARTVGGVSLLSTMTTRQYHQKHLKSI 574 S E DE+ A + T+T LK K + RT+ G + + R ++ Sbjct 2699 SIPEIDEMCARAVKENWQTVTPCTLKKQYCSKPKTRTILGTNNFIALAHRSALSGVTQAF 2758 Query 575 VNTRGAS-VVIGTTKFYGGWDNMLKNLIDGVENPCLMGWDYPKCDRALPNMIRMISAMIL 633 + S + +G KF K L V CL D CDR+ P ++R A +L Sbjct 2759 MKKAWKSPIALGKNKF--------KELHCTVAGRCLEA-DLASCDRSTPAIVRWFVANLL 2809 Query 634 GSKHTTCCSSTDRFFRLCNELAQVLTEVVYSNGGFYLKPGGTTSGDATTAYANSVFNI 691 + C + C ++V + G + K GG +SGD T+ +N+V+++ Sbjct 2810 -YELAGCEEYLPSYVLNCCH------DLVATQDGAFTKRGGLSSGDPVTSVSNTVYSL 2860 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1 protease; AltName: Full=Leader protease P1; AltName: Full=N-terminal protein; AltName: Full=P1 proteinase; Contains: RecName: Full=Helper component proteinase; Short=HC-pro; Contains: RecName: Full=Protein P3; Contains: RecName: Full=6 kDa protein 1; Short=6K1; Contains: RecName: Full=Cytoplasmic inclusion protein; Short=CI; Contains: RecName: Full=6 kDa protein 2; Short=6K2; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Nuclear inclusion protein A; Short=NI-a; Short=NIa; AltName: Full=49 kDa proteinase; Short=49 kDa-Pro; AltName: Full=NIa-pro; Contains: RecName: Full=Nuclear inclusion protein B; Short=NI-b; Short=NIb; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Capsid protein; Short=CP; AltName: Full=Coat protein [Peanut mottle virus (strain M)] Sequence ID: O56075.1 Length: 3099 Range 1: 2406 to 2544 Score:41.2 bits(95), Expect:0.047, Method:Compositional matrix adjust., Identities:45/147(31%), Positives:63/147(42%), Gaps:27/147(18%) Query 476 DIYEGGC--ITAKEVVVTNLNKSAGYPLNKFGKAGLYYESLSYEEQDEL-YAYTKRNILP 532 D+ G C +T +E ++ +LN A GK Y+ESLS E+ + A +R Sbjct 2406 DLGFGECAYVTDEEAILDSLNMKAAVGALYKGKKKEYFESLSEPEKHHIVQASCERLFYG 2465 Query 533 TMTQLN--LKYAISGKER-----ART---------VGGVSLLSTMTTRQYHQKHLKSIVN 576 M N LK + KE+ RT +GG + R Y +N Sbjct 2466 EMGVWNGSLKAELRPKEKVALNKTRTFTAAPIDTLLGGKCCVDDFNNRFYS-------LN 2518 Query 577 TRGASVVIGTTKFYGGWDNMLKNLIDG 603 G V G TKFYGGWD +++ L DG Sbjct 2519 IEGPWTV-GMTKFYGGWDKLMRKLPDG 2544