RID: A5U8K8V5013 Job Title:POL_HV1H2 P04585 Gag-Pol polyprotein (Pr160Gag-Pol)... Program: BLASTP Query: POL_HV1H2 P04585 Gag-Pol polyprotein (Pr160Gag-Pol) (Matrix protein p17) ID: lcl|Query_7811(amino acid) Length: 131 Database: swissprot Non-redundant UniProtKB/SwissProt sequences Sequences producing significant alignments: Scientific Common Max Total Query E Per. Acc. Description Name Name Taxid Score Score cover Value Ident Len Accession RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains... HIV-1 M:B_HXB2R NA 11706 270 270 100% 5e-89 100.00 500 P04591.3 RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains... Human immuno... NA 11678 268 268 100% 3e-88 99.24 512 P03347.3 RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains... Human immuno... NA 11682 268 268 100% 3e-88 99.24 512 P04593.3 RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains... Human immuno... NA 11686 268 268 100% 3e-88 99.24 512 P03348.3 RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains... Human immuno... NA 82834 262 262 100% 4e-86 96.95 500 Q70622.3 RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains... Human immuno... NA 11705 258 258 100% 5e-86 95.42 389 P05889.3 RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains... Human immuno... NA 11687 257 257 100% 3e-84 93.89 500 P05887.3 RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains... HIV-1 M:B_89.6 NA 401671 257 257 100% 4e-84 95.42 500 Q73367.3 RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains... Human immuno... NA 11698 256 256 100% 8e-84 93.13 500 P12493.3 RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains... Human immuno... NA 11694 255 255 100% 2e-83 93.89 500 P12494.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:B_HXB2R NA 11706 269 269 100% 2e-83 100.00 1435 P04585.4 RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains... Human immuno... NA 11699 255 255 100% 2e-83 92.37 499 P20889.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11687 256 256 100% 2e-83 93.89 550 P05960.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11694 255 255 100% 4e-83 93.89 532 P12498.4 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11678 266 266 100% 1e-82 99.24 1447 P03366.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11686 266 266 100% 1e-82 99.24 1447 P03367.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11682 266 266 100% 1e-82 99.24 1447 P04587.3 RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains... Human immuno... NA 362651 253 253 100% 2e-82 92.37 500 P35962.2 RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains... Human immuno... NA 11688 251 251 100% 5e-82 93.13 504 P20873.3 RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains... HIV-1 M:B_MN NA 11696 248 248 100% 8e-81 91.04 507 P05888.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 82834 261 261 100% 9e-81 96.95 1435 P0C6F2.1 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:B_89.6 NA 401671 255 255 100% 8e-79 95.42 1435 Q73368.3 RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains... Human immuno... NA 11701 243 243 100% 8e-79 88.55 501 P05890.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11698 255 255 100% 1e-78 93.13 1435 P12497.4 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11699 254 254 100% 2e-78 92.37 1434 P20892.3 RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains... Human immuno... NA 11689 241 241 100% 6e-78 85.50 500 P04592.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 362651 251 251 100% 2e-77 92.37 1435 P35963.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:B_MN NA 11696 251 251 100% 3e-77 92.54 1441 P05961.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11688 250 250 100% 4e-77 93.13 1439 P20875.3 RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains... HIV-1 M:B_AR... NA 11685 234 234 100% 3e-75 93.23 502 P03349.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11701 242 242 100% 3e-74 88.55 1436 P05959.3 RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains... Human immuno... NA 11695 231 231 100% 5e-74 83.21 497 P18800.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11689 240 240 100% 2e-73 85.50 1435 P04589.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:B_AR... NA 11685 233 233 100% 5e-71 93.23 1437 P03369.3 RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains... HIV-1 M:K_96... NA 388906 221 221 100% 4e-70 80.15 495 Q9QBY4.2 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11695 229 229 100% 8e-70 83.21 1432 P18802.3 RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains... HIV-1 M:G_SE... NA 388824 218 218 100% 3e-69 77.10 495 O89939.3 RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains... HIV-1 M:F2_M... NA 388823 218 218 100% 6e-69 77.10 496 Q9QBZ2.2 RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains... Human immuno... NA 11703 217 217 100% 1e-68 78.63 493 P24736.3 RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains... HIV-1 M:J_SE... NA 388904 216 216 100% 2e-68 76.34 497 Q9WC62.3 RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains... Human immuno... NA 11683 216 216 100% 2e-68 83.33 501 P12495.3 RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains... HIV-1 M:H_90... NA 388826 216 216 100% 3e-68 76.34 500 O93182.3 RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains... HIV-1 M:J_SE... NA 388905 214 214 100% 1e-67 75.57 497 Q9WC53.3 RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains... HIV-1 M:K_97... NA 388907 212 212 100% 8e-67 77.86 495 Q9QC00.2 RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains... HIV-1 M:H_VI991 NA 388888 211 211 100% 2e-66 74.44 498 Q9Q721.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:K_96... NA 388906 220 220 100% 2e-66 80.15 1430 Q9QBY3.3 RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains... HIV-1 M:F1_V... NA 388813 209 209 100% 1e-65 76.34 491 Q9QSR4.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:G_SE... NA 388824 218 218 100% 1e-65 77.10 1433 O89940.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:F2_M... NA 388823 217 217 100% 2e-65 77.10 1434 Q9QBZ1.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:J_SE... NA 388904 216 216 100% 4e-65 76.34 1432 Q9WC63.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11703 216 216 100% 6e-65 78.63 1428 P24740.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11683 216 216 100% 7e-65 83.33 1436 P12499.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:H_90... NA 388826 215 215 100% 9e-65 76.34 1435 O93215.4 RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains... Human immuno... NA 11697 207 207 100% 1e-64 77.37 505 P04594.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:J_SE... NA 388905 214 214 100% 3e-64 75.57 1432 Q9WC54.3 RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains... HIV-1 M:F2_M... NA 388815 203 203 100% 2e-63 74.05 492 Q9QBZ6.2 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:K_97... NA 388907 211 211 100% 2e-63 77.86 1429 Q9QBZ9.2 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:H_VI991 NA 388888 211 211 100% 4e-63 74.44 1436 Q9Q720.3 RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains... HIV-1 M:C_92... NA 388812 202 202 100% 4e-63 72.73 496 O12157.3 RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains... HIV-1 M:C_ET... NA 388796 201 201 100% 1e-62 74.24 504 Q75001.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:F1_V... NA 388813 208 208 100% 3e-62 76.34 1430 Q9QSR3.3 RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains... HIV-1 M:G_92... NA 388825 199 199 100% 1e-61 74.05 497 P0C1K7.2 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11697 206 206 100% 1e-61 77.37 1440 P04588.3 RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains... HIV-1 M:F1_9... NA 388814 198 198 100% 3e-61 78.63 492 O89291.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:F2_M... NA 388815 202 202 100% 2e-60 74.05 1430 Q9QBZ5.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:C_92... NA 388812 201 201 100% 6e-60 72.73 1431 O12158.2 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:C_ET... NA 388796 200 200 100% 2e-59 74.24 1439 Q75002.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:G_92... NA 388825 198 198 100% 8e-59 74.05 1435 O41798.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:F1_9... NA 388814 197 197 100% 2e-58 78.63 1430 O89290.3 RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains... SIVcpz MB66 NA 388911 186 186 100% 9e-57 65.65 499 Q1A268.3 RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains... HIV-1 N_YBF30 NA 388818 186 186 100% 2e-56 63.91 512 O91079.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... SIVcpz MB66 NA 388911 186 186 100% 2e-54 65.65 1438 Q1A267.4 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 N_YBF30 NA 388818 184 184 100% 6e-54 63.91 1449 O91080.3 RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains... HIV-1 N_YBF106 NA 388819 178 178 100% 1e-53 62.41 511 Q9IDV8.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 N_YBF106 NA 388819 177 177 100% 2e-51 62.41 1449 Q9IDV9.3 RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains... SIVcpz EK505 NA 388912 171 171 100% 7e-51 60.45 511 Q1A250.3 RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains... HIV-1 O_MVP5180 NA 388816 167 167 100% 2e-49 58.78 498 Q79665.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... SIVcpz EK505 NA 388912 169 169 100% 8e-49 60.45 1448 Q1A249.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 O_MVP5180 NA 388816 166 166 100% 1e-47 58.78 1446 Q79666.3 RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains... SIVcpz GAB1 NA 402771 162 162 100% 2e-47 55.40 508 P17282.1 RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains... HIV-1 O_ANT70 NA 327105 152 152 100% 7e-44 57.25 498 Q77372.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 O_ANT70 NA 327105 152 152 100% 1e-42 57.25 1435 Q77373.3 RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains... SIVcpz TAN1 NA 388910 131 131 79% 7e-36 56.73 524 Q8AII2.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... SIVcpz TAN1 NA 388910 131 131 76% 3e-35 59.00 1462 Q8AII1.4 RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains... Human immuno... NA 11721 126 126 79% 5e-34 57.69 521 P20874.3 RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains... Human immuno... NA 11715 126 126 75% 6e-34 59.60 521 P24106.3 RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains... HIV-2 B_UC1 NA 388822 125 125 75% 8e-34 58.59 521 Q76633.3 RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains... Simian immun... NA 11738 125 125 75% 9e-34 60.61 507 P19504.1 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11715 126 126 75% 1e-33 59.60 1462 P24107.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11721 126 126 79% 1e-33 57.69 1463 P20876.3 RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains... Simian immun... NA 31683 124 124 75% 2e-33 57.58 510 P31634.1 RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains... Simian immun... NA 11733 124 124 75% 2e-33 59.60 506 P05894.1 RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains... Human immuno... NA 11719 124 124 75% 2e-33 59.60 519 P05891.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Simian immun... NA 11738 125 125 75% 2e-33 60.61 1449 P19505.2 RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains... Human immuno... NA 11718 124 124 75% 3e-33 57.58 520 P12450.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-2 B_UC1 NA 388822 125 125 75% 3e-33 58.59 1471 Q76634.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11719 125 125 75% 4e-33 59.60 1461 P05962.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Simian immun... NA 11733 125 125 75% 5e-33 59.60 1448 P05896.2 RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains... Simian immun... NA 11735 123 123 75% 5e-33 58.59 506 P05893.1 RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains... Human immuno... NA 11716 124 124 75% 5e-33 57.58 521 P15832.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11718 124 124 75% 5e-33 57.58 1462 P12451.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Simian immun... NA 11735 124 124 75% 6e-33 59.60 1446 P05897.2 RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains... Human immuno... NA 11714 122 122 75% 1e-32 57.58 521 P18095.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11716 124 124 75% 1e-32 57.58 1465 P15833.3 RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains... Simian immun... NA 11737 122 122 75% 2e-32 57.58 507 P12496.1 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11714 122 122 75% 2e-32 57.58 1550 P18096.4 RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains... Human immuno... NA 11717 121 121 75% 3e-32 57.58 522 P18041.3 RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains... Human immuno... NA 11713 121 121 75% 4e-32 55.56 521 P17756.4 RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains... Human immuno... NA 11720 121 121 100% 4e-32 45.52 522 P04590.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Simian immun... NA 11737 122 122 75% 4e-32 57.58 1449 P12502.2 RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains... Human immuno... NA 73484 121 121 100% 5e-32 44.06 521 Q74119.3 RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains... HIV-2 B_EHO NA 388821 120 120 75% 5e-32 58.59 519 Q74230.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11720 121 121 75% 6e-32 56.57 1464 P04584.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11717 121 121 75% 6e-32 57.58 1464 P18042.4 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11713 121 121 75% 7e-32 55.56 1462 P17757.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 73484 121 121 75% 9e-32 56.57 1463 Q74120.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-2 B_EHO NA 388821 120 120 75% 1e-31 58.59 1464 Q89928.3 RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains... Simian immun... NA 11731 119 119 100% 2e-31 44.29 519 P05892.1 RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains... Simian immun... NA 11730 116 116 76% 3e-30 53.00 521 P27978.1 RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains... Simian immun... NA 11727 115 115 76% 7e-30 53.00 520 P27972.1 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Simian immun... NA 11730 115 115 76% 8e-30 53.00 1465 P27980.2 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Simian immun... NA 11731 115 115 76% 8e-30 53.00 1467 P05895.2 RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains... Simian immun... NA 31684 114 114 80% 2e-29 48.57 513 Q02843.1 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Simian immun... NA 11727 114 114 76% 2e-29 53.00 1470 P27973.2 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Simian immun... NA 31684 113 113 80% 5e-29 48.57 1472 Q02836.2 RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains... Simian immun... NA 11732 101 101 86% 4e-25 45.13 502 P22381.1 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Simian immun... NA 11732 101 101 89% 9e-25 43.59 1441 P22382.2 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... SIVcpz GAB1 NA 402771 85.9 85.9 33% 2e-19 81.82 1384 P17283.2 Alignments: >RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Spacer peptide 2; Short=SP2; AltName: Full=p1; Contains: RecName: Full=p6-gag [HIV-1 M:B_HXB2R] Sequence ID: P04591.3 Length: 500 Range 1: 2 to 132 Score:270 bits(689), Expect:5e-89, Method:Compositional matrix adjust., Identities:131/131(100%), Positives:131/131(100%), Gaps:0/131(0%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL Sbjct 2 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQAAAD 120 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQAAAD Sbjct 62 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQAAAD 121 Query 121 TGHSNQVSQNY 131 TGHSNQVSQNY Sbjct 122 TGHSNQVSQNY 132 >RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Spacer peptide 2; Short=SP2; AltName: Full=p1; Contains: RecName: Full=p6-gag [Human immunodeficiency virus type 1 BH10] Sequence ID: P03347.3 Length: 512 Range 1: 2 to 132 Score:268 bits(685), Expect:3e-88, Method:Compositional matrix adjust., Identities:130/131(99%), Positives:131/131(100%), Gaps:0/131(0%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL Sbjct 2 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQAAAD 120 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQAAAD Sbjct 62 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQAAAD 121 Query 121 TGHSNQVSQNY 131 TGHS+QVSQNY Sbjct 122 TGHSSQVSQNY 132 >RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Spacer peptide 2; Short=SP2; AltName: Full=p1; Contains: RecName: Full=p6-gag [Human immunodeficiency virus type 1 (BH5 ISOLATE)] Sequence ID: P04593.3 Length: 512 Range 1: 2 to 132 Score:268 bits(685), Expect:3e-88, Method:Compositional matrix adjust., Identities:130/131(99%), Positives:131/131(100%), Gaps:0/131(0%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL Sbjct 2 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQAAAD 120 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQAAAD Sbjct 62 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQAAAD 121 Query 121 TGHSNQVSQNY 131 TGHS+QVSQNY Sbjct 122 TGHSSQVSQNY 132 >RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Spacer peptide 2; Short=SP2; AltName: Full=p1; Contains: RecName: Full=p6-gag [Human immunodeficiency virus type 1 (BRU ISOLATE)] Sequence ID: P03348.3 Length: 512 Range 1: 2 to 132 Score:268 bits(684), Expect:3e-88, Method:Compositional matrix adjust., Identities:130/131(99%), Positives:131/131(100%), Gaps:0/131(0%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL Sbjct 2 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQAAAD 120 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQAAAD Sbjct 62 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQAAAD 121 Query 121 TGHSNQVSQNY 131 TGHS+QVSQNY Sbjct 122 TGHSSQVSQNY 132 >RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Spacer peptide 2; Short=SP2; AltName: Full=p1; Contains: RecName: Full=p6-gag [Human immunodeficiency virus type 1 lw12.3 isolate] Sequence ID: Q70622.3 Length: 500 Range 1: 2 to 132 Score:262 bits(669), Expect:4e-86, Method:Compositional matrix adjust., Identities:127/131(97%), Positives:130/131(99%), Gaps:0/131(0%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GARASVLSGG+LDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL Sbjct 2 GARASVLSGGKLDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQAAAD 120 GQLQPSLQTGSEE RSLYNTVATLYCVHQRIEIKDTKEALDKI+EEQNKSKKKAQQAAAD Sbjct 62 GQLQPSLQTGSEECRSLYNTVATLYCVHQRIEIKDTKEALDKIKEEQNKSKKKAQQAAAD 121 Query 121 TGHSNQVSQNY 131 TGHS+QVSQNY Sbjct 122 TGHSSQVSQNY 132 >RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC [Human immunodeficiency virus type 1 (WMJ2 ISOLATE)] Sequence ID: P05889.3 Length: 389 Range 1: 2 to 132 Score:258 bits(660), Expect:5e-86, Method:Compositional matrix adjust., Identities:125/131(95%), Positives:129/131(98%), Gaps:0/131(0%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GARASVLSGGELD+WEKIRLRPGGKKKY+LKHIVWASRELERFAVNPGLLETSEGCRQIL Sbjct 2 GARASVLSGGELDKWEKIRLRPGGKKKYRLKHIVWASRELERFAVNPGLLETSEGCRQIL 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQAAAD 120 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIE KDTKEALDKIEEEQNK KKKAQQAAAD Sbjct 62 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEKKDTKEALDKIEEEQNKCKKKAQQAAAD 121 Query 121 TGHSNQVSQNY 131 TG+S+QVSQNY Sbjct 122 TGNSSQVSQNY 132 >RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Spacer peptide 2; Short=SP2; AltName: Full=p1; Contains: RecName: Full=p6-gag [Human immunodeficiency virus type 1 (CDC-451 ISOLATE)] Sequence ID: P05887.3 Length: 500 Range 1: 2 to 132 Score:257 bits(657), Expect:3e-84, Method:Compositional matrix adjust., Identities:123/131(94%), Positives:131/131(100%), Gaps:0/131(0%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GARASVLSGGELDRWEKIRLRPGGKK+Y+LKHIVWASR+LERFAVNPGLLETS+GCRQIL Sbjct 2 GARASVLSGGELDRWEKIRLRPGGKKQYRLKHIVWASRKLERFAVNPGLLETSKGCRQIL 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQAAAD 120 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIE++DTKEALDKIEEEQNKSKKKAQQAAAD Sbjct 62 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEVRDTKEALDKIEEEQNKSKKKAQQAAAD 121 Query 121 TGHSNQVSQNY 131 TG+S+QVSQNY Sbjct 122 TGNSSQVSQNY 132 >RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Spacer peptide 2; Short=SP2; AltName: Full=p1; Contains: RecName: Full=p6-gag [HIV-1 M:B_89.6] Sequence ID: Q73367.3 Length: 500 Range 1: 2 to 132 Score:257 bits(656), Expect:4e-84, Method:Compositional matrix adjust., Identities:125/131(95%), Positives:129/131(98%), Gaps:0/131(0%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNP LLETSEGCRQIL Sbjct 2 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPSLLETSEGCRQIL 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQAAAD 120 GQLQ SLQTGSEEL+SLYNTVATLYCVHQRIE+KDTKEALDKIEEEQNKSKKKAQQAAAD Sbjct 62 GQLQSSLQTGSEELKSLYNTVATLYCVHQRIEVKDTKEALDKIEEEQNKSKKKAQQAAAD 121 Query 121 TGHSNQVSQNY 131 TG+S+QVSQNY Sbjct 122 TGNSSQVSQNY 132 >RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Spacer peptide 2; Short=SP2; AltName: Full=p1; Contains: RecName: Full=p6-gag [Human immunodeficiency virus type 1 (NEW YORK-5 ISOLATE)] Sequence ID: P12493.3 Length: 500 Range 1: 2 to 132 Score:256 bits(654), Expect:8e-84, Method:Compositional matrix adjust., Identities:122/131(93%), Positives:130/131(99%), Gaps:0/131(0%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GARASVLSGGELD+WEKIRLRPGGKK+YKLKHIVWASRELERFAVNPGLLETSEGCRQIL Sbjct 2 GARASVLSGGELDKWEKIRLRPGGKKQYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQAAAD 120 GQLQPSLQTGSEELRSLYNT+A LYCVHQRI++KDTKEALDKIEEEQNKSKKKAQQAAAD Sbjct 62 GQLQPSLQTGSEELRSLYNTIAVLYCVHQRIDVKDTKEALDKIEEEQNKSKKKAQQAAAD 121 Query 121 TGHSNQVSQNY 131 TG+++QVSQNY Sbjct 122 TGNNSQVSQNY 132 >RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Spacer peptide 2; Short=SP2; AltName: Full=p1; Contains: RecName: Full=p6-gag [Human immunodeficiency virus type 1 (JH3 ISOLATE)] Sequence ID: P12494.3 Length: 500 Range 1: 2 to 132 Score:255 bits(652), Expect:2e-83, Method:Compositional matrix adjust., Identities:123/131(94%), Positives:130/131(99%), Gaps:0/131(0%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNP LLETSEGCRQIL Sbjct 2 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPSLLETSEGCRQIL 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQAAAD 120 GQLQPSLQTGSEEL+SL+NTVATLYCVHQRIE+KDTKEAL+KIEEEQNKSKKKAQQAAAD Sbjct 62 GQLQPSLQTGSEELKSLFNTVATLYCVHQRIEVKDTKEALEKIEEEQNKSKKKAQQAAAD 121 Query 121 TGHSNQVSQNY 131 TG+S++VSQNY Sbjct 122 TGNSSKVSQNY 132 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:B_HXB2R] Sequence ID: P04585.4 Length: 1435 Range 1: 2 to 132 Score:269 bits(687), Expect:2e-83, Method:Compositional matrix adjust., Identities:131/131(100%), Positives:131/131(100%), Gaps:0/131(0%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL Sbjct 2 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQAAAD 120 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQAAAD Sbjct 62 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQAAAD 121 Query 121 TGHSNQVSQNY 131 TGHSNQVSQNY Sbjct 122 TGHSNQVSQNY 132 >RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Spacer peptide 2; Short=SP2; AltName: Full=p1; Contains: RecName: Full=p6-gag [Human immunodeficiency virus type 1 (OYI ISOLATE)] Sequence ID: P20889.3 Length: 499 Range 1: 2 to 132 Score:255 bits(651), Expect:2e-83, Method:Compositional matrix adjust., Identities:121/131(92%), Positives:130/131(99%), Gaps:0/131(0%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GARASVLSGGELD+WEKIRLRPGGKKKY+LKHIVWASRELERFA+NPGLLETSEGCRQIL Sbjct 2 GARASVLSGGELDKWEKIRLRPGGKKKYQLKHIVWASRELERFAINPGLLETSEGCRQIL 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQAAAD 120 GQLQPSL+TGSEE+RSLYNTVATLYCVHQ+IE+KDTKEALDKIEEEQNKSKKKAQQ AAD Sbjct 62 GQLQPSLKTGSEEIRSLYNTVATLYCVHQKIEVKDTKEALDKIEEEQNKSKKKAQQTAAD 121 Query 121 TGHSNQVSQNY 131 TG+S+QVSQNY Sbjct 122 TGNSSQVSQNY 132 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin [Human immunodeficiency virus type 1 (CDC-451 ISOLATE)] Sequence ID: P05960.3 Length: 550 Range 1: 2 to 132 Score:256 bits(655), Expect:2e-83, Method:Compositional matrix adjust., Identities:123/131(94%), Positives:131/131(100%), Gaps:0/131(0%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GARASVLSGGELDRWEKIRLRPGGKK+Y+LKHIVWASR+LERFAVNPGLLETS+GCRQIL Sbjct 2 GARASVLSGGELDRWEKIRLRPGGKKQYRLKHIVWASRKLERFAVNPGLLETSKGCRQIL 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQAAAD 120 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIE++DTKEALDKIEEEQNKSKKKAQQAAAD Sbjct 62 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEVRDTKEALDKIEEEQNKSKKKAQQAAAD 121 Query 121 TGHSNQVSQNY 131 TG+S+QVSQNY Sbjct 122 TGNSSQVSQNY 132 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin [Human immunodeficiency virus type 1 (JH3 ISOLATE)] Sequence ID: P12498.4 Length: 532 Range 1: 2 to 132 Score:255 bits(652), Expect:4e-83, Method:Compositional matrix adjust., Identities:123/131(94%), Positives:130/131(99%), Gaps:0/131(0%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNP LLETSEGCRQIL Sbjct 2 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPSLLETSEGCRQIL 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQAAAD 120 GQLQPSLQTGSEEL+SL+NTVATLYCVHQRIE+KDTKEAL+KIEEEQNKSKKKAQQAAAD Sbjct 62 GQLQPSLQTGSEELKSLFNTVATLYCVHQRIEVKDTKEALEKIEEEQNKSKKKAQQAAAD 121 Query 121 TGHSNQVSQNY 131 TG+S++VSQNY Sbjct 122 TGNSSKVSQNY 132 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 BH10] Sequence ID: P03366.3 Length: 1447 Range 1: 2 to 132 Score:266 bits(681), Expect:1e-82, Method:Compositional matrix adjust., Identities:130/131(99%), Positives:131/131(100%), Gaps:0/131(0%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL Sbjct 2 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQAAAD 120 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQAAAD Sbjct 62 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQAAAD 121 Query 121 TGHSNQVSQNY 131 TGHS+QVSQNY Sbjct 122 TGHSSQVSQNY 132 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 (BRU ISOLATE)] Sequence ID: P03367.3 Length: 1447 Range 1: 2 to 132 Score:266 bits(681), Expect:1e-82, Method:Compositional matrix adjust., Identities:130/131(99%), Positives:131/131(100%), Gaps:0/131(0%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL Sbjct 2 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQAAAD 120 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQAAAD Sbjct 62 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQAAAD 121 Query 121 TGHSNQVSQNY 131 TGHS+QVSQNY Sbjct 122 TGHSSQVSQNY 132 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 (BH5 ISOLATE)] Sequence ID: P04587.3 Length: 1447 Range 1: 2 to 132 Score:266 bits(681), Expect:1e-82, Method:Compositional matrix adjust., Identities:130/131(99%), Positives:131/131(100%), Gaps:0/131(0%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL Sbjct 2 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQAAAD 120 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQAAAD Sbjct 62 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQAAAD 121 Query 121 TGHSNQVSQNY 131 TGHS+QVSQNY Sbjct 122 TGHSSQVSQNY 132 >RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Spacer peptide 2; Short=SP2; AltName: Full=p1; Contains: RecName: Full=p6-gag [Human immunodeficiency virus type 1 (isolate YU2)] Sequence ID: P35962.2 Length: 500 Range 1: 2 to 132 Score:253 bits(645), Expect:2e-82, Method:Compositional matrix adjust., Identities:121/131(92%), Positives:130/131(99%), Gaps:0/131(0%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GARASVLS GELD+WEKIRLRPGGKK+Y+LKHIVWASRELERFAV+PGLLETSEGCRQIL Sbjct 2 GARASVLSAGELDKWEKIRLRPGGKKQYRLKHIVWASRELERFAVDPGLLETSEGCRQIL 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQAAAD 120 GQLQPSLQTGSEELRSLYNTVATLYCVHQ+IE+KDTKEAL+KIEEEQNKSKKKAQQAAAD Sbjct 62 GQLQPSLQTGSEELRSLYNTVATLYCVHQKIEVKDTKEALEKIEEEQNKSKKKAQQAAAD 121 Query 121 TGHSNQVSQNY 131 TG+S+QVSQNY Sbjct 122 TGNSSQVSQNY 132 >RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Spacer peptide 2; Short=SP2; AltName: Full=p1; Contains: RecName: Full=p6-gag [Human immunodeficiency virus type 1 (JRCSF ISOLATE)] Sequence ID: P20873.3 Length: 504 Range 1: 2 to 132 Score:251 bits(642), Expect:5e-82, Method:Compositional matrix adjust., Identities:122/131(93%), Positives:128/131(97%), Gaps:0/131(0%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GARASVLSGGELDRWEKIRLRPGGKKKY+LKHIVWASRELERFAVNPGLLE+SEGCRQIL Sbjct 2 GARASVLSGGELDRWEKIRLRPGGKKKYRLKHIVWASRELERFAVNPGLLESSEGCRQIL 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQAAAD 120 GQLQPSL+TGSEEL SLYNTVATLYCVHQRIEIKDTKEAL+KIEEEQ KS KKAQQAAAD Sbjct 62 GQLQPSLKTGSEELTSLYNTVATLYCVHQRIEIKDTKEALEKIEEEQTKSMKKAQQAAAD 121 Query 121 TGHSNQVSQNY 131 TG+S+QVSQNY Sbjct 122 TGNSSQVSQNY 132 >RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Spacer peptide 2; Short=SP2; AltName: Full=p1; Contains: RecName: Full=p6-gag [HIV-1 M:B_MN] Sequence ID: P05888.3 Length: 507 Range 1: 2 to 135 Score:248 bits(634), Expect:8e-81, Method:Compositional matrix adjust., Identities:122/134(91%), Positives:130/134(97%), Gaps:3/134(2%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GARASVLSGGELDRWEKIRLRPGGKKKYKLKH+VWASRELERFA+NPGLLETSEGCRQIL Sbjct 2 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHVVWASRELERFAINPGLLETSEGCRQIL 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQAAAD 120 GQLQPSLQTGSEE +SLYNTVATLYCVHQ+I+IKDTKEAL+KIEEEQNKSKKKAQQAAAD Sbjct 62 GQLQPSLQTGSEERKSLYNTVATLYCVHQKIKIKDTKEALEKIEEEQNKSKKKAQQAAAD 121 Query 121 T---GHSNQVSQNY 131 T G+S+QVSQNY Sbjct 122 TGNRGNSSQVSQNY 135 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 lw12.3 isolate] Sequence ID: P0C6F2.1 Length: 1435 Range 1: 2 to 132 Score:261 bits(667), Expect:9e-81, Method:Compositional matrix adjust., Identities:127/131(97%), Positives:130/131(99%), Gaps:0/131(0%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GARASVLSGG+LDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL Sbjct 2 GARASVLSGGKLDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQAAAD 120 GQLQPSLQTGSEE RSLYNTVATLYCVHQRIEIKDTKEALDKI+EEQNKSKKKAQQAAAD Sbjct 62 GQLQPSLQTGSEECRSLYNTVATLYCVHQRIEIKDTKEALDKIKEEQNKSKKKAQQAAAD 121 Query 121 TGHSNQVSQNY 131 TGHS+QVSQNY Sbjct 122 TGHSSQVSQNY 132 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:B_89.6] Sequence ID: Q73368.3 Length: 1435 Range 1: 2 to 132 Score:255 bits(652), Expect:8e-79, Method:Compositional matrix adjust., Identities:125/131(95%), Positives:129/131(98%), Gaps:0/131(0%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNP LLETSEGCRQIL Sbjct 2 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPSLLETSEGCRQIL 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQAAAD 120 GQLQ SLQTGSEEL+SLYNTVATLYCVHQRIE+KDTKEALDKIEEEQNKSKKKAQQAAAD Sbjct 62 GQLQSSLQTGSEELKSLYNTVATLYCVHQRIEVKDTKEALDKIEEEQNKSKKKAQQAAAD 121 Query 121 TGHSNQVSQNY 131 TG+S+QVSQNY Sbjct 122 TGNSSQVSQNY 132 >RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Spacer peptide 2; Short=SP2; AltName: Full=p1; Contains: RecName: Full=p6-gag [Human immunodeficiency virus type 1 (RF/HAT ISOLATE)] Sequence ID: P05890.3 Length: 501 Range 1: 2 to 132 Score:243 bits(621), Expect:8e-79, Method:Compositional matrix adjust., Identities:116/131(89%), Positives:126/131(96%), Gaps:0/131(0%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GARASVLSGG+LD+WEKIRLRP GKK+YKLKHIVWASRELERFAVNP LLET+EGCRQIL Sbjct 2 GARASVLSGGKLDKWEKIRLRPRGKKRYKLKHIVWASRELERFAVNPSLLETAEGCRQIL 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQAAAD 120 GQLQP+LQTGSEEL+SLYN VATLYCVHQ IE++DTKEALDKIEEEQNKSKKKAQQAAAD Sbjct 62 GQLQPALQTGSEELKSLYNAVATLYCVHQNIEVRDTKEALDKIEEEQNKSKKKAQQAAAD 121 Query 121 TGHSNQVSQNY 131 TG+ +QVSQNY Sbjct 122 TGNGSQVSQNY 132 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 (NEW YORK-5 ISOLATE)] Sequence ID: P12497.4 Length: 1435 Range 1: 2 to 132 Score:255 bits(651), Expect:1e-78, Method:Compositional matrix adjust., Identities:122/131(93%), Positives:130/131(99%), Gaps:0/131(0%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GARASVLSGGELD+WEKIRLRPGGKK+YKLKHIVWASRELERFAVNPGLLETSEGCRQIL Sbjct 2 GARASVLSGGELDKWEKIRLRPGGKKQYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQAAAD 120 GQLQPSLQTGSEELRSLYNT+A LYCVHQRI++KDTKEALDKIEEEQNKSKKKAQQAAAD Sbjct 62 GQLQPSLQTGSEELRSLYNTIAVLYCVHQRIDVKDTKEALDKIEEEQNKSKKKAQQAAAD 121 Query 121 TGHSNQVSQNY 131 TG+++QVSQNY Sbjct 122 TGNNSQVSQNY 132 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 (OYI ISOLATE)] Sequence ID: P20892.3 Length: 1434 Range 1: 2 to 132 Score:254 bits(649), Expect:2e-78, Method:Compositional matrix adjust., Identities:121/131(92%), Positives:130/131(99%), Gaps:0/131(0%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GARASVLSGGELD+WEKIRLRPGGKKKY+LKHIVWASRELERFA+NPGLLETSEGCRQIL Sbjct 2 GARASVLSGGELDKWEKIRLRPGGKKKYQLKHIVWASRELERFAINPGLLETSEGCRQIL 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQAAAD 120 GQLQPSL+TGSEE+RSLYNTVATLYCVHQ+IE+KDTKEALDKIEEEQNKSKKKAQQ AAD Sbjct 62 GQLQPSLKTGSEEIRSLYNTVATLYCVHQKIEVKDTKEALDKIEEEQNKSKKKAQQTAAD 121 Query 121 TGHSNQVSQNY 131 TG+S+QVSQNY Sbjct 122 TGNSSQVSQNY 132 >RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Spacer peptide 2; Short=SP2; AltName: Full=p1; Contains: RecName: Full=p6-gag [Human immunodeficiency virus type 1 (ELI ISOLATE)] Sequence ID: P04592.3 Length: 500 Range 1: 2 to 132 Score:241 bits(615), Expect:6e-78, Method:Compositional matrix adjust., Identities:112/131(85%), Positives:130/131(99%), Gaps:0/131(0%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GARASVLSGG+LD+WEKIRLRPGGKKKY+LKHIVWASRELER+A+NPGLLETSEGC+QI+ Sbjct 2 GARASVLSGGKLDKWEKIRLRPGGKKKYRLKHIVWASRELERYALNPGLLETSEGCKQII 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQAAAD 120 GQLQP++QTG+EELRSLYNTVATLYCVH+ I++KDTKEAL+K+EEEQNKSKKKAQQAAAD Sbjct 62 GQLQPAIQTGTEELRSLYNTVATLYCVHKGIDVKDTKEALEKMEEEQNKSKKKAQQAAAD 121 Query 121 TGHSNQVSQNY 131 TG+++QVSQNY Sbjct 122 TGNNSQVSQNY 132 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 (isolate YU2)] Sequence ID: P35963.3 Length: 1435 Range 1: 2 to 132 Score:251 bits(642), Expect:2e-77, Method:Compositional matrix adjust., Identities:121/131(92%), Positives:130/131(99%), Gaps:0/131(0%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GARASVLS GELD+WEKIRLRPGGKK+Y+LKHIVWASRELERFAV+PGLLETSEGCRQIL Sbjct 2 GARASVLSAGELDKWEKIRLRPGGKKQYRLKHIVWASRELERFAVDPGLLETSEGCRQIL 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQAAAD 120 GQLQPSLQTGSEELRSLYNTVATLYCVHQ+IE+KDTKEAL+KIEEEQNKSKKKAQQAAAD Sbjct 62 GQLQPSLQTGSEELRSLYNTVATLYCVHQKIEVKDTKEALEKIEEEQNKSKKKAQQAAAD 121 Query 121 TGHSNQVSQNY 131 TG+S+QVSQNY Sbjct 122 TGNSSQVSQNY 132 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:B_MN] Sequence ID: P05961.3 Length: 1441 Range 1: 2 to 135 Score:251 bits(640), Expect:3e-77, Method:Compositional matrix adjust., Identities:124/134(93%), Positives:130/134(97%), Gaps:3/134(2%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GARASVLSGGELDRWE IRLRPGGKKKYKLKH+VWASRELERFAVNPGLLETSEGCRQIL Sbjct 2 GARASVLSGGELDRWENIRLRPGGKKKYKLKHVVWASRELERFAVNPGLLETSEGCRQIL 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQAAAD 120 GQLQPSLQTGSEEL+SLYNTVATLYCVHQ+IEIKDTKEAL+KIEEEQNKSKKKAQQAAAD Sbjct 62 GQLQPSLQTGSEELKSLYNTVATLYCVHQKIEIKDTKEALEKIEEEQNKSKKKAQQAAAD 121 Query 121 T---GHSNQVSQNY 131 T G+S+QVSQNY Sbjct 122 TGNRGNSSQVSQNY 135 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 (JRCSF ISOLATE)] Sequence ID: P20875.3 Length: 1439 Range 1: 2 to 132 Score:250 bits(639), Expect:4e-77, Method:Compositional matrix adjust., Identities:122/131(93%), Positives:128/131(97%), Gaps:0/131(0%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GARASVLSGGELDRWEKIRLRPGGKKKY+LKHIVWASRELERFAVNPGLLE+SEGCRQIL Sbjct 2 GARASVLSGGELDRWEKIRLRPGGKKKYRLKHIVWASRELERFAVNPGLLESSEGCRQIL 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQAAAD 120 GQLQPSL+TGSEEL SLYNTVATLYCVHQRIEIKDTKEAL+KIEEEQ KS KKAQQAAAD Sbjct 62 GQLQPSLKTGSEELTSLYNTVATLYCVHQRIEIKDTKEALEKIEEEQTKSMKKAQQAAAD 121 Query 121 TGHSNQVSQNY 131 TG+S+QVSQNY Sbjct 122 TGNSSQVSQNY 132 >RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Spacer peptide 2; Short=SP2; AltName: Full=p1; Contains: RecName: Full=p6-gag [HIV-1 M:B_ARV2/SF2] Sequence ID: P03349.3 Length: 502 Range 1: 2 to 134 Score:234 bits(596), Expect:3e-75, Method:Compositional matrix adjust., Identities:124/133(93%), Positives:130/133(97%), Gaps:2/133(1%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GARASVLSGGELD+WEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL Sbjct 2 GARASVLSGGELDKWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQAAAD 120 GQLQPSLQTGSEELRSLYNTVATLYCVHQRI++KDTKEAL+KIEEEQNKSKKKAQQAAA Sbjct 62 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIDVKDTKEALEKIEEEQNKSKKKAQQAAAA 121 Query 121 --TGHSNQVSQNY 131 TG+S+QVSQNY Sbjct 122 AGTGNSSQVSQNY 134 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 (RF/HAT ISOLATE)] Sequence ID: P05959.3 Length: 1436 Range 1: 2 to 132 Score:242 bits(618), Expect:3e-74, Method:Compositional matrix adjust., Identities:116/131(89%), Positives:126/131(96%), Gaps:0/131(0%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GARASVLSGG+LD+WEKIRLRP GKK+YKLKHIVWASRELERFAVNP LLET+EGCRQIL Sbjct 2 GARASVLSGGKLDKWEKIRLRPRGKKRYKLKHIVWASRELERFAVNPSLLETAEGCRQIL 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQAAAD 120 GQLQP+LQTGSEEL+SLYN VATLYCVHQ IE++DTKEALDKIEEEQNKSKKKAQQAAAD Sbjct 62 GQLQPALQTGSEELKSLYNAVATLYCVHQNIEVRDTKEALDKIEEEQNKSKKKAQQAAAD 121 Query 121 TGHSNQVSQNY 131 TG+ +QVSQNY Sbjct 122 TGNGSQVSQNY 132 >RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Spacer peptide 2; Short=SP2; AltName: Full=p1; Contains: RecName: Full=p6-gag [Human immunodeficiency virus type 1 (NDK ISOLATE)] Sequence ID: P18800.3 Length: 497 Range 1: 2 to 129 Score:231 bits(588), Expect:5e-74, Method:Compositional matrix adjust., Identities:109/131(83%), Positives:124/131(94%), Gaps:3/131(2%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GARASVLSGG+LD WE+IRLRPGGKKKY LKH++WASRELERF +NPGLLETSEGC+QI+ Sbjct 2 GARASVLSGGKLDTWERIRLRPGGKKKYALKHLIWASRELERFTLNPGLLETSEGCKQII 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQAAAD 120 GQLQPS+QTGSEE+RSLYNTVATLYCVH+RIE+KDTKEA++K+EEEQNKSKKK QQAAAD Sbjct 62 GQLQPSIQTGSEEIRSLYNTVATLYCVHERIEVKDTKEAVEKMEEEQNKSKKKTQQAAAD 121 Query 121 TGHSNQVSQNY 131 S+QVSQNY Sbjct 122 ---SSQVSQNY 129 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 (ELI ISOLATE)] Sequence ID: P04589.3 Length: 1435 Range 1: 2 to 132 Score:240 bits(613), Expect:2e-73, Method:Compositional matrix adjust., Identities:112/131(85%), Positives:130/131(99%), Gaps:0/131(0%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GARASVLSGG+LD+WEKIRLRPGGKKKY+LKHIVWASRELER+A+NPGLLETSEGC+QI+ Sbjct 2 GARASVLSGGKLDKWEKIRLRPGGKKKYRLKHIVWASRELERYALNPGLLETSEGCKQII 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQAAAD 120 GQLQP++QTG+EELRSLYNTVATLYCVH+ I++KDTKEAL+K+EEEQNKSKKKAQQAAAD Sbjct 62 GQLQPAIQTGTEELRSLYNTVATLYCVHKGIDVKDTKEALEKMEEEQNKSKKKAQQAAAD 121 Query 121 TGHSNQVSQNY 131 TG+++QVSQNY Sbjct 122 TGNNSQVSQNY 132 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:B_ARV2/SF2] Sequence ID: P03369.3 Length: 1437 Range 1: 2 to 134 Score:233 bits(594), Expect:5e-71, Method:Compositional matrix adjust., Identities:124/133(93%), Positives:130/133(97%), Gaps:2/133(1%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GARASVLSGGELD+WEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL Sbjct 2 GARASVLSGGELDKWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQAAAD 120 GQLQPSLQTGSEELRSLYNTVATLYCVHQRI++KDTKEAL+KIEEEQNKSKKKAQQAAA Sbjct 62 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIDVKDTKEALEKIEEEQNKSKKKAQQAAAA 121 Query 121 --TGHSNQVSQNY 131 TG+S+QVSQNY Sbjct 122 AGTGNSSQVSQNY 134 >RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Spacer peptide 2; Short=SP2; AltName: Full=p1; Contains: RecName: Full=p6-gag [HIV-1 M:K_96CM-MP535] Sequence ID: Q9QBY4.2 Length: 495 Range 1: 2 to 128 Score:221 bits(562), Expect:4e-70, Method:Compositional matrix adjust., Identities:105/131(80%), Positives:120/131(91%), Gaps:4/131(3%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GARASVLSGG+LD WEKIRLRPGGKKKYKLKH+VWASRELERFA+NPGLLET+EGCRQI+ Sbjct 2 GARASVLSGGKLDAWEKIRLRPGGKKKYKLKHLVWASRELERFALNPGLLETTEGCRQII 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQAAAD 120 Q+QPS+QTGSEE++SLYNT+A LY VHQ+IE+KDTKEALDK+EEEQNKS++K QQ AAD Sbjct 62 TQIQPSIQTGSEEIKSLYNTIAVLYFVHQKIEVKDTKEALDKLEEEQNKSQRKTQQEAAD 121 Query 121 TGHSNQVSQNY 131 G VSQNY Sbjct 122 KG----VSQNY 128 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 (NDK ISOLATE)] Sequence ID: P18802.3 Length: 1432 Range 1: 2 to 129 Score:229 bits(585), Expect:8e-70, Method:Compositional matrix adjust., Identities:109/131(83%), Positives:124/131(94%), Gaps:3/131(2%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GARASVLSGG+LD WE+IRLRPGGKKKY LKH++WASRELERF +NPGLLETSEGC+QI+ Sbjct 2 GARASVLSGGKLDTWERIRLRPGGKKKYALKHLIWASRELERFTLNPGLLETSEGCKQII 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQAAAD 120 GQLQPS+QTGSEE+RSLYNTVATLYCVH+RIE+KDTKEA++K+EEEQNKSKKK QQAAAD Sbjct 62 GQLQPSIQTGSEEIRSLYNTVATLYCVHERIEVKDTKEAVEKMEEEQNKSKKKTQQAAAD 121 Query 121 TGHSNQVSQNY 131 S+QVSQNY Sbjct 122 ---SSQVSQNY 129 >RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Spacer peptide 2; Short=SP2; AltName: Full=p1; Contains: RecName: Full=p6-gag [HIV-1 M:G_SE6165] Sequence ID: O89939.3 Length: 495 Range 1: 2 to 132 Score:218 bits(556), Expect:3e-69, Method:Compositional matrix adjust., Identities:101/131(77%), Positives:121/131(92%), Gaps:0/131(0%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GARASVL+GG+LD WEKIRLRPGG+K YK+KH+VWASRELERFA+NP LLET+EGC+QI+ Sbjct 2 GARASVLTGGKLDAWEKIRLRPGGRKSYKIKHLVWASRELERFALNPDLLETAEGCQQIM 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQAAAD 120 QLQPSLQTG+EE++SLYN VATLYCVHQRIE+KDTKEAL+++E+ Q KS++K QQAA D Sbjct 62 RQLQPSLQTGTEEIKSLYNAVATLYCVHQRIEVKDTKEALEEVEKIQKKSQEKIQQAAMD 121 Query 121 TGHSNQVSQNY 131 G+SNQVSQNY Sbjct 122 KGNSNQVSQNY 132 >RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Spacer peptide 2; Short=SP2; AltName: Full=p1; Contains: RecName: Full=p6-gag [HIV-1 M:F2_MP257C] Sequence ID: Q9QBZ2.2 Length: 496 Range 1: 2 to 132 Score:218 bits(554), Expect:6e-69, Method:Compositional matrix adjust., Identities:101/131(77%), Positives:120/131(91%), Gaps:0/131(0%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GARASVLSGG+LD WEKIRLRPGGKKKY+LKHIVWASREL+RFA+NPGLLET+EGC++I+ Sbjct 2 GARASVLSGGKLDAWEKIRLRPGGKKKYRLKHIVWASRELKRFALNPGLLETTEGCKKII 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQAAAD 120 GQLQPSLQTGSEEL+SL+NT+ LY VHQ+IE++DTKEALDK++EEQ+K ++K QQA AD Sbjct 62 GQLQPSLQTGSEELKSLFNTIVVLYYVHQKIEVRDTKEALDKLQEEQDKHQQKTQQATAD 121 Query 121 TGHSNQVSQNY 131 G S VSQNY Sbjct 122 KGVSKGVSQNY 132 >RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Spacer peptide 2; Short=SP2; AltName: Full=p1; Contains: RecName: Full=p6-gag [Human immunodeficiency virus type 1 (STRAIN UGANDAN / ISOLATE U455)] Sequence ID: P24736.3 Length: 493 Range 1: 2 to 128 Score:217 bits(552), Expect:1e-68, Method:Compositional matrix adjust., Identities:103/131(79%), Positives:119/131(90%), Gaps:4/131(3%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GARASVLSG +LD WEKIRLRPGG KKY+LKH+VWASRELE+F +NPGLLET+EGC+QIL Sbjct 2 GARASVLSGKKLDSWEKIRLRPGGNKKYRLKHLVWASRELEKFTLNPGLLETAEGCQQIL 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQAAAD 120 GQLQP+LQTG+EELRSLYNTVA LYCVHQRI++KDTKEAL+KIEE QNK+K++ QQAAA+ Sbjct 62 GQLQPALQTGTEELRSLYNTVAVLYCVHQRIDVKDTKEALNKIEEMQNKNKQRTQQAAAN 121 Query 121 TGHSNQVSQNY 131 TG SQNY Sbjct 122 TGS----SQNY 128 >RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Spacer peptide 2; Short=SP2; AltName: Full=p1; Contains: RecName: Full=p6-gag [HIV-1 M:J_SE9173] Sequence ID: Q9WC62.3 Length: 497 Range 1: 2 to 132 Score:216 bits(551), Expect:2e-68, Method:Compositional matrix adjust., Identities:100/131(76%), Positives:122/131(93%), Gaps:0/131(0%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GARAS+LSGG+LD WEKIRLRPGGKK+Y++KH+VWASREL+RFA+NPGLLE+++GC+QIL Sbjct 2 GARASILSGGKLDDWEKIRLRPGGKKQYRIKHLVWASRELDRFALNPGLLESAKGCQQIL 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQAAAD 120 QLQP+LQTG+EE++SLYNTVATLYCVHQRIEIKDTKEALDKIEE QNK+K++ Q+A D Sbjct 62 VQLQPALQTGTEEIKSLYNTVATLYCVHQRIEIKDTKEALDKIEEIQNKNKQQTQKAETD 121 Query 121 TGHSNQVSQNY 131 ++QVSQNY Sbjct 122 KKDNSQVSQNY 132 >RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Spacer peptide 2; Short=SP2; AltName: Full=p1; Contains: RecName: Full=p6-gag [Human immunodeficiency virus type 1 (Z2/CDC-Z34 ISOLATE)] Sequence ID: P12495.3 Length: 501 Range 1: 2 to 133 Score:216 bits(551), Expect:2e-68, Method:Compositional matrix adjust., Identities:110/132(83%), Positives:128/132(96%), Gaps:1/132(0%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GARASVLSGG+LD WEKIRLRPGGKKKY+LKH+VWASRELERFA+NPGLLETS+GC+QI+ Sbjct 2 GARASVLSGGKLDAWEKIRLRPGGKKKYRLKHLVWASRELERFALNPGLLETSDGCKQII 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKK-KAQQAAA 119 GQLQP+++TGSEELRSL+NTVATLYCVH+RIE+KDTKEAL+K+EEEQNKSK KAQQAAA Sbjct 62 GQLQPAIRTGSEELRSLFNTVATLYCVHERIEVKDTKEALEKMEEEQNKSKNKKAQQAAA 121 Query 120 DTGHSNQVSQNY 131 D G+++QVSQNY Sbjct 122 DAGNNSQVSQNY 133 >RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Spacer peptide 2; Short=SP2; AltName: Full=p1; Contains: RecName: Full=p6-gag [HIV-1 M:H_90CF056] Sequence ID: O93182.3 Length: 500 Range 1: 2 to 132 Score:216 bits(550), Expect:3e-68, Method:Compositional matrix adjust., Identities:100/131(76%), Positives:119/131(90%), Gaps:0/131(0%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GARASVLSGG+LD WEKIRLRPGGKKKY+LKH+VWASRELERFA+NPGLLET EGC QI+ Sbjct 2 GARASVLSGGKLDAWEKIRLRPGGKKKYRLKHLVWASRELERFALNPGLLETPEGCLQII 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQAAAD 120 Q+QP+++TG+EEL+SL+N VA LYCVH++I++KDTKEALDKIEE QNKS++K QQAAAD Sbjct 62 EQIQPAIKTGTEELKSLFNLVAVLYCVHRKIDVKDTKEALDKIEEIQNKSQQKTQQAAAD 121 Query 121 TGHSNQVSQNY 131 N+VSQNY Sbjct 122 KEKDNKVSQNY 132 >RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Spacer peptide 2; Short=SP2; AltName: Full=p1; Contains: RecName: Full=p6-gag [HIV-1 M:J_SE9280] Sequence ID: Q9WC53.3 Length: 497 Range 1: 2 to 132 Score:214 bits(545), Expect:1e-67, Method:Compositional matrix adjust., Identities:99/131(76%), Positives:122/131(93%), Gaps:0/131(0%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GARAS+LSGG+LD WEKIRLRPGGKKKY++KH+VWASREL+RFA+NPGLLE+++GC+QIL Sbjct 2 GARASILSGGKLDDWEKIRLRPGGKKKYRIKHLVWASRELDRFALNPGLLESAKGCQQIL 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQAAAD 120 QLQP+LQTG++E++SLYNTVATLYCVHQRIEIKDT EAL+KIEE QNK+K++AQ+A D Sbjct 62 VQLQPALQTGTQEIKSLYNTVATLYCVHQRIEIKDTMEALEKIEEIQNKNKQQAQKAETD 121 Query 121 TGHSNQVSQNY 131 ++QVSQNY Sbjct 122 KKDNSQVSQNY 132 >RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Spacer peptide 2; Short=SP2; AltName: Full=p1; Contains: RecName: Full=p6-gag [HIV-1 M:K_97ZR-EQTB11] Sequence ID: Q9QC00.2 Length: 495 Range 1: 2 to 128 Score:212 bits(540), Expect:8e-67, Method:Compositional matrix adjust., Identities:102/131(78%), Positives:118/131(90%), Gaps:4/131(3%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GARASVLSGG+LD+WEKI+LRPGGKKKY+LKH+VWASRELERFA+NP LLET EGCRQI+ Sbjct 2 GARASVLSGGKLDKWEKIQLRPGGKKKYRLKHLVWASRELERFALNPNLLETVEGCRQII 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQAAAD 120 QLQPSLQTGSEELRSL+NTVATLY VHQ I+++DTKEALDK+EEEQN++++K QQ AD Sbjct 62 RQLQPSLQTGSEELRSLFNTVATLYWVHQSIQVRDTKEALDKLEEEQNRTQQKTQQGKAD 121 Query 121 TGHSNQVSQNY 131 G VSQNY Sbjct 122 KG----VSQNY 128 >RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Spacer peptide 2; Short=SP2; AltName: Full=p1; Contains: RecName: Full=p6-gag [HIV-1 M:H_VI991] Sequence ID: Q9Q721.3 Length: 498 Range 1: 2 to 134 Score:211 bits(537), Expect:2e-66, Method:Compositional matrix adjust., Identities:99/133(74%), Positives:121/133(90%), Gaps:2/133(1%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GARASVLSGG+LD WEKIRLRPGG+KKY+LKH+VWASRELERFA+NP LLET++GC+QIL Sbjct 2 GARASVLSGGKLDAWEKIRLRPGGRKKYRLKHLVWASRELERFALNPDLLETADGCQQIL 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQ--AA 118 GQLQP+L+TG+E+L+SLYNT+A LYCVHQRI++KDTKEAL KIEE QNK+K++ QQ AA Sbjct 62 GQLQPALKTGTEDLQSLYNTIAVLYCVHQRIDVKDTKEALGKIEEIQNKNKQRTQQAPAA 121 Query 119 ADTGHSNQVSQNY 131 AD +++SQNY Sbjct 122 ADKEKDSKISQNY 134 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:K_96CM-MP535] Sequence ID: Q9QBY3.3 Length: 1430 Range 1: 2 to 128 Score:220 bits(560), Expect:2e-66, Method:Compositional matrix adjust., Identities:105/131(80%), Positives:120/131(91%), Gaps:4/131(3%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GARASVLSGG+LD WEKIRLRPGGKKKYKLKH+VWASRELERFA+NPGLLET+EGCRQI+ Sbjct 2 GARASVLSGGKLDAWEKIRLRPGGKKKYKLKHLVWASRELERFALNPGLLETTEGCRQII 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQAAAD 120 Q+QPS+QTGSEE++SLYNT+A LY VHQ+IE+KDTKEALDK+EEEQNKS++K QQ AAD Sbjct 62 TQIQPSIQTGSEEIKSLYNTIAVLYFVHQKIEVKDTKEALDKLEEEQNKSQRKTQQEAAD 121 Query 121 TGHSNQVSQNY 131 G VSQNY Sbjct 122 KG----VSQNY 128 >RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Spacer peptide 2; Short=SP2; AltName: Full=p1; Contains: RecName: Full=p6-gag [HIV-1 M:F1_VI850] Sequence ID: Q9QSR4.3 Length: 491 Range 1: 2 to 128 Score:209 bits(532), Expect:1e-65, Method:Compositional matrix adjust., Identities:100/131(76%), Positives:118/131(90%), Gaps:4/131(3%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GARAS+LSGG+LD WEKI+LRPGGKK+YK+KH++WASRELERFA++PGLLETSEGC++I+ Sbjct 2 GARASILSGGKLDEWEKIQLRPGGKKRYKMKHLIWASRELERFALDPGLLETSEGCQKII 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQAAAD 120 QLQPSLQTGSEEL+SL+NTVA LY VHQR + DTKEALDK+EEEQNKS++K QQAAAD Sbjct 62 RQLQPSLQTGSEELKSLFNTVAVLYYVHQRAGVTDTKEALDKLEEEQNKSQQKTQQAAAD 121 Query 121 TGHSNQVSQNY 131 G VSQNY Sbjct 122 KG----VSQNY 128 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:G_SE6165] Sequence ID: O89940.3 Length: 1433 Range 1: 2 to 132 Score:218 bits(554), Expect:1e-65, Method:Compositional matrix adjust., Identities:101/131(77%), Positives:121/131(92%), Gaps:0/131(0%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GARASVL+GG+LD WEKIRLRPGG+K YK+KH+VWASRELERFA+NP LLET+EGC+QI+ Sbjct 2 GARASVLTGGKLDAWEKIRLRPGGRKSYKIKHLVWASRELERFALNPDLLETAEGCQQIM 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQAAAD 120 QLQPSLQTG+EE++SLYN VATLYCVHQRIE+KDTKEAL+++E+ Q KS++K QQAA D Sbjct 62 RQLQPSLQTGTEEIKSLYNAVATLYCVHQRIEVKDTKEALEEVEKIQKKSQEKIQQAAMD 121 Query 121 TGHSNQVSQNY 131 G+SNQVSQNY Sbjct 122 KGNSNQVSQNY 132 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:F2_MP257C] Sequence ID: Q9QBZ1.3 Length: 1434 Range 1: 2 to 132 Score:217 bits(552), Expect:2e-65, Method:Compositional matrix adjust., Identities:101/131(77%), Positives:120/131(91%), Gaps:0/131(0%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GARASVLSGG+LD WEKIRLRPGGKKKY+LKHIVWASREL+RFA+NPGLLET+EGC++I+ Sbjct 2 GARASVLSGGKLDAWEKIRLRPGGKKKYRLKHIVWASRELKRFALNPGLLETTEGCKKII 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQAAAD 120 GQLQPSLQTGSEEL+SL+NT+ LY VHQ+IE++DTKEALDK++EEQ+K ++K QQA AD Sbjct 62 GQLQPSLQTGSEELKSLFNTIVVLYYVHQKIEVRDTKEALDKLQEEQDKHQQKTQQATAD 121 Query 121 TGHSNQVSQNY 131 G S VSQNY Sbjct 122 KGVSKGVSQNY 132 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:J_SE9173] Sequence ID: Q9WC63.3 Length: 1432 Range 1: 2 to 132 Score:216 bits(550), Expect:4e-65, Method:Compositional matrix adjust., Identities:100/131(76%), Positives:122/131(93%), Gaps:0/131(0%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GARAS+LSGG+LD WEKIRLRPGGKK+Y++KH+VWASREL+RFA+NPGLLE+++GC+QIL Sbjct 2 GARASILSGGKLDDWEKIRLRPGGKKQYRIKHLVWASRELDRFALNPGLLESAKGCQQIL 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQAAAD 120 QLQP+LQTG+EE++SLYNTVATLYCVHQRIEIKDTKEALDKIEE QNK+K++ Q+A D Sbjct 62 VQLQPALQTGTEEIKSLYNTVATLYCVHQRIEIKDTKEALDKIEEIQNKNKQQTQKAETD 121 Query 121 TGHSNQVSQNY 131 ++QVSQNY Sbjct 122 KKDNSQVSQNY 132 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 (STRAIN UGANDAN / ISOLATE U455)] Sequence ID: P24740.3 Length: 1428 Range 1: 2 to 128 Score:216 bits(549), Expect:6e-65, Method:Compositional matrix adjust., Identities:103/131(79%), Positives:119/131(90%), Gaps:4/131(3%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GARASVLSG +LD WEKIRLRPGG KKY+LKH+VWASRELE+F +NPGLLET+EGC+QIL Sbjct 2 GARASVLSGKKLDSWEKIRLRPGGNKKYRLKHLVWASRELEKFTLNPGLLETAEGCQQIL 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQAAAD 120 GQLQP+LQTG+EELRSLYNTVA LYCVHQRI++KDTKEAL+KIEE QNK+K++ QQAAA+ Sbjct 62 GQLQPALQTGTEELRSLYNTVAVLYCVHQRIDVKDTKEALNKIEEMQNKNKQRTQQAAAN 121 Query 121 TGHSNQVSQNY 131 TG SQNY Sbjct 122 TGS----SQNY 128 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 (Z2/CDC-Z34 ISOLATE)] Sequence ID: P12499.3 Length: 1436 Range 1: 2 to 133 Score:216 bits(549), Expect:7e-65, Method:Compositional matrix adjust., Identities:110/132(83%), Positives:128/132(96%), Gaps:1/132(0%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GARASVLSGG+LD WEKIRLRPGGKKKY+LKH+VWASRELERFA+NPGLLETS+GC+QI+ Sbjct 2 GARASVLSGGKLDAWEKIRLRPGGKKKYRLKHLVWASRELERFALNPGLLETSDGCKQII 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKK-KAQQAAA 119 GQLQP+++TGSEELRSL+NTVATLYCVH+RIE+KDTKEAL+K+EEEQNKSK KAQQAAA Sbjct 62 GQLQPAIRTGSEELRSLFNTVATLYCVHERIEVKDTKEALEKMEEEQNKSKNKKAQQAAA 121 Query 120 DTGHSNQVSQNY 131 D G+++QVSQNY Sbjct 122 DAGNNSQVSQNY 133 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:H_90CF056] Sequence ID: O93215.4 Length: 1435 Range 1: 2 to 132 Score:215 bits(548), Expect:9e-65, Method:Compositional matrix adjust., Identities:100/131(76%), Positives:119/131(90%), Gaps:0/131(0%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GARASVLSGG+LD WEKIRLRPGGKKKY+LKH+VWASRELERFA+NPGLLET EGC QI+ Sbjct 2 GARASVLSGGKLDAWEKIRLRPGGKKKYRLKHLVWASRELERFALNPGLLETPEGCLQII 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQAAAD 120 Q+QP+++TG+EEL+SL+N VA LYCVH++I++KDTKEALDKIEE QNKS++K QQAAAD Sbjct 62 EQIQPAIKTGTEELKSLFNLVAVLYCVHRKIDVKDTKEALDKIEEIQNKSQQKTQQAAAD 121 Query 121 TGHSNQVSQNY 131 N+VSQNY Sbjct 122 KEKDNKVSQNY 132 >RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Spacer peptide 2; Short=SP2; AltName: Full=p1; Contains: RecName: Full=p6-gag [Human immunodeficiency virus type 1 (MAL ISOLATE)] Sequence ID: P04594.3 Length: 505 Range 1: 2 to 138 Score:207 bits(526), Expect:1e-64, Method:Compositional matrix adjust., Identities:106/137(77%), Positives:122/137(89%), Gaps:6/137(4%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GARASVLSGG+LD WEKIRLRPGGKKKY+LKH+VWASRELERFA+NPGLLET EGC+QI+ Sbjct 2 GARASVLSGGKLDAWEKIRLRPGGKKKYRLKHLVWASRELERFALNPGLLETGEGCQQIM 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKA------ 114 QLQ +L+TGSEE++SLYNTVATLYCVHQRI++KDTKEALDKIEE QNKS++K Sbjct 62 EQLQSTLKTGSEEIKSLYNTVATLYCVHQRIDVKDTKEALDKIEEIQNKSRQKTQQAAAA 121 Query 115 QQAAADTGHSNQVSQNY 131 QQAAA T +S+ VSQNY Sbjct 122 QQAAAATKNSSSVSQNY 138 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:J_SE9280] Sequence ID: Q9WC54.3 Length: 1432 Range 1: 2 to 132 Score:214 bits(544), Expect:3e-64, Method:Compositional matrix adjust., Identities:99/131(76%), Positives:122/131(93%), Gaps:0/131(0%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GARAS+LSGG+LD WEKIRLRPGGKKKY++KH+VWASREL+RFA+NPGLLE+++GC+QIL Sbjct 2 GARASILSGGKLDDWEKIRLRPGGKKKYRIKHLVWASRELDRFALNPGLLESAKGCQQIL 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQAAAD 120 QLQP+LQTG++E++SLYNTVATLYCVHQRIEIKDT EAL+KIEE QNK+K++AQ+A D Sbjct 62 VQLQPALQTGTQEIKSLYNTVATLYCVHQRIEIKDTMEALEKIEEIQNKNKQQAQKAETD 121 Query 121 TGHSNQVSQNY 131 ++QVSQNY Sbjct 122 KKDNSQVSQNY 132 >RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Spacer peptide 2; Short=SP2; AltName: Full=p1; Contains: RecName: Full=p6-gag [HIV-1 M:F2_MP255C] Sequence ID: Q9QBZ6.2 Length: 492 Range 1: 2 to 128 Score:203 bits(517), Expect:2e-63, Method:Compositional matrix adjust., Identities:97/131(74%), Positives:117/131(89%), Gaps:4/131(3%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GARASVLSGG+LD WEKIRL+PGGKK+Y+LKH+VWASRELERFA+NP LLET+EGC++I+ Sbjct 2 GARASVLSGGKLDAWEKIRLKPGGKKRYRLKHLVWASRELERFALNPSLLETTEGCKKII 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQAAAD 120 GQLQ SLQTGSEEL+SLYN V LY VHQRI+++DTKEALDK++EEQ+KS++K QQ AAD Sbjct 62 GQLQSSLQTGSEELKSLYNAVVVLYYVHQRIDVRDTKEALDKLQEEQDKSQQKEQQKAAD 121 Query 121 TGHSNQVSQNY 131 +VSQNY Sbjct 122 ----KEVSQNY 128 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:K_97ZR-EQTB11] Sequence ID: Q9QBZ9.2 Length: 1429 Range 1: 2 to 128 Score:211 bits(538), Expect:2e-63, Method:Compositional matrix adjust., Identities:102/131(78%), Positives:118/131(90%), Gaps:4/131(3%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GARASVLSGG+LD+WEKI+LRPGGKKKY+LKH+VWASRELERFA+NP LLET EGCRQI+ Sbjct 2 GARASVLSGGKLDKWEKIQLRPGGKKKYRLKHLVWASRELERFALNPNLLETVEGCRQII 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQAAAD 120 QLQPSLQTGSEELRSL+NTVATLY VHQ I+++DTKEALDK+EEEQN++++K QQ AD Sbjct 62 RQLQPSLQTGSEELRSLFNTVATLYWVHQSIQVRDTKEALDKLEEEQNRTQQKTQQGKAD 121 Query 121 TGHSNQVSQNY 131 G VSQNY Sbjct 122 KG----VSQNY 128 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:H_VI991] Sequence ID: Q9Q720.3 Length: 1436 Range 1: 2 to 134 Score:211 bits(536), Expect:4e-63, Method:Compositional matrix adjust., Identities:99/133(74%), Positives:121/133(90%), Gaps:2/133(1%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GARASVLSGG+LD WEKIRLRPGG+KKY+LKH+VWASRELERFA+NP LLET++GC+QIL Sbjct 2 GARASVLSGGKLDAWEKIRLRPGGRKKYRLKHLVWASRELERFALNPDLLETADGCQQIL 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQ--AA 118 GQLQP+L+TG+E+L+SLYNT+A LYCVHQRI++KDTKEAL KIEE QNK+K++ QQ AA Sbjct 62 GQLQPALKTGTEDLQSLYNTIAVLYCVHQRIDVKDTKEALGKIEEIQNKNKQRTQQAPAA 121 Query 119 ADTGHSNQVSQNY 131 AD +++SQNY Sbjct 122 ADKEKDSKISQNY 134 >RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Spacer peptide 2; Short=SP2; AltName: Full=p1; Contains: RecName: Full=p6-gag [HIV-1 M:C_92BR025] Sequence ID: O12157.3 Length: 496 Range 1: 2 to 130 Score:202 bits(515), Expect:4e-63, Method:Compositional matrix adjust., Identities:96/132(73%), Positives:120/132(90%), Gaps:4/132(3%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GARAS+L GG+LD WE+I+L+PGGKK Y +KH+VWASRELERFA++PGLLETSEGC+QI+ Sbjct 2 GARASILRGGKLDAWERIKLKPGGKKHYMMKHLVWASRELERFALDPGLLETSEGCKQIM 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQA-AA 119 QLQP+LQTG++EL SL+NTVATLYCVH++I+++DTKEALDKI+EEQNKS++K QQA AA Sbjct 62 KQLQPALQTGTKELISLHNTVATLYCVHEKIDVRDTKEALDKIKEEQNKSQQKTQQAEAA 121 Query 120 DTGHSNQVSQNY 131 D G +VSQNY Sbjct 122 DKG---KVSQNY 130 >RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Spacer peptide 2; Short=SP2; AltName: Full=p1; Contains: RecName: Full=p6-gag [HIV-1 M:C_ETH2220] Sequence ID: Q75001.3 Length: 504 Range 1: 2 to 130 Score:201 bits(512), Expect:1e-62, Method:Compositional matrix adjust., Identities:98/132(74%), Positives:116/132(87%), Gaps:4/132(3%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GARAS+L G +LD WEKI+LRPGGKK Y LKH+VWA+RELE+FA+NP LL+TS GC+QI+ Sbjct 2 GARASILRGEKLDAWEKIKLRPGGKKHYMLKHLVWANRELEKFALNPDLLDTSAGCKQII 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQA-AA 119 QLQP+LQTG+EEL+SL+NTVATLYCVHQ+IEIKDTKEALDKIEEEQN+S++K QQA AA Sbjct 62 KQLQPALQTGTEELKSLFNTVATLYCVHQKIEIKDTKEALDKIEEEQNESQQKTQQAGAA 121 Query 120 DTGHSNQVSQNY 131 D G SQNY Sbjct 122 DRGKD---SQNY 130 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:F1_VI850] Sequence ID: Q9QSR3.3 Length: 1430 Range 1: 2 to 128 Score:208 bits(530), Expect:3e-62, Method:Compositional matrix adjust., Identities:100/131(76%), Positives:118/131(90%), Gaps:4/131(3%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GARAS+LSGG+LD WEKI+LRPGGKK+YK+KH++WASRELERFA++PGLLETSEGC++I+ Sbjct 2 GARASILSGGKLDEWEKIQLRPGGKKRYKMKHLIWASRELERFALDPGLLETSEGCQKII 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQAAAD 120 QLQPSLQTGSEEL+SL+NTVA LY VHQR + DTKEALDK+EEEQNKS++K QQAAAD Sbjct 62 RQLQPSLQTGSEELKSLFNTVAVLYYVHQRAGVTDTKEALDKLEEEQNKSQQKTQQAAAD 121 Query 121 TGHSNQVSQNY 131 G VSQNY Sbjct 122 KG----VSQNY 128 >RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Spacer peptide 2; Short=SP2; AltName: Full=p1; Contains: RecName: Full=p6-gag [HIV-1 M:G_92NG083] Sequence ID: P0C1K7.2 Length: 497 Range 1: 2 to 131 Score:199 bits(506), Expect:1e-61, Method:Compositional matrix adjust., Identities:97/131(74%), Positives:116/131(88%), Gaps:1/131(0%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GARASVLSGG+LD WEKIRLRPGG+KKYKLKHIVWASREL RFA+N LLET+EGC QI+ Sbjct 2 GARASVLSGGKLDSWEKIRLRPGGRKKYKLKHIVWASRELGRFALNRDLLETAEGCVQIM 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQAAAD 120 QLQP+L TG+EELRSL+NTVATLYCVHQ+IE+KDTKEA +++E+ Q S+++ QQAA + Sbjct 62 KQLQPAL-TGTEELRSLFNTVATLYCVHQKIEVKDTKEAPEEVEKIQKNSQQEIQQAAKN 120 Query 121 TGHSNQVSQNY 131 G+SN VSQNY Sbjct 121 EGNSNPVSQNY 131 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 (MAL ISOLATE)] Sequence ID: P04588.3 Length: 1440 Range 1: 2 to 138 Score:206 bits(524), Expect:1e-61, Method:Compositional matrix adjust., Identities:106/137(77%), Positives:122/137(89%), Gaps:6/137(4%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GARASVLSGG+LD WEKIRLRPGGKKKY+LKH+VWASRELERFA+NPGLLET EGC+QI+ Sbjct 2 GARASVLSGGKLDAWEKIRLRPGGKKKYRLKHLVWASRELERFALNPGLLETGEGCQQIM 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKA------ 114 QLQ +L+TGSEE++SLYNTVATLYCVHQRI++KDTKEALDKIEE QNKS++K Sbjct 62 EQLQSTLKTGSEEIKSLYNTVATLYCVHQRIDVKDTKEALDKIEEIQNKSRQKTQQAAAA 121 Query 115 QQAAADTGHSNQVSQNY 131 QQAAA T +S+ VSQNY Sbjct 122 QQAAAATKNSSSVSQNY 138 >RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Spacer peptide 2; Short=SP2; AltName: Full=p1; Contains: RecName: Full=p6-gag [HIV-1 M:F1_93BR020] Sequence ID: O89291.3 Length: 492 Range 1: 2 to 128 Score:198 bits(503), Expect:3e-61, Method:Compositional matrix adjust., Identities:103/131(79%), Positives:120/131(91%), Gaps:4/131(3%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GARASVLSGG+LD WEKIRLRPGGKKKY+LKH+VWASRELERFA++PGLLETSEGCR+I+ Sbjct 2 GARASVLSGGKLDAWEKIRLRPGGKKKYRLKHLVWASRELERFALDPGLLETSEGCRKII 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQAAAD 120 GQLQPSLQTGSEEL+SLYNT+A LY VHQ++E+KDTKEAL+K+EEEQNK ++K QQA A+ Sbjct 62 GQLQPSLQTGSEELKSLYNTIAVLYYVHQKVEVKDTKEALEKLEEEQNKGRQKTQQATAE 121 Query 121 TGHSNQVSQNY 131 G VSQNY Sbjct 122 KG----VSQNY 128 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:F2_MP255C] Sequence ID: Q9QBZ5.3 Length: 1430 Range 1: 2 to 128 Score:202 bits(515), Expect:2e-60, Method:Compositional matrix adjust., Identities:97/131(74%), Positives:117/131(89%), Gaps:4/131(3%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GARASVLSGG+LD WEKIRL+PGGKK+Y+LKH+VWASRELERFA+NP LLET+EGC++I+ Sbjct 2 GARASVLSGGKLDAWEKIRLKPGGKKRYRLKHLVWASRELERFALNPSLLETTEGCKKII 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQAAAD 120 GQLQ SLQTGSEEL+SLYN V LY VHQRI+++DTKEALDK++EEQ+KS++K QQ AAD Sbjct 62 GQLQSSLQTGSEELKSLYNAVVVLYYVHQRIDVRDTKEALDKLQEEQDKSQQKEQQKAAD 121 Query 121 TGHSNQVSQNY 131 +VSQNY Sbjct 122 ----KEVSQNY 128 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:C_92BR025] Sequence ID: O12158.2 Length: 1431 Range 1: 2 to 130 Score:201 bits(512), Expect:6e-60, Method:Compositional matrix adjust., Identities:96/132(73%), Positives:120/132(90%), Gaps:4/132(3%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GARAS+L GG+LD WE+I+L+PGGKK Y +KH+VWASRELERFA++PGLLETSEGC+QI+ Sbjct 2 GARASILRGGKLDAWERIKLKPGGKKHYMMKHLVWASRELERFALDPGLLETSEGCKQIM 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQA-AA 119 QLQP+LQTG++EL SL+NTVATLYCVH++I+++DTKEALDKI+EEQNKS++K QQA AA Sbjct 62 KQLQPALQTGTKELISLHNTVATLYCVHEKIDVRDTKEALDKIKEEQNKSQQKTQQAEAA 121 Query 120 DTGHSNQVSQNY 131 D G +VSQNY Sbjct 122 DKG---KVSQNY 130 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:C_ETH2220] Sequence ID: Q75002.3 Length: 1439 Range 1: 2 to 130 Score:200 bits(509), Expect:2e-59, Method:Compositional matrix adjust., Identities:98/132(74%), Positives:116/132(87%), Gaps:4/132(3%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GARAS+L G +LD WEKI+LRPGGKK Y LKH+VWA+RELE+FA+NP LL+TS GC+QI+ Sbjct 2 GARASILRGEKLDAWEKIKLRPGGKKHYMLKHLVWANRELEKFALNPDLLDTSAGCKQII 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQA-AA 119 QLQP+LQTG+EEL+SL+NTVATLYCVHQ+IEIKDTKEALDKIEEEQN+S++K QQA AA Sbjct 62 KQLQPALQTGTEELKSLFNTVATLYCVHQKIEIKDTKEALDKIEEEQNESQQKTQQAGAA 121 Query 120 DTGHSNQVSQNY 131 D G SQNY Sbjct 122 DRGKD---SQNY 130 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:G_92NG083] Sequence ID: O41798.3 Length: 1435 Range 1: 2 to 131 Score:198 bits(504), Expect:8e-59, Method:Compositional matrix adjust., Identities:97/131(74%), Positives:116/131(88%), Gaps:1/131(0%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GARASVLSGG+LD WEKIRLRPGG+KKYKLKHIVWASREL RFA+N LLET+EGC QI+ Sbjct 2 GARASVLSGGKLDSWEKIRLRPGGRKKYKLKHIVWASRELGRFALNRDLLETAEGCVQIM 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQAAAD 120 QLQP+L TG+EELRSL+NTVATLYCVHQ+IE+KDTKEA +++E+ Q S+++ QQAA + Sbjct 62 KQLQPAL-TGTEELRSLFNTVATLYCVHQKIEVKDTKEAPEEVEKIQKNSQQEIQQAAKN 120 Query 121 TGHSNQVSQNY 131 G+SN VSQNY Sbjct 121 EGNSNPVSQNY 131 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:F1_93BR020] Sequence ID: O89290.3 Length: 1430 Range 1: 2 to 128 Score:197 bits(501), Expect:2e-58, Method:Compositional matrix adjust., Identities:103/131(79%), Positives:120/131(91%), Gaps:4/131(3%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GARASVLSGG+LD WEKIRLRPGGKKKY+LKH+VWASRELERFA++PGLLETSEGCR+I+ Sbjct 2 GARASVLSGGKLDAWEKIRLRPGGKKKYRLKHLVWASRELERFALDPGLLETSEGCRKII 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQAAAD 120 GQLQPSLQTGSEEL+SLYNT+A LY VHQ++E+KDTKEAL+K+EEEQNK ++K QQA A+ Sbjct 62 GQLQPSLQTGSEELKSLYNTIAVLYYVHQKVEVKDTKEALEKLEEEQNKGRQKTQQATAE 121 Query 121 TGHSNQVSQNY 131 G VSQNY Sbjct 122 KG----VSQNY 128 >RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Contains: RecName: Full=p6-gag [SIVcpz MB66] Sequence ID: Q1A268.3 Length: 499 Range 1: 2 to 130 Score:186 bits(472), Expect:9e-57, Method:Compositional matrix adjust., Identities:86/131(66%), Positives:110/131(83%), Gaps:2/131(1%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GARASVL+GG+LDRWEKI LRPGGKKKY +KH+VWASRELERFA NP L+ET+EGC+Q+L Sbjct 2 GARASVLTGGKLDRWEKIYLRPGGKKKYMMKHLVWASRELERFACNPSLMETTEGCKQLL 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQAAAD 120 QL+P+L+TGSE LRSL+NT+ L+CVHQ I +KDTKEALD+++E Q K K++ A AD Sbjct 62 QQLEPALKTGSEGLRSLFNTIVVLWCVHQGIPVKDTKEALDQLQEAQQKGKQEVAAATAD 121 Query 121 TGHSNQVSQNY 131 ++ VS+N+ Sbjct 122 G--TSTVSRNF 130 >RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Spacer peptide 2; Short=SP2; AltName: Full=p1; Contains: RecName: Full=p6-gag [HIV-1 N_YBF30] Sequence ID: O91079.3 Length: 512 Range 1: 2 to 134 Score:186 bits(471), Expect:2e-56, Method:Compositional matrix adjust., Identities:85/133(64%), Positives:111/133(83%), Gaps:2/133(1%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GARASVL+GG+LD+WE I LRPGGKKKY++KH+VWASRELERFA NPGL++T++GC ++L Sbjct 2 GARASVLTGGKLDQWESIYLRPGGKKKYRMKHLVWASRELERFACNPGLMDTADGCAKLL 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEE--EQNKSKKKAQQAA 118 QL+P+L+TGSEELRSLYN +A LYCVH RI+I +T+EALDKI+E EQ+K + K +A Sbjct 62 NQLEPALKTGSEELRSLYNALAVLYCVHSRIQIHNTQEALDKIKEKQEQHKPEPKNPEAG 121 Query 119 ADTGHSNQVSQNY 131 A + +S+NY Sbjct 122 AAAATDSNISRNY 134 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [SIVcpz MB66] Sequence ID: Q1A267.4 Length: 1438 Range 1: 2 to 130 Score:186 bits(471), Expect:2e-54, Method:Compositional matrix adjust., Identities:86/131(66%), Positives:110/131(83%), Gaps:2/131(1%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GARASVL+GG+LDRWEKI LRPGGKKKY +KH+VWASRELERFA NP L+ET+EGC+Q+L Sbjct 2 GARASVLTGGKLDRWEKIYLRPGGKKKYMMKHLVWASRELERFACNPSLMETTEGCKQLL 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQAAAD 120 QL+P+L+TGSE LRSL+NT+ L+CVHQ I +KDTKEALD+++E Q K K++ A AD Sbjct 62 QQLEPALKTGSEGLRSLFNTIVVLWCVHQGIPVKDTKEALDQLQEAQQKGKQEVAAATAD 121 Query 121 TGHSNQVSQNY 131 ++ VS+N+ Sbjct 122 G--TSTVSRNF 130 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 N_YBF30] Sequence ID: O91080.3 Length: 1449 Range 1: 2 to 134 Score:184 bits(467), Expect:6e-54, Method:Compositional matrix adjust., Identities:85/133(64%), Positives:111/133(83%), Gaps:2/133(1%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GARASVL+GG+LD+WE I LRPGGKKKY++KH+VWASRELERFA NPGL++T++GC ++L Sbjct 2 GARASVLTGGKLDQWESIYLRPGGKKKYRMKHLVWASRELERFACNPGLMDTADGCAKLL 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEE--EQNKSKKKAQQAA 118 QL+P+L+TGSEELRSLYN +A LYCVH RI+I +T+EALDKI+E EQ+K + K +A Sbjct 62 NQLEPALKTGSEELRSLYNALAVLYCVHSRIQIHNTQEALDKIKEKQEQHKPEPKNPEAG 121 Query 119 ADTGHSNQVSQNY 131 A + +S+NY Sbjct 122 AAAATDSNISRNY 134 >RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Spacer peptide 2; Short=SP2; AltName: Full=p1; Contains: RecName: Full=p6-gag [HIV-1 N_YBF106] Sequence ID: Q9IDV8.3 Length: 511 Range 1: 2 to 134 Score:178 bits(451), Expect:1e-53, Method:Compositional matrix adjust., Identities:83/133(62%), Positives:107/133(80%), Gaps:2/133(1%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GARASVL+GG+LD+WE I LRPGGKKKY+LKH+VWASRELERFA NPGL++T+ GC Q++ Sbjct 2 GARASVLTGGKLDQWEAIYLRPGGKKKYRLKHLVWASRELERFACNPGLMDTANGCAQLI 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEE--EQNKSKKKAQQAA 118 QL+P+L+TGSE LRSL NT+A LYCVH I + +T+EALDKI+E EQ+KS+ K +A Sbjct 62 NQLEPALKTGSEGLRSLXNTLAVLYCVHSNIPVHNTQEALDKIKEKQEQHKSEPKKPEAG 121 Query 119 ADTGHSNQVSQNY 131 + +S+NY Sbjct 122 TAAAADSSISRNY 134 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 N_YBF106] Sequence ID: Q9IDV9.3 Length: 1449 Range 1: 2 to 134 Score:177 bits(449), Expect:2e-51, Method:Compositional matrix adjust., Identities:83/133(62%), Positives:107/133(80%), Gaps:2/133(1%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GARASVL+GG+LD+WE I LRPGGKKKY+LKH+VWASRELERFA NPGL++T+ GC Q++ Sbjct 2 GARASVLTGGKLDQWEAIYLRPGGKKKYRLKHLVWASRELERFACNPGLMDTANGCAQLI 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEE--EQNKSKKKAQQAA 118 QL+P+L+TGSE LRSL NT+A LYCVH I + +T+EALDKI+E EQ+KS+ K +A Sbjct 62 NQLEPALKTGSEGLRSLXNTLAVLYCVHSNIPVHNTQEALDKIKEKQEQHKSEPKKPEAG 121 Query 119 ADTGHSNQVSQNY 131 + +S+NY Sbjct 122 TAAAADSSISRNY 134 >RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Spacer peptide p1; Contains: RecName: Full=p6-gag [SIVcpz EK505] Sequence ID: Q1A250.3 Length: 511 Range 1: 2 to 135 Score:171 bits(433), Expect:7e-51, Method:Compositional matrix adjust., Identities:81/134(60%), Positives:108/134(80%), Gaps:3/134(2%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GARASVL+GG+LD+WEKI LRPGGKKKY +KH+VWASRELERFA NPGL++T+EGC Q+L Sbjct 2 GARASVLTGGKLDQWEKIYLRPGGKKKYMMKHLVWASRELERFACNPGLMDTAEGCAQLL 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKA---QQA 117 QL+P+L+TGSE LRSL+NT+A LYCVH I++++T+EAL+K+ E+ +K+ Q A Sbjct 62 RQLEPALKTGSEGLRSLFNTLAVLYCVHNNIKVQNTQEALEKLREKMKAEQKEPEPEQAA 121 Query 118 AADTGHSNQVSQNY 131 A + +S+NY Sbjct 122 GAAAAPESSISRNY 135 >RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Spacer peptide 2; Short=SP2; AltName: Full=p1; Contains: RecName: Full=p6-gag [HIV-1 O_MVP5180] Sequence ID: Q79665.3 Length: 498 Range 1: 2 to 130 Score:167 bits(422), Expect:2e-49, Method:Compositional matrix adjust., Identities:77/131(59%), Positives:105/131(80%), Gaps:2/131(1%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GARASVL+G +LD WE+IRLRPG KK Y+LKH+VWASRELER+A NPGLLET+EG Q+L Sbjct 2 GARASVLTGSKLDAWERIRLRPGSKKAYRLKHLVWASRELERYACNPGLLETAEGTEQLL 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQAAAD 120 QL+P+L+TGSE+L+SL+N +A L+CVH R +I+DT++A+ K++E + +K+ +AA + Sbjct 62 QQLEPALKTGSEDLKSLWNAIAVLWCVHNRFDIRDTQQAIQKLKEVM--ASRKSAEAAKE 119 Query 121 TGHSNQVSQNY 131 Q SQNY Sbjct 120 ETSPRQTSQNY 130 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [SIVcpz EK505] Sequence ID: Q1A249.3 Length: 1448 Range 1: 2 to 135 Score:169 bits(429), Expect:8e-49, Method:Compositional matrix adjust., Identities:81/134(60%), Positives:108/134(80%), Gaps:3/134(2%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GARASVL+GG+LD+WEKI LRPGGKKKY +KH+VWASRELERFA NPGL++T+EGC Q+L Sbjct 2 GARASVLTGGKLDQWEKIYLRPGGKKKYMMKHLVWASRELERFACNPGLMDTAEGCAQLL 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKA---QQA 117 QL+P+L+TGSE LRSL+NT+A LYCVH I++++T+EAL+K+ E+ +K+ Q A Sbjct 62 RQLEPALKTGSEGLRSLFNTLAVLYCVHNNIKVQNTQEALEKLREKMKAEQKEPEPEQAA 121 Query 118 AADTGHSNQVSQNY 131 A + +S+NY Sbjct 122 GAAAAPESSISRNY 135 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 O_MVP5180] Sequence ID: Q79666.3 Length: 1446 Range 1: 2 to 130 Score:166 bits(421), Expect:1e-47, Method:Compositional matrix adjust., Identities:77/131(59%), Positives:105/131(80%), Gaps:2/131(1%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GARASVL+G +LD WE+IRLRPG KK Y+LKH+VWASRELER+A NPGLLET+EG Q+L Sbjct 2 GARASVLTGSKLDAWERIRLRPGSKKAYRLKHLVWASRELERYACNPGLLETAEGTEQLL 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQAAAD 120 QL+P+L+TGSE+L+SL+N +A L+CVH R +I+DT++A+ K++E + +K+ +AA + Sbjct 62 QQLEPALKTGSEDLKSLWNAIAVLWCVHNRFDIRDTQQAIQKLKEVM--ASRKSAEAAKE 119 Query 121 TGHSNQVSQNY 131 Q SQNY Sbjct 120 ETSPRQTSQNY 130 >RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Spacer peptide p1; Contains: RecName: Full=p6-gag [SIVcpz GAB1] Sequence ID: P17282.1 Length: 508 Range 1: 2 to 140 Score:162 bits(409), Expect:2e-47, Method:Compositional matrix adjust., Identities:77/139(55%), Positives:110/139(79%), Gaps:8/139(5%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GARASVL+GG+LDRWEK+RLRPGG+K+Y +KH+VWASRELERFA +PGL+E+ EGC ++L Sbjct 2 GARASVLTGGKLDRWEKVRLRPGGRKRYMMKHLVWASRELERFACDPGLMESKEGCTKLL 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIE----EEQNK--SKKKA 114 QL+P+L+TGSE LRSL+NT+A L+C+H I ++DT++AL++++ E+Q+K S + Sbjct 62 QQLEPALKTGSEGLRSLFNTLAVLWCIHSDITVEDTQKALEQLKRHHGEQQSKTESNSGS 121 Query 115 QQAAADTGHSNQ--VSQNY 131 ++ A G S +S NY Sbjct 122 REGGASQGASASAGISGNY 140 >RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Spacer peptide 2; Short=SP2; AltName: Full=p1; Contains: RecName: Full=p6-gag [HIV-1 O_ANT70] Sequence ID: Q77372.3 Length: 498 Range 1: 2 to 130 Score:152 bits(384), Expect:7e-44, Method:Compositional matrix adjust., Identities:75/131(57%), Positives:100/131(76%), Gaps:2/131(1%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GA ASVL+G +LD WE+IRL+PG KKKY+LKH+VWASRELERFA NP LLET+EG ++L Sbjct 2 GASASVLTGSKLDAWEQIRLKPGSKKKYRLKHLVWASRELERFACNPELLETAEGNEKLL 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQAAAD 120 QL+P+L+TGS+ L+SL+N + L+CVH R +I DT++A+ K++E S+K A A D Sbjct 62 QQLEPALKTGSDSLQSLWNAIVVLWCVHNRYKIGDTQQAIQKLKEVMG-SRKSADAAKED 120 Query 121 TGHSNQVSQNY 131 T + Q QNY Sbjct 121 TS-ARQAGQNY 130 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 O_ANT70] Sequence ID: Q77373.3 Length: 1435 Range 1: 2 to 130 Score:152 bits(384), Expect:1e-42, Method:Compositional matrix adjust., Identities:75/131(57%), Positives:100/131(76%), Gaps:2/131(1%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GA ASVL+G +LD WE+IRL+PG KKKY+LKH+VWASRELERFA NP LLET+EG ++L Sbjct 2 GASASVLTGSKLDAWEQIRLKPGSKKKYRLKHLVWASRELERFACNPELLETAEGNEKLL 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQAAAD 120 QL+P+L+TGS+ L+SL+N + L+CVH R +I DT++A+ K++E S+K A A D Sbjct 62 QQLEPALKTGSDSLQSLWNAIVVLWCVHNRYKIGDTQQAIQKLKEVMG-SRKSADAAKED 120 Query 121 TGHSNQVSQNY 131 T + Q QNY Sbjct 121 TS-ARQAGQNY 130 >RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Spacer peptide p1; Contains: RecName: Full=p6-gag [SIVcpz TAN1] Sequence ID: Q8AII2.3 Length: 524 Range 1: 2 to 105 Score:131 bits(330), Expect:7e-36, Method:Compositional matrix adjust., Identities:59/104(57%), Positives:79/104(75%), Gaps:0/104(0%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GARASVL G +LD WE IRL+ G+KKY +KH+VWA EL+RFA+NPGL+E EGC +I+ Sbjct 2 GARASVLRGDKLDTWESIRLKSRGRKKYLIKHLVWAGSELQRFAMNPGLMENVEGCWKII 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIE 104 QLQPS+ GS E+ SL+NT+ LYCVH ++DT+EA+ ++ Sbjct 62 LQLQPSVDIGSPEIISLFNTICVLYCVHAGERVQDTEEAVKIVK 105 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [SIVcpz TAN1] Sequence ID: Q8AII1.4 Length: 1462 Range 1: 2 to 101 Score:131 bits(329), Expect:3e-35, Method:Compositional matrix adjust., Identities:59/100(59%), Positives:77/100(77%), Gaps:0/100(0%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GARASVL G +LD WE IRL+ G+KKY +KH+VWA EL+RFA+NPGL+E EGC +I+ Sbjct 2 GARASVLRGDKLDTWESIRLKSRGRKKYLIKHLVWAGSELQRFAMNPGLMENVEGCWKII 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEAL 100 QLQPS+ GS E+ SL+NT+ LYCVH ++DT+EA+ Sbjct 62 LQLQPSVDIGSPEIISLFNTICVLYCVHAGERVQDTEEAV 101 >RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Spacer peptide 2; Short=SP2; AltName: Full=p1; Contains: RecName: Full=p6-gag [Human immunodeficiency virus type 2 (ISOLATE ST)] Sequence ID: P20874.3 Length: 521 Range 1: 2 to 105 Score:126 bits(317), Expect:5e-34, Method:Compositional matrix adjust., Identities:60/104(58%), Positives:78/104(75%), Gaps:0/104(0%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GAR SVL G + D EKIRLRPGGKKKY+LKHIVWA+ EL+RF + LLE+ EGC++IL Sbjct 2 GARNSVLRGKKADELEKIRLRPGGKKKYRLKHIVWAANELDRFGLAESLLESKEGCQKIL 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIE 104 L P + TGSE L+SL+NTV ++C+H + KDT+EA K++ Sbjct 62 TVLDPLVPTGSENLKSLFNTVCVIWCIHAEEKAKDTEEAKQKVQ 105 >RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Spacer peptide 2; Short=SP2; AltName: Full=p1; Contains: RecName: Full=p6-gag [Human immunodeficiency virus type 2 (ISOLATE CAM2)] Sequence ID: P24106.3 Length: 521 Range 1: 2 to 100 Score:126 bits(316), Expect:6e-34, Method:Compositional matrix adjust., Identities:59/99(60%), Positives:76/99(76%), Gaps:0/99(0%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GAR SVL G + D EK+RLRPGGKKKYKLKHIVWA+ EL+RF + LLE+ EGC++IL Sbjct 2 GARNSVLRGKKADELEKVRLRPGGKKKYKLKHIVWAANELDRFGLAESLLESKEGCQRIL 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEA 99 L P + TGSE L+SL+NTV ++C+H ++KDT+EA Sbjct 62 KVLDPLVPTGSENLKSLFNTVCVIWCIHAEEKVKDTEEA 100 >RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Spacer peptide 2; Short=SP2; AltName: Full=p1; Contains: RecName: Full=p6-gag [HIV-2 B_UC1] Sequence ID: Q76633.3 Length: 521 Range 1: 2 to 100 Score:125 bits(315), Expect:8e-34, Method:Compositional matrix adjust., Identities:58/99(59%), Positives:75/99(75%), Gaps:0/99(0%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GAR+SVLSG + D EK+RLRPGGKK+Y LKHI+WA EL+RF + LLE+ EGC +IL Sbjct 2 GARSSVLSGKKTDELEKVRLRPGGKKRYCLKHIIWAVNELDRFGLAESLLESKEGCHKIL 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEA 99 L P + TGSE L+SL+NTV +YC+H ++KDT+EA Sbjct 62 TVLAPLVPTGSENLKSLFNTVCVIYCLHAEEKVKDTEEA 100 >RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Spacer peptide p1; Contains: RecName: Full=p6-gag [Simian immunodeficiency virus (PBJ/BC13 ISOLATE) (SOOTY MANGABEY)] Sequence ID: P19504.1 Length: 507 Range 1: 2 to 100 Score:125 bits(314), Expect:9e-34, Method:Compositional matrix adjust., Identities:60/99(61%), Positives:75/99(75%), Gaps:0/99(0%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GAR SVLSG + D EKIRLRPGGKK+Y+LKHIVWA+ EL+RF + LLE EGC++IL Sbjct 2 GARNSVLSGKKADELEKIRLRPGGKKRYQLKHIVWAANELDRFGLAESLLENKEGCQKIL 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEA 99 L P + TGSE L+SLYNTV L+C+H ++K T+EA Sbjct 62 SVLAPLVPTGSENLKSLYNTVCVLWCIHAEEKVKHTEEA 100 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 2 (ISOLATE CAM2)] Sequence ID: P24107.3 Length: 1462 Range 1: 2 to 100 Score:126 bits(317), Expect:1e-33, Method:Compositional matrix adjust., Identities:59/99(60%), Positives:76/99(76%), Gaps:0/99(0%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GAR SVL G + D EK+RLRPGGKKKYKLKHIVWA+ EL+RF + LLE+ EGC++IL Sbjct 2 GARNSVLRGKKADELEKVRLRPGGKKKYKLKHIVWAANELDRFGLAESLLESKEGCQRIL 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEA 99 L P + TGSE L+SL+NTV ++C+H ++KDT+EA Sbjct 62 KVLDPLVPTGSENLKSLFNTVCVIWCIHAEEKVKDTEEA 100 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 2 (ISOLATE ST)] Sequence ID: P20876.3 Length: 1463 Range 1: 2 to 105 Score:126 bits(317), Expect:1e-33, Method:Compositional matrix adjust., Identities:60/104(58%), Positives:78/104(75%), Gaps:0/104(0%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GAR SVL G + D EKIRLRPGGKKKY+LKHIVWA+ EL+RF + LLE+ EGC++IL Sbjct 2 GARNSVLRGKKADELEKIRLRPGGKKKYRLKHIVWAANELDRFGLAESLLESKEGCQKIL 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIE 104 L P + TGSE L+SL+NTV ++C+H + KDT+EA K++ Sbjct 62 TVLDPLVPTGSENLKSLFNTVCVIWCIHAEEKAKDTEEAKQKVQ 105 >RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Spacer peptide p1; Contains: RecName: Full=p6-gag [Simian immunodeficiency virus - stm] Sequence ID: P31634.1 Length: 510 Range 1: 2 to 100 Score:124 bits(312), Expect:2e-33, Method:Compositional matrix adjust., Identities:57/99(58%), Positives:77/99(77%), Gaps:0/99(0%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GAR+SVLSG + D EK+RLRPGGKKKY LKH+VWA+ EL+RF + LLE+ EGC++IL Sbjct 2 GARSSVLSGKKADELEKVRLRPGGKKKYMLKHVVWAANELDRFGLAESLLESKEGCQKIL 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEA 99 L+P + TGSE L+SL+NTV ++C+H ++K T+EA Sbjct 62 TVLEPLVPTGSENLKSLFNTVCVIWCIHAEEKVKHTEEA 100 >RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Spacer peptide p1; Contains: RecName: Full=p6-gag [Simian immunodeficiency virus (MM142-83 ISOLATE)] Sequence ID: P05894.1 Length: 506 Range 1: 2 to 100 Score:124 bits(312), Expect:2e-33, Method:Compositional matrix adjust., Identities:59/99(60%), Positives:74/99(74%), Gaps:0/99(0%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GAR SVLSG + D EKIRLRPGGKKKY LKH+VWA+ EL+RF + LLE EGC++IL Sbjct 2 GARNSVLSGKKADELEKIRLRPGGKKKYMLKHVVWAANELDRFGLAESLLENKEGCQKIL 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEA 99 L P + TGSE L+SLYNTV ++C+H ++K T+EA Sbjct 62 SVLAPLVPTGSENLKSLYNTVCVIWCIHAEEKVKHTEEA 100 >RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Spacer peptide 2; Short=SP2; AltName: Full=p1; Contains: RecName: Full=p6-gag [Human immunodeficiency virus type 2 (ISOLATE NIH-Z)] Sequence ID: P05891.3 Length: 519 Range 1: 2 to 100 Score:124 bits(312), Expect:2e-33, Method:Compositional matrix adjust., Identities:59/99(60%), Positives:75/99(75%), Gaps:0/99(0%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GAR SVL G + D EKIRLRPGGKKKYKLKHIVWA+ EL+RF + LLE+ EGC++IL Sbjct 2 GARNSVLRGKKADELEKIRLRPGGKKKYKLKHIVWAANELDRFGLAESLLESKEGCQKIL 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEA 99 L P + TGSE L+SL+NTV ++C+H ++KDT+ A Sbjct 62 TVLDPLVPTGSENLKSLFNTVCVIWCIHAEEKVKDTEGA 100 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Simian immunodeficiency virus (PBJ/BC13 ISOLATE) (SOOTY MANGABEY)] Sequence ID: P19505.2 Length: 1449 Range 1: 2 to 100 Score:125 bits(315), Expect:2e-33, Method:Compositional matrix adjust., Identities:60/99(61%), Positives:75/99(75%), Gaps:0/99(0%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GAR SVLSG + D EKIRLRPGGKK+Y+LKHIVWA+ EL+RF + LLE EGC++IL Sbjct 2 GARNSVLSGKKADELEKIRLRPGGKKRYQLKHIVWAANELDRFGLAESLLENKEGCQKIL 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEA 99 L P + TGSE L+SLYNTV L+C+H ++K T+EA Sbjct 62 SVLAPLVPTGSENLKSLYNTVCVLWCIHAEEKVKHTEEA 100 >RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Spacer peptide 2; Short=SP2; AltName: Full=p1; Contains: RecName: Full=p6-gag [Human immunodeficiency virus type 2 (ISOLATE SBLISY)] Sequence ID: P12450.3 Length: 520 Range 1: 2 to 100 Score:124 bits(311), Expect:3e-33, Method:Compositional matrix adjust., Identities:57/99(58%), Positives:76/99(76%), Gaps:0/99(0%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GA+ SVL G + D EKIRLRPGGKKKY+LKHIVWA+ EL+RF + LLE+ EGC++I+ Sbjct 2 GAKNSVLRGKKADELEKIRLRPGGKKKYRLKHIVWAANELDRFGLTESLLESKEGCQKII 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEA 99 L+P + TGSE L+SLYNT ++C+H ++KDT+EA Sbjct 62 SVLEPLVPTGSENLKSLYNTTCVIWCLHAEEKVKDTEEA 100 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-2 B_UC1] Sequence ID: Q76634.3 Length: 1471 Range 1: 2 to 100 Score:125 bits(314), Expect:3e-33, Method:Compositional matrix adjust., Identities:58/99(59%), Positives:75/99(75%), Gaps:0/99(0%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GAR+SVLSG + D EK+RLRPGGKK+Y LKHI+WA EL+RF + LLE+ EGC +IL Sbjct 2 GARSSVLSGKKTDELEKVRLRPGGKKRYCLKHIIWAVNELDRFGLAESLLESKEGCHKIL 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEA 99 L P + TGSE L+SL+NTV +YC+H ++KDT+EA Sbjct 62 TVLAPLVPTGSENLKSLFNTVCVIYCLHAEEKVKDTEEA 100 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 2 (ISOLATE NIH-Z)] Sequence ID: P05962.3 Length: 1461 Range 1: 2 to 100 Score:125 bits(313), Expect:4e-33, Method:Compositional matrix adjust., Identities:59/99(60%), Positives:75/99(75%), Gaps:0/99(0%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GAR SVL G + D EKIRLRPGGKKKYKLKHIVWA+ EL+RF + LLE+ EGC++IL Sbjct 2 GARNSVLRGKKADELEKIRLRPGGKKKYKLKHIVWAANELDRFGLAESLLESKEGCQKIL 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEA 99 L P + TGSE L+SL+NTV ++C+H ++KDT+ A Sbjct 62 TVLDPLVPTGSENLKSLFNTVCVIWCIHAEEKVKDTEGA 100 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Simian immunodeficiency virus (MM142-83 ISOLATE)] Sequence ID: P05896.2 Length: 1448 Range 1: 2 to 100 Score:125 bits(313), Expect:5e-33, Method:Compositional matrix adjust., Identities:59/99(60%), Positives:74/99(74%), Gaps:0/99(0%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GAR SVLSG + D EKIRLRPGGKKKY LKH+VWA+ EL+RF + LLE EGC++IL Sbjct 2 GARNSVLSGKKADELEKIRLRPGGKKKYMLKHVVWAANELDRFGLAESLLENKEGCQKIL 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEA 99 L P + TGSE L+SLYNTV ++C+H ++K T+EA Sbjct 62 SVLAPLVPTGSENLKSLYNTVCVIWCIHAEEKVKHTEEA 100 >RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Spacer peptide p1; Contains: RecName: Full=p6-gag [Simian immunodeficiency virus - mac K6W] Sequence ID: P05893.1 Length: 506 Range 1: 2 to 100 Score:123 bits(309), Expect:5e-33, Method:Compositional matrix adjust., Identities:58/99(59%), Positives:74/99(74%), Gaps:0/99(0%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GAR +VLSG + D EKIRLRPGGKKKY LKH+VWA+ EL+RF + LLE EGC++IL Sbjct 2 GARNAVLSGKKADELEKIRLRPGGKKKYMLKHVVWAANELDRFGLAESLLENKEGCQKIL 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEA 99 L P + TGSE L+SLYNTV ++C+H ++K T+EA Sbjct 62 SVLAPLVPTGSENLKSLYNTVCVIWCIHAEEKVKHTEEA 100 >RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Spacer peptide 2; Short=SP2; AltName: Full=p1; Contains: RecName: Full=p6-gag [Human immunodeficiency virus type 2 (ISOLATE D205,7)] Sequence ID: P15832.3 Length: 521 Range 1: 2 to 100 Score:124 bits(310), Expect:5e-33, Method:Compositional matrix adjust., Identities:57/99(58%), Positives:74/99(74%), Gaps:0/99(0%) Query 1 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQIL 60 GAR SVLSG + D EK+RLRPGGKKKY LKH+VWA EL+RF + LLE+ EGC++IL Sbjct 2 GARGSVLSGKKTDELEKVRLRPGGKKKYMLKHVVWAVNELDRFGLAESLLESKEGCQKIL 61 Query 61 GQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEA 99 L P + TGSE L+SL+N V ++C+H ++KDT+EA Sbjct 62 KVLAPLVPTGSENLKSLFNIVCVIFCLHAEEKVKDTEEA 100