MAST - Motif Alignment and Search Tool
MAST version 4.3.0 (Release date: Sat Sep 26 01:51:56 PDT 2009)
For further information on how to interpret these results or to get
a copy of the MAST software please access http://meme.nbcr.net.
REFERENCE
If you use this program in your research, please cite:
Timothy L. Bailey and Michael Gribskov,
"Combining evidence using p-values: application to sequence homology
searches", Bioinformatics, 14(48-54), 1998.
DATABASE AND MOTIFS
DATABASE ./PF00383_seed.fasta (peptide)
Last updated on Wed Apr 25 00:29:13 2012
Database contains 59 sequences, 6363 residues
MOTIFS ./memeout.txt (peptide)
MOTIF WIDTH BEST POSSIBLE MATCH
----- ----- -------------------
1 50 WNNVEEQNDPTAHAEMIAIREACRRLNNYQLDDCDLYVTCQPCMMCCGAI
2 11 EVPVGAVVVKD
3 13 WSRPKWVFYGMSD
PAIRWISE MOTIF CORRELATIONS:
MOTIF 1 2
----- ----- -----
2 0.17
3 0.22 0.13
No overly similar pairs (correlation > 0.60) found.
Random model letter frequencies (from non-redundant database):
A 0.073 C 0.018 D 0.052 E 0.062 F 0.040 G 0.069 H 0.022 I 0.056 K 0.058
L 0.092 M 0.023 N 0.046 P 0.051 Q 0.041 R 0.052 S 0.074 T 0.059 V 0.064
W 0.013 Y 0.033
SECTION I: HIGH-SCORING SEQUENCES
- Each of the following 52 sequences has E-value less than 10.
- The E-value of a sequence is the expected number of sequences
in a random database of the same size that would match the motifs as
well as the sequence does and is equal to the combined p-value of the
sequence times the number of sequences in the database.
- The combined p-value of a sequence measures the strength of the
match of the sequence to all the motifs and is calculated by
- finding the score of the single best match of each motif
to the sequence (best matches may overlap),
- calculating the sequence p-value of each score,
- forming the product of the p-values,
- taking the p-value of the product.
- The sequence p-value of a score is defined as the
probability of a random sequence of the same length containing
some match with as good or better a score.
- The score for the match of a position in a sequence to a motif
is computed by by summing the appropriate entry from each column of
the position-dependent scoring matrix that represents the motif.
- Sequences shorter than one or more of the motifs are skipped.
- The table is sorted by increasing E-value.
| Links | Sequence Name | Description | E-value | Length
|
|---|
|
| GUAD_BACSU/1-102
|
| 3.1e-53
| 102
|
|
| TADA_AQUAE/1-101
|
| 4.9e-53
| 101
|
|
| TADA_HAEIN/8-110
|
| 2.9e-31
| 103
|
|
| Q51833_PORGI/7-108
|
| 5.7e-29
| 102
|
|
| O65755_CICAR/28-130
|
| 3e-27
| 103
|
|
| TADA_BACSU/1-102
|
| 1.8e-26
| 102
|
|
| P73717_SYNY3/5-107
|
| 4.2e-25
| 103
|
|
| O84851_CHLTR/3-104
|
| 1e-24
| 102
|
|
| TADA_SHIFL/5-106
|
| 1.3e-23
| 102
|
|
| Q55162_SYNY3/3-106
|
| 1.9e-22
| 104
|
|
| O69719_MYCTU/1-103
|
| 1.9e-07
| 103
|
|
| FCY1_YEAST/8-110
|
| 2e-07
| 103
|
|
| O86961_THENE/1-103
|
| 2.3e-07
| 103
|
|
| RIBD_BACSU/1-99
|
| 2.9e-07
| 99
|
|
| DCTD_BPMD2/4-126
|
| 5.3e-06
| 123
|
|
| FCA1_CANAL/2-103
|
| 2.8e-05
| 102
|
|
| RIBD_AQUAE/3-103
|
| 3.4e-05
| 101
|
|
| RIBD_MYCTU/6-107
|
| 4.3e-05
| 102
|
|
| FCYS_SCHPO/7-106
|
| 6.5e-05
| 100
|
|
| YLXG_VIBFI/3-111
|
| 0.00041
| 109
|
|
| RIBD_ECOLI/1-100
|
| 0.00046
| 100
|
|
| DCTD_BPT4/1-151
|
| 0.00058
| 151
|
|
| DCTD_CAEEL/48-162
|
| 0.0006
| 115
|
|
| RIBD_CORAM/12-113
|
| 0.0028
| 102
|
|
| DCTD_HUMAN/13-129
|
| 0.0036
| 117
|
|
| TAD2_YEAST/1-107
|
| 0.0062
| 107
|
|
| RIBD_ACTPL/12-112
|
| 0.0066
| 101
|
|
| O28510_ARCFU/4-125
|
| 0.01
| 122
|
|
| O41078_PBCV1/1-114
|
| 0.021
| 114
|
|
| RIBD_HAEIN/5-105
|
| 0.033
| 101
|
|
| O74069_CENSM/15-142
|
| 0.035
| 128
|
|
| O59259_PYRHO/20-133
|
| 0.049
| 114
|
|
| RIB2_SCHPO/255-361
|
| 0.061
| 107
|
|
| TAD3_YEAST/164-273
|
| 0.063
| 110
|
|
| RIBD_SYNY3/1-101
|
| 0.11
| 101
|
|
| O05791_MYCTU/18-114
|
| 0.2
| 97
|
|
| RIBD_CHLTR/5-105
|
| 0.21
| 101
|
|
| Q22922_CAEEL/9-114
|
| 0.22
| 106
|
|
| Q52724_RHOCO/26-124
|
| 0.5
| 99
|
|
| DCTD_YEAST/161-279
|
| 0.52
| 119
|
|
| CDD_HAEIN/46-148
|
| 1
| 103
|
|
| O26035_HELPY/1-131
|
| 1.1
| 131
|
|
| Q20628_CAEEL/9-114
|
| 1.1
| 106
|
|
| CDD_SCHPO/3-107
|
| 1.2
| 105
|
|
| DCTD_SCHPO/198-318
|
| 1.5
| 121
|
|
| COMEB_BACSU/4-117
|
| 1.6
| 114
|
|
| BSR_BACCE/8-117
|
| 2
| 110
|
|
| O65896_ARATH/22-124
|
| 2.4
| 103
|
|
| RIB2_YEAST/432-543
|
| 2.4
| 112
|
|
| CDD_HUMAN/12-117
|
| 2.9
| 106
|
|
| O83298_TREPA/11-133
|
| 3.9
| 123
|
|
| CDD_BACSU/1-105
|
| 8.2
| 105
|
SECTION II: MOTIF DIAGRAMS
- The ordering and spacing of all non-overlapping motif occurrences
are shown for each high-scoring sequence listed in Section I.
- A motif occurrence is defined as a position in the sequence whose
match to the motif has POSITION p-value less than 0.0001.
- The POSITION p-value of a match is the probability of
a single random subsequence of the length of the motif
scoring at least as well as the observed match.
- For each sequence, all motif occurrences are shown unless there
are overlaps. In that case, a motif occurrence is shown only if its
p-value is less than the product of the p-values of the other
(lower-numbered) motif occurrences that it overlaps.
- The table also shows the E-value of each sequence.
- Spacers and motif occurences are indicated by
- Spacers and motif occurences are indicated by
- Spacers and motif occurences are indicated by
- occurrence of motif `n' with p-value less than 0.0001.
- Sequences longer than 1000 are not shown to scale and are indicated by thicker lines.
| Links | Name | Expect | Motifs
|
|---|
|
| GUAD_BACSU/1-102
| 3.1e-53
|
|
|
| TADA_AQUAE/1-101
| 4.9e-53
|
|
|
| TADA_HAEIN/8-110
| 2.9e-31
|
|
|
| Q51833_PORGI/7-108
| 5.7e-29
|
|
|
| O65755_CICAR/28-130
| 3e-27
|
|
|
| TADA_BACSU/1-102
| 1.8e-26
|
|
|
| P73717_SYNY3/5-107
| 4.2e-25
|
|
|
| O84851_CHLTR/3-104
| 1e-24
|
|
|
| TADA_SHIFL/5-106
| 1.3e-23
|
|
|
| Q55162_SYNY3/3-106
| 1.9e-22
|
|
|
| O69719_MYCTU/1-103
| 1.9e-07
|
|
|
| FCY1_YEAST/8-110
| 2e-07
|
|
|
| O86961_THENE/1-103
| 2.3e-07
|
|
|
| RIBD_BACSU/1-99
| 2.9e-07
|
|
|
| DCTD_BPMD2/4-126
| 5.3e-06
|
|
|
| FCA1_CANAL/2-103
| 2.8e-05
|
|
|
| RIBD_AQUAE/3-103
| 3.4e-05
|
|
|
| RIBD_MYCTU/6-107
| 4.3e-05
|
|
|
| FCYS_SCHPO/7-106
| 6.5e-05
|
|
|
| YLXG_VIBFI/3-111
| 0.00041
|
|
|
| RIBD_ECOLI/1-100
| 0.00046
|
|
|
| DCTD_BPT4/1-151
| 0.00058
|
|
|
| DCTD_CAEEL/48-162
| 0.0006
|
|
|
| RIBD_CORAM/12-113
| 0.0028
|
|
|
| DCTD_HUMAN/13-129
| 0.0036
|
|
|
| TAD2_YEAST/1-107
| 0.0062
|
|
|
| RIBD_ACTPL/12-112
| 0.0066
|
|
|
| O28510_ARCFU/4-125
| 0.01
|
|
|
| O41078_PBCV1/1-114
| 0.021
|
|
|
| RIBD_HAEIN/5-105
| 0.033
|
|
|
| O74069_CENSM/15-142
| 0.035
|
|
|
| O59259_PYRHO/20-133
| 0.049
|
|
|
| RIB2_SCHPO/255-361
| 0.061
|
|
|
| TAD3_YEAST/164-273
| 0.063
|
|
|
| RIBD_SYNY3/1-101
| 0.11
|
|
|
| O05791_MYCTU/18-114
| 0.2
|
|
|
| RIBD_CHLTR/5-105
| 0.21
|
|
|
| Q22922_CAEEL/9-114
| 0.22
|
|
|
| Q52724_RHOCO/26-124
| 0.5
|
|
|
| DCTD_YEAST/161-279
| 0.52
|
|
|
| CDD_HAEIN/46-148
| 1
|
|
|
| O26035_HELPY/1-131
| 1.1
|
|
|
| Q20628_CAEEL/9-114
| 1.1
|
|
|
| CDD_SCHPO/3-107
| 1.2
|
|
|
| DCTD_SCHPO/198-318
| 1.5
|
|
|
| COMEB_BACSU/4-117
| 1.6
|
|
|
| BSR_BACCE/8-117
| 2
|
|
|
| O65896_ARATH/22-124
| 2.4
|
|
|
| RIB2_YEAST/432-543
| 2.4
|
|
|
| CDD_HUMAN/12-117
| 2.9
|
|
|
| O83298_TREPA/11-133
| 3.9
|
|
|
| CDD_BACSU/1-105
| 8.2
|
|
| SCALE
|
| | |
| |
| |
| |
| |
| |
| 1 |
25 |
50 |
75 |
100 |
125 |
|
|---|
SECTION III: ANNOTATED SEQUENCES
- The positions and p-values of the non-overlapping motif occurrences
are shown above the actual sequence for each of the high-scoring
sequences from Section I.
- A motif occurrence is defined as a position in the sequence whose
match to the motif has POSITION p-value less than 0.0001 as
defined in Section II.
- For each sequence, the first line specifies the name of the sequence.
- The second (and possibly more) lines give a description of the
sequence.
- Following the description line(s) is a line giving the length,
combined p-value, and E-value of the sequence as defined in Section I.
- The next line reproduces the motif diagram from Section II.
- The entire sequence is printed on the following lines.
- Motif occurrences are indicated directly above their positions in the
sequence on lines showing
- the motif number of the occurrence,
- the position p-value of the occurrence,
- the best possible match to the motif, and
- columns whose match to the motif has a positive score (indicated
by a plus sign).
GUAD_BACSU/1-102
LENGTH = 102 COMBINED P-VALUE = 5.33e-55 E-VALUE = 3.1e-53
DIAGRAM: 22-[2]-7-[1]-12
[2] [1]
2.4e-11 1.3e-51
EVPVGAVVVKD WNNVEEQNDPTAHAEMIAIREACRRLNNYQLDDCD
+++++++++++ +++++++++++++++++++++++++++++++++++
1 MNHETFLKRAVTLACEGVNAGIGGPFGAVIVKDGAIIAEGQNNVTTSNDPTAHAEVTAIRKACKVLGAYQLDDCI
LYVTCQPCMMCCGAI
+++++++++++++++
76 LYTSCEPCPMCLGAIYWARPKAVFYAA
TADA_AQUAE/1-101
LENGTH = 101 COMBINED P-VALUE = 8.25e-55 E-VALUE = 4.9e-53
DIAGRAM: 21-[2]-7-[1]-12
[2] [1]
1.4e-11 2.6e-51
EVPVGAVVVKD WNNVEEQNDPTAHAEMIAIREACRRLNNYQLDDCDL
+++++++++++ ++++++++++++++++++++++++++++++++++++
1 MGKEYFLKVALREAKRAFEKGEVPVGAIIVKEGEIISKAHNSVEELKDPTAHAEMLAIKEACRRLNTKYLEGCEL
YVTCQPCMMCCGAI
++++++++++++++
76 YVTLEPCIMCSYALVLSRIEKVIFSA
TADA_HAEIN/8-110
LENGTH = 103 COMBINED P-VALUE = 4.92e-33 E-VALUE = 2.9e-31
DIAGRAM: 22-[2]-8-[1]-12
[2] [1]
4.5e-10 5.6e-30
EVPVGAVVVKD WNNVEEQNDPTAHAEMIAIREACRRLNNYQLDDC
+ +++++++++ ++ + + ++++++++++++ +++ ++++ +
1 SEFDEKMMRYALELADKAEALGEIPVGAVLVDDARNIIGEGWNLSIVQSDPTAHAEIIALRNGAKNIQNYRLLNS
DLYVTCQPCMMCCGAI
+++++++++ ++++++
76 TLYVTLEPCTMCAGAILHSRIKRLVFGA
Q51833_PORGI/7-108
LENGTH = 102 COMBINED P-VALUE = 9.66e-31 E-VALUE = 5.7e-29
DIAGRAM: 22-[2]-7-[1]-12
[2] [1]
1.0e-06 2.2e-30
EVPVGAVVVKD WNNVEEQNDPTAHAEMIAIREACRRLNNYQLDDCD
+ +++++++ ++ ++ +++++++++++++ + ++ +++ +++
1 ATDDIRYMRIALEEARAAADEGEIPIGAVIVCKGQIVARAHNRVERLNDPTAHAEMLAITMAVDAIGGKYLRDCT
LYVTCQPCMMCCGAI
++++ +++ ++++++
76 LYVTVEPCLMCAGALRWTQIPRVVYGA
O65755_CICAR/28-130
LENGTH = 103 COMBINED P-VALUE = 5.02e-29 E-VALUE = 3e-27
DIAGRAM: 23-[2]-7-[1]-12
[2] [1]
9.3e-08 7.0e-29
EVPVGAVVVKD WNNVEEQNDPTAHAEMIAIREACRRLNNYQLDDC
+++++++++ ++ + ++++++++++++++++ ++ + ++
1 QDRDHKFLRKAVEEAYKGVDCGDGGPFGAVIVHNDEVVASCHNMVLNYTDPTAHAEVTAIREACKKLKQIELSDC
DLYVTCQPCMMCCGAI
+++ ++++++++ +++
76 EIYASCEPCPMCFGAIHLSRIKRLVYGA
TADA_BACSU/1-102
LENGTH = 102 COMBINED P-VALUE = 3.03e-28 E-VALUE = 1.8e-26
DIAGRAM: 22-[2]-7-[1]-12
[2] [1]
5.7e-08 8.0e-28
EVPVGAVVVKD WNNVEEQNDPTAHAEMIAIREACRRLNNYQLDDCD
+++++++++ ++ ++ + ++++++ + ++++ +++ ++++ +
1 MTQDELYMKEAIKEAKKAEEKGEVPIGAVLVINGEIIARAHNLRETEQRSIAHAEMLVIDEACKALGTWRLEGAT
LYVTCQPCMMCCGAI
++++++++++++++
76 LYVTLEPCPMCAGAVVLSRVEKVVFGA
P73717_SYNY3/5-107
LENGTH = 103 COMBINED P-VALUE = 7.12e-27 E-VALUE = 4.2e-25
DIAGRAM: 22-[2]-8-[1]-12
[2] [1]
5.9e-07 1.9e-27
EVPVGAVVVKD WNNVEEQNDPTAHAEMIAIREACRRLNNYQLDDC
+ +++++++ ++ ++ ++++++++ ++++++ +++ +
1 LPTHEDWMQMAIALAEEAGNVGEIPVGAVVVNAMGEVLATGQNRKQRDQNPIAHAEMLAIQTACRRLGHWRLNEC
DLYVTCQPCMMCCGAI
++++++++++++ +++
76 TLYVTLEPCPMCTGAIIQARLGLLVYGT
O84851_CHLTR/3-104
LENGTH = 102 COMBINED P-VALUE = 1.70e-26 E-VALUE = 1e-24
DIAGRAM: 22-[2]-7-[1]-12
[2] [1]
7.3e-07 4.4e-27
EVPVGAVVVKD WNNVEEQNDPTAHAEMIAIREACRRLNNYQLDDCD
+++++ +++ +++++ +++++ +++++ + + + + ++ +++
1 IEKDLFFMKKALDEARKAYEQDEVPVGCIIVHGDKIIARGHNSVEQLKDPTVHAEMICISAAAEYLENWRLKDTI
LYVTCQPCMMCCGAI
++ +++++ ++++++
76 LYCTLEPCLMCAGAIQLARIPRIVWGA
TADA_SHIFL/5-106
LENGTH = 102 COMBINED P-VALUE = 2.20e-25 E-VALUE = 1.3e-23
DIAGRAM: 22-[2]-7-[1]-12
[2] [1]
2.0e-08 2.0e-24
EVPVGAVVVKD WNNVEEQNDPTAHAEMIAIREACRRLNNYQLDDCD
+++++++++ ++ + ++++++++ +++ + + ++++ + +
1 EFSHEYWMRHALTLAKRAWDEREVPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNYRLIDAT
LYVTCQPCMMCCGAI
++++++++ +++++
76 LYVTLEPCVMCAGAMIHSRIGRVVFGA
Q55162_SYNY3/3-106
LENGTH = 104 COMBINED P-VALUE = 3.18e-24 E-VALUE = 1.9e-22
DIAGRAM: 24-[2]-7-[1]-12
[2] [1]
2.5e-09 2.2e-22
EVPVGAVVVKD WNNVEEQNDPTAHAEMIAIREACRRLNNYQLDD
+++++ +++++ ++++ +++ +++++ +++++++ ++ ++++
1 TEQDREYMRQAIAIMRDAGVVNKTGGPFGVVIVKDGEVIGAAGNSVIQDNDPSAHAEVNAIREACKTVGSWNLEG
CDLYVTCQPCMMCCGAI
+ +++ ++++ +
76 AVMYSSCECCPMCYATSYWARIDKIYYAA
O69719_MYCTU/1-103
LENGTH = 103 COMBINED P-VALUE = 3.28e-09 E-VALUE = 1.9e-07
DIAGRAM: 21-[2]-9-[1]-12
[2] [1]
5.8e-07 2.8e-08
EVPVGAVVVKD WNNVEEQNDPTAHAEMIAIREACRRLNNYQLDDC
++++++++ ++ + +++++
1 MTTDEDLIRAALAVAATAGPRDVPVGAVVVGADGTELARAVNAREALGDPTAHAEILAMRLAAGVLGDGWRLEGT
DLYVTCQPCMMCCGAI
++ ++ +++ ++++++
76 TLAVTVEPCTMCAGALVLARVARLVFGA
FCY1_YEAST/8-110
LENGTH = 103 COMBINED P-VALUE = 3.32e-09 E-VALUE = 2e-07
DIAGRAM: 41-[1]-12
[1]
2.4e-12
WNNVEEQNDPTAHAEMIAIREACRRLNNYQLDDC
+ ++ + + + + ++ + ++
1 SKWDQKGMDIAYEEAALGYKEGGVPIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEISTLENCGRLEGKVYKDT
DLYVTCQPCMMCCGAI
++++++ ++ ++ +++
76 TLYTTLSPCDMCTGAIIMYGIPRCVVGE
O86961_THENE/1-103
LENGTH = 103 COMBINED P-VALUE = 3.94e-09 E-VALUE = 2.3e-07
DIAGRAM: 22-[2]-70
[2]
1.7e-11
EVPVGAVVVKD
+++++++++++
1 MYERFMKRAIELAKKGLGRVNPNPPVGAVVVKEGRIISEGFHPLFLVGPHAERVAIESAKRKGEDLTGTTLVVTL
RIBD_BACSU/1-99
LENGTH = 99 COMBINED P-VALUE = 4.89e-09 E-VALUE = 2.9e-07
DIAGRAM: 22-[2]-66
[2]
3.6e-11
EVPVGAVVVKD
+++++++++++
1 MEEYYMKLALDLAKQGEGQTESNPLVGAVVVKDGQIVGMGAHLKYGEAHAEVHAIHMAGAHAEGADIYVTLEPCS
DCTD_BPMD2/4-126
LENGTH = 123 COMBINED P-VALUE = 8.99e-08 E-VALUE = 5.3e-06
DIAGRAM: 21-[2]-29-[1]-12
[2] [1]
6.6e-07 4.6e-07
EVPVGAVVVKD WNNVEEQNDPTAHA
++++++++ + ++
1 PDWDEYFLGIATAAAQRSDCERSKVGAVVVKDRRVRGTGYNGAPAGAAGCSTCPRRLSGAVPGVSDYSSGATRCV
EMIAIREACRRLNNYQLDDCDLYVTCQPCMMCCGAI
+ + + + + +++++ +++ ++ +
76 AVHAEANALLYCDREDLIGATLYVTREPCYACSNLIAASGIERVVYPK
FCA1_CANAL/2-103
LENGTH = 102 COMBINED P-VALUE = 4.80e-07 E-VALUE = 2.8e-05
DIAGRAM: 40-[1]-12
[1]
2.0e-10
WNNVEEQNDPTAHAEMIAIREACRRLNNYQLDDCD
+ ++ + + ++ + +++
1 TFDDKKGLQVALDQAKKSYSEGGIPIGSCIISSDDTVLGQGHNERIQKHSAILHGEMSALENAGRLPGKTYKDCT
LYVTCQPCMMCCGAI
+++++ ++ ++ +++
76 IYTTLSPCSMCTGAILLYGFKRVVMGE
RIBD_AQUAE/3-103
LENGTH = 101 COMBINED P-VALUE = 5.75e-07 E-VALUE = 3.4e-05
DIAGRAM: 24-[2]-66
[2]
3.6e-09
EVPVGAVVVKD
++ ++++++++
1 REIDKNYMKLALSLAKKRKGYTHPNPTVGAVVVKEGKIVGLGYHEKAGKPHAEVMALGQAGEKAKGATLYVTLEP
RIBD_MYCTU/6-107
LENGTH = 102 COMBINED P-VALUE = 7.23e-07 E-VALUE = 4.3e-05
DIAGRAM: 24-[2]-67
[2]
2.4e-08
EVPVGAVVVKD
+++++++++
1 VKSIDEAMGLAIEHSYQVKGTTYPKPPVGAVIVDPNGRIVGAGGTEPAGGDHAEVVALRRAGGLAAGAIVVVTME
FCYS_SCHPO/7-106
LENGTH = 100 COMBINED P-VALUE = 1.10e-06 E-VALUE = 6.5e-05
DIAGRAM: 22-[2]-5-[1]-12
[2] [1]
3.7e-06 3.3e-07
EVPVGAVVVKD WNNVEEQNDPTAHAEMIAIREACRRLNNYQLDDCDLY
+++ +++++ + ++ ++++
1 SEKDLAYLREAIKVSQQARDEGQHPFGCIIVDENDNVIMSAGNRVPDGDVTQHAETRAVGLITKTRRDLEKCTLY
VTCQPCMMCCGAI
++ ++++++++++
76 TSTEPCAMCSGAIFWSGIRRMIFGL
YLXG_VIBFI/3-111
LENGTH = 109 COMBINED P-VALUE = 6.95e-06 E-VALUE = 0.00041
DIAGRAM: 47-[1]-12
[1]
2.4e-07
WNNVEEQNDPTAHAEMIAIREACRRLNN
+ + + + +
1 SKWAKRFFQMAELVGSWSKDPSTQVGAVITKHNRIVSVGFNGYPHGVSDSADTDEREIKYLKTLHAEENAILFAK
YQLDDCDLYVTCQPCMMCCGAI
++++++ ++ +++ +++ +
76 RDLEGCDIWVTHFPCPNCAAKIIQTGISKVYCPE
RIBD_ECOLI/1-100
LENGTH = 100 COMBINED P-VALUE = 7.71e-06 E-VALUE = 0.00046
DIAGRAM: 23-[2]-66
[2]
6.8e-08
EVPVGAVVVKD
++ ++ +++++
1 MQDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEKAKGATAYVTLEPC
DCTD_BPT4/1-151
LENGTH = 151 COMBINED P-VALUE = 9.78e-06 E-VALUE = 0.00058
DIAGRAM: 89-[1]-12
[1]
6.7e-07
WNNVEEQNDPTAHAEMIAIREACRRLNNYQLDDCDLYVTCQPCMMCCGAI
+ + + + + ++ + ++++ +++ ++ ++
76 VSFGSTDRFVLAKEHRSAHSEWSSKNEIHAELNAILFAARNGSSIEGATMYVTLSPCPDCAKAIAQSGIKKLVYC
DCTD_CAEEL/48-162
LENGTH = 115 COMBINED P-VALUE = 1.02e-05 E-VALUE = 0.0006
DIAGRAM: 21-[2]-21-[1]-12
[2] [1]
3.2e-05 3.2e-07
EVPVGAVVVKD WNNVEEQNDPTAHAEMIAIREA
+ ++ ++++ + + + + +
1 LKKHQRFLRIAKVTSLRSKDPNTQVGCVIVDKDNCIVSVGYNGFPIGVDDDVFRWDKEDPEDNKHLYVVHAEMNA
CRRLNNYQLDDCDLYVTCQPCMMCCGAI
+ + +++ ++++ ++ ++ +
76 IINKRCTTLHDCTVYVTLFPCNKCAQMLIQSRVKKVYFLE
RIBD_CORAM/12-113
LENGTH = 102 COMBINED P-VALUE = 4.69e-05 E-VALUE = 0.0028
DIAGRAM: 24-[2]-67
[2]
1.2e-06
EVPVGAVVVKD
++++++++
1 APIVEQALRTAMSAGWEVRGTTSPNPPVGAVIISTSGEIVGTGATQPVGGVHAEVQALADAAGKTEGATAVVTLE
DCTD_HUMAN/13-129
LENGTH = 117 COMBINED P-VALUE = 6.11e-05 E-VALUE = 0.0036
DIAGRAM: 55-[1]-12
[1]
5.4e-07
WNNVEEQNDPTAHAEMIAIR
+ + + + +
1 LEWPEYFMAVAFLSAQRSKDPNSQVGACIVNSENKIVGIGYNGMPNGCSDDVLPWRRTAENKLDTKYPYVCHAEL
EACRRLNNYQLDDCDLYVTCQPCMMCCGAI
+ + ++ ++ ++ + ++ ++ +
76 NAIMNKNSTDVKGCSMYVALFPCNECAKLIIQAGIKEVIFMS
TAD2_YEAST/1-107
LENGTH = 107 COMBINED P-VALUE = 1.05e-04 E-VALUE = 0.0062
DIAGRAM: 45-[1]-12
[1]
1.2e-07
WNNVEEQNDPTAHAEMIAIREACRRLNNYQ
+ + + + +
1 MQHIKHMRTAVRLARYALDHDETPVACIFVHTPTGQVMAYGMNDTNKSLTGVAHAEFMGIDQIKAMLGSRGVVDV
LDDCDLYVTCQPCMMCCGAI
+ +++++ +++++++ ++
76 FKDITLYVTVEPCIMCASALKQLDIGKVVFGC
RIBD_ACTPL/12-112
LENGTH = 101 COMBINED P-VALUE = 1.12e-04 E-VALUE = 0.0066
DIAGRAM: 24-[2]-66
[2]
2.0e-07
EVPVGAVVVKD
+++++ ++++
1 TMTDLDYMRRAIALAKQGLGWTNPNPLVGCVIVKNGEIVAEGYHEKIGGWHAERNAVLHCKEDLSGATAYVTLEP
O28510_ARCFU/4-125
LENGTH = 122 COMBINED P-VALUE = 1.77e-04 E-VALUE = 0.01
DIAGRAM: 21-[2]-90
[2]
7.3e-07
EVPVGAVVVKD
++++++++
1 PTLDEYFMEIASVVAKRSTCLRQHVGAVIVKDKRILATGYNGAPSGLPHCEEVGCLRDRMSVPSGERQELCRGVH
O41078_PBCV1/1-114
LENGTH = 114 COMBINED P-VALUE = 3.55e-04 E-VALUE = 0.021
DIAGRAM: 52-[1]-12
[1]
6.4e-07
WNNVEEQNDPTAHAEMIAIREAC
+ + + +
1 MSKAEKFYSLACYHAQLFSKDPNTKVAALVIDNNNNIASVGYNGLPRGFEETSDRWEKPMKYNYVVHAEANAIAT
RRLNNYQLDDCDLYVTCQPCMMCCGAI
+ +++++ + +++ ++ ++ +
76 AARNGVRLDGCSIITTLFPCKECSKLIIQSGIRKVITSK
RIBD_HAEIN/5-105
LENGTH = 101 COMBINED P-VALUE = 5.62e-04 E-VALUE = 0.033
DIAGRAM: 24-[2]-66
[2]
3.2e-06
EVPVGAVVVKD
++ ++ ++++
1 SSQDCVFMQRALDLAAKGQYTTTPNPSVGCVLVKNGEIVGEGFHFKAGQPHAERVALAQAGENAKGATAYVTLEP
O74069_CENSM/15-142
LENGTH = 128 COMBINED P-VALUE = 5.86e-04 E-VALUE = 0.035
DIAGRAM: 21-[2]-9-[1]-37
[2] [1]
1.4e-05 9.9e-05
EVPVGAVVVKD WNNVEEQNDPTAHAEMIAIREACRRLNNYQLDDC
++++++ + ++ + + + ++ + ++ +
1 PTWDEYFMLQAELAKLRSNCIVRKVGAVIVRDHRQLATGYNGTPPGVKNCYEGGCERCAERIEGRIKSGEALDRC
DLYVTCQPCMMCCGAI
++ ++ +
76 LCNHAEANAIMHCAILGIGAGGGGATMYTTFSPCLECTKMAVTIGIRRFVCLD
O59259_PYRHO/20-133
LENGTH = 114 COMBINED P-VALUE = 8.27e-04 E-VALUE = 0.049
DIAGRAM: 21-[2]-82
[2]
1.3e-05
EVPVGAVVVKD
++++ +++
1 PTKDEYFMLIAKLVSLRATCPRLRVGAVAVKDGYILATGYNGAPRNMDHCIDVGCIMVDGHCHRAVHAEQNVIAM
RIB2_SCHPO/255-361
LENGTH = 107 COMBINED P-VALUE = 1.03e-03 E-VALUE = 0.061
DIAGRAM: 38-[1]-19
[1]
1.6e-05
WNNVEEQNDPTAHAEMIAIREACRRLNNYQLDDCDLY
+++ ++ + + +++ + +
1 PYNHEEYMLKALNEAKKCEPTDSAFCVGAVIVQNGKIVSTGYSRERPGNTHAEECAIEKFMLKNPTDSLEGAIMY
VTCQPCMMCCGAI
+ +++ +
76 STMEPCSKRLSKKVSCTDLIVKQKFSTVVLGS
TAD3_YEAST/164-273
LENGTH = 110 COMBINED P-VALUE = 1.07e-03 E-VALUE = 0.063
DIAGRAM: 48-[1]-12
[1]
7.7e-06
WNNVEEQNDPTAHAEMIAIREACRRLN
+ +
1 RNELSRASTLSVKMATAGKQFPMVSVFVDPSRKKDKVVAEDGRNCENSLPIDHSVMVGIRAVGERLREGVDEDAN
NYQLDDCDLYVTCQPCMMCCGAI
++ +++ + + +++ +++ ++
76 SYLCLDYDVYLTHEPCSMCSMALIHSRVRRVVFLT
RIBD_SYNY3/1-101
LENGTH = 101 COMBINED P-VALUE = 1.92e-03 E-VALUE = 0.11
DIAGRAM: 24-[2]-66
[2]
4.4e-06
EVPVGAVVVKD
+++++ +++
1 MISDQTHMRRCLTLAKTAIGKTAPNPLVGSVIVQGDEIVGQGFHPQAGQPHGEIFALWEAGDRAKGATLYVNLEP
O05791_MYCTU/18-114
LENGTH = 97 COMBINED P-VALUE = 3.45e-03 E-VALUE = 0.2
DIAGRAM: 37-[1]-10
[1]
8.8e-05
WNNVEEQNDPTAHAEMIAIREACRRLNNYQLDDCDLYV
+ ++ + ++++ ++ + + +
1 ADIIEAAMELAIDTARHATAPFGAALLDVTTLRAFSGGNTYFESGDRFAHAETNVLRAAMSTLPELSNHVLISTA
TCQPCMMCCGAI
+ + +
76 EPCPMCAAASVLSGVRAIIFGT
RIBD_CHLTR/5-105
LENGTH = 101 COMBINED P-VALUE = 3.60e-03 E-VALUE = 0.21
DIAGRAM: 24-[2]-66
[2]
2.0e-06
EVPVGAVVVKD
++ ++ ++++
1 SEQQLFFMRKAVALGEKGRIFAPPNPWVGCVIVKNGCVIGEGWHQGIGSPHAEVCAVQDQKCSLEGAEVFVTLEP
Q22922_CAEEL/9-114
LENGTH = 106 COMBINED P-VALUE = 3.76e-03 E-VALUE = 0.22
DIAGRAM: 23-[2]-72
[2]
3.0e-05
EVPVGAVVVKD
+ +++ ++ +
1 TEFEQQLVDKAIGAMENAYCKYSNFKVGAALVCDDGEIIIGANHENASYGATICAERSAIVTALTKGHRKFKYIV
Q52724_RHOCO/26-124
LENGTH = 99 COMBINED P-VALUE = 8.52e-03 E-VALUE = 0.5
DIAGRAM: 40-[1]-9
[1]
3.2e-05
WNNVEEQNDPTAHAEMIAIREACRRLNNYQLDDCD
++ + +++ + + + + +++ +
1 YAAETAMLAVALEEAHIGLAEGASDWRSIFTLDGELVSRGHNQRIQDNDPSSHGETDAFRNAGRHTTWRDKILVT
LYVTCQPCMMCCGAI
+ +
76 TLAPCWYCTGMVRQFGFAKVVMGE
DCTD_YEAST/161-279
LENGTH = 119 COMBINED P-VALUE = 8.84e-03 E-VALUE = 0.52
DIAGRAM: 119
CDD_HAEIN/46-148
LENGTH = 103 COMBINED P-VALUE = 1.76e-02 E-VALUE = 1
DIAGRAM: 43-[1]-10
[1]
5.1e-05
WNNVEEQNDPTAHAEMIAIREACRRLNNYQLD
+ + + +++ ++ + + +
1 LTTLKLAMHLLPLAASYSHTAISHFNVGAIAIGEQGDFYFGANQEFANSAIQQTIHAEQSAISHAWLRNERRISD
DCDLYVTCQPCMMCCGAI
++ + + +
76 MVVNYTPCGHCRQFMNELHGAEKISIHL
O26035_HELPY/1-131
LENGTH = 131 COMBINED P-VALUE = 1.90e-02 E-VALUE = 1.1
DIAGRAM: 39-[1]-42
[1]
5.2e-05
WNNVEEQNDPTAHAEMIAIREACRRLNNYQLDDCDL
+ ++ + ++++++ + + + ++ +
1 MRLYESLLEMCLNKAWEHQTLALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAQSALKILRPSLKNDLEK
YVTCQPCMMCCGAI
+
76 LEDPKTLSDFLKTHHDNAFTDCVFLITLEPCNSYGKTPACSELLEILKPKRVVIAT
Q20628_CAEEL/9-114
LENGTH = 106 COMBINED P-VALUE = 1.91e-02 E-VALUE = 1.1
DIAGRAM: 106
CDD_SCHPO/3-107
LENGTH = 105 COMBINED P-VALUE = 2.10e-02 E-VALUE = 1.2
DIAGRAM: 23-[2]-71
[2]
1.7e-05
EVPVGAVVVKD
+ +++ ++ +
1 KEDIEKLFQEVKKSLQYSYCPYSNFAVGACVVSDDKNTYIYGANVENASYGNCICAERVAITKAVSMGYTKFMAI
DCTD_SCHPO/198-318
LENGTH = 121 COMBINED P-VALUE = 2.61e-02 E-VALUE = 1.5
DIAGRAM: 121
COMEB_BACSU/4-117
LENGTH = 114 COMBINED P-VALUE = 2.79e-02 E-VALUE = 1.6
DIAGRAM: 114
BSR_BACCE/8-117
LENGTH = 110 COMBINED P-VALUE = 3.35e-02 E-VALUE = 2
DIAGRAM: 110
O65896_ARATH/22-124
LENGTH = 103 COMBINED P-VALUE = 4.09e-02 E-VALUE = 2.4
DIAGRAM: 40-[1]-13
[1]
5.7e-05
WNNVEEQNDPTAHAEMIAIREACRRLNNYQLDDCD
+++ + ++ + ++ +
1 VSVIQLLPSLVKPAQSYARTPISKFNVAVVGLGSSGRIFLGVNVEFPNLPLHHSIHAEQFLVTNLTLNGERHLNF
LYVTCQPCMMCCGAI
++ ++ + +
76 FAVSAAPCGHCRQFLQEIRDAPEIKILI
RIB2_YEAST/432-543
LENGTH = 112 COMBINED P-VALUE = 4.15e-02 E-VALUE = 2.4
DIAGRAM: 112
CDD_HUMAN/12-117
LENGTH = 106 COMBINED P-VALUE = 4.98e-02 E-VALUE = 2.9
DIAGRAM: 106
O83298_TREPA/11-133
LENGTH = 123 COMBINED P-VALUE = 6.54e-02 E-VALUE = 3.9
DIAGRAM: 123
CDD_BACSU/1-105
LENGTH = 105 COMBINED P-VALUE = 1.38e-01 E-VALUE = 8.2
DIAGRAM: 105
Debugging Information
CPU: kodomo.fbb.msu.ru
Time 0.012000 secs.
mast ./memeout.txt -d ./PF00383_seed.fasta -ev 10.000000 -mt 0.000100
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Links to Entrez database at NCBI
Links to sequence scores (section I)
Links to motif diagrams (section II)
Links to sequence/motif annotated alignments (section III)
This information