TBLASTN 2.2.25+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: lm_genome.fasta
           12 sequences; 2,945,078 total letters



Query= 1WKQ:A|PDBID|CHAIN|SEQUENCE

Length=164
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  embl|AL591984|AL591984 Listeria monocytogenes strain EGD, compl...  79.7    1e-16


> embl|AL591984|AL591984 Listeria monocytogenes strain EGD, complete 
genome, segment 12/12 
Length=225528

 Score = 79.7 bits (195),  Expect = 1e-16, Method: Compositional matrix adjust.
 Identities = 42/98 (43%), Positives = 54/98 (56%), Gaps = 6/98 (6%)
 Frame = -3

Query  33     PFGAVIVKDGAIIAEGQNNVTTSNDPTAHAEVTAIRKACKVLGAYQLDDCILYTSCEPCP  92
              P GAV+V DG II    N   TS +   HAE+ AI+ ACK   +++L    LY + EPCP
Sbjct  76156  PIGAVVVLDGEIIGRAHNLRETSQNAVTHAELLAIQDACKHQNSWRLSGAELYVTLEPCP  75977

Query  93     MCLGAIYWARPKAVFYAAEHTDAAEAGF------DDSF  124
              MC GAI  +R + V+Y A+   A  AG       DD F
Sbjct  75976  MCSGAILLSRIEKVYYGAKDPKAGTAGSLMNLLQDDRF  75863



Lambda     K      H
   0.320    0.134    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 85326816


Query= 1WKQ:B|PDBID|CHAIN|SEQUENCE

Length=164
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  embl|AL591984|AL591984 Listeria monocytogenes strain EGD, compl...  79.7    1e-16


> embl|AL591984|AL591984 Listeria monocytogenes strain EGD, complete 
genome, segment 12/12 
Length=225528

 Score = 79.7 bits (195),  Expect = 1e-16, Method: Compositional matrix adjust.
 Identities = 42/98 (43%), Positives = 54/98 (56%), Gaps = 6/98 (6%)
 Frame = -3

Query  33     PFGAVIVKDGAIIAEGQNNVTTSNDPTAHAEVTAIRKACKVLGAYQLDDCILYTSCEPCP  92
              P GAV+V DG II    N   TS +   HAE+ AI+ ACK   +++L    LY + EPCP
Sbjct  76156  PIGAVVVLDGEIIGRAHNLRETSQNAVTHAELLAIQDACKHQNSWRLSGAELYVTLEPCP  75977

Query  93     MCLGAIYWARPKAVFYAAEHTDAAEAGF------DDSF  124
              MC GAI  +R + V+Y A+   A  AG       DD F
Sbjct  75976  MCSGAILLSRIEKVYYGAKDPKAGTAGSLMNLLQDDRF  75863



Lambda     K      H
   0.320    0.134    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 85326816


  Database: lm_genome.fasta
    Posted date:  Dec 9, 2012  3:21 PM
  Number of letters in database: 2,945,078
  Number of sequences in database:  12



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40