TBLASTN 2.2.25+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: bl_genome.fasta
           1 sequences; 4,222,645 total letters



Query= dacc_bacsu

Length=491
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  embl|AE017333|AE017333 Bacillus licheniformis DSM 13, complete ...   505    3e-144


> embl|AE017333|AE017333 Bacillus licheniformis DSM 13, complete 
genome. 
Length=4222645

 Score =  505 bits (1301),  Expect = 3e-144, Method: Compositional matrix adjust.
 Identities = 280/463 (61%), Positives = 372/463 (81%), Gaps = 0/463 (0%)
 Frame = -3

Query  28       LAAEKQDALSGQIDKILADHPALEGAMAGITVRSAETGAVLYEHSGDTRMRPasslkllt  87
                L AE++  L  QID++L   P L+GA+AGI+VRSAE+G ++Y H GDTRMRPAS+LKLLT
Sbjct  2081981  LGAEEKGGLKEQIDQLLKTEPDLKGALAGISVRSAESGKMIYGHMGDTRMRPASNLKLLT  2081802

Query  88       aaaalsvlGENYSFTTEVRTDGTlkgkklngnlylkgkgDPTLLPSDFDKMAEILKHSGV  147
                AAAA SVLGE+Y+F TEV  DG      L G+LY+KGKGDPTLL +DF +MA+ L+  G+
Sbjct  2081801  AAAAYSVLGEDYTFPTEVMADGARAAGTLKGSLYIKGKGDPTLLTADFQQMAKALRKQGI  2081622

Query  148      KVIKGNLIGDDTWHDDMRLSPDMPWSDEYTYYGAPISALTASPNEDYDAGTVIVEVTPNQ  207
                 VI+G+L+GDD+W+D++R S D+ W+DE  YYGA ISALT SPNEDYDAGTVI++V P  
Sbjct  2081621  TVIRGDLVGDDSWYDEIRYSQDLSWTDEDAYYGAQISALTVSPNEDYDAGTVIIDVNPAG  2081442

Query  208      KEGEEPAVSVSPKTDYITIKNDAKTTAAGSEKDLTIEREHGTNTITIEGSVPVDANKTKE  267
                K G++PAV ++P+T+++ IKNDAKT AA  +KD+TI+R+HG NTI I+G++P  A++ ++
Sbjct  2081441  KTGKKPAVLLTPQTNHVKIKNDAKTVAADGKKDITIKRKHGGNTIQIKGTIPQGASRVRQ  2081262

Query  268      WISVWEPAGYALDLFKQSLKKQGITVKGDIKTGEAPSSSDVLLSHRSMPLSKLFVPFMKL  327
                W++VWEP+ YALDLFKQ+L +QGI + G  K G+AP ++  + +H+SMPLS+L +PFMKL
Sbjct  2081261  WVAVWEPSEYALDLFKQALHQQGIRILGKTKIGKAPKTAHRITTHQSMPLSELMIPFMKL  2081082

Query  328      SNNGHAevlvkemgkvkkgegSWEKGLEVLNSTLPEFGVDSKSLVLRDGSGISHIDAVSS  387
                SNNGH E L+KEMG+  + EGSW++GLEVLN+ L  FG+D++ +VLRDGSGISHI+ +S+
Sbjct  2081081  SNNGHGETLIKEMGRAARREGSWDQGLEVLNTELQRFGLDTEKIVLRDGSGISHINLISA  2080902

Query  388      DQLSQLLYDIQDQSWFSAYLNSLPVAGNPDRMVGGTLRNRMKGTPAQGKVRAKtgslstv  447
                 Q+++LLY +QD+ WF ++  SLPVAG  DRMVGGTLRNR+K    +GKVRAKTGSLSTV
Sbjct  2080901  HQITKLLYSVQDEKWFPSFARSLPVAGESDRMVGGTLRNRLKDPALKGKVRAKTGSLSTV  2080722

Query  448      sslsgYAETKSGKKLVFSILLNGLIDEEDGKDIEDQIAVILAN  490
                SSLSGY +T SGK L+FSILLN L+D+E GKDIED+I  ILA+
Sbjct  2080721  SSLSGYVDTASGKTLIFSILLNQLVDDEKGKDIEDKIVQILAS  2080593



Lambda     K      H
   0.311    0.130    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 564390658


  Database: bl_genome.fasta
    Posted date:  Oct 21, 2012  3:07 PM
  Number of letters in database: 4,222,645
  Number of sequences in database:  1



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40