BLASTN 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: lm_genome.fasta 12 sequences; 2,945,078 total letters Query= BAA21609 BAA21609.1 Bacillus subtilis hypothetical protein Length=1464 Score E Sequences producing significant alignments: (Bits) Value embl|AL591975|AL591975 Listeria monocytogenes strain EGD, compl... 884 0.0 > embl|AL591975|AL591975 Listeria monocytogenes strain EGD, complete genome, segment 3/12 Length=280050 Score = 884 bits (980), Expect = 0.0 Identities = 1072/1453 (74%), Gaps = 20/1453 (1%) Strand=Plus/Plus Query 1 ATGGCAGAAATCAGAAAATTAAAAAACTACATCAACGGTGAATGGGTTGAAAGCAAAACA 60 |||||||| | | |||||||| || || || |||| |||||||| || || || ||| Sbjct 46637 ATGGCAGATGTACGGAAATTAAAGAATTATATTGACGGCGAATGGGTCGAGAGTAAGACA 46696 Query 61 GATCAATATGAAGATGTCGTCAATCCGGCGACGAAAGAAGTGCTATGCCAAGTGCCGATT 120 ||| |||||||||||||| |||||||||||||| |||||||| |||||||||||||| Sbjct 46697 GATAAATATGAAGATGTCATCAATCCGGCGACGGGTGAAGTGCTGTGCCAAGTGCCGATA 46756 Query 121 TCTACAAAAGAGGATATTGATTACGCAGCGCAAACAGCGGCTGAAGCATTTAAAACATGG 180 || ||| | || | ||| | || || | || | |||| ||| ||| |||| Sbjct 46757 TCGACACGCGCAGAATTAGATCAGGCCGCTGTCATTGCAGAACAAGCTTTTGAAAAATGG 46816 Query 181 TCAAAGGTGGCGGTTCCTCGCCGCGCCAGAATTCTATTTAACTTCCAGCAGCTGCTGTCT 240 | || || || || | ||||| | | |||| ||||| ||| | || | Sbjct 46817 AGCCAAGTTGCTGTGCCAAGACGCGCGCGCGTATTATTCGGATTCCAACAGTTACTCATT 46876 Query 241 CAGCATAAAGAAGAACTTGCTCATCTAATTACCATTGAAAACGGAAAAAACACGAAAGAA 300 || |||||||||||||| || ||||||| ||||||| || ||||| ||| Sbjct 46877 CAACATAAAGAAGAACTAGCAAGATTAATTACACTTGAAAATGGTAAAAATTTATCCGAA 46936 Query 301 GCTTTAGGTGAAGTGGGACGCGGGATTGAAAACGTAGAGTTCGCCGCTGGAGCACCTTCC 360 || ||||||||| |||||| || ||||| || || ||||| || |||||||| | Sbjct 46937 GCACGCGGTGAAGTGCAACGCGGAATAGAAAATGTCGAATTCGCAGCCGGAGCACCAACG 46996 Query 361 CTGATGATGGGTGACTCACTTGCTTCCATCGCAACGGACGTTGAAGCGGCGAACTACCGT 420 |||||||||||||| || |||||||| || ||||||||||| |||||||| || || || Sbjct 46997 CTGATGATGGGTGATTCGCTTGCTTCGATTGCAACGGACGTGGAAGCGGCTAATTATCGC 47056 Query 421 TACCCAATCGGAGTTGTCGGCGGAATCGCGCCATTCAACTTCCCGATGATGGTTCCTTGC 480 || || |||||||||| || ||||| |||||||| ||||| ||||||||||||||||| Sbjct 47057 TATCCGGTCGGAGTTGTTGGTGGAATTGCGCCATTTAACTTTCCGATGATGGTTCCTTGT 47116 Query 481 TGGATGTTCCCGATGGCGATCGCGCTCGGCAACACATTTATTTTAAAGCCATCTGAGCGG 540 ||||||||||| ||||| |||||||| || ||| | ||||||||||| |||||||| | Sbjct 47117 TGGATGTTCCCAATGGCCATCGCGCTTGGTAACTCGTTTATTTTAAAACCATCTGAAAGA 47176 Query 541 ACTCCGCTGTTAACAGAGAAATTGGTTGAGCTTTTTGAAAAAGCGGGCCTTCCGAAAGGG 600 || ||||| || | ||||||||||| || | ||| ||||||| ||||| ||||| Sbjct 47177 ACGCCGCTTTTGATGGAGAAATTGGTGGAATTATTTTCTGAAGCGGGTCTTCCAAAAGGT 47236 Query 601 GTGTTCAACGTCGTATACGGTGCGCATGACGTTGTGAACGGCATCCTCGAGCATCCCGA- 659 || ||||| || || |||||||||||||| || || || || || | || | ||| Sbjct 47237 GTATTCAATGTAGTGTACGGTGCGCATGATGTGGTTAATGGGATTTTAGAAAA---CGAA 47293 Query 660 --AATTAAAGCGATTTCATTTGTAGGCTCCAAGCCAGTAGGCGAATACGTCTACAAAAAA 717 |||||||||| |||| ||||| || || |||||||| |||||||| || ||||||| Sbjct 47294 ATAATTAAAGCGGTTTCTTTTGTTGGTTCTAAGCCAGTTGGCGAATATGTATACAAAACT 47353 Query 718 GGAAGCGAAAACTTAAAACGCGTTCAATCTCTGACTGGCGCGAAAAACCATACGATTGTC 777 || |||| || || ||||| || || || |||| ||||||||||||||||| ||||| Sbjct 47354 GGGAGCGCGAATTTGAAACGTGTGCAGGCTTTGACGGGCGCGAAAAACCATACAATTGTG 47413 Query 778 TTGAACGATGCGAATCTTGAAGACACGGTTACAAACATCGTTGGAGCTGCCTTCGGTTCT 837 | || |||||| || | ||||| || || || || | || ||| || || || || Sbjct 47414 CTTAATGATGCGGATTTAGAAGATACAGTCACGAATGTTATTTCAGCGGCATTTGGGTCA 47473 Query 838 GCCGGTGAACGCTGCATGGCTTGTGCGGTTGTGACAGTTGAAGAAGGAATCGCCGATGAA 897 || || ||||| |||||||| || |||||||| || || |||||||||||||| || || Sbjct 47474 GCTGGCGAACGTTGCATGGCGTGCGCGGTTGTCACTGTGGAAGAAGGAATCGCAGACGAG 47533 Query 898 TTTATGGCGAAGCTGCAGGAAAAAGTGGCGGACA---TTAAAATCGGTAACGGCCTTGAT 954 ||| | | | || | | | || ||| | | | ||||| || ||||| || || Sbjct 47534 TTTTTAGAGGCACTTCGG---ACAGCGGCACAAAATGTGAAAATTGGAAACGGGCTAGAC 47590 Query 955 GACGGCGTGTTCTTAGGACCGGTGATTCGCGAAGACAACAAGAAGCGCACGCTCAGCTAT 1014 || || || ||| |||| ||||| ||||||||||| || | || |||||| | ||| Sbjct 47591 GATGGTGTTTTCCTAGGTCCGGTAATTCGCGAAGAAAATCAAAAACGCACGATTGCTTAT 47650 Query 1015 ATCGAAAAAGGTCTTGAAGAAGGTGCCAGACT---CGTATGTGACGGACGTGAAAATGTG 1071 || |||||||| | |||||||| || | | | ||| || || || || | || | Sbjct 47651 ATTGAAAAAGGCATAGAAGAAGGCGCGAAATTAACGGTA---GATGGCCGGGAGACTG-G 47706 Query 1072 TCTGAC-GACGGCTACTTTGTCGGCCCGACGATCTTTGACAATGTCACAACAGAAATGAC 1130 || | || ||| | ||||| || ||||| || || || | || || || || ||||| Sbjct 47707 ACTTTCTGAAGGCCATTTTGTTGGACCGACAATTTTGGAAGACGTTACGACGGATATGAC 47766 Query 1131 GATCTGGAAAGATGAAATTTTCGCTCCGGTCTTATCTGTCATCCGTGTGAAAAACCTGAA 1190 || |||||||| || |||||||| || || ||||| || || ||||||||||| || | Sbjct 47767 AATTTGGAAAGACGAGATTTTCGCACCAGTTTTATCCGTGATTCGTGTGAAAAATCTCCA 47826 Query 1191 AGAAGCGATTGAAATCGCCAATAAGTCTGAGTTTGCGAACGGCGCCTGCTTGTTCACATC 1250 |||||| || | || ||| | ||||| |||||||| ||||| || | |||||| Sbjct 47827 AGAAGCAGTTCGGGTGGCGAATCAATCTGAATTTGCGAATGGCGCTTGTATTTTCACAAA 47886 Query 1251 CAACTCAAACGCAATCCGCTACTTCCGTGAAAACATTGATGCGGGAATGCTAGGCATCAA 1310 || | || ||||| |||||||| | ||||| |||||||| |||||||| || | || Sbjct 47887 TAATGCCAAAGCAATTCGCTACTTTAGAGAAAAAATTGATGCTGGAATGCTTGGTGTGAA 47946 Query 1311 CCTTGGTGTGCCGGCTCCAATGGCGTTCTTCCCATTCTCAGGCTGGAAATCTTCATTCTT 1370 | || || || |||||||||||||| ||||| || || || |||||||| || || | Sbjct 47947 TTTGGGCGTACCTGCTCCAATGGCGTTTTTCCCGTTTTCTGGTTGGAAATCATCCTTTTA 48006 Query 1371 TGGAACGCTGCATGCGAACGGAAAAGACAGCGTCGACTTCTATACACGTAAAAAAGTGGT 1430 ||||||||| ||||| ||||| ||||||||||| || || || |||| ||||||||| || Sbjct 48007 TGGAACGCTTCATGCAAACGGCAAAGACAGCGTAGATTTTTACACACATAAAAAAGTAGT 48066 Query 1431 GACGGCAAGATAT 1443 || || |||||| Sbjct 48067 TACTGCGAGATAT 48079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4237535542 Database: lm_genome.fasta Posted date: Nov 18, 2012 10:02 PM Number of letters in database: 2,945,078 Number of sequences in database: 12 Matrix: blastn matrix 2 -3 Gap Penalties: Existence: 5, Extension: 2