RID: 34TKKF2M016 Job Title:Ribonuclease H O93209 593..748 Program: BLASTP Query: Ribonuclease H O93209 593..748 ID: lcl|Query_215390(amino acid) Length: 156 Database: swissprot Non-redundant UniProtKB/SwissProt sequences Sequences producing significant alignments: Scientific Common Max Total Query E Per. Acc. Description Name Name Taxid Score Score cover Value Ident Len Accession RecName: Full=Pro-Pol polyprotein; AltName: Full=Pr125Pol;... Feline foamy... NA 53182 327 327 100% 7e-105 100.00 1156 O93209.1 RecName: Full=Pro-Pol polyprotein; AltName: Full=Pr125Pol;... Macaque simi... NA 338478 176 176 100% 1e-50 55.70 1149 P23074.3 RecName: Full=Pro-Pol polyprotein; AltName: Full=Pr125Pol;... Pan troglody... NA 298339 175 175 99% 3e-50 57.69 1146 Q87040.1 RecName: Full=Pro-Pol polyprotein; AltName: Full=Pr125Pol;... Simian foamy... NA 11644 174 174 100% 5e-50 55.77 1143 P27401.2 RecName: Full=Pro-Pol polyprotein; AltName: Full=Pr125Pol;... Human spumar... NA 11963 165 165 100% 1e-46 56.41 1143 P14350.2 RecName: Full=Ribonuclease H; Short=RNase H [Pseudoalteromonas... Pseudoaltero... NA 326442 54.7 54.7 97% 7e-09 26.97 154 Q3IIS1.1 RecName: Full=Ribonuclease H; Short=RNase H [Lachnoclostridium... Lachnoclostr... NA 357809 52.4 52.4 97% 6e-08 31.01 158 A9KLJ9.1 RecName: Full=Ribonuclease H; Short=RNase H [Ralstonia... Ralstonia ps... NA 267608 48.1 48.1 72% 2e-06 30.09 151 Q8XZ91.1 RecName: Full=Ribonuclease H; Short=RNase H [Campylobacter... Campylobacte... NA 360105 47.4 47.4 74% 3e-06 29.31 149 A7H185.1 RecName: Full=Ribonuclease H; Short=RNase H [Paraglaciecola sp... Paraglacieco... NA 3042615 45.8 45.8 97% 2e-05 28.95 153 Q15TA7.1 RecName: Full=Ribonuclease H; Short=RNase H [Roseobacter... Roseobacter ... NA 375451 45.1 45.1 99% 3e-05 30.77 150 Q16AK0.1 RecName: Full=Ribonuclease H; Short=RNase H [Ruegeria pomeroyi... Ruegeria pom... NA 246200 43.5 43.5 95% 8e-05 29.73 155 Q5LNJ2.1 RecName: Full=Ribonuclease H; Short=RNase H [Coxiella burnetii... Coxiella bur... NA 360115 43.5 43.5 99% 9e-05 27.56 154 A9NB52.1 RecName: Full=Ribonuclease H; Short=RNase H [Coxiella burnetii... Coxiella bur... NA 434922 43.5 43.5 99% 9e-05 27.56 154 A9KGQ0.1 RecName: Full=Ribonuclease H; Short=RNase H [Coxiella burnetii... Coxiella bur... NA 434924 43.5 43.5 99% 1e-04 27.56 154 B6J5V1.1 RecName: Full=Ribonuclease H; Short=RNase H [Dechloromonas... Dechloromona... NA 159087 42.7 42.7 42% 2e-04 42.42 148 Q47FN9.1 RecName: Full=Ribonuclease H; Short=RNase H [Nitrosomonas... Nitrosomonas... NA 228410 42.7 42.7 74% 2e-04 33.61 161 Q82XV8.1 RecName: Full=Ribonuclease H; Short=RNase H [Pectobacterium... Pectobacteri... NA 561230 42.4 42.4 71% 3e-04 27.35 154 C6DC65.1 RecName: Full=Ribonuclease H; Short=RNase H [Vibrio vulnificus... Vibrio vulni... NA 196600 42.0 42.0 97% 3e-04 24.52 155 Q7MII6.1 RecName: Full=Ribonuclease H; Short=RNase H [Bordetella avium... Bordetella a... NA 360910 42.0 42.0 67% 3e-04 32.38 153 Q2KV56.1 RecName: Full=Ribonuclease H; Short=RNase H [Cereibacter... Cereibacter ... NA 349102 42.0 42.0 100% 4e-04 28.05 151 A4WNV1.1 RecName: Full=Ribonuclease H; Short=RNase H [Zymomonas mobilis... Zymomonas mo... NA 264203 41.6 41.6 67% 5e-04 32.38 156 O69014.1 RecName: Full=Ribonuclease H; Short=RNase H [Idiomarina... Idiomarina l... NA 283942 41.2 41.2 72% 7e-04 23.89 157 Q5QZL3.1 RecName: Full=Ribonuclease HI; Short=RNase HI [Vibrio... Vibrio parah... NA 223926 41.2 41.2 97% 7e-04 24.52 154 Q87MG2.1 RecName: Full=Ribonuclease H; Short=RNase H [Bradyrhizobium sp... Bradyrhizobi... NA 288000 40.8 40.8 95% 8e-04 29.53 154 A5EAL2.1 RecName: Full=Ribonuclease H; Short=RNase H [Citrobacter koser... Citrobacter ... NA 290338 40.8 40.8 71% 9e-04 24.32 155 A8AKR0.1 RecName: Full=Ribonuclease H; Short=RNase H [Pectobacterium... Pectobacteri... NA 218491 40.8 40.8 71% 0.001 28.21 154 Q6D1V7.1 RecName: Full=Ribonuclease H; Short=RNase H [Bradyrhizobium... Bradyrhizobi... NA 224911 40.8 40.8 99% 0.001 28.66 154 Q89UU3.1 RecName: Full=Ribonuclease H; Short=RNase H [Vibrio cholerae... Vibrio chole... NA 345073 40.8 40.8 97% 0.001 24.36 156 A5F633.1 RecName: Full=Ribonuclease H; Short=RNase H [Enterobacter sp.... Enterobacter... NA 399742 40.4 40.4 71% 0.001 23.42 155 A4W6V4.1 RecName: Full=Ribonuclease H; Short=RNase H [Cereibacter... Cereibacter ... NA 349101 40.4 40.4 100% 0.001 27.44 151 A3PMR3.1 RecName: Full=Ribonuclease H; Short=RNase H [Parvibaculum... Parvibaculum... NA 402881 40.4 40.4 97% 0.001 28.48 150 A7HQX4.1 RecName: Full=Ribonuclease H; Short=RNase H [Ruegeria sp. TM1040] Ruegeria sp.... NA 292414 40.4 40.4 99% 0.001 29.49 157 Q1GDG1.1 RecName: Full=Ribonuclease H; Short=RNase H [Jannaschia sp. CCS1] Jannaschia s... NA 290400 40.4 40.4 99% 0.001 26.11 157 Q28V43.1 RecName: Full=Ribonuclease H; Short=RNase H [Phenylobacterium... Phenylobacte... NA 450851 40.0 40.0 83% 0.001 28.46 153 B4R8T3.1 RecName: Full=Ribonuclease H; Short=RNase H... Paramagnetos... NA 342108 40.0 40.0 71% 0.001 27.93 154 Q2W9A9.1 RecName: Full=Ribonuclease H; Short=RNase H [Salmonella enteri... Salmonella e... NA 476213 40.0 40.0 71% 0.002 23.42 155 C0Q6N2.1 RecName: Full=Ribonuclease H; Short=RNase H [Legionella... Legionella p... NA 400673 39.7 39.7 73% 0.002 25.22 143 A5IBM5.1 RecName: Full=Ribonuclease H; Short=RNase H [Salmonella enteri... Salmonella e... NA 41514 40.0 40.0 71% 0.002 23.42 155 A9MPF1.1 RecName: Full=Ribonuclease H; Short=RNase H [Nitrosomonas... Nitrosomonas... NA 335283 40.0 40.0 51% 0.002 36.71 162 Q0AE34.1 RecName: Full=Ribonuclease H; Short=RNase H [Cupriavidus... Cupriavidus ... NA 264198 39.7 39.7 86% 0.002 25.00 145 Q46Z81.1 RecName: Full=Ribonuclease H; Short=RNase H [Vibrio campbellii... Vibrio campb... NA 2902295 39.7 39.7 97% 0.003 24.36 154 A7MY21.1 RecName: Full=Ribonuclease H; Short=RNase H [Erwinia... Erwinia tasm... NA 465817 39.3 39.3 71% 0.003 25.66 155 B2VHJ5.1 RecName: Full=Ribonuclease H; Short=RNase H [Legionella... Legionella p... NA 297245 39.3 39.3 73% 0.003 25.22 143 Q5WWW5.1 RecName: Full=Ribonuclease H; Short=RNase H [Sodalis... Sodalis glos... NA 343509 39.3 39.3 97% 0.003 27.33 163 Q2NVF9.1 RecName: Full=Ribonuclease H; Short=RNase H [Marinobacter... Marinobacter... NA 351348 39.3 39.3 97% 0.003 27.39 147 A1U0U9.1 RecName: Full=Ribonuclease H; Short=RNase H [Saccharopolyspora... Saccharopoly... NA 405948 38.9 38.9 71% 0.004 25.23 155 A4FMU3.1 RecName: Full=Ribonuclease H; Short=RNase H [Cronobacter... Cronobacter ... NA 290339 38.9 38.9 71% 0.004 25.64 158 A7MI34.1 RecName: Full=Ribonuclease H; Short=RNase H [Candidatus... Candidatus V... NA 412965 38.9 38.9 99% 0.004 26.58 148 A5CX29.1 RecName: Full=Ribonuclease H; Short=RNase H [Treponema pallidu... Treponema pa... NA 455434 38.9 38.9 56% 0.004 28.74 169 B2S2V0.1 RecName: Full=Ribonuclease H; Short=RNase H [Klebsiella... Klebsiella p... NA 272620 38.9 38.9 71% 0.005 25.64 155 A6T512.1 RecName: Full=Ribonuclease H; Short=RNase H [Escherichia coli HS] Escherichia ... NA 331112 38.9 38.9 71% 0.005 22.52 155 A7ZWF6.1 RecName: Full=Ribonuclease H; Short=RNase H [Klebsiella... Klebsiella p... NA 507522 38.9 38.9 71% 0.005 25.64 155 B5Y1G2.1 RecName: Full=Ribonuclease H; Short=RNase H [Cupriavidus necat... Cupriavidus ... NA 381666 38.5 38.5 58% 0.006 27.55 145 Q0K8W6.1 RecName: Full=Ribonuclease H; Short=RNase H [Candidatus Ruthia... Candidatus R... NA 413404 38.1 38.1 99% 0.007 27.56 146 A1AW38.1 RecName: Full=Ribonuclease H; Short=RNase H [Paracoccus... Paracoccus d... NA 318586 38.1 38.1 99% 0.007 27.56 155 A1B840.1 RecName: Full=Ribonuclease H; Short=RNase H [Cupriavidus... Cupriavidus ... NA 266264 38.1 38.1 62% 0.008 24.27 145 Q1LL89.1 RecName: Full=Ribonuclease H; Short=RNase H [Escherichia coli... Escherichia ... NA 331111 38.1 38.1 71% 0.008 22.52 155 A7ZHV1.1 RecName: Full=Ribonuclease H; Short=RNase H [Nitrobacter... Nitrobacter ... NA 323097 38.1 38.1 69% 0.009 32.11 151 Q1QH30.1 RecName: Full=Ribonuclease H; Short=RNase H [Bordetella... Bordetella p... NA 257313 37.7 37.7 69% 0.010 29.63 155 Q7VRX8.1 RecName: Full=Ribonuclease H; Short=RNase H [Bradyrhizobium sp... Bradyrhizobi... NA 114615 37.7 37.7 95% 0.011 26.32 154 A4Z216.1 RecName: Full=Ribonuclease H; Short=RNase H [Serratia... Serratia pro... NA 399741 37.7 37.7 71% 0.011 26.50 155 A8GA77.1 RecName: Full=Ribonuclease H; Short=RNase H [Bordetella... Bordetella b... NA 257310 37.7 37.7 69% 0.011 25.93 155 Q7WCJ8.1 RecName: Full=Ribonuclease H; Short=RNase H [Yersinia... Yersinia ent... NA 393305 37.7 37.7 71% 0.013 24.79 154 A1JKB1.1 RecName: Full=Ribonuclease H; Short=RNase H [Dinoroseobacter... Dinoroseobac... NA 398580 37.0 37.0 99% 0.019 29.30 157 A8LLC1.1 RecName: Full=Ribonuclease H; Short=RNase H [Yersinia pestis... Yersinia pes... NA 386656 37.0 37.0 71% 0.019 24.79 154 A4TL54.1 RecName: Full=Ribonuclease H; Short=RNase H [Rhodopseudomonas... Rhodopseudom... NA 316058 37.0 37.0 95% 0.021 27.15 161 Q2J0F8.1 RecName: Full=Ribonuclease H; Short=RNase H [Escherichia coli... Escherichia ... NA 574521 36.6 36.6 71% 0.029 22.52 155 B7UJB0.1 RecName: Full=Ribonuclease H; Short=RNase H [Rhodopseudomonas... Rhodopseudom... NA 316057 36.6 36.6 99% 0.032 26.75 150 Q131J2.1 RecName: Full=Ribonuclease H; Short=RNase H [Vibrio atlanticus... Vibrio atlan... NA 575788 36.2 36.2 71% 0.034 23.01 154 B7VIP1.1 RecName: Full=Ribonuclease H; Short=RNase H [Erythrobacter... Erythrobacte... NA 314225 35.8 35.8 97% 0.046 25.00 144 Q2ND39.1 Alignments: >RecName: Full=Pro-Pol polyprotein; AltName: Full=Pr125Pol; Contains: RecName: Full=Protease/Reverse transcriptase/ribonuclease H; AltName: Full=p87Pro-RT-RNaseH; Contains: RecName: Full=Protease/Reverse transcriptase; AltName: Full=p65Pro-RT; Contains: RecName: Full=Ribonuclease H; Short=RNase H; Contains: RecName: Full=Integrase; Short=IN; AltName: Full=p42In [Feline foamy virus] Sequence ID: O93209.1 Length: 1156 Range 1: 593 to 748 Score:327 bits(837), Expect:7e-105, Method:Compositional matrix adjust., Identities:156/156(100%), Positives:156/156(100%), Gaps:0/156(0%) Query 1 YTDGSAITSPTKEGHLNAGMGIVYFINKDGNLQKQQEWSISLGNHTAQFAEIAAFEFALK 60 YTDGSAITSPTKEGHLNAGMGIVYFINKDGNLQKQQEWSISLGNHTAQFAEIAAFEFALK Sbjct 593 YTDGSAITSPTKEGHLNAGMGIVYFINKDGNLQKQQEWSISLGNHTAQFAEIAAFEFALK 652 Query 61 KCLPLGGNILVVTDSNYVAKAYNEELDVWASNGFVNNRKKPLKHISKWKSVADLKRLRPD 120 KCLPLGGNILVVTDSNYVAKAYNEELDVWASNGFVNNRKKPLKHISKWKSVADLKRLRPD Sbjct 653 KCLPLGGNILVVTDSNYVAKAYNEELDVWASNGFVNNRKKPLKHISKWKSVADLKRLRPD 712 Query 121 VVVTHEPGHQKLDSSPHAYGNNLADQLATQASFKVH 156 VVVTHEPGHQKLDSSPHAYGNNLADQLATQASFKVH Sbjct 713 VVVTHEPGHQKLDSSPHAYGNNLADQLATQASFKVH 748 >RecName: Full=Pro-Pol polyprotein; AltName: Full=Pr125Pol; Contains: RecName: Full=Protease/Reverse transcriptase/ribonuclease H; AltName: Full=p87Pro-RT-RNaseH; Contains: RecName: Full=Protease/Reverse transcriptase; AltName: Full=p65Pro-RT; Contains: RecName: Full=Ribonuclease H; Short=RNase H; Contains: RecName: Full=Integrase; Short=IN; AltName: Full=p42In [Macaque simian foamy virus] Sequence ID: P23074.3 Length: 1149 Range 1: 597 to 751 Score:176 bits(446), Expect:1e-50, Method:Compositional matrix adjust., Identities:88/158(56%), Positives:115/158(72%), Gaps:5/158(3%) Query 1 YTDGSAITSPTKEGHLNAGMGI--VYFINKDGNLQKQQEWSISLGNHTAQFAEIAAFEFA 58 YTDGSAI P +AGMGI V FI + + +WSI LG+HTAQ AEIAA EFA Sbjct 597 YTDGSAIKHPDVNKSHSAGMGIAQVQFIPE---YKIVHQWSIPLGDHTAQLAEIAAVEFA 653 Query 59 LKKCLPLGGNILVVTDSNYVAKAYNEELDVWASNGFVNNRKKPLKHISKWKSVADLKRLR 118 KK L + G +L+VTDS YVA++ N+EL W SNGF+NN+KKPL+H+SKWKS+A+ +L+ Sbjct 654 CKKALKISGPVLIVTDSFYVAESANKELPYWKSNGFLNNKKKPLRHVSKWKSIAECLQLK 713 Query 119 PDVVVTHEPGHQKLDSSPHAYGNNLADQLATQASFKVH 156 PD+++ HE GHQ+ ++ H GNNLAD+LATQ S+ VH Sbjct 714 PDIIIMHEKGHQQPMTTLHTEGNNLADKLATQGSYVVH 751 >RecName: Full=Pro-Pol polyprotein; AltName: Full=Pr125Pol; Contains: RecName: Full=Protease/Reverse transcriptase/ribonuclease H; AltName: Full=p87Pro-RT-RNaseH; Contains: RecName: Full=Protease/Reverse transcriptase; AltName: Full=p65Pro-RT; Contains: RecName: Full=Ribonuclease H; Short=RNase H; Contains: RecName: Full=Integrase; Short=IN; AltName: Full=p42In [Pan troglodytes foamy virus] Sequence ID: Q87040.1 Length: 1146 Range 1: 598 to 751 Score:175 bits(444), Expect:3e-50, Method:Compositional matrix adjust., Identities:90/156(58%), Positives:114/156(73%), Gaps:3/156(1%) Query 2 TDGSAITSPTKEGHLNAGMGIVYFI-NKDGNLQKQQEWSISLGNHTAQFAEIAAFEFALK 60 TDGSAI SP NAGMGIV+ I N + + Q WSI LG+HTAQ AEIAA EFA K Sbjct 598 TDGSAIKSPDPTKSNNAGMGIVHAIYNPEYKILNQ--WSIPLGHHTAQMAEIAAVEFACK 655 Query 61 KCLPLGGNILVVTDSNYVAKAYNEELDVWASNGFVNNRKKPLKHISKWKSVADLKRLRPD 120 K L + G +LV+TDS YVA++ N+EL W SNGFVNN+K+PLKHISKWKS+A+ ++PD Sbjct 656 KALKVPGPVLVITDSFYVAESANKELPYWKSNGFVNNKKEPLKHISKWKSIAECLSIKPD 715 Query 121 VVVTHEPGHQKLDSSPHAYGNNLADQLATQASFKVH 156 + + HE GHQ +++S H GN LAD+LATQ S+ V+ Sbjct 716 ITIQHEKGHQPINTSIHTEGNALADKLATQGSYVVN 751 >RecName: Full=Pro-Pol polyprotein; AltName: Full=Pr125Pol; Contains: RecName: Full=Protease/Reverse transcriptase/ribonuclease H; AltName: Full=p87Pro-RT-RNaseH; Contains: RecName: Full=Protease/Reverse transcriptase; AltName: Full=p65Pro-RT; Contains: RecName: Full=Ribonuclease H; Short=RNase H; Contains: RecName: Full=Integrase; Short=IN; AltName: Full=p42In [Simian foamy virus (TYPE 3 / STRAIN LK3)] Sequence ID: P27401.2 Length: 1143 Range 1: 597 to 751 Score:174 bits(442), Expect:5e-50, Method:Compositional matrix adjust., Identities:87/156(56%), Positives:108/156(69%), Gaps:1/156(0%) Query 1 YTDGSAITSPTKEGHLNAGMGIVYFINKDGNLQKQQEWSISLGNHTAQFAEIAAFEFALK 60 YTDGSAI P NAGMGI + WSI LG+HTAQ AE+AA EFA K Sbjct 597 YTDGSAIKHPNVNKSHNAGMGIAQ-VQFKPEFTVINTWSIPLGDHTAQLAEVAAVEFACK 655 Query 61 KCLPLGGNILVVTDSNYVAKAYNEELDVWASNGFVNNRKKPLKHISKWKSVADLKRLRPD 120 K L + G +L+VTDS YVA++ N+EL W SNGF NN+KKPLKH+SKWKS+AD +L+PD Sbjct 656 KALKIDGPVLIVTDSFYVAESVNKELPYWQSNGFFNNKKKPLKHVSKWKSIADCIQLKPD 715 Query 121 VVVTHEPGHQKLDSSPHAYGNNLADQLATQASFKVH 156 +++ HE GHQ S+ H GNNLAD+LATQ S+ V+ Sbjct 716 IIIIHEKGHQPTASTFHTEGNNLADKLATQGSYVVN 751 >RecName: Full=Pro-Pol polyprotein; AltName: Full=Pr125Pol; Contains: RecName: Full=Protease/Reverse transcriptase/ribonuclease H; AltName: Full=p87Pro-RT-RNaseH; Contains: RecName: Full=Protease/Reverse transcriptase; AltName: Full=p65Pro-RT; Contains: RecName: Full=Ribonuclease H; Short=RNase H; Contains: RecName: Full=Integrase; Short=IN; AltName: Full=p42In [Human spumaretrovirus] Sequence ID: P14350.2 Length: 1143 Range 1: 597 to 751 Score:165 bits(417), Expect:1e-46, Method:Compositional matrix adjust., Identities:88/156(56%), Positives:106/156(67%), Gaps:1/156(0%) Query 1 YTDGSAITSPTKEGHLNAGMGIVYFINKDGNLQKQQEWSISLGNHTAQFAEIAAFEFALK 60 YTDGSAI SP NAGMGIV+ K Q +WSI LGNHTAQ AEIAA EFA K Sbjct 597 YTDGSAIKSPDPTKSNNAGMGIVHATYKP-EYQVLNQWSIPLGNHTAQMAEIAAVEFACK 655 Query 61 KCLPLGGNILVVTDSNYVAKAYNEELDVWASNGFVNNRKKPLKHISKWKSVADLKRLRPD 120 K L + G +LV+TDS YVA++ N+EL W SNGFVNN+KKPLKHISKWKS+A+ ++PD Sbjct 656 KALKIPGPVLVITDSFYVAESANKELPYWKSNGFVNNKKKPLKHISKWKSIAECLSMKPD 715 Query 121 VVVTHEPGHQKLDSSPHAYGNNLADQLATQASFKVH 156 + + HE G GN LAD+LATQ S+ V+ Sbjct 716 ITIQHEKGISLQIPVFILKGNALADKLATQGSYVVN 751 >RecName: Full=Ribonuclease H; Short=RNase H [Pseudoalteromonas translucida TAC125] Sequence ID: Q3IIS1.1 Length: 154 Range 1: 8 to 141 Score:54.7 bits(130), Expect:7e-09, Method:Compositional matrix adjust., Identities:41/152(27%), Positives:66/152(43%), Gaps:18/152(11%) Query 1 YTDGSAITSPTKEGHLNAGMGIVYFINKDGNLQKQQEWSISLGNHTAQFAEIAAFEFALK 60 YTDGS + +P G+ ++ I + + Q + ++ N I A E + Sbjct 8 YTDGSCLGNPGPGGYG------IFMIYNEHEKKLSQGYKLTTNNRMEMLGAIVALEVLTR 61 Query 61 KCLPLGGNILVVTDSNYVAKAYNEELDVWASNGFVNNRKKPLKHISKWKSVADLKRLRPD 120 C+ I + TDS YV + + W G++ + KKP+K++ WK + DL + Sbjct 62 PCV-----INITTDSQYVKQGIESWITNWKKRGWLTSAKKPVKNVDLWKRL-DLACAKHT 115 Query 121 VVVTHEPGHQKLDSSPHAYGNNLADQLATQAS 152 V GH S H Y N + D LA A+ Sbjct 116 VTWKWVKGH-----SGHKY-NEIVDDLARDAA 141 >RecName: Full=Ribonuclease H; Short=RNase H [Lachnoclostridium phytofermentans ISDg] Sequence ID: A9KLJ9.1 Length: 158 Range 1: 6 to 146 Score:52.4 bits(124), Expect:6e-08, Method:Compositional matrix adjust., Identities:49/158(31%), Positives:73/158(46%), Gaps:23/158(14%) Query 1 YTDGSAITSPTKEGHLNAGMG-IVYFINKDGNLQKQQEWS----ISLGNHTAQFAEIAAF 55 YTDG+A +P G G G I+ +I+ G ++ +E+S + N A I Sbjct 6 YTDGAARGNPDGPG----GYGTILSYIDSTG-VEHIREYSGGYKKTTNNRMELMAAIVGL 60 Query 56 EFALKKCLPLGGNILVVTDSNYVAKAYNEE-LDVWASNGFVNNRKKPLKHISKWKSVADL 114 E K C+ + + +DS YV KA+NE LD W G+ + +P+K++ WK + Sbjct 61 EALTKPCV-----VTLYSDSQYVVKAFNEHWLDGWIKKGWKRGKNEPVKNVDLWKRLLAA 115 Query 115 KRLRPDVVVTHEPGHQKLDSSPHAYGNNLADQLATQAS 152 K + DV GH D P N D LAT A+ Sbjct 116 KN-QHDVTFCWVKGH---DGHPQ---NERCDVLATTAA 146 >RecName: Full=Ribonuclease H; Short=RNase H [Ralstonia pseudosolanacearum GMI1000] Sequence ID: Q8XZ91.1 Length: 151 Range 1: 39 to 139 Score:48.1 bits(113), Expect:2e-06, Method:Compositional matrix adjust., Identities:34/113(30%), Positives:50/113(44%), Gaps:12/113(10%) Query 39 SISLGNHTAQFAEIAAFEFALKKCLPLGGNILVVTDSNYVAKAYNEELDVWASNGFVNNR 98 +++ N A I AF + C + V TDS YV K +E L W + G+ Sbjct 39 AVTTNNRMELMAVIEAFRALKRPC-----RVKVYTDSQYVQKGISEWLAGWKARGWKTAD 93 Query 99 KKPLKHISKWKSVADLKRLRPDVVVTHEPGHQKLDSSPHAYGNNLADQLATQA 151 KKP+K+ W+++ +L VVTHE + GN AD LA + Sbjct 94 KKPVKNDDLWRTLDEL-------VVTHEVSWHWVKGHAGHPGNERADALANKG 139 >RecName: Full=Ribonuclease H; Short=RNase H [Campylobacter curvus 525.92] Sequence ID: A7H185.1 Length: 149 Range 1: 7 to 111 Score:47.4 bits(111), Expect:3e-06, Method:Compositional matrix adjust., Identities:34/116(29%), Positives:56/116(48%), Gaps:11/116(9%) Query 1 YTDGSAITSPTKEGHLNAGMGIVYFINKDGNLQKQQEWSISLGNHTAQFAEIAAFEFALK 60 ++DGS + +P AG G Y + +G ++K + N+ + + ALK Sbjct 7 FSDGSCLNNP------GAG-GWAYILEFNGAVKKDSGGAAMTTNNQMELTAVIEGLKALK 59 Query 61 KCLPLGGNILVVTDSNYVAKAYNEELDVWASNGFVNNRKKPLKHISKWKSVADLKR 116 + P + + TDS+YVA A N LD W F+ + KKP+K+I W+ + R Sbjct 60 E--PC--EVRLFTDSSYVANAVNSWLDGWVKKNFIGSDKKPVKNIELWQEYLRVSR 111 >RecName: Full=Ribonuclease H; Short=RNase H [Paraglaciecola sp. T6c] Sequence ID: Q15TA7.1 Length: 153 Range 1: 7 to 140 Score:45.8 bits(107), Expect:2e-05, Method:Compositional matrix adjust., Identities:44/152(29%), Positives:63/152(41%), Gaps:18/152(11%) Query 1 YTDGSAITSPTKEGHLNAGMGIVYFINKDGNLQKQQEWSISLGNHTAQFAEIAAFEFALK 60 YTDGS + +P G G V N+ + Q + + N A I A + Sbjct 7 YTDGSCLGNPGP-----GGYGAVLLFNQHSK-ELSQGFVHTTNNRMELLATIEALASLTE 60 Query 61 KCLPLGGNILVVTDSNYVAKAYNEELDVWASNGFVNNRKKPLKHISKWKSVADLKRLRPD 120 C + + TDS YV N+ + W NG+ + KKP+K++ WK + D + R D Sbjct 61 TC-----KVDLTTDSQYVKNGINQWIKNWRKNGWRTSDKKPVKNVDLWKRL-DEQVGRHD 114 Query 121 VVVTHEPGHQKLDSSPHAYGNNLADQLATQAS 152 V GH S H N D LA A+ Sbjct 115 VKWHWVKGH-----SGHPM-NERCDVLARDAA 140 >RecName: Full=Ribonuclease H; Short=RNase H [Roseobacter denitrificans OCh 114] Sequence ID: Q16AK0.1 Length: 150 Range 1: 7 to 149 Score:45.1 bits(105), Expect:3e-05, Method:Compositional matrix adjust., Identities:48/156(31%), Positives:66/156(42%), Gaps:15/156(9%) Query 1 YTDGSAITSPTKEGHLNAGMGIVYFINKDGNLQKQQEWSISLGNHTAQFAEIAAFEFALK 60 YTDG+ +P G G++ + L K++ + T E+ A AL+ Sbjct 7 YTDGACSGNPGP-----GGWGVLLQAKEGDRLVKERALKGGEAHTTNNRMELLAAINALE 61 Query 61 KCLPLGGNILVVTDSNYVAKAYNEELDVWASNGFVNNRKKPLKHISKWKSVADLKRLRPD 120 L I VVTDSNYV + W NG+ N KKP+ + W+ + D R D Sbjct 62 -SLSRASTITVVTDSNYVKNGITGWIHGWKRNGWKNAAKKPVANAELWQRL-DEANARHD 119 Query 121 VVVTHEPGHQKLDSSPHAYGNNLADQLAT--QASFK 154 V GH + HA N AD+LA A FK Sbjct 120 VTWKWVKGH-----AGHAE-NERADELARAGMAPFK 149 >RecName: Full=Ribonuclease H; Short=RNase H [Ruegeria pomeroyi DSS-3] Sequence ID: Q5LNJ2.1 Length: 155 Range 1: 7 to 141 Score:43.5 bits(101), Expect:8e-05, Method:Compositional matrix adjust., Identities:44/148(30%), Positives:63/148(42%), Gaps:13/148(8%) Query 1 YTDGSAITSPTKEGHLNAGMGIVYFINKDGNLQKQQEWSISLGNHTAQFAEIAAFEFALK 60 YTDG+ +P G G++ + + K++E T E+ A AL+ Sbjct 7 YTDGACSGNPGP-----GGWGVLLRAIEGETVLKERELCGGEAETTNNRMELLAAINALE 61 Query 61 KCLPLGGNILVVTDSNYVAKAYNEELDVWASNGFVNNRKKPLKHISKWKSVADLKRLRPD 120 L I VVTDS YV + W NG+ KKP+K++ W+ + DL + R D Sbjct 62 -TLERPSKITVVTDSAYVKNGVTGWIFGWKRNGWKTAGKKPVKNVELWQRL-DLAQARHD 119 Query 121 VVVTHEPGHQKLDSSPHAYGNNLADQLA 148 V GH P N AD+LA Sbjct 120 VTWKWVKGHA---GHPE---NERADELA 141 >RecName: Full=Ribonuclease H; Short=RNase H [Coxiella burnetii RSA 331] Sequence ID: A9NB52.1 Length: 154 >RecName: Full=Ribonuclease H; Short=RNase H [Coxiella burnetii RSA 493] Sequence ID: Q83EK3.1 Length: 154 Range 1: 12 to 148 Score:43.5 bits(101), Expect:9e-05, Method:Compositional matrix adjust., Identities:43/156(28%), Positives:70/156(44%), Gaps:20/156(12%) Query 1 YTDGSAITSPTKEGHLNAGMGIVYFINKDGNLQKQQEWSISLGNHTAQFAEIAAFEFALK 60 Y DG+ +P G G++ N Q +++ + N T E+ A LK Sbjct 12 YCDGACRGNPGP-----GGWGVLLRYN-----QHERQLHGGVANTTNNQMELTAAIEGLK 61 Query 61 KCLPLGGNILVVTDSNYVAKAYNEELDVWASNGFVNNRKKPLKHISKWKSVADLKRLRPD 120 L ++V TDS Y+ + E L VW G+ + KKP+K+ W+++ + + Sbjct 62 S-LKKPCQVVVTTDSQYLRRGITEWLPVWKRRGWRTSNKKPVKNQPLWETLE--REVERH 118 Query 121 VVVTHE-PGHQKLDSSPHAYGNNLADQLATQASFKV 155 +V H GH S HA N +AD+LA + +V Sbjct 119 TIVWHWVKGH-----SGHAE-NEIADELANRGIDEV 148 >RecName: Full=Ribonuclease H; Short=RNase H [Coxiella burnetii Dugway 5J108-111] Sequence ID: A9KGQ0.1 Length: 154 >RecName: Full=Ribonuclease H; Short=RNase H [Coxiella burnetii CbuG_Q212] Sequence ID: B6J1Y7.1 Length: 154 Range 1: 12 to 148 Score:43.5 bits(101), Expect:9e-05, Method:Compositional matrix adjust., Identities:43/156(28%), Positives:70/156(44%), Gaps:20/156(12%) Query 1 YTDGSAITSPTKEGHLNAGMGIVYFINKDGNLQKQQEWSISLGNHTAQFAEIAAFEFALK 60 Y DG+ +P G G++ N Q +++ + N T E+ A LK Sbjct 12 YCDGACRGNPGP-----GGWGVLLRYN-----QHERQLHGGVANTTNNQMELTAAIEGLK 61 Query 61 KCLPLGGNILVVTDSNYVAKAYNEELDVWASNGFVNNRKKPLKHISKWKSVADLKRLRPD 120 L ++V TDS Y+ + E L VW G+ + KKP+K+ W+++ + + Sbjct 62 S-LKKPCQVVVTTDSQYLRRGITEWLPVWKRRGWRTSNKKPVKNQPLWETLE--REVERH 118 Query 121 VVVTHE-PGHQKLDSSPHAYGNNLADQLATQASFKV 155 +V H GH S HA N +AD+LA + +V Sbjct 119 TIVWHWVKGH-----SGHAE-NEIADELANRGIDEV 148 >RecName: Full=Ribonuclease H; Short=RNase H [Coxiella burnetii CbuK_Q154] Sequence ID: B6J5V1.1 Length: 154 Range 1: 12 to 148 Score:43.5 bits(101), Expect:1e-04, Method:Compositional matrix adjust., Identities:43/156(28%), Positives:70/156(44%), Gaps:20/156(12%) Query 1 YTDGSAITSPTKEGHLNAGMGIVYFINKDGNLQKQQEWSISLGNHTAQFAEIAAFEFALK 60 Y DG+ +P G G++ N Q +++ + N T E+ A LK Sbjct 12 YCDGACRGNPGP-----GGWGVLLRYN-----QHERQLHGGVANTTNNQMELTAAIEGLK 61 Query 61 KCLPLGGNILVVTDSNYVAKAYNEELDVWASNGFVNNRKKPLKHISKWKSVADLKRLRPD 120 L ++V TDS Y+ + E L VW G+ + KKP+K+ W+++ + + Sbjct 62 S-LKKPCQVVVTTDSQYLRRGITEWLPVWKRRGWRTSNKKPVKNQPLWETLE--REVERH 118 Query 121 VVVTHE-PGHQKLDSSPHAYGNNLADQLATQASFKV 155 +V H GH S HA N +AD+LA + +V Sbjct 119 TIVWHWVKGH-----SGHAE-NEIADELANRGIDEV 148 >RecName: Full=Ribonuclease H; Short=RNase H [Dechloromonas aromatica RCB] Sequence ID: Q47FN9.1 Length: 148 Range 1: 47 to 107 Score:42.7 bits(99), Expect:2e-04, Method:Compositional matrix adjust., Identities:28/66(42%), Positives:36/66(54%), Gaps:5/66(7%) Query 44 NHTAQFAEIAAFEFALKKCLPLGGNILVVTDSNYVAKAYNEELDVWASNGFVNNRKKPLK 103 N A I A E ALK+ P+GG I TDS YV K NE + W NG+ + KKP+K Sbjct 47 NRMELTAAIRAIE-ALKR--PIGGKIY--TDSQYVMKGINEWIHGWKKNGWKTSDKKPVK 101 Query 104 HISKWK 109 + W+ Sbjct 102 NADLWQ 107 >RecName: Full=Ribonuclease H; Short=RNase H [Nitrosomonas europaea ATCC 19718] Sequence ID: Q82XV8.1 Length: 161 Range 1: 46 to 155 Score:42.7 bits(99), Expect:2e-04, Method:Compositional matrix adjust., Identities:40/119(34%), Positives:53/119(44%), Gaps:12/119(10%) Query 40 ISLGNHTAQFAEIAAFEFALKKCLPLGGNILVV---TDSNYVAKAYNEELDVWASNGFVN 96 ++ N A I A + AL+ LP G L V TDS YV K +E + W G++ Sbjct 46 VTTNNRMELLAAIRALQ-ALES-LPDTGQSLRVQLHTDSQYVQKGISEWVHSWKKRGWLT 103 Query 97 NRKKPLKHISKWKSVADLKRLRPDVVVTHEPGHQKLDSSPHAYGNNLADQLATQASFKV 155 KKP+K+ + WK + L R R V GH D GN AD LA + V Sbjct 104 ADKKPVKNEALWKELDQLSR-RYQVEWFWVRGHNGHD------GNERADMLANRGVVSV 155 >RecName: Full=Ribonuclease H; Short=RNase H [Pectobacterium carotovorum subsp. carotovorum PC1] Sequence ID: C6DC65.1 Length: 154 Range 1: 8 to 107 Score:42.4 bits(98), Expect:3e-04, Method:Compositional matrix adjust., Identities:32/117(27%), Positives:51/117(43%), Gaps:23/117(19%) Query 1 YTDGSAITSPTKEGHLNAGMGIVYFINKDGNLQKQQEWSISLG------NHTAQFAEIAA 54 +TDGS + +P G+ G + Y KQ E +S G N A IAA Sbjct 8 FTDGSCLGNPGPGGY---GALLRY---------KQHEKPLSAGYRLTTNNRMELMAAIAA 55 Query 55 FEFALKKCLPLGGNILVVTDSNYVAKAYNEELDVWASNGFVNNRKKPLKHISKWKSV 111 E +C ++++ TDS YV + + W G+ KKP+K++ W+ + Sbjct 56 LETLTTEC-----DVVLCTDSQYVRQGITSWIHNWKKRGWKTADKKPVKNVDLWQRL 107 >RecName: Full=Ribonuclease H; Short=RNase H [Vibrio vulnificus YJ016] Sequence ID: Q7MII6.1 Length: 155 >RecName: Full=Ribonuclease HI; Short=RNase HI [Vibrio vulnificus CMCP6] Sequence ID: Q8DBD5.1 Length: 155 Range 1: 8 to 141 Score:42.0 bits(97), Expect:3e-04, Method:Compositional matrix adjust., Identities:38/155(25%), Positives:68/155(43%), Gaps:24/155(15%) Query 1 YTDGSAITSPTKEGHLNAGMGIVYFINKDGNLQKQQEWSISLGNHTAQFAEIAAFEFALK 60 +TDGS + +P G+ G+ + Y K Q + ++ N A I A + + Sbjct 8 FTDGSCLGNPGPGGY---GVVLRY---KQVEKTLAQGYRLTTNNRMEMMATIVALQALKE 61 Query 61 KCLPLGGNILVVTDSNYVAKAYNEELDVWASNGFVNNRKKPLKHISKWKSVADLKRLRPD 120 C N+++ TDS YV + + + W G+ KKP+K+ W+++ D + R Sbjct 62 PC-----NVILTTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNADLWQAL-DKETTRHT 115 Query 121 V---VVTHEPGHQKLDSSPHAYGNNLADQLATQAS 152 + V GH++ N + D+LA A+ Sbjct 116 IDWRWVKGHAGHRE---------NEMCDELARAAA 141 >RecName: Full=Ribonuclease H; Short=RNase H [Bordetella avium 197N] Sequence ID: Q2KV56.1 Length: 153 Range 1: 54 to 150 Score:42.0 bits(97), Expect:3e-04, Method:Compositional matrix adjust., Identities:34/105(32%), Positives:46/105(43%), Gaps:8/105(7%) Query 51 EIAAFEFALKKCLPLGGNILVVTDSNYVAKAYNEELDVWASNGFVNNRKKPLKHISKWKS 110 EI A L+ L +++ TDS YV K E L W G++ KKP+K+ Sbjct 54 EILAVVEGLR-ALKRACTVVIHTDSQYVMKGMTEWLPNWKRRGWLTADKKPVKN------ 106 Query 111 VADLKRLRPDVVVTHEPGHQKLDSSPHAYGNNLADQLATQASFKV 155 A+L +L V HE Q + GN +AD LA Q V Sbjct 107 -AELWQLLDAQVARHEVRWQWVRGHNGDPGNEMADMLANQGVASV 150 >RecName: Full=Ribonuclease H; Short=RNase H [Cereibacter sphaeroides ATCC 17025] Sequence ID: A4WNV1.1 Length: 151 Range 1: 7 to 151 Score:42.0 bits(97), Expect:4e-04, Method:Compositional matrix adjust., Identities:46/164(28%), Positives:68/164(41%), Gaps:27/164(16%) Query 1 YTDGSAITSPTKEGHLNAGMGIVYF------INKDGNLQKQQEWSISLGNHTAQFAEIAA 54 YTDG+ +P G G++ + K+ LQ + +++ N A I+A Sbjct 7 YTDGACSGNPGP-----GGWGVLMLAREGEAVVKERTLQGGE--ALTTNNRMELMAAISA 59 Query 55 FEFALKKCLPLGGNILVVTDSNYVAKAYNEELDVWASNGFVNNRKKPLKHISKWKSVADL 114 E L I +VTDS YV + W NG+ +KP+K+ W+ + D Sbjct 60 LE-----ALTRPTEITIVTDSAYVKNGVTTWIHGWKRNGWKTADRKPVKNAELWERL-DA 113 Query 115 KRLRPDVVVTHEPGHQKLDSSPHAYGNNLADQLAT--QASFKVH 156 + R VV GH + HA N AD+LA A FK Sbjct 114 AQQRHKVVWRWIKGH-----AGHAE-NERADELARAGMAPFKTR 151 >RecName: Full=Ribonuclease H; Short=RNase H [Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821] Sequence ID: O69014.1 Length: 156 Range 1: 54 to 150 Score:41.6 bits(96), Expect:5e-04, Method:Compositional matrix adjust., Identities:34/105(32%), Positives:48/105(45%), Gaps:8/105(7%) Query 51 EIAAFEFALKKCLPLGGNILVVTDSNYVAKAYNEELDVWASNGFVNNRKKPLKHISKWKS 110 E+ A AL CL I + TDS YV + W NG++ KKP+K+ WK Sbjct 54 ELQAVIEALS-CLKKPCQIELSTDSKYVMDGLTRWIHGWQKNGWLTAAKKPVKNADLWKQ 112 Query 111 VADLKRLRPDVVVTHEPGHQKLDSSPHAYGNNLADQLATQASFKV 155 + L R + D+ GH + H N ADQLA+ A+ + Sbjct 113 LLALTR-QHDIAWKWVKGH-----AGHP-DNERADQLASDAAIAL 150 >RecName: Full=Ribonuclease H; Short=RNase H [Idiomarina loihiensis L2TR] Sequence ID: Q5QZL3.1 Length: 157 Range 1: 10 to 111 Score:41.2 bits(95), Expect:7e-04, Method:Compositional matrix adjust., Identities:27/113(24%), Positives:50/113(44%), Gaps:11/113(9%) Query 1 YTDGSAITSPTKEGHLNAGMGIVYFINKDGNLQKQQEWSISLGNHTAQFAEIAAFEFALK 60 YTDGS + +P G G V K + + Q + ++ N A IA + Sbjct 10 YTDGSCLGNPGP-----GGYGAVLEYGKH-HKELSQGYRLTTNNRMEMLATIAGLRELKR 63 Query 61 KCLPLGGNILVVTDSNYVAKAYNEELDVWASNGFVNNRKKPLKHISKWKSVAD 113 C ++++ TDS YV + + + W NG+ + +K +K+ W+ + + Sbjct 64 SC-----HVILTTDSQYVKQGVEQWMHRWKQNGWRTSARKAVKNKDLWQQLDE 111 >RecName: Full=Ribonuclease HI; Short=RNase HI [Vibrio parahaemolyticus RIMD 2210633] Sequence ID: Q87MG2.1 Length: 154 Range 1: 8 to 141 Score:41.2 bits(95), Expect:7e-04, Method:Compositional matrix adjust., Identities:38/155(25%), Positives:66/155(42%), Gaps:24/155(15%) Query 1 YTDGSAITSPTKEGHLNAGMGIVYFINKDGNLQKQQEWSISLGNHTAQFAEIAAFEFALK 60 +TDGS + +P G GIV KD + ++++ N A + A + + Sbjct 8 FTDGSCLGNPGP-----GGYGIV-LRYKDVEKTLSKGYTLTTNNRMEMLAAVVALQTLKE 61 Query 61 KCLPLGGNILVVTDSNYVAKAYNEELDVWASNGFVNNRKKPLKHISKWKSVADLKRLRPD 120 C + + TDS YV + + + W G+ KKP+K+ W+++ D + R Sbjct 62 PC-----RVTLTTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNADLWQAL-DKETARHQ 115 Query 121 V---VVTHEPGHQKLDSSPHAYGNNLADQLATQAS 152 V V GH++ N + D+LA A+ Sbjct 116 VDWHWVKGHAGHRE---------NEICDELARTAA 141 >RecName: Full=Ribonuclease H; Short=RNase H [Bradyrhizobium sp. BTAi1] Sequence ID: A5EAL2.1 Length: 154 Range 1: 10 to 139 Score:40.8 bits(94), Expect:8e-04, Method:Compositional matrix adjust., Identities:44/149(30%), Positives:64/149(42%), Gaps:20/149(13%) Query 1 YTDGSAITSPTKEGHLNAGMGIVYFINKDGNLQKQQEWSISLGNHTAQFAEIAAFEFALK 60 YTDG+ +P G I+ F +K+ L+ + + N A I+A E K Sbjct 10 YTDGACSGNPGPGGW----GAILRFGDKEKELKGGE--PHTTNNRMELMAAISALEALKK 63 Query 61 KCLPLGGNILVVTDSNYVAKAYNEELDVWASNGFVNNRKKPLKHISKWKSVADLKRLRPD 120 C + + TDS YV + + W NG+ KKP+K+ W+ + L+P Sbjct 64 SC-----QVELYTDSQYVRQGITGWIHGWKRNGWKTADKKPVKNAELWQRLDAA--LKPH 116 Query 121 VVVTHE-PGHQKLDSSPHAYGNNLADQLA 148 V H GH + HA N ADQLA Sbjct 117 KVNWHWVKGH-----AGHAE-NERADQLA 139 >RecName: Full=Ribonuclease H; Short=RNase H [Citrobacter koseri ATCC BAA-895] Sequence ID: A8AKR0.1 Length: 155 Range 1: 8 to 107 Score:40.8 bits(94), Expect:9e-04, Method:Compositional matrix adjust., Identities:27/111(24%), Positives:49/111(44%), Gaps:11/111(9%) Query 1 YTDGSAITSPTKEGHLNAGMGIVYFINKDGNLQKQQEWSISLGNHTAQFAEIAAFEFALK 60 +TDGS + +P G+ I+ + + + +S++ N A I A E + Sbjct 8 FTDGSCLGNPGPGGY----GAILRYRGHEKTFS--EGYSLTTNNRMELMAAIVALEALKE 61 Query 61 KCLPLGGNILVVTDSNYVAKAYNEELDVWASNGFVNNRKKPLKHISKWKSV 111 C + + TDS YV + + + W G+ KKP+K++ WK + Sbjct 62 HC-----EVTLSTDSQYVRQGITQWIHNWKKRGWKTAEKKPVKNVDLWKRL 107 >RecName: Full=Ribonuclease H; Short=RNase H [Pectobacterium atrosepticum SCRI1043] Sequence ID: Q6D1V7.1 Length: 154 Range 1: 8 to 107 Score:40.8 bits(94), Expect:0.001, Method:Compositional matrix adjust., Identities:33/117(28%), Positives:50/117(42%), Gaps:23/117(19%) Query 1 YTDGSAITSPTKEGHLNAGMGIVYFINKDGNLQKQQEWSISLG------NHTAQFAEIAA 54 +TDGS + +P G+ G + Y KQ E ++S G N A IAA Sbjct 8 FTDGSCLGNPGPGGY---GAVLRY---------KQHEKALSAGYRLTTNNRMELMAAIAA 55 Query 55 FEFALKKCLPLGGNILVVTDSNYVAKAYNEELDVWASNGFVNNRKKPLKHISKWKSV 111 E C +I++ TDS YV + + W + KKP+K++ WK + Sbjct 56 LETLTTDC-----DIVLSTDSQYVRQGITSWIHNWKKRSWKTADKKPVKNVDLWKRL 107 >RecName: Full=Ribonuclease H; Short=RNase H [Bradyrhizobium diazoefficiens USDA 110] Sequence ID: Q89UU3.1 Length: 154 Range 1: 10 to 145 Score:40.8 bits(94), Expect:0.001, Method:Compositional matrix adjust., Identities:45/157(29%), Positives:67/157(42%), Gaps:24/157(15%) Query 1 YTDGSAITSPTKEGHLNAGMGIVYFINKDGNLQKQQEWSISLGNHTAQFAEIAAFEFALK 60 YTDG+ +P G I+ F +K+ L + + + N A I+A E K Sbjct 10 YTDGACSGNPGPGGW----GAILKFGDKEKELNGGERHTTN--NQMELMAAISALEALKK 63 Query 61 KCLPLGGNILVVTDSNYVAKAYNEELDVWASNGFVNNRKKPLKHISKWKSV-ADLK--RL 117 C + + TDS YV + + W NG+ KKP+K++ W+ + A LK ++ Sbjct 64 PC-----TVDLYTDSQYVRQGITGWIHGWKRNGWRTADKKPVKNVELWQRLDAALKAHQV 118 Query 118 RPDVVVTHEPGHQKLDSSPHAYGNNLADQLATQASFK 154 R V H GH + N ADQLA K Sbjct 119 RWHWVKGH-AGHPE---------NERADQLARDGIVK 145 >RecName: Full=Ribonuclease H; Short=RNase H [Vibrio cholerae O395] Sequence ID: A5F633.1 Length: 156 >RecName: Full=Ribonuclease H; Short=RNase H [Vibrio cholerae M66-2] Sequence ID: C3LPN8.1 Length: 156 >RecName: Full=Ribonuclease HI; Short=RNase HI [Vibrio cholerae O1 biovar El Tor str. N16961] Sequence ID: Q9KPX8.1 Length: 156 Range 1: 8 to 141 Score:40.8 bits(94), Expect:0.001, Method:Compositional matrix adjust., Identities:38/156(24%), Positives:69/156(44%), Gaps:26/156(16%) Query 1 YTDGSAITSPTKEGHLNAGMGIVY-FINKDGNLQKQQEWSISLGNHTAQFAEIAAFEFAL 59 +TDGS + +P G+ GIV + + L + + ++ N A + A + Sbjct 8 FTDGSCLGNPGPGGY-----GIVMRYKQVEKTLARG--YRLTTNNRMEMLAAVMALQALK 60 Query 60 KKCLPLGGNILVVTDSNYVAKAYNEELDVWASNGFVNNRKKPLKHISKWKSVADLKRLRP 119 + C +++ TDS YV + + + W G+ KKP+K+ W+++ D + R Sbjct 61 EPC-----RVILTTDSQYVRQGITQWIHNWKLRGWKTADKKPVKNADLWQAL-DKETARH 114 Query 120 DVV---VTHEPGHQKLDSSPHAYGNNLADQLATQAS 152 V V GH++ N + D+LA QA+ Sbjct 115 QVEWRWVKGHAGHRE---------NEMCDELARQAA 141 >RecName: Full=Ribonuclease H; Short=RNase H [Enterobacter sp. 638] Sequence ID: A4W6V4.1 Length: 155 Range 1: 8 to 107 Score:40.4 bits(93), Expect:0.001, Method:Compositional matrix adjust., Identities:26/111(23%), Positives:50/111(45%), Gaps:11/111(9%) Query 1 YTDGSAITSPTKEGHLNAGMGIVYFINKDGNLQKQQEWSISLGNHTAQFAEIAAFEFALK 60 +TDGS + +P G+ I+ + + + + ++ N A I A E + Sbjct 8 FTDGSCLGNPGPGGY----GAILRYRGHEKTFN--EGYHLTTNNRMELMAAIVALEALKE 61 Query 61 KCLPLGGNILVVTDSNYVAKAYNEELDVWASNGFVNNRKKPLKHISKWKSV 111 C ++++ TDS YV + + + W G+ KKP+K++ WK + Sbjct 62 DC-----DVVISTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWKRL 107 >RecName: Full=Ribonuclease H; Short=RNase H [Cereibacter sphaeroides ATCC 17029] Sequence ID: A3PMR3.1 Length: 151 Range 1: 7 to 151 Score:40.4 bits(93), Expect:0.001, Method:Compositional matrix adjust., Identities:45/164(27%), Positives:67/164(40%), Gaps:27/164(16%) Query 1 YTDGSAITSPTKEGHLNAGMGIVYF------INKDGNLQKQQEWSISLGNHTAQFAEIAA 54 YTDG+ +P G G++ + K+ LQ + ++ N A I+A Sbjct 7 YTDGACSGNPGP-----GGWGVLMLAREGEAVVKERTLQGGE--VLTTNNRMELMAAISA 59 Query 55 FEFALKKCLPLGGNILVVTDSNYVAKAYNEELDVWASNGFVNNRKKPLKHISKWKSVADL 114 E + I +VTDS YV + W NG+ +KP+K+ W+ + D Sbjct 60 LEALTRPT-----EITIVTDSAYVKNGVTTWIHGWKRNGWKTADRKPVKNAELWERL-DA 113 Query 115 KRLRPDVVVTHEPGHQKLDSSPHAYGNNLADQLAT--QASFKVH 156 + R VV GH + HA N AD+LA A FK Sbjct 114 AQQRHKVVWRWIKGH-----AGHAE-NERADELARAGMAPFKTR 151 >RecName: Full=Ribonuclease H; Short=RNase H [Parvibaculum lavamentivorans DS-1] Sequence ID: A7HQX4.1 Length: 150 Range 1: 10 to 142 Score:40.4 bits(93), Expect:0.001, Method:Compositional matrix adjust., Identities:43/151(28%), Positives:62/151(41%), Gaps:18/151(11%) Query 1 YTDGSAITSPTKEGHLNAGMGIVYFINKDGNLQKQQEWSISLGNHTAQFAEIAAFEFALK 60 YTDG+ +P G G++ I KD + + N A I A E ALK Sbjct 10 YTDGACSGNPGP-----GGWGVL-MIYKDREKELCGGEQATTNNRMELMAAIQALE-ALK 62 Query 61 KCLPLGGNILVVTDSNYVAKAYNEELDVWASNGFVNNRKKPLKHISKWKSVADLKRLRPD 120 + ++ + TDSNYV + + W NG+ N K+P+K+ W +RL Sbjct 63 R----DAHVRIHTDSNYVKDGITKWIHGWKKNGWKNAAKQPVKNAELW------RRLEAA 112 Query 121 VVVTHEPGHQKLDSSPHAYGNNLADQLATQA 151 + H S H N+ AD LA Q Sbjct 113 ISTHQVSWHWVKGHSDHPE-NDRADALARQG 142 >RecName: Full=Ribonuclease H; Short=RNase H [Ruegeria sp. TM1040] Sequence ID: Q1GDG1.1 Length: 157 Range 1: 7 to 149 Score:40.4 bits(93), Expect:0.001, Method:Compositional matrix adjust., Identities:46/156(29%), Positives:64/156(41%), Gaps:15/156(9%) Query 1 YTDGSAITSPTKEGHLNAGMGIVYFINKDGNLQKQQEWSISLGNHTAQFAEIAAFEFALK 60 YTDG+ +P G G + + K++E T E+ A AL+ Sbjct 7 YTDGACSGNPGP-----GGWGALLRAMDGETVLKERELKGGEKETTNNRMELLAAIHALE 61 Query 61 KCLPLGGNILVVTDSNYVAKAYNEELDVWASNGFVNNRKKPLKHISKWKSVADLKRLRPD 120 L I VVTDS YV + W NG+ + KKP+K++ W+ + D + R D Sbjct 62 -SLARPSKITVVTDSAYVKNGVTGWIFGWKKNGWKTSAKKPVKNVELWQRL-DAAQSRHD 119 Query 121 VVVTHEPGHQKLDSSPHAYGNNLADQLAT--QASFK 154 V GH P N AD+LA A FK Sbjct 120 VTWEWVKGHA---GHPE---NERADELARAGMAPFK 149 >RecName: Full=Ribonuclease H; Short=RNase H [Jannaschia sp. CCS1] Sequence ID: Q28V43.1 Length: 157 Range 1: 7 to 150 Score:40.4 bits(93), Expect:0.001, Method:Compositional matrix adjust., Identities:41/157(26%), Positives:65/157(41%), Gaps:15/157(9%) Query 1 YTDGSAITSPTKEGHLNAGMGIVYFINKDGNLQKQQEWSISLGNHTAQFAEIAAFEFALK 60 YTDG+ +P G G + + K++E + T E+ A AL+ Sbjct 7 YTDGACSGNPGP-----GGWGALMRAKDGDTILKERELKGGEADTTNNRMELLAAISALE 61 Query 61 KCLPLGGNILVVTDSNYVAKAYNEELDVWASNGFVNNRKKPLKHISKWKSVADLKRLRPD 120 L + ++TDS YV + W NG+ + +KP+K++ W+ + D + R Sbjct 62 -ALDRPSTLTIITDSAYVKNGITGWMHGWKRNGWKTSTRKPVKNVDLWQRL-DEAQSRHT 119 Query 121 VVVTHEPGHQKLDSSPHAYGNNLADQLAT--QASFKV 155 V GH + GN AD+LA A FK Sbjct 120 VTWEWIKGHAGHE------GNEKADELARAGMAPFKT 150 >RecName: Full=Ribonuclease H; Short=RNase H [Phenylobacterium zucineum HLK1] Sequence ID: B4R8T3.1 Length: 153 Range 1: 8 to 124 Score:40.0 bits(92), Expect:0.001, Method:Compositional matrix adjust., Identities:37/130(28%), Positives:55/130(42%), Gaps:14/130(10%) Query 1 YTDGSAITSPTKEGHLNAGMG-IVYFINKDGNLQKQQEWSISLGNHTAQFAEIAAFEFAL 59 YTDG+ +P G G I+ ++ L + + + N A I A E Sbjct 8 YTDGACSGNPGP-----GGWGAILIHGEREKELCGGE--AATTNNRMELMAAIQALEALK 60 Query 60 KKCLPLGGNILVVTDSNYVAKAYNEELDVWASNGFVNNRKKPLKHISKWKSVADLKRLRP 119 + C + + TDS YV K +E + W G++ KKP+K+ WK + D RLR Sbjct 61 RPC-----RVELHTDSQYVQKGIHEWIHGWKKRGWLTADKKPVKNDDLWKRL-DAARLRH 114 Query 120 DVVVTHEPGH 129 V GH Sbjct 115 HVDWRWVKGH 124 >RecName: Full=Ribonuclease H; Short=RNase H [Paramagnetospirillum magneticum AMB-1] Sequence ID: Q2W9A9.1 Length: 154 Range 1: 14 to 113 Score:40.0 bits(92), Expect:0.001, Method:Compositional matrix adjust., Identities:31/111(28%), Positives:47/111(42%), Gaps:11/111(9%) Query 1 YTDGSAITSPTKEGHLNAGMGIVYFINKDGNLQKQQEWSISLGNHTAQFAEIAAFEFALK 60 YTDG+ +P G I+ F + L+ + S + N A + A + Sbjct 14 YTDGACSGNPGPGGW----GAILRFKGIEKELKGGE--SPTTNNRMEMMAVLVALNTLTR 67 Query 61 KCLPLGGNILVVTDSNYVAKAYNEELDVWASNGFVNNRKKPLKHISKWKSV 111 C + V TDS YV K E L W + G+ KKP+K+ WK++ Sbjct 68 SCA-----VDVYTDSEYVKKGMTEWLRGWKARGWKTADKKPVKNDDLWKAL 113 >RecName: Full=Ribonuclease H; Short=RNase H [Salmonella enterica subsp. enterica serovar Paratyphi C str. RKS4594] Sequence ID: C0Q6N2.1 Length: 155 Range 1: 8 to 107 Score:40.0 bits(92), Expect:0.002, Method:Compositional matrix adjust., Identities:26/111(23%), Positives:49/111(44%), Gaps:11/111(9%) Query 1 YTDGSAITSPTKEGHLNAGMGIVYFINKDGNLQKQQEWSISLGNHTAQFAEIAAFEFALK 60 +TDGS + +P G+ I+ + + + ++++ N A I A E + Sbjct 8 FTDGSCLGNPGPGGY----GAILRYRGHEKTFS--EGYTLTTNNRMELMAAIVALEALKE 61 Query 61 KCLPLGGNILVVTDSNYVAKAYNEELDVWASNGFVNNRKKPLKHISKWKSV 111 C + + TDS YV + + + W G+ KKP+K++ WK + Sbjct 62 HC-----EVTLSTDSQYVRQGITQWIHNWKKRGWKTAEKKPVKNVDLWKRL 107 >RecName: Full=Ribonuclease H; Short=RNase H [Legionella pneumophila str. Corby] Sequence ID: A5IBM5.1 Length: 143 >RecName: Full=Ribonuclease H; Short=RNase H [Legionella pneumophila str. Paris] Sequence ID: Q5X5I2.1 Length: 143 >RecName: Full=Ribonuclease H; Short=RNase H [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Sequence ID: Q5ZVQ7.1 Length: 143 Range 1: 6 to 108 Score:39.7 bits(91), Expect:0.002, Method:Compositional matrix adjust., Identities:29/115(25%), Positives:52/115(45%), Gaps:13/115(11%) Query 1 YTDGSAITSPTKEGHLNAGMGIVYFIN-KDGNLQKQQEWSISLGNHTAQFAEIAAFEFAL 59 YTDG+ +P G G++ N ++ L + + + N A I E Sbjct 6 YTDGACKGNPGP-----GGWGVLLRYNGREKTLHGGE--AQTTNNRMELMAAIKGLEALK 58 Query 60 KKCLPLGGNILVVTDSNYVAKAYNEELDVWASNGFVNNRKKPLKHISKWKSVADL 114 + C + + TDS Y+ + E + W NG+ N++K+ +K+ WKS+ +L Sbjct 59 RPC-----EVDLYTDSQYLQQGMKEWIKTWKRNGWRNSKKELVKNAELWKSLDNL 108 >RecName: Full=Ribonuclease H; Short=RNase H [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-] Sequence ID: A9MPF1.1 Length: 155 >RecName: Full=Ribonuclease H; Short=RNase H [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Sequence ID: A9MZ19.1 Length: 155 >RecName: Full=Ribonuclease H; Short=RNase H [Salmonella enterica subsp. enterica serovar Newport str. SL254] Sequence ID: B4SV39.1 Length: 155 >RecName: Full=Ribonuclease H; Short=RNase H [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] Sequence ID: B4TK85.1 Length: 155 >RecName: Full=Ribonuclease H; Short=RNase H [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] Sequence ID: B4TYH0.1 Length: 155 >RecName: Full=Ribonuclease H; Short=RNase H [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Sequence ID: B5BDW5.1 Length: 155 >RecName: Full=Ribonuclease H; Short=RNase H [Salmonella enterica subsp. enterica serovar Agona str. SL483] Sequence ID: B5F8X2.1 Length: 155 >RecName: Full=Ribonuclease H; Short=RNase H [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] Sequence ID: B5FJ58.1 Length: 155 >RecName: Full=Ribonuclease H; Short=RNase H [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Sequence ID: B5R449.1 Length: 155 >RecName: Full=Ribonuclease H; Short=RNase H [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] Sequence ID: B5R5L3.1 Length: 155 >RecName: Full=Ribonuclease HI; Short=RNase HI; AltName: Full=Ribonuclease H; Short=RNase H [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] Sequence ID: P0A2B9.1 Length: 155 >RecName: Full=Ribonuclease HI; Short=RNase HI [Salmonella enterica subsp. enterica serovar Typhi] Sequence ID: P0A2C0.1 Length: 155 >RecName: Full=Ribonuclease H; Short=RNase H [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] Sequence ID: Q57SZ6.2 Length: 155 >RecName: Full=Ribonuclease H; Short=RNase H [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] Sequence ID: Q5PFD8.1 Length: 155 Range 1: 8 to 107 Score:40.0 bits(92), Expect:0.002, Method:Compositional matrix adjust., Identities:26/111(23%), Positives:49/111(44%), Gaps:11/111(9%) Query 1 YTDGSAITSPTKEGHLNAGMGIVYFINKDGNLQKQQEWSISLGNHTAQFAEIAAFEFALK 60 +TDGS + +P G+ I+ + + + ++++ N A I A E + Sbjct 8 FTDGSCLGNPGPGGY----GAILRYRGHEKTFS--EGYTLTTNNRMELMAAIVALEALKE 61 Query 61 KCLPLGGNILVVTDSNYVAKAYNEELDVWASNGFVNNRKKPLKHISKWKSV 111 C + + TDS YV + + + W G+ KKP+K++ WK + Sbjct 62 HC-----EVTLSTDSQYVRQGITQWIHNWKKRGWKTAEKKPVKNVDLWKRL 107 >RecName: Full=Ribonuclease H; Short=RNase H [Nitrosomonas eutropha C91] Sequence ID: Q0AE34.1 Length: 162 Range 1: 81 to 152 Score:40.0 bits(92), Expect:0.002, Method:Compositional matrix adjust., Identities:29/79(37%), Positives:40/79(50%), Gaps:7/79(8%) Query 73 TDSNYVAKAYNEELDVWASNGFVNNRKKPLKHISKWKSVADLKRLRPDVVVTHEPGHQKL 132 TDS YV K +E + W G+ KKP+K+ + W+ + DL + R V GH Sbjct 81 TDSQYVQKGISEWIHGWKKRGWRTADKKPVKNEALWRELDDLSQ-RHQVEWFWVRGH--- 136 Query 133 DSSPHAYGNNLADQLATQA 151 + HA GN AD+LA Q Sbjct 137 --NGHA-GNERADRLANQG 152 >RecName: Full=Ribonuclease H; Short=RNase H [Cupriavidus pinatubonensis JMP134] Sequence ID: Q46Z81.1 Length: 145 Range 1: 7 to 134 Score:39.7 bits(91), Expect:0.002, Method:Compositional matrix adjust., Identities:36/144(25%), Positives:58/144(40%), Gaps:26/144(18%) Query 1 YTDGSAITSPTKEGH---LNAGMGIVYFINKDGNLQKQQEWSISLGNHTAQFAEIAAFEF 57 Y+DG+ +P + G L AG + N + N A I A Sbjct 7 YSDGACKGNPGRGGWGAVLVAGTNEKELFGGEAN---------TTNNRMEMTAVIEALRA 57 Query 58 ALKKCLPLGGNILVVTDSNYVAKAYNEELDVWASNGFVNNRKKPLKHISKWKSVADLKRL 117 + C + V TDS YV K +E L W + G+ KKP+K+ W+ + L + Sbjct 58 LKRPC-----TVQVYTDSQYVQKGISEWLPGWKARGWKTADKKPVKNADLWQELDTL--V 110 Query 118 RPDVVVTH-------EPGHQKLDS 134 +P + H PG+++ D+ Sbjct 111 QPHKITWHWVRGHNGHPGNERADA 134 >RecName: Full=Ribonuclease H; Short=RNase H [Vibrio campbellii ATCC BAA-1116] Sequence ID: A7MY21.1 Length: 154 Range 1: 8 to 141 Score:39.7 bits(91), Expect:0.003, Method:Compositional matrix adjust., Identities:38/156(24%), Positives:67/156(42%), Gaps:26/156(16%) Query 1 YTDGSAITSPTKEGHLNAGMGIVY-FINKDGNLQKQQEWSISLGNHTAQFAEIAAFEFAL 59 +TDGS + +P G GIV + + L K ++++ N A + A + Sbjct 8 FTDGSCLGNPGP-----GGYGIVLRYKQTEKTLAKG--YTLTTNNRMEMLAAVVALQTLK 60 Query 60 KKCLPLGGNILVVTDSNYVAKAYNEELDVWASNGFVNNRKKPLKHISKWKSVADLKRLRP 119 + C + + TDS YV + + + W G+ KKP+K+ W+++ D + R Sbjct 61 EPC-----QVTLTTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNADLWQAL-DKETARH 114 Query 120 DV---VVTHEPGHQKLDSSPHAYGNNLADQLATQAS 152 V V GH++ N + D+LA A+ Sbjct 115 KVDWHWVKGHAGHRE---------NEICDELARTAA 141 >RecName: Full=Ribonuclease H; Short=RNase H [Erwinia tasmaniensis Et1/99] Sequence ID: B2VHJ5.1 Length: 155 Range 1: 8 to 107 Score:39.3 bits(90), Expect:0.003, Method:Compositional matrix adjust., Identities:29/113(26%), Positives:48/113(42%), Gaps:15/113(13%) Query 1 YTDGSAITSPTKEGHLNAGMGIVYFINKDGNLQK--QQEWSISLGNHTAQFAEIAAFEFA 58 +TDGS + +P G G I + G +K + ++ N A I A E Sbjct 8 FTDGSCLGNP--------GPGGYGAIMRYGKHEKIFSAGFRLTTNNRMEMMAAIVALEAL 59 Query 59 LKKCLPLGGNILVVTDSNYVAKAYNEELDVWASNGFVNNRKKPLKHISKWKSV 111 + C +++ TDS YV + + W G+ KKP+K++ WK + Sbjct 60 TQPCA-----VVLSTDSQYVRQGITSWIHNWKKRGWKTTDKKPVKNVDLWKRL 107 >RecName: Full=Ribonuclease H; Short=RNase H [Legionella pneumophila str. Lens] Sequence ID: Q5WWW5.1 Length: 143 Range 1: 6 to 108 Score:39.3 bits(90), Expect:0.003, Method:Compositional matrix adjust., Identities:29/115(25%), Positives:51/115(44%), Gaps:13/115(11%) Query 1 YTDGSAITSPTKEGHLNAGMGIVYFIN-KDGNLQKQQEWSISLGNHTAQFAEIAAFEFAL 59 YTDG+ +P G G++ N ++ L + + N A I E Sbjct 6 YTDGACKGNPGP-----GGWGVLLRYNGREKTLHGGE--PQTTNNRMELMAAIKGLEALK 58 Query 60 KKCLPLGGNILVVTDSNYVAKAYNEELDVWASNGFVNNRKKPLKHISKWKSVADL 114 + C + + TDS Y+ + E + W NG+ N++K+ +K+ WKS+ +L Sbjct 59 RPC-----EVDLYTDSQYLQQGMKEWIKTWKRNGWRNSKKELVKNAELWKSLDNL 108 >RecName: Full=Ribonuclease H; Short=RNase H [Sodalis glossinidius str. 'morsitans'] Sequence ID: Q2NVF9.1 Length: 163 Range 1: 8 to 141 Score:39.3 bits(90), Expect:0.003, Method:Compositional matrix adjust., Identities:44/161(27%), Positives:67/161(41%), Gaps:36/161(22%) Query 1 YTDGSAITSPTKEGHLNAGMGIVYFINKDGNLQKQQEWSISLG------NHTAQFAEIAA 54 +TDGS + +P G+ G + Y KQ E + S G N A I A Sbjct 8 FTDGSCLGNPGPGGY---GAILRY---------KQHEKTFSAGYRLTTNNRMELMAAIVA 55 Query 55 FEFALKKCLPLGGNILVVTDSNYVAKAYNEELDVWASNGFVNNRKKPLKHISKWKSV-AD 113 E C +++ TDS YV + + + W G+ KKP+K++ W+ + A Sbjct 56 LEALTDAC-----EVVLSTDSQYVRQGITQWIHNWKKRGWKTAYKKPVKNVDLWQRLDAA 110 Query 114 LK--RLRPDVVVTHEPGHQKLDSSPHAYGNNLADQLATQAS 152 ++ LR D V H GH + N D+LA A+ Sbjct 111 IQPHTLRWDWVKGHS-GHPE---------NERCDELARTAA 141 >RecName: Full=Ribonuclease H; Short=RNase H [Marinobacter nauticus VT8] Sequence ID: A1U0U9.1 Length: 147 Range 1: 8 to 140 Score:39.3 bits(90), Expect:0.003, Method:Compositional matrix adjust., Identities:43/157(27%), Positives:60/157(38%), Gaps:30/157(19%) Query 1 YTDGSAITSPTKEGHLNAGMGIVYFINK------DGNLQKQQEWSISLGNHTAQFAEIAA 54 YTDG+ +P G G+V G LQ + N A I Sbjct 8 YTDGACKGNPGP-----GGWGVVLRYGDACKTMHGGELQ-------TTNNRMELMAAIRG 55 Query 55 FEFALKKCLPLGGNILVVTDSNYVAKAYNEELDVWASNGFVNNRKKPLKHISKWKSVADL 114 + C + + TDS YV K E + W NG+ + KKP+K+ W+ + D Sbjct 56 LRELKRAC-----QVELYTDSQYVRKGITEWMSGWKRNGWKTSAKKPVKNADLWQEL-DA 109 Query 115 KRLRPDVVVTHEPGHQKLDSSPHAYGNNLADQLATQA 151 + R V GH S H N LAD+LA + Sbjct 110 ETARHTVNWHWVKGH-----SGHP-DNELADELANRG 140 >RecName: Full=Ribonuclease H; Short=RNase H [Saccharopolyspora erythraea NRRL 2338] Sequence ID: A4FMU3.1 Length: 155 Range 1: 14 to 114 Score:38.9 bits(89), Expect:0.004, Method:Compositional matrix adjust., Identities:28/111(25%), Positives:48/111(43%), Gaps:10/111(9%) Query 1 YTDGSAITSPTKEGHLNAGMGIVYFINKDGNLQKQQEWSISLGNHTAQFAEIAAFEFALK 60 YTDG+ +P G G+V E + N+ + + AL Sbjct 14 YTDGACSGNPGP-----GGWGVVLRYGHHEREMYGGE--TATTNNKMELTAVIEGLAALT 66 Query 61 KCLPLGGNILVVTDSNYVAKAYNEELDVWASNGFVNNRKKPLKHISKWKSV 111 + +PL + + TDS YV K E + W NG++ + K+P+K+ W+ + Sbjct 67 RPVPL---VRIHTDSTYVLKGITEWMRGWKRNGWLTSAKQPVKNADLWRRL 114 >RecName: Full=Ribonuclease H; Short=RNase H [Cronobacter sakazakii ATCC BAA-894] Sequence ID: A7MI34.1 Length: 158 Range 1: 8 to 107 Score:38.9 bits(89), Expect:0.004, Method:Compositional matrix adjust., Identities:30/117(26%), Positives:50/117(42%), Gaps:23/117(19%) Query 1 YTDGSAITSPTKEGHLNAGMGIVYFINKDGNLQKQQEWSISLG------NHTAQFAEIAA 54 +TDGS + +P G+ G + Y KQ E + S G N A I + Sbjct 8 FTDGSCLGNPGPGGY---GAILRY---------KQHERTFSAGYRLTTNNRMELMAAIVS 55 Query 55 FEFALKKCLPLGGNILVVTDSNYVAKAYNEELDVWASNGFVNNRKKPLKHISKWKSV 111 E + C+ + + TDS YV + + + W G+ KKP+K++ W+ + Sbjct 56 LEALREHCI-----VTLSTDSQYVRQGITQWIHNWKKRGWKTAEKKPVKNVDLWQRL 107 >RecName: Full=Ribonuclease H; Short=RNase H [Candidatus Vesicomyidisocius calyptogenae] Sequence ID: A5CX29.1 Length: 148 Range 1: 8 to 145 Score:38.9 bits(89), Expect:0.004, Method:Compositional matrix adjust., Identities:42/158(27%), Positives:68/158(43%), Gaps:23/158(14%) Query 1 YTDGSAITSPTKEGHLNAGMGIVYFINKDGNLQKQQEWSISLGNH---TAQFAEIAAFEF 57 YTDG N G+G K G+ K+ + GN T E+ A Sbjct 8 YTDGGC--------RCNTGIGGWGVWLKYGDYDKKLK-----GNEKKTTNNRMELTATIK 54 Query 58 ALKKCLPLGGNILVVTDSNYVAKAYNEELDVWASNGFVNNRKKPLKHISKWKSVADLKRL 117 AL++ I + TDS YV NE + W + ++K+P+K++ W+ + D+ Sbjct 55 ALEEIKSNQIGIDLFTDSKYVITGINEWMKNWKVKNWETSKKRPVKNVDLWQRL-DVLNK 113 Query 118 RPDVVVTHEPGHQKLDSSPHAYGNNLADQLATQASFKV 155 + DV+ H + GN++AD+LA A K+ Sbjct 114 QHDVIWYWVKSH------SNNKGNDIADELANLAMDKI 145 >RecName: Full=Ribonuclease H; Short=RNase H [Treponema pallidum subsp. pallidum SS14] Sequence ID: B2S2V0.1 Length: 169 >RecName: Full=Ribonuclease H; Short=RNase H [Treponema pallidum subsp. pallidum str. Nichols] Sequence ID: O83372.1 Length: 169 Range 1: 82 to 161 Score:38.9 bits(89), Expect:0.004, Method:Compositional matrix adjust., Identities:25/87(29%), Positives:43/87(49%), Gaps:7/87(8%) Query 69 ILVVTDSNYVAKAYNEELDVWASNGFVNNRKKPLKHISKWKSVADLKRLRPDVVVTHEPG 128 ++VVTDS YV K + + W NG+ K+P+K+ W++++ L D + Sbjct 82 VVVVTDSQYVRKGITQWIHTWKHNGWKTAAKQPVKNKDLWEALSALA----DALSVEWRW 137 Query 129 HQKLDSSPHAYGNNLADQLATQASFKV 155 + P+ N L D+LAT A+ + Sbjct 138 VKGHAGDPY---NELCDRLATDAARRA 161 >RecName: Full=Ribonuclease H; Short=RNase H [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Sequence ID: A6T512.1 Length: 155 Range 1: 8 to 107 Score:38.9 bits(89), Expect:0.005, Method:Compositional matrix adjust., Identities:30/117(26%), Positives:50/117(42%), Gaps:23/117(19%) Query 1 YTDGSAITSPTKEGHLNAGMGIVYFINKDGNLQKQQEWSISLG------NHTAQFAEIAA 54 +TDGS + +P G+ G + Y +Q E + S G N A I A Sbjct 8 FTDGSCLGNPGPGGY---GAIMRY---------RQHEKTFSAGYRLTTNNRMELMAAIVA 55 Query 55 FEFALKKCLPLGGNILVVTDSNYVAKAYNEELDVWASNGFVNNRKKPLKHISKWKSV 111 E + C +++ TDS YV + + + W G+ KKP+K++ W+ + Sbjct 56 LEALKEHC-----EVVLSTDSQYVRQGITQWIHNWKKRGWKTAEKKPVKNVDLWQRL 107 >RecName: Full=Ribonuclease H; Short=RNase H [Escherichia coli HS] Sequence ID: A7ZWF6.1 Length: 155 >RecName: Full=Ribonuclease H; Short=RNase H [Escherichia coli 55989] Sequence ID: B7LHC0.1 Length: 155 Range 1: 8 to 107 Score:38.9 bits(89), Expect:0.005, Method:Compositional matrix adjust., Identities:25/111(23%), Positives:49/111(44%), Gaps:11/111(9%) Query 1 YTDGSAITSPTKEGHLNAGMGIVYFINKDGNLQKQQEWSISLGNHTAQFAEIAAFEFALK 60 +TDGS + +P G+ I+ + ++ ++ + N A I A E + Sbjct 8 FTDGSCLGNPGPGGY----GAILRYRGREKTFSAG--YTRTTNNRMELMAAIVALEALKE 61 Query 61 KCLPLGGNILVVTDSNYVAKAYNEELDVWASNGFVNNRKKPLKHISKWKSV 111 C +++ TDS YV + + + W G+ KKP+K++ W+ + Sbjct 62 HC-----EVILSTDSQYVRQGITQWIHSWKKRGWKTADKKPVKNVDLWQRL 107 >RecName: Full=Ribonuclease H; Short=RNase H [Klebsiella pneumoniae 342] Sequence ID: B5Y1G2.1 Length: 155 Range 1: 8 to 107 Score:38.9 bits(89), Expect:0.005, Method:Compositional matrix adjust., Identities:30/117(26%), Positives:50/117(42%), Gaps:23/117(19%) Query 1 YTDGSAITSPTKEGHLNAGMGIVYFINKDGNLQKQQEWSISLG------NHTAQFAEIAA 54 +TDGS + +P G+ G + Y +Q E + S G N A I A Sbjct 8 FTDGSCLGNPGPGGY---GAIMRY---------RQHEKTFSAGYRLTTNNRMELMAAIVA 55 Query 55 FEFALKKCLPLGGNILVVTDSNYVAKAYNEELDVWASNGFVNNRKKPLKHISKWKSV 111 E + C +++ TDS YV + + + W G+ KKP+K++ W+ + Sbjct 56 LEALKEHC-----EVVLSTDSQYVRQGITQWIHNWKKRGWKTAEKKPVKNVDLWQRL 107 >RecName: Full=Ribonuclease H; Short=RNase H [Cupriavidus necator H16] Sequence ID: Q0K8W6.1 Length: 145 Range 1: 44 to 134 Score:38.5 bits(88), Expect:0.006, Method:Compositional matrix adjust., Identities:27/98(28%), Positives:43/98(43%), Gaps:14/98(14%) Query 44 NHTAQFAEIAAFEFALKKCLPLGGNILVVTDSNYVAKAYNEELDVWASNGFVNNRKKPLK 103 N A I A + C+ + V TDS YV K +E L W + G+ KKP+K Sbjct 44 NRMEMTAVIEALRALKRPCV-----VRVYTDSQYVQKGISEWLPGWKARGWKTADKKPVK 98 Query 104 HISKWKSVADLKRLRPDVVVTH-------EPGHQKLDS 134 + W+ + L +P + H PG+++ D+ Sbjct 99 NADLWQELDTL--AQPHQISWHWVRGHNGHPGNERADA 134 >RecName: Full=Ribonuclease H; Short=RNase H [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Sequence ID: A1AW38.1 Length: 146 Range 1: 7 to 144 Score:38.1 bits(87), Expect:0.007, Method:Compositional matrix adjust., Identities:43/156(28%), Positives:66/156(42%), Gaps:19/156(12%) Query 1 YTDGSAITSPTKEGHLNAGMGI-VYFINKDGNLQKQQEWSISLGNHTAQFAEIAAFEFAL 59 YTDG +P G G+ + + + D LQ Q+ + N A I A E Sbjct 7 YTDGGCRGNPGI-----GGWGVWLKYGDYDKKLQGVQQ--DTTNNQMELTATIKALEVIK 59 Query 60 KKCLPLGGNILVVTDSNYVAKAYNEELDVWASNGFVNNRKKPLKHISKWKSVADLKRLRP 119 + I + TDS YV +E + W + G+ KKP+K+I W+ + D+ + Sbjct 60 SNDIA----IDLFTDSKYVITGISEWIKNWKAKGWKTANKKPVKNIDLWQRL-DVLNNQH 114 Query 120 DVVVTHEPGHQKLDSSPHAYGNNLADQLATQASFKV 155 +V GH GN++AD LA A K+ Sbjct 115 NVTWHWVKGH------SGDKGNDMADALANLAMDKI 144 >RecName: Full=Ribonuclease H; Short=RNase H [Paracoccus denitrificans PD1222] Sequence ID: A1B840.1 Length: 155 Range 1: 7 to 149 Score:38.1 bits(87), Expect:0.007, Method:Compositional matrix adjust., Identities:43/156(28%), Positives:63/156(40%), Gaps:15/156(9%) Query 1 YTDGSAITSPTKEGHLNAGMGIVYFINKDGNLQKQQEWSISLGNHTAQFAEIAAFEFALK 60 +TDG+ +P G G++ + K++E S T E+ A AL+ Sbjct 7 WTDGACSGNPGP-----GGWGVLMRAMDGDRMLKERELSGGEAETTNNRMELMAAISALE 61 Query 61 KCLPLGGNILVVTDSNYVAKAYNEELDVWASNGFVNNRKKPLKHISKWKSVADLKRLRPD 120 L I V TDS YV + + W NG+ +KP+K+ W+ + D + R Sbjct 62 -ALTRPSEITVTTDSAYVKNGVTQWIHGWKKNGWRTADRKPVKNADLWQRL-DAAQARHQ 119 Query 121 VVVTHEPGHQKLDSSPHAYGNNLADQLAT--QASFK 154 V GH P N AD+LA A FK Sbjct 120 VRWEWIKGHA---GHPE---NERADELARAGMAPFK 149 >RecName: Full=Ribonuclease H; Short=RNase H [Cupriavidus metallidurans CH34] Sequence ID: Q1LL89.1 Length: 145 Range 1: 39 to 134 Score:38.1 bits(87), Expect:0.008, Method:Compositional matrix adjust., Identities:25/103(24%), Positives:47/103(45%), Gaps:14/103(13%) Query 39 SISLGNHTAQFAEIAAFEFALKKCLPLGGNILVVTDSNYVAKAYNEELDVWASNGFVNNR 98 S + N A I A + C+ + + TDS YV K +E + W + G+ Sbjct 39 SPTTNNRMELMAVIEALRALKRPCI-----VNIYTDSQYVQKGISEWIHGWKARGWKTAD 93 Query 99 KKPLKHISKWKSVADLKRLRPDVVVTH-------EPGHQKLDS 134 KKP+K+ W+++ + + +P + H PG+++ D+ Sbjct 94 KKPVKNADLWQALDEAQ--KPHQITWHWVRGHNGHPGNERADA 134 >RecName: Full=Ribonuclease H; Short=RNase H [Escherichia coli O139:H28 str. E24377A] Sequence ID: A7ZHV1.1 Length: 155 >RecName: Full=Ribonuclease H; Short=RNase H [Escherichia coli ATCC 8739] Sequence ID: B1IPU4.1 Length: 155 >RecName: Full=Ribonuclease H; Short=RNase H [Escherichia coli SMS-3-5] Sequence ID: B1LHM3.1 Length: 155 >RecName: Full=Ribonuclease H; Short=RNase H [Escherichia coli str. K-12 substr. DH10B] Sequence ID: B1XD78.1 Length: 155 >RecName: Full=Ribonuclease H; Short=RNase H [Shigella boydii CDC 3083-94] Sequence ID: B2U352.1 Length: 155 >RecName: Full=Ribonuclease H; Short=RNase H [Escherichia coli O157:H7 str. EC4115] Sequence ID: B5Z0I8.1 Length: 155 >RecName: Full=Ribonuclease H; Short=RNase H [Escherichia coli SE11] Sequence ID: B6HZS7.1 Length: 155 >RecName: Full=Ribonuclease H; Short=RNase H [Escherichia fergusonii ATCC 35469] Sequence ID: B7LW89.1 Length: 155 >RecName: Full=Ribonuclease H; Short=RNase H [Escherichia coli IAI1] Sequence ID: B7M213.1 Length: 155 >RecName: Full=Ribonuclease H; Short=RNase H [Escherichia coli S88] Sequence ID: B7MBJ0.1 Length: 155 >RecName: Full=Ribonuclease H; Short=RNase H [Escherichia coli ED1a] Sequence ID: B7MQ23.1 Length: 155 >RecName: Full=Ribonuclease H; Short=RNase H [Escherichia coli UMN026] Sequence ID: B7N876.1 Length: 155 >RecName: Full=Ribonuclease H; Short=RNase H [Escherichia coli IAI39] Sequence ID: B7NKW4.1 Length: 155 >RecName: Full=Ribonuclease H; Short=RNase H [Escherichia coli BW2952] Sequence ID: C4ZRV1.1 Length: 155 >RecName: Full=Ribonuclease HI; Short=RNase HI; AltName: Full=Ribonuclease H; Short=RNase H [Escherichia coli K-12] Sequence ID: P0A7Y4.1 Length: 155 >RecName: Full=Ribonuclease HI; Short=RNase HI [Escherichia coli CFT073] Sequence ID: P0A7Y5.1 Length: 155 >RecName: Full=Ribonuclease HI; Short=RNase HI [Escherichia coli O157:H7] Sequence ID: P0A7Y6.1 Length: 155 >RecName: Full=Ribonuclease HI; Short=RNase HI [Shigella flexneri] Sequence ID: P0A7Y7.1 Length: 155 >RecName: Full=Ribonuclease H; Short=RNase H [Shigella boydii Sb227] Sequence ID: Q325T2.1 Length: 155 >RecName: Full=Ribonuclease H; Short=RNase H [Shigella dysenteriae Sd197] Sequence ID: Q32JP9.1 Length: 155 >RecName: Full=Ribonuclease H; Short=RNase H [Shigella sonnei Ss046] Sequence ID: Q3Z5E9.1 Length: 155 Range 1: 8 to 107 Score:38.1 bits(87), Expect:0.008, Method:Compositional matrix adjust., Identities:25/111(23%), Positives:49/111(44%), Gaps:11/111(9%) Query 1 YTDGSAITSPTKEGHLNAGMGIVYFINKDGNLQKQQEWSISLGNHTAQFAEIAAFEFALK 60 +TDGS + +P G+ I+ + ++ ++ + N A I A E + Sbjct 8 FTDGSCLGNPGPGGY----GAILRYRGREKTFSAG--YTRTTNNRMELMAAIVALEALKE 61 Query 61 KCLPLGGNILVVTDSNYVAKAYNEELDVWASNGFVNNRKKPLKHISKWKSV 111 C +++ TDS YV + + + W G+ KKP+K++ W+ + Sbjct 62 HC-----EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRL 107 >RecName: Full=Ribonuclease H; Short=RNase H [Nitrobacter hamburgensis X14] Sequence ID: Q1QH30.1 Length: 151 Range 1: 49 to 144 Score:38.1 bits(87), Expect:0.009, Method:Compositional matrix adjust., Identities:35/109(32%), Positives:48/109(44%), Gaps:14/109(12%) Query 44 NHTAQFAEIAAFEFALKKCLPLGGNILVVTDSNYVAKAYNEELDVWASNGFVNNRKKPLK 103 N A I+A E ALKK ++ + TDS YV + + W NG+ KKP+K Sbjct 49 NRMELLAAISALE-ALKKA----ASVDLTTDSQYVRQGITSWIHNWKRNGWRTADKKPVK 103 Query 104 HISKWKSVADLKRLRPDVVVTHE-PGHQKLDSSPHAYGNNLADQLATQA 151 + W+ + L+P V H GH D N ADQLA + Sbjct 104 NADLWQRLDTA--LQPHQVRWHWIKGHAGHDE------NERADQLAREG 144 >RecName: Full=Ribonuclease H; Short=RNase H [Bordetella pertussis Tohama I] Sequence ID: Q7VRX8.1 Length: 155 Range 1: 53 to 148 Score:37.7 bits(86), Expect:0.010, Method:Compositional matrix adjust., Identities:32/108(30%), Positives:43/108(39%), Gaps:12/108(11%) Query 44 NHTAQFAEIAAFEFALKKCLPLGGNILVVTDSNYVAKAYNEELDVWASNGFVNNRKKPLK 103 N A I + C + + TDS YV K E L W G+ KKP+K Sbjct 53 NRMELMAVIEGLRALKRPC-----RVTIHTDSQYVMKGMTEWLANWKRRGWRTADKKPVK 107 Query 104 HISKWKSVADLKRLRPDVVVTHEPGHQKLDSSPHAYGNNLADQLATQA 151 ++ W+++ D + R V GH P GN AD LA Q Sbjct 108 NVELWQAL-DEQVGRHQVQWRWVRGHA---GDP---GNERADALANQG 148 >RecName: Full=Ribonuclease H; Short=RNase H [Bradyrhizobium sp. ORS 278] Sequence ID: A4Z216.1 Length: 154 Range 1: 10 to 139 Score:37.7 bits(86), Expect:0.011, Method:Compositional matrix adjust., Identities:40/152(26%), Positives:62/152(40%), Gaps:26/152(17%) Query 1 YTDGSAITSPTKEGHLNAGMGIVYFINKDGNLQKQQEWSISLGNHTAQFAEIAAFEFALK 60 +TDG+ +P G I+ F +K+ L+ + + N A I+A E K Sbjct 10 FTDGACSGNPGPGGW----GAILRFGDKEKELKGGE--PHTTNNRMELMAAISALEALKK 63 Query 61 KCLPLGGNILVVTDSNYVAKAYNEELDVWASNGFVNNRKKPLKHISKWKSVADLKRLRPD 120 C + + TDS YV + + W NG+ KKP+K+ W+ + L+P Sbjct 64 SC-----QVELYTDSQYVRQGITGWIHGWKRNGWKTADKKPVKNAELWQRLDAA--LKPH 116 Query 121 VVVTH----EPGHQKLDSSPHAYGNNLADQLA 148 + H GH + N ADQLA Sbjct 117 KINWHWVKGHAGHPE---------NERADQLA 139 >RecName: Full=Ribonuclease H; Short=RNase H [Serratia proteamaculans 568] Sequence ID: A8GA77.1 Length: 155 Range 1: 8 to 107 Score:37.7 bits(86), Expect:0.011, Method:Compositional matrix adjust., Identities:31/117(26%), Positives:47/117(40%), Gaps:23/117(19%) Query 1 YTDGSAITSPTKEGHLNAGMGIVYFINKDGNLQKQQEWSISLG------NHTAQFAEIAA 54 +TDGS + +P G+ G + Y KQ E + S G N A I A Sbjct 8 FTDGSCLGNPGPGGY---GAILRY---------KQTEKTFSAGFRLTTNNRMEMMAAIVA 55 Query 55 FEFALKKCLPLGGNILVVTDSNYVAKAYNEELDVWASNGFVNNRKKPLKHISKWKSV 111 E C + + TDS YV + + W G+ KKP+K++ W+ + Sbjct 56 LEALTTPC-----EVTLSTDSQYVRQGITTWIHNWKKRGWKTADKKPVKNVDLWQRL 107 >RecName: Full=Ribonuclease H; Short=RNase H [Bordetella bronchiseptica RB50] Sequence ID: Q7WCJ8.1 Length: 155 Range 1: 53 to 148 Score:37.7 bits(86), Expect:0.011, Method:Compositional matrix adjust., Identities:28/108(26%), Positives:42/108(38%), Gaps:12/108(11%) Query 44 NHTAQFAEIAAFEFALKKCLPLGGNILVVTDSNYVAKAYNEELDVWASNGFVNNRKKPLK 103 N A I + C + + TDS YV K E L W G+ KKP+K Sbjct 53 NRMELMAVIEGLRALKRPC-----RVTIHTDSQYVMKGMTEWLANWKRRGWRTADKKPVK 107 Query 104 HISKWKSVADLKRLRPDVVVTHEPGHQKLDSSPHAYGNNLADQLATQA 151 ++ W+++ + V H+ + + GN AD LA Q Sbjct 108 NVELWQAL-------DEQVGRHQVQWRWVRGHAGDPGNERADALANQG 148 >RecName: Full=Ribonuclease H; Short=RNase H [Yersinia enterocolitica subsp. enterocolitica 8081] Sequence ID: A1JKB1.1 Length: 154 Range 1: 8 to 107 Score:37.7 bits(86), Expect:0.013, Method:Compositional matrix adjust., Identities:29/117(25%), Positives:48/117(41%), Gaps:23/117(19%) Query 1 YTDGSAITSPTKEGHLNAGMGIVYFINKDGNLQKQQEWSISLG------NHTAQFAEIAA 54 +TDGS + +P G+ G + Y KQ E + S G N A I A Sbjct 8 FTDGSCLGNPGPGGY---GAILRY---------KQHEKTFSAGYFLTTNNRMELMAAIVA 55 Query 55 FEFALKKCLPLGGNILVVTDSNYVAKAYNEELDVWASNGFVNNRKKPLKHISKWKSV 111 E C + + TDS YV + + + W G+ +KP++++ W+ + Sbjct 56 LEALTSPC-----EVTLSTDSQYVRQGITQWIHNWKKRGWKTTDRKPVRNVDLWQRL 107 >RecName: Full=Ribonuclease H; Short=RNase H [Dinoroseobacter shibae DFL 12 = DSM 16493] Sequence ID: A8LLC1.1 Length: 157 Range 1: 7 to 149 Score:37.0 bits(84), Expect:0.019, Method:Compositional matrix adjust., Identities:46/157(29%), Positives:67/157(42%), Gaps:17/157(10%) Query 1 YTDGSAITSPTKEGHLNAGMGIVYFINKDGN-LQKQQEWSISLGNHTAQFAEIAAFEFAL 59 YTDG+ +P G G + I +DG+ + K++ T E+ A AL Sbjct 7 YTDGACSGNPGP-----GGWGAL-LIARDGDTVVKERALKGGEAETTNNRMELLAAIHAL 60 Query 60 KKCLPLGGNILVVTDSNYVAKAYNEELDVWASNGFVNNRKKPLKHISKWKSVADLKRLRP 119 + L + VVTDS YV + W NG+ + KKP+K+ W+ + D + R Sbjct 61 E-ALERPARLTVVTDSAYVKGGVTGWIHGWKRNGWKTSTKKPVKNEDLWRRL-DAAQARH 118 Query 120 DVVVTHEPGHQKLDSSPHAYGNNLADQLATQ--ASFK 154 +V GH P N AD LA + A FK Sbjct 119 EVQWEWVKGHA---GHPE---NERADALAREGMAPFK 149 >RecName: Full=Ribonuclease H; Short=RNase H [Yersinia pestis Pestoides F] Sequence ID: A4TL54.1 Length: 154 >RecName: Full=Ribonuclease H; Short=RNase H [Yersinia pseudotuberculosis IP 31758] Sequence ID: A7FFK7.1 Length: 154 >RecName: Full=Ribonuclease H; Short=RNase H [Yersinia pestis Angola] Sequence ID: A9R0G0.1 Length: 154 >RecName: Full=Ribonuclease H; Short=RNase H [Yersinia pseudotuberculosis YPIII] Sequence ID: B1JR46.1 Length: 154 >RecName: Full=Ribonuclease H; Short=RNase H [Yersinia pseudotuberculosis PB1/+] Sequence ID: B2KAC9.1 Length: 154 >RecName: Full=Ribonuclease H; Short=RNase H [Yersinia pestis Antiqua] Sequence ID: Q1CAJ5.1 Length: 154 >RecName: Full=Ribonuclease H; Short=RNase H [Yersinia pestis Nepal516] Sequence ID: Q1CFI6.1 Length: 154 >RecName: Full=Ribonuclease H; Short=RNase H [Yersinia pseudotuberculosis IP 32953] Sequence ID: Q667M7.1 Length: 154 >RecName: Full=Ribonuclease HI; Short=RNase HI [Yersinia pestis] Sequence ID: Q8ZH30.1 Length: 154 Range 1: 8 to 107 Score:37.0 bits(84), Expect:0.019, Method:Compositional matrix adjust., Identities:29/117(25%), Positives:48/117(41%), Gaps:23/117(19%) Query 1 YTDGSAITSPTKEGHLNAGMGIVYFINKDGNLQKQQEWSISLG------NHTAQFAEIAA 54 +TDGS + +P G+ G + Y KQ E + S G N A I A Sbjct 8 FTDGSCLGNPGPGGY---GAILRY---------KQHEKTFSAGYYLTTNNRMELMAAIVA 55 Query 55 FEFALKKCLPLGGNILVVTDSNYVAKAYNEELDVWASNGFVNNRKKPLKHISKWKSV 111 E C + + TDS YV + + + W G+ +KP++++ W+ + Sbjct 56 LEALTSPC-----EVTLSTDSQYVRQGITQWIHNWKKRGWKTADRKPVRNVDLWQRL 107 >RecName: Full=Ribonuclease H; Short=RNase H [Rhodopseudomonas palustris HaA2] Sequence ID: Q2J0F8.1 Length: 161 Range 1: 18 to 147 Score:37.0 bits(84), Expect:0.021, Method:Compositional matrix adjust., Identities:41/151(27%), Positives:65/151(43%), Gaps:24/151(15%) Query 1 YTDGSAITSPTKEGHLNAGMGIVYFINKDGNLQKQQEWSISLGNHTAQFAEIAAFEFALK 60 +TDG+ +P G I+ F + + L+ + + + N A I+A E + Sbjct 18 HTDGACSGNPGPGGW----GAILKFGDTEKELKGGE--AHTTNNRMELLAAISALEALTR 71 Query 61 KCLPLGGNILVVTDSNYVAKAYNEELDVWASNGFVNNRKKPLKHISKWKSV-ADLK--RL 117 C + + TDS YV + W NG+ KKP+K++ W+ + A LK ++ Sbjct 72 PC-----TVDLYTDSQYVKNGIGSWIHNWKRNGWKTADKKPVKNVDLWQRLDAALKSHQV 126 Query 118 RPDVVVTHEPGHQKLDSSPHAYGNNLADQLA 148 R V H GH + N ADQLA Sbjct 127 RWHWVKGH-AGHDE---------NERADQLA 147 >RecName: Full=Ribonuclease H; Short=RNase H [Escherichia coli O127:H6 str. E2348/69] Sequence ID: B7UJB0.1 Length: 155 >RecName: Full=Ribonuclease H; Short=RNase H [Escherichia coli 536] Sequence ID: Q0TLC3.1 Length: 155 Range 1: 8 to 107 Score:36.6 bits(83), Expect:0.029, Method:Compositional matrix adjust., Identities:25/111(23%), Positives:48/111(43%), Gaps:11/111(9%) Query 1 YTDGSAITSPTKEGHLNAGMGIVYFINKDGNLQKQQEWSISLGNHTAQFAEIAAFEFALK 60 +TDGS + +P G+ I+ + + ++ + N A I A E + Sbjct 8 FTDGSCLGNPGPGGY----GAILRYRGHEKTFSAG--YTRTTNNRMELMAAIVALEALKE 61 Query 61 KCLPLGGNILVVTDSNYVAKAYNEELDVWASNGFVNNRKKPLKHISKWKSV 111 C +++ TDS YV + + + W G+ KKP+K++ W+ + Sbjct 62 HC-----EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRL 107 >RecName: Full=Ribonuclease H; Short=RNase H [Rhodopseudomonas palustris BisB5] Sequence ID: Q131J2.1 Length: 150 Range 1: 7 to 142 Score:36.6 bits(83), Expect:0.032, Method:Compositional matrix adjust., Identities:42/157(27%), Positives:65/157(41%), Gaps:24/157(15%) Query 1 YTDGSAITSPTKEGHLNAGMGIVYFINKDGNLQKQQEWSISLGNHTAQFAEIAAFEFALK 60 +TDG+ +P G I+ F + + L+ + + + N A I+A E + Sbjct 7 HTDGACSGNPGPGGW----GAILKFGDTEKELKGGE--AHTTNNRMELLAAISALEALTR 60 Query 61 KCLPLGGNILVVTDSNYVAKAYNEELDVWASNGFVNNRKKPLKHISKWKSV-ADLK--RL 117 C + + TDS YV + W NG+ KKP+K++ W+ + A LK + Sbjct 61 PC-----TVDLYTDSQYVKNGIGSWIHNWKRNGWKTADKKPVKNVDLWQRLDAALKSHEV 115 Query 118 RPDVVVTHEPGHQKLDSSPHAYGNNLADQLATQASFK 154 R V H GH + N ADQLA K Sbjct 116 RWHWVKGH-AGHDE---------NERADQLARDGLTK 142 >RecName: Full=Ribonuclease H; Short=RNase H [Vibrio atlanticus LGP32] Sequence ID: B7VIP1.1 Length: 154 Range 1: 8 to 107 Score:36.2 bits(82), Expect:0.034, Method:Compositional matrix adjust., Identities:26/113(23%), Positives:52/113(46%), Gaps:15/113(13%) Query 1 YTDGSAITSPTKEGHLNAGMGIVYFINKDGNLQKQ--QEWSISLGNHTAQFAEIAAFEFA 58 +TDGS + +P G+ GIV K ++K + ++++ N A + A + Sbjct 8 FTDGSCLGNPGPGGY-----GIVLRYRK---VEKTLAEGFTLTTNNRMEMLAAVVALQAL 59 Query 59 LKKCLPLGGNILVVTDSNYVAKAYNEELDVWASNGFVNNRKKPLKHISKWKSV 111 + C ++++ TDS YV + + + W + KKP+K+ W+ + Sbjct 60 KEPC-----SVILTTDSQYVRQGITQWIHNWKKRDWKTADKKPVKNADLWQRL 107 >RecName: Full=Ribonuclease H; Short=RNase H [Erythrobacter litoralis HTCC2594] Sequence ID: Q2ND39.1 Length: 144 Range 1: 7 to 140 Score:35.8 bits(81), Expect:0.046, Method:Compositional matrix adjust., Identities:38/152(25%), Positives:63/152(41%), Gaps:18/152(11%) Query 1 YTDGSAITSPTKEGHLNAGMGIVYFINKDGNLQKQQEWSISLGNHTAQFAEIAAFEFALK 60 +TDG+ +P G G++ + K E + N A I ++ Sbjct 7 FTDGACKGNPGP-----GGWGVLLRMGKHEKELSGGE-PETTNNRMELRAAIEGLNALIE 60 Query 61 KCLPLGGNILVVTDSNYVAKAYNEELDVWASNGFVNNRKKPLKHISKWKSVADLKRLRPD 120 C + + TDS YV + + W G+VN KKP+++ W + + + LR Sbjct 61 PC-----EVELYTDSKYVVDGITKWVHGWKKRGWVNASKKPVRNDDLWHDLIEAE-LRHK 114 Query 121 VVVTHEPGHQKLDSSPHAYGNNLADQLATQAS 152 V GH + HA N AD+LA++A+ Sbjct 115 VTWHWVKGH-----NGHAE-NERADRLASEAA 140