BLASTP 2.2.28+


Query= HSLV_ECOLI P0A7B8 ATP-dependent protease subunit HslV (3.4.25.2)
(Heat shock protein HslV)

Length=176

Subject= D89965_1 [66 - 155] Rattus norvegicus mRNA for RSS, complete cds.

Length=30


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 4472


Query= HSLV_ECOLI P0A7B8 ATP-dependent protease subunit HslV (3.4.25.2)
(Heat shock protein HslV)

Length=176

Subject= D89965_2 [56 - 169] Rattus norvegicus mRNA for RSS, complete cds.

Length=38


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 4472


Query= HSLV_ECOLI P0A7B8 ATP-dependent protease subunit HslV (3.4.25.2)
(Heat shock protein HslV)

Length=176

Subject= D89965_3 [163 - 432] Rattus norvegicus mRNA for RSS, complete cds.

Length=90


 Score = 12.3 bits (20),  Expect = 2.8, Method: Compositional matrix adjust.
 Identities = 4/10 (40%), Positives = 6/10 (60%), Gaps = 0/10 (0%)

Query  55  FTLFELFERK  64
           FT  +  +RK
Sbjct  8   FTFKQFEQRK  17



Lambda      K        H        a         alpha
   0.318    0.134    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 4472


Query= HSLV_ECOLI P0A7B8 ATP-dependent protease subunit HslV (3.4.25.2)
(Heat shock protein HslV)

Length=176

Subject= D89965_4 [218 - 3] (REVERSE SENSE) Rattus norvegicus mRNA for RSS,
complete cds.

Length=72


***** No hits found *****



Lambda      K        H        a         alpha
   0.318    0.134    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 4472


Query= HSLV_ECOLI P0A7B8 ATP-dependent protease subunit HslV (3.4.25.2)
(Heat shock protein HslV)

Length=176

Subject= D89965_5 [294 - 1] (REVERSE SENSE) Rattus norvegicus mRNA for RSS,
complete cds.

Length=98


 Score =  200 bits (509),  Expect = 4e-71, Method: Compositional matrix adjust.
 Identities = 98/98 (100%), Positives = 98/98 (100%), Gaps = 0/98 (0%)

Query  28   MKGNVKKVRRLYNDKVIAGFAGGTADAFTLFELFERKLEMHQGHLVKAAVELAKDWRTDR  87
            MKGNVKKVRRLYNDKVIAGFAGGTADAFTLFELFERKLEMHQGHLVKAAVELAKDWRTDR
Sbjct  1    MKGNVKKVRRLYNDKVIAGFAGGTADAFTLFELFERKLEMHQGHLVKAAVELAKDWRTDR  60

Query  88   MLRKLEALLAVADETASLIITGNGDVVQPENDLIAIGS  125
            MLRKLEALLAVADETASLIITGNGDVVQPENDLIAIGS
Sbjct  61   MLRKLEALLAVADETASLIITGNGDVVQPENDLIAIGS  98



Lambda      K        H        a         alpha
   0.318    0.134    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 4472




Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40