##gff-version 3
#!gff-spec-version 1.20
#!processor NCBI annotwriter
##sequence-region NC_009952.1 1 3789584
##species http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=398580
NC_009952.1	RefSeq	region	1	3789584	.	+	.	ID=id0;Name=ANONYMOUS;Dbxref=taxon:398580;Is_circular=true;gbkey=Src;genome=chromosome;mol_type=genomic DNA;old-name=Dinoroseobacter shibae DFL 12;strain=DFL 12
NC_009952.1	RefSeq	gene	128	1567	.	+	.	ID=gene0;Name=gltD;Dbxref=GeneID:5713708;gbkey=Gene;gene=gltD;locus_tag=Dshi_0001
NC_009952.1	RefSeq	CDS	128	1567	.	+	0	ID=cds0;Name=YP_001531351.1;Parent=gene0;Note=function undetermined%3B similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain;Dbxref=Genbank:YP_001531351.1,GeneID:5713708;gbkey=CDS;gene=gltD;product=putative oxidoreductase;protein_id=YP_001531351.1;transl_table=11
NC_009952.1	RefSeq	gene	1782	6320	.	+	.	ID=gene1;Name=gltB;Dbxref=GeneID:5711754;gbkey=Gene;gene=gltB;locus_tag=Dshi_0002
NC_009952.1	RefSeq	CDS	1782	6320	.	+	0	ID=cds1;Name=YP_001531352.1;Parent=gene1;Note=PFAM: glutamine amidotransferase class-II%3B glutamate synthase alpha subunit domain protein%3B ferredoxin-dependent glutamate synthase%3B glutamate synthase KEGG: sit:TM1040_2823 glutamate synthase %28ferredoxin%29%2C involved in nitrogen metabolism PATH: rn00910;Dbxref=Genbank:YP_001531352.1,GeneID:5711754;gbkey=CDS;gene=gltB;product=glutamate synthase;protein_id=YP_001531352.1;transl_table=11
NC_009952.1	RefSeq	gene	7257	8114	.	-	.	ID=gene2;Name=Dshi_0004;Dbxref=GeneID:5711756;gbkey=Gene;locus_tag=Dshi_0004
NC_009952.1	RefSeq	CDS	7257	8114	.	-	0	ID=cds2;Name=YP_001531354.1;Parent=gene2;Note=PFAM: conserved hypothetical protein KEGG: sil:SPO3342 decarboxylase family protein%2C Homologous Superfamily %28CATH Code: 3.40.50.80%29%2C Nucleotide-binding domain of ferredoxin-NADP reductase %28FNR%29 module;Dbxref=Genbank:YP_001531354.1,GeneID:5711756;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531354.1;transl_table=11
NC_009952.1	RefSeq	gene	8220	8924	.	+	.	ID=gene3;Name=Dshi_0005;Dbxref=GeneID:5711757;gbkey=Gene;locus_tag=Dshi_0005
NC_009952.1	RefSeq	CDS	8220	8924	.	+	0	ID=cds3;Name=YP_001531355.1;Parent=gene3;Note=interPro: short signalpeptide N-terminal%2C bad swissprot hit to Sterol 3-beta-glucosyltransferase from Candida albicans and bad Ref NP hit to 4-alpha-glucanotransferase from Fusobacterium nucleatum subsp. nucleatum ATCC 25586;Dbxref=Genbank:YP_001531355.1,GeneID:5711757;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531355.1;transl_table=11
NC_009952.1	RefSeq	gene	9028	9855	.	+	.	ID=gene4;Name=dapD;Dbxref=GeneID:5711758;gbkey=Gene;gene=dapD;locus_tag=Dshi_0006
NC_009952.1	RefSeq	CDS	9028	9855	.	+	0	ID=cds4;Name=YP_001531356.1;Parent=gene4;Note=catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway;Dbxref=Genbank:YP_001531356.1,GeneID:5711758;gbkey=CDS;gene=dapD;product=2%2C3%2C4%2C5-tetrahydropyridine-2%2C6-carboxylate N-succinyltransferase;protein_id=YP_001531356.1;transl_table=11
NC_009952.1	RefSeq	gene	10683	11255	.	+	.	ID=gene5;Name=Dshi_0008;Dbxref=GeneID:5711760;gbkey=Gene;locus_tag=Dshi_0008
NC_009952.1	RefSeq	CDS	10683	11255	.	+	0	ID=cds5;Name=YP_001531358.1;Parent=gene5;Note=bad swissprot to LPS-assembly protein precursor %28Organic solvent tolerance protein%29 from Pseudomonas aeruginosa UCBPP-PA14 and bad ref ZP hit to putative chemotaxis protein from Erythrobacter sp. NAP1%2C short signalpeptide and transmembranedomain%2C conserved domain: Guanylate kinase%2FL-type calcium channel region %28Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP%29;Dbxref=Genbank:YP_001531358.1,GeneID:5711760;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531358.1;transl_table=11
NC_009952.1	RefSeq	gene	11747	11953	.	-	.	ID=gene6;Name=csp2;Dbxref=GeneID:5711761;gbkey=Gene;gene=csp2;locus_tag=Dshi_0009
NC_009952.1	RefSeq	CDS	11747	11953	.	-	0	ID=cds6;Name=YP_001531359.1;Parent=gene6;Note=PFAM: Cold-shock protein DNA-binding SMART: Cold shock protein KEGG: rde:RD1_1402 cold shock protein CspA-related protein%2C putative;Dbxref=Genbank:YP_001531359.1,GeneID:5711761;gbkey=CDS;gene=csp2;product=cold-shock DNA-binding domain-containing protein;protein_id=YP_001531359.1;transl_table=11
NC_009952.1	RefSeq	gene	12121	12642	.	-	.	ID=gene7;Name=Dshi_0010;Dbxref=GeneID:5711588;gbkey=Gene;locus_tag=Dshi_0010
NC_009952.1	RefSeq	CDS	12121	12642	.	-	0	ID=cds7;Name=YP_001531360.1;Parent=gene7;Note=PFAM: protein of unknown function DUF305 KEGG: psa:PST_3374 hypothetical protein%2C conserved in bacteria;Dbxref=Genbank:YP_001531360.1,GeneID:5711588;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531360.1;transl_table=11
NC_009952.1	RefSeq	gene	12777	13124	.	+	.	ID=gene8;Name=Dshi_0011;Dbxref=GeneID:5711589;gbkey=Gene;locus_tag=Dshi_0011
NC_009952.1	RefSeq	CDS	12777	13124	.	+	0	ID=cds8;Name=YP_001531361.1;Parent=gene8;Note=KEGG: rsq:Rsph17025_0047 hypothetical protein%2C bad swissprot hit to Multiple PDZ domain protein from rattus norvegicus involved in cell junction%2Fcell projection%3B Immunoglobulin V-Type%2C subgroup domain %28Eukaryota%29 from T cell surface glycoproteins%2C junction adhesion molecules %2C cell surface presentation%3F;Dbxref=Genbank:YP_001531361.1,GeneID:5711589;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531361.1;transl_table=11
NC_009952.1	RefSeq	gene	13129	14268	.	+	.	ID=gene9;Name=dapE1;Dbxref=GeneID:5711590;gbkey=Gene;gene=dapE1;locus_tag=Dshi_0012
NC_009952.1	RefSeq	CDS	13129	14268	.	+	0	ID=cds9;Name=YP_001531362.1;Parent=gene9;Note=dapE-encoded N-succinyl-L%2CL-diaminopimelic acid desuccinylase %28DapE%29%2C catalyzes the hydrolysis of N-succinyl-L%2CLdiaminopimelate L%2CL-SDAP to L%2CL-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.;Dbxref=Genbank:YP_001531362.1,GeneID:5711590;gbkey=CDS;gene=dapE1;product=succinyl-diaminopimelate desuccinylase;protein_id=YP_001531362.1;transl_table=11
NC_009952.1	RefSeq	gene	14265	14693	.	+	.	ID=gene10;Name=elaA;Dbxref=GeneID:5711591;gbkey=Gene;gene=elaA;locus_tag=Dshi_0013
NC_009952.1	RefSeq	CDS	14265	14693	.	+	0	ID=cds10;Name=YP_001531363.1;Parent=gene10;Note=PFAM: GCN5-related N-acetyltransferase KEGG: rsh:Rsph17029_2788 GCN5-related N-acetyltransferase;Dbxref=Genbank:YP_001531363.1,GeneID:5711591;gbkey=CDS;gene=elaA;product=N-acetyltransferase GCN5;protein_id=YP_001531363.1;transl_table=11
NC_009952.1	RefSeq	gene	14693	15271	.	+	.	ID=gene11;Name=elaA;Dbxref=GeneID:5711592;gbkey=Gene;gene=elaA;locus_tag=Dshi_0014
NC_009952.1	RefSeq	CDS	14693	15271	.	+	0	ID=cds11;Name=YP_001531364.1;Parent=gene11;Note=KEGG: sil:SPO3331 hypothetical protein%2C Uncharacterized protein conserved in bacteria COG3222%2C bad swissprot hit to Carboxylesterase bioH %28Biotin synthesis protein bioH%29 from Escherichia coli%2C Also displays a weak thioesterase activity. Can form a complex with CoA%2C and may be involved in the condensation of CoA and pimelic acid into pimeloyl-CoA;Dbxref=Genbank:YP_001531364.1,GeneID:5711592;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531364.1;transl_table=11
NC_009952.1	RefSeq	gene	15472	17727	.	+	.	ID=gene12;Name=rnr;Dbxref=GeneID:5711593;gbkey=Gene;gene=rnr;locus_tag=Dshi_0015
NC_009952.1	RefSeq	CDS	15472	17727	.	+	0	ID=cds12;Name=YP_001531365.1;Parent=gene12;Note=KEGG: sit:TM1040_2994 ribonuclease R TIGRFAM: VacB and RNase II family 3-5 exoribonuclease%3B ribonuclease R PFAM: ribonuclease II%3B RNA binding S1 domain protein%2C high sw hit to Ribonuclease R %28RNase R%29 %28VacB protein homolog%29 from Haemophilus influenzae;Dbxref=Genbank:YP_001531365.1,GeneID:5711593;gbkey=CDS;gene=rnr;product=ribonuclease R;protein_id=YP_001531365.1;transl_table=11
NC_009952.1	RefSeq	gene	18179	19426	.	+	.	ID=gene13;Name=mltB2;Dbxref=GeneID:5711594;gbkey=Gene;gene=mltB2;locus_tag=Dshi_0016
NC_009952.1	RefSeq	CDS	18179	19426	.	+	0	ID=cds13;Name=YP_001531366.1;Parent=gene13;Note=TIGRFAM: lytic murein transglycosylase PFAM: Peptidoglycan-binding domain 1 protein KEGG: rde:RD1_0181 transglycosylase%2C putative%2C good sw hit to Membrane-bound lytic murein transglycosylase B precursor from E. coli;Dbxref=Genbank:YP_001531366.1,GeneID:5711594;gbkey=CDS;gene=mltB2;product=lytic murein transglycosylase;protein_id=YP_001531366.1;transl_table=11
NC_009952.1	RefSeq	gene	19516	20166	.	-	.	ID=gene14;Name=Dshi_0017;Dbxref=GeneID:5711595;gbkey=Gene;locus_tag=Dshi_0017
NC_009952.1	RefSeq	CDS	19516	20166	.	-	0	ID=cds14;Name=YP_001531367.1;Parent=gene14;Note=KEGG: jan:Jann_0593 hypothetical protein%2C one single bad swissprot hit to ATP synthase protein 8 %28ATPase subunit 8%29 from mitochondrion Artemia franciscana%2C short signalpeptide and transmembrane domains%2C uDENN Domain: found in a variety of signalling proteins%2C is a good candidate for a GTP%2FGDP exchange activity;Dbxref=Genbank:YP_001531367.1,GeneID:5711595;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531367.1;transl_table=11
NC_009952.1	RefSeq	gene	20326	22629	.	-	.	ID=gene15;Name=Dshi_0018;Dbxref=GeneID:5711596;gbkey=Gene;locus_tag=Dshi_0018
NC_009952.1	RefSeq	CDS	20326	22629	.	-	0	ID=cds15;Name=YP_001531368.1;Parent=gene15;Note=PFAM: multicopper oxidase type 2 KEGG: hch:HCH_03584 putative multicopper oxidases%2C diverse cupredoxin and multicopper oxidase 1-3 domains%2C bad swissprot hit to Blue copper oxidase cueO precursor %28Copper efflux oxidase%29 from Escherichia coli O157:H7%2C Copper resistance protein A %28copA%29 from a plasmid in Pseudomonas syringae. This protein seems to be involved in the resistance of the microbial host to copper;Dbxref=Genbank:YP_001531368.1,GeneID:5711596;gbkey=CDS;product=multicopper oxidase;protein_id=YP_001531368.1;transl_table=11
NC_009952.1	RefSeq	gene	22866	24683	.	+	.	ID=gene16;Name=Dshi_0019;Dbxref=GeneID:5711597;gbkey=Gene;locus_tag=Dshi_0019
NC_009952.1	RefSeq	CDS	22866	24683	.	+	0	ID=cds16;Name=YP_001531369.1;Parent=gene16;Note=TIGRFAM: small GTP-binding protein%3B GTP-binding protein TypA PFAM: elongation factor G domain protein%3B protein synthesis factor GTP-binding%3B elongation factor Tu domain 2 protein KEGG: rde:RD1_2707 GTP-binding protein TypA%2C putative%2C high swissprot hit to GTP-binding protein TypA%2FBipA homolog from Helicobacter pylori%2C diverse translation and elongation factor domains;Dbxref=Genbank:YP_001531369.1,GeneID:5711597;gbkey=CDS;product=GTP-binding protein TypA;protein_id=YP_001531369.1;transl_table=11
NC_009952.1	RefSeq	gene	25297	26019	.	-	.	ID=gene17;Name=Dshi_0020;Dbxref=GeneID:5711598;gbkey=Gene;locus_tag=Dshi_0020
NC_009952.1	RefSeq	CDS	25297	26019	.	-	0	ID=cds17;Name=YP_001531370.1;Parent=gene17;Note=KEGG: sil:SPO3454 hypothetical protein%2C no significant swissprot hit%2C next good Ref YP hit to putative transcriptional regulator%2C CadC from Silicibacter sp. TM1040%2C three domains to trans_reg_C%2C Effector domain of response regulator%2C CadC%2C DNA-binding winged-HTH domains and OmpR%2C Response regulators consisting of a CheY-like receiver domain%3B CadC;Dbxref=Genbank:YP_001531370.1,GeneID:5711598;gbkey=CDS;product=putative transcriptional regulator;protein_id=YP_001531370.1;transl_table=11
NC_009952.1	RefSeq	gene	25973	26377	.	-	.	ID=gene18;Name=Dshi_0021;Dbxref=GeneID:5711643;gbkey=Gene;locus_tag=Dshi_0021
NC_009952.1	RefSeq	CDS	25973	26377	.	-	0	ID=cds18;Name=YP_001531371.1;Parent=gene18;Note=KEGG: rsp:RSP_6002 hypothetical protein%2C one single transmembrane domain;Dbxref=Genbank:YP_001531371.1,GeneID:5711643;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531371.1;transl_table=11
NC_009952.1	RefSeq	gene	26400	26954	.	+	.	ID=gene19;Name=Dshi_0022;Dbxref=GeneID:5711644;gbkey=Gene;locus_tag=Dshi_0022
NC_009952.1	RefSeq	CDS	26400	26954	.	+	0	ID=cds19;Name=YP_001531372.1;Parent=gene19;Note=no swissprot hit%2C next ref ZP hit to hypothetical protein RB2150_13021 from Rhodobacterales bacterium HTCC2150%2C short signalpeptide and two transmembrane regions%2C NO hit to Sodium%2Fhydrogen exchanger family Pfam00999;Dbxref=Genbank:YP_001531372.1,GeneID:5711644;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531372.1;transl_table=11
NC_009952.1	RefSeq	gene	26998	27618	.	+	.	ID=gene20;Name=rnhB;Dbxref=GeneID:5711645;gbkey=Gene;gene=rnhB;locus_tag=Dshi_0023
NC_009952.1	RefSeq	CDS	26998	27618	.	+	0	ID=cds20;Name=YP_001531373.1;Parent=gene20;Note=RNH2%3B RNase HII%3B binds manganese%3B endonuclease which specifically degrades the RNA of RNA-DNA hybrids;Dbxref=Genbank:YP_001531373.1,GeneID:5711645;gbkey=CDS;gene=rnhB;product=ribonuclease HII;protein_id=YP_001531373.1;transl_table=11
NC_009952.1	RefSeq	gene	27713	28819	.	+	.	ID=gene21;Name=dam;Dbxref=GeneID:5711646;gbkey=Gene;gene=dam;locus_tag=Dshi_0024
NC_009952.1	RefSeq	CDS	27713	28819	.	+	0	ID=cds21;Name=YP_001531374.1;Parent=gene21;Note=PFAM: DNA methylase N-4%2FN-6 domain protein KEGG: rsq:Rsph17025_0066 DNA methylase N-4%2FN-6 domain protein%2C high swissprot hit to Modification methylase CcrMI %28Adenine-specific methyltransferase CcrMI from Caulobacter vibrioides %28Caulobacter crescentus%29;Dbxref=Genbank:YP_001531374.1,GeneID:5711646;gbkey=CDS;gene=dam;product=adenine-specific methyltransferase;protein_id=YP_001531374.1;transl_table=11
NC_009952.1	RefSeq	gene	29143	29814	.	+	.	ID=gene22;Name=chrR2;Dbxref=GeneID:5711647;gbkey=Gene;gene=chrR2;locus_tag=Dshi_0025
NC_009952.1	RefSeq	CDS	29143	29814	.	+	0	ID=cds22;Name=YP_001531375.1;Parent=gene22;Note=KEGG: abo:ABO_0664 hypothetical protein%2C Cupin%2C RmlC-type domain%2C best swissprot hit to Transcriptional activator chrR from Rhodobacter sphaeroides 2.4.1 and high similarity to Predicted transcription negative regulator %28refZP hit%29 from Roseovarius sp. 217;Dbxref=Genbank:YP_001531375.1,GeneID:5711647;gbkey=CDS;gene=chrR2;product=transcriptional activator anti-ECFsigma factor;protein_id=YP_001531375.1;transl_table=11
NC_009952.1	RefSeq	gene	29888	30529	.	+	.	ID=gene23;Name=Dshi_0026;Dbxref=GeneID:5711648;gbkey=Gene;locus_tag=Dshi_0026
NC_009952.1	RefSeq	CDS	29888	30529	.	+	0	ID=cds23;Name=YP_001531376.1;Parent=gene23;Note=KEGG: jan:Jann_0393 NAD-dependent epimerase%2Fdehydratase%2C best swissprot hit to Flavin reductase %28FR%29 %28NADPH-dependent diaphorase%29 from Mus musculus;Dbxref=Genbank:YP_001531376.1,GeneID:5711648;gbkey=CDS;product=NAD-dependent epimerase%2Fdehydratase;protein_id=YP_001531376.1;transl_table=11
NC_009952.1	RefSeq	gene	30653	31807	.	-	.	ID=gene24;Name=alkB1;Dbxref=GeneID:5711649;gbkey=Gene;gene=alkB1;locus_tag=Dshi_0027
NC_009952.1	RefSeq	CDS	30653	31807	.	-	0	ID=cds24;Name=YP_001531377.1;Parent=gene24;Note=PFAM: fatty acid desaturase KEGG: sit:TM1040_2646 alkane-1 monooxygenase%2C good swissprot hit to Alkane 1-monooxygenase %28Alkane omega-hydroxylase%29 from Pseudomonas oleovorans%2C also fatty acid desaturase typ 1 domain Pfam00487;Dbxref=Genbank:YP_001531377.1,GeneID:5711649;gbkey=CDS;gene=alkB1;product=alkane 1-monooxygenase;protein_id=YP_001531377.1;transl_table=11
NC_009952.1	RefSeq	gene	31815	32909	.	-	.	ID=gene25;Name=mutY;Dbxref=GeneID:5711650;gbkey=Gene;gene=mutY;locus_tag=Dshi_0028
NC_009952.1	RefSeq	CDS	31815	32909	.	-	0	ID=cds25;Name=YP_001531378.1;Parent=gene25;Note=TIGRFAM: A%2FG-specific adenine glycosylase PFAM: helix-hairpin-helix motif%3B HhH-GPD family protein KEGG: sit:TM1040_2645 A%2FG-specific adenine glycosylase%2C swissprot to A%2FG-specific adenine glycosylase from Escherichia coli;Dbxref=Genbank:YP_001531378.1,GeneID:5711650;gbkey=CDS;gene=mutY;product=A%2FG-specific adenine glycosylase;protein_id=YP_001531378.1;transl_table=11
NC_009952.1	RefSeq	gene	32995	33507	.	+	.	ID=gene26;Name=Dshi_0029;Dbxref=GeneID:5711651;gbkey=Gene;locus_tag=Dshi_0029
NC_009952.1	RefSeq	CDS	32995	33507	.	+	0	ID=cds26;Name=YP_001531379.1;Parent=gene26;Note=PFAM: protein of unknown function DUF1159 KEGG: sit:TM1040_2644 protein of unknown function DUF1159;Dbxref=Genbank:YP_001531379.1,GeneID:5711651;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531379.1;transl_table=11
NC_009952.1	RefSeq	gene	33519	34190	.	+	.	ID=gene27;Name=dsbA1;Dbxref=GeneID:5711652;gbkey=Gene;gene=dsbA1;locus_tag=Dshi_0030
NC_009952.1	RefSeq	CDS	33519	34190	.	+	0	ID=cds27;Name=YP_001531380.1;Parent=gene27;Note=KEGG: rde:RD1_0295 thiol-disulfide oxidoreductase D%2C putative%2C swissprot hit to Putative protein-disulfide oxidoreductase RBE_1288 precursor from Rickettsia bellii RML369-C%2C conserved domains: dsbA: a monomeric thiol disulfide oxidoreductase protein and dsbG: Protein-disulfide isomerase;Dbxref=Genbank:YP_001531380.1,GeneID:5711652;gbkey=CDS;gene=dsbA1;product=putative thiol-disulfide oxidoreductase D;protein_id=YP_001531380.1;transl_table=11
NC_009952.1	RefSeq	gene	34226	35239	.	-	.	ID=gene28;Name=lpxK;Dbxref=GeneID:5711653;gbkey=Gene;gene=lpxK;locus_tag=Dshi_0031
NC_009952.1	RefSeq	CDS	34226	35239	.	-	0	ID=cds28;Name=YP_001531381.1;Parent=gene28;Note=transfers the gamma-phosphate of ATP to the 4%27 position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1%2C4%27-bis-phosphate;Dbxref=Genbank:YP_001531381.1,GeneID:5711653;gbkey=CDS;gene=lpxK;product=tetraacyldisaccharide 4%27-kinase;protein_id=YP_001531381.1;transl_table=11
NC_009952.1	RefSeq	gene	35239	36555	.	-	.	ID=gene29;Name=kdtA;Dbxref=GeneID:5711654;gbkey=Gene;gene=kdtA;locus_tag=Dshi_0032
NC_009952.1	RefSeq	CDS	35239	36555	.	-	0	ID=cds29;Name=YP_001531382.1;Parent=gene29;Note=PFAM: Three-deoxy-D-manno-octulosonic-acid transferase domain protein KEGG: jan:Jann_0400 three-deoxy-D-manno-octulosonic-acid transferase-like;Dbxref=Genbank:YP_001531382.1,GeneID:5711654;gbkey=CDS;gene=kdtA;product=three-deoxy-D-manno-octulosonic-acid transferase domain-containing protein;protein_id=YP_001531382.1;transl_table=11
NC_009952.1	RefSeq	gene	36716	36907	.	-	.	ID=gene30;Name=Dshi_0033;Dbxref=GeneID:5711655;gbkey=Gene;locus_tag=Dshi_0033
NC_009952.1	RefSeq	CDS	36716	36907	.	-	0	ID=cds30;Name=YP_001531383.1;Parent=gene30;Note=PFAM: protein of unknown function DUF343 KEGG: sit:TM1040_0056 protein of unknown function DUF343%2C DUF343 domain: Trm112p-like protein%2C The function of this family is uncertain. The bacterial members are about 60-70 amino acids in length. The C terminus contains the strongest conservation. Trm112p is required for tRNA methylation n S. cerevisiae and is found in complexes with 2 tRNA methylases %28TRM9 and TRM11%29 also with putative methyltransferase YDR140W.;Dbxref=Genbank:YP_001531383.1,GeneID:5711655;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531383.1;transl_table=11
NC_009952.1	RefSeq	gene	36904	37551	.	-	.	ID=gene31;Name=Dshi_0034;Dbxref=GeneID:5711656;gbkey=Gene;locus_tag=Dshi_0034
NC_009952.1	RefSeq	CDS	36904	37551	.	-	0	ID=cds31;Name=YP_001531384.1;Parent=gene31;Note=PFAM: peptidase S16 lon domain protein KEGG: rsq:Rsph17025_2895 peptidase S16%2C lon domain protein%2C swissprot hit to ATP-dependent protease La 2 from Myxococcus xanthus%2C COG2802: Uncharacterized protein%2C similar to the N-terminal domain of Lon protease and LON-domains;Dbxref=Genbank:YP_001531384.1,GeneID:5711656;gbkey=CDS;product=ATP-dependent protease La;protein_id=YP_001531384.1;transl_table=11
NC_009952.1	RefSeq	gene	37578	38489	.	-	.	ID=gene32;Name=trxA2;Dbxref=GeneID:5711657;gbkey=Gene;gene=trxA2;locus_tag=Dshi_0035
NC_009952.1	RefSeq	CDS	37578	38489	.	-	0	ID=cds32;Name=YP_001531385.1;Parent=gene32;Note=PFAM: Thioredoxin domain KEGG: rsp:RSP_1489 protein containing thioredoxin domain%2C swissprot hit to Thioredoxin %28TRX%29 from Pasteurella multocida;Dbxref=Genbank:YP_001531385.1,GeneID:5711657;gbkey=CDS;gene=trxA2;product=thioredoxin domain-containing protein;protein_id=YP_001531385.1;transl_table=11
NC_009952.1	RefSeq	gene	38563	39351	.	-	.	ID=gene33;Name=xthA;Dbxref=GeneID:5711658;gbkey=Gene;gene=xthA;locus_tag=Dshi_0036
NC_009952.1	RefSeq	CDS	38563	39351	.	-	0	ID=cds33;Name=YP_001531386.1;Parent=gene33;Note=TIGRFAM: exodeoxyribonuclease III Xth PFAM: Endonuclease%2Fexonuclease%2Fphosphatase KEGG: sit:TM1040_0053 exodeoxyribonuclease III%2C best swissprot hit to Exodeoxyribonuclease III %28Exonuclease III%29 from Escherichia coli;Dbxref=Genbank:YP_001531386.1,GeneID:5711658;gbkey=CDS;gene=xthA;product=exodeoxyribonuclease III;protein_id=YP_001531386.1;transl_table=11
NC_009952.1	RefSeq	gene	39692	40216	.	+	.	ID=gene34;Name=Dshi_0037;Dbxref=GeneID:5711659;gbkey=Gene;locus_tag=Dshi_0037
NC_009952.1	RefSeq	CDS	39692	40216	.	+	0	ID=cds34;Name=YP_001531387.1;Parent=gene34;Note=unsure%2C bad GC frame plot%2C no significant Ref hits%3B some kind of LPxTG anchor domains detected by TIGRfam%2C but unconvincing%3B some leucine repeats at C-terminal;Dbxref=Genbank:YP_001531387.1,GeneID:5711659;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531387.1;transl_table=11
NC_009952.1	RefSeq	gene	40432	41118	.	-	.	ID=gene35;Name=Dshi_0038;Dbxref=GeneID:5711660;gbkey=Gene;locus_tag=Dshi_0038
NC_009952.1	RefSeq	CDS	40432	41118	.	-	0	ID=cds35;Name=YP_001531388.1;Parent=gene35;Note=PFAM: response regulator receiver%3B transcriptional regulator domain protein KEGG: jan:Jann_0417 two component transcriptional regulator%2C winged helix family%2C Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain%2C best swissprot hit to Transcriptional regulatory protein yycF from Bacillus subtilis%3B winged helix family;Dbxref=Genbank:YP_001531388.1,GeneID:5711660;gbkey=CDS;product=two component transcriptional regulator;protein_id=YP_001531388.1;transl_table=11
NC_009952.1	RefSeq	gene	41277	42347	.	+	.	ID=gene36;Name=ribA;Dbxref=GeneID:5711661;gbkey=Gene;gene=ribA;locus_tag=Dshi_0039
NC_009952.1	RefSeq	CDS	41277	42347	.	+	0	ID=cds36;Name=YP_001531389.1;Parent=gene36;Note=PFAM: GTP cyclohydrolase II KEGG: sil:SPO3427 3%2C4-dihydroxy-2-butanone 4-phosphate synthase%2FGTP cyclohydrolase II;Dbxref=Genbank:YP_001531389.1,GeneID:5711661;gbkey=CDS;gene=ribA;product=GTP cyclohydrolase II;protein_id=YP_001531389.1;transl_table=11
NC_009952.1	RefSeq	gene	42375	42662	.	+	.	ID=gene37;Name=Dshi_0040;Dbxref=GeneID:5711662;gbkey=Gene;locus_tag=Dshi_0040
NC_009952.1	RefSeq	CDS	42375	42662	.	+	0	ID=cds37;Name=YP_001531390.1;Parent=gene37;Note=PFAM: protein of unknown function DUF1330 KEGG: sit:TM1040_1707 protein of unknown function DUF1330%2C no significant swissprot hit%2C best ref ZP hit to hypothetical protein OM2255_07195 from alpha proteobacterium HTCC2255;Dbxref=Genbank:YP_001531390.1,GeneID:5711662;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531390.1;transl_table=11
NC_009952.1	RefSeq	gene	42669	43163	.	+	.	ID=gene38;Name=Dshi_0041;Dbxref=GeneID:5711663;gbkey=Gene;locus_tag=Dshi_0041
NC_009952.1	RefSeq	CDS	42669	43163	.	+	0	ID=cds38;Name=YP_001531391.1;Parent=gene38;Note=KEGG: rde:RD1_0044 hypothetical protein%2C no significant swissprot hit%2C conserved domain found in several roseobacter function unknown;Dbxref=Genbank:YP_001531391.1,GeneID:5711663;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531391.1;transl_table=11
NC_009952.1	RefSeq	gene	43160	43816	.	-	.	ID=gene39;Name=Dshi_0042;Dbxref=GeneID:5711664;gbkey=Gene;locus_tag=Dshi_0042
NC_009952.1	RefSeq	CDS	43160	43816	.	-	0	ID=cds39;Name=YP_001531392.1;Parent=gene39;Note=PFAM: alanine racemase domain protein KEGG: jan:Jann_0414 protein of unknown function UPF0001%2C swissprot hit to UPF0001 protein yggS from E. coli O6 related to PLP dependent enzymes class III;Dbxref=Genbank:YP_001531392.1,GeneID:5711664;gbkey=CDS;product=alanine racemase domain-containing protein;protein_id=YP_001531392.1;transl_table=11
NC_009952.1	RefSeq	gene	43903	44862	.	-	.	ID=gene40;Name=Dshi_0043;Dbxref=GeneID:5711665;gbkey=Gene;locus_tag=Dshi_0043
NC_009952.1	RefSeq	CDS	43903	44862	.	-	0	ID=cds40;Name=YP_001531393.1;Parent=gene40;Note=swissprot hit to porin from Rhodobacter capsulatus and high ref ZP hit to putative porin from D. shibae DshiDRAFT_2133 which doesnt exist in the finished sequence and to outer membrane porin%2C putative from Roseobacter sp. CCS2%2C also conserved domain to porin%2C Gram-negative type %28interPro%29%3B Gram-negative type;Dbxref=Genbank:YP_001531393.1,GeneID:5711665;gbkey=CDS;product=porin;protein_id=YP_001531393.1;transl_table=11
NC_009952.1	RefSeq	gene	45163	45633	.	+	.	ID=gene41;Name=Dshi_0044;Dbxref=GeneID:5711666;gbkey=Gene;locus_tag=Dshi_0044
NC_009952.1	RefSeq	CDS	45163	45633	.	+	0	ID=cds41;Name=YP_001531394.1;Parent=gene41;Note=KEGG: rsq:Rsph17025_3134 hypothetical protein;Dbxref=Genbank:YP_001531394.1,GeneID:5711666;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531394.1;transl_table=11
NC_009952.1	RefSeq	gene	45640	46014	.	-	.	ID=gene42;Name=Dshi_0045;Dbxref=GeneID:5711667;gbkey=Gene;locus_tag=Dshi_0045
NC_009952.1	RefSeq	CDS	45640	46014	.	-	0	ID=cds42;Name=YP_001531395.1;Parent=gene42;Note=bad BLAST hits to hypothetical proteins%2C no significant swissprot hit%2C no domains detected by TIGRfam %28no UspA domain%29;Dbxref=Genbank:YP_001531395.1,GeneID:5711667;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531395.1;transl_table=11
NC_009952.1	RefSeq	gene	46315	46704	.	+	.	ID=gene43;Name=Dshi_0046;Dbxref=GeneID:5711668;gbkey=Gene;locus_tag=Dshi_0046
NC_009952.1	RefSeq	CDS	46315	46704	.	+	0	ID=cds43;Name=YP_001531396.1;Parent=gene43;Note=no Interpro hits reported%2C unsure%2C bad GC frame plot%2C bad ref ZP hits to hypothetical protein ROS217_08770 from Roseovarius sp. 217;Dbxref=Genbank:YP_001531396.1,GeneID:5711668;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531396.1;transl_table=11
NC_009952.1	RefSeq	gene	46984	47406	.	-	.	ID=gene44;Name=Dshi_0047;Dbxref=GeneID:5711669;gbkey=Gene;locus_tag=Dshi_0047
NC_009952.1	RefSeq	CDS	46984	47406	.	-	0	ID=cds44;Name=YP_001531397.1;Parent=gene44;Note=no Interpro hits reported%2C unsure%2C bad GC frame plot%2C bad ref XP hits to hypothetical protein MGG_12456 from Magnaporthe grisea 70-15 %28Fungi%29;Dbxref=Genbank:YP_001531397.1,GeneID:5711669;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531397.1;transl_table=11
NC_009952.1	RefSeq	gene	47483	48445	.	-	.	ID=gene45;Name=Dshi_0048;Dbxref=GeneID:5711670;gbkey=Gene;locus_tag=Dshi_0048
NC_009952.1	RefSeq	CDS	47483	48445	.	-	0	ID=cds45;Name=YP_001531398.1;Parent=gene45;Note=KEGG: rpc:RPC_0725 putative transposase%2C good ref ZP hit to possible transposase from Roseovarius sp. 217%2C InterPro:several Zinc finger domains %28DNA binding%3F%29;Dbxref=Genbank:YP_001531398.1,GeneID:5711670;gbkey=CDS;product=putative transposase;protein_id=YP_001531398.1;transl_table=11
NC_009952.1	RefSeq	gene	48547	48753	.	+	.	ID=gene46;Name=Dshi_0049;Dbxref=GeneID:5711671;gbkey=Gene;locus_tag=Dshi_0049
NC_009952.1	RefSeq	CDS	48547	48753	.	+	0	ID=cds46;Name=YP_001531399.1;Parent=gene46;Note=KEGG: har:HEAR2212 hypothetical protein%2C no InterPro hit%2C no good swissprot hit%2C Ref ZP hit to hypothetical protein ROS217_08790 fromRoseovarius sp. 217%2C next Ref ZP hit to GMP synthase%2C PP-ATPase domain%2Fsubunit from Magnetospirillum magnetotacticum MS-1;Dbxref=Genbank:YP_001531399.1,GeneID:5711671;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531399.1;transl_table=11
NC_009952.1	RefSeq	gene	48750	49232	.	-	.	ID=gene47;Name=Dshi_0050;Dbxref=GeneID:5711672;gbkey=Gene;locus_tag=Dshi_0050
NC_009952.1	RefSeq	CDS	48750	49232	.	-	0	ID=cds47;Name=YP_001531400.1;Parent=gene47;Note=PFAM: protein of unknown function DUF955 KEGG: mag:amb3753 predicted Zn peptidase%2C no significant swissprot hit%2C good ref Yp hit to Predicted Zn peptidase from Magnetospirillum magneticum AMB-1%2C DUF955 domain shows similarity to Peptidase_M48;Dbxref=Genbank:YP_001531400.1,GeneID:5711672;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531400.1;transl_table=11
NC_009952.1	RefSeq	gene	49229	49645	.	-	.	ID=gene48;Name=Dshi_0051;Dbxref=GeneID:5711673;gbkey=Gene;locus_tag=Dshi_0051
NC_009952.1	RefSeq	CDS	49229	49645	.	-	0	ID=cds48;Name=YP_001531401.1;Parent=gene48;Note=no significant BLAST hits%2C short signal peptide and two transmembrane regions%2C bad GC frame plot;Dbxref=Genbank:YP_001531401.1,GeneID:5711673;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531401.1;transl_table=11
NC_009952.1	RefSeq	gene	49656	49868	.	-	.	ID=gene49;Name=Dshi_0052;Dbxref=GeneID:5711674;gbkey=Gene;locus_tag=Dshi_0052
NC_009952.1	RefSeq	CDS	49656	49868	.	-	0	ID=cds49;Name=YP_001531402.1;Parent=gene49;Note=no hits reported for InterPro Scan%2C BLAST hits similar to several hypothetical proteins in Roseobacter strains%2C bad GC frame plot;Dbxref=Genbank:YP_001531402.1,GeneID:5711674;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531402.1;transl_table=11
NC_009952.1	RefSeq	gene	49943	51163	.	+	.	ID=gene50;Name=Dshi_0053;Dbxref=GeneID:5711675;gbkey=Gene;locus_tag=Dshi_0053
NC_009952.1	RefSeq	CDS	49943	51163	.	+	0	ID=cds50;Name=YP_001531403.1;Parent=gene50;Note=PFAM: HI0933 family protein%3B FAD-dependent pyridine nucleotide-disulphide oxidoreductase KEGG: sil:SPO3436 hypothetical protein%2C best ref ZP hit to hypothetical protein ISM_02290 from Roseovarius nubinhibens ISM: related to COG2081 Predicted flavoproteins%2C HI0933 like domain: This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif %28Rossman fold%29%2C including oxidoreductases and dehydrogenases;Dbxref=Genbank:YP_001531403.1,GeneID:5711675;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531403.1;transl_table=11
NC_009952.1	RefSeq	gene	51142	51732	.	-	.	ID=gene51;Name=gst2;Dbxref=GeneID:5711676;gbkey=Gene;gene=gst2;locus_tag=Dshi_0054
NC_009952.1	RefSeq	CDS	51142	51732	.	-	0	ID=cds51;Name=YP_001531404.1;Parent=gene51;Note=PFAM: Glutathione S-transferase domain KEGG: pde:Pden_2769 glutathione S-transferase%2C N-terminal domain and C-terminal domain%3B Thioredoxin fold;Dbxref=Genbank:YP_001531404.1,GeneID:5711676;gbkey=CDS;gene=gst2;product=glutathione S-transferase-like protein;protein_id=YP_001531404.1;transl_table=11
NC_009952.1	RefSeq	gene	51747	52772	.	-	.	ID=gene52;Name=holA;Dbxref=GeneID:5711677;gbkey=Gene;gene=holA;locus_tag=Dshi_0055
NC_009952.1	RefSeq	CDS	51747	52772	.	-	0	ID=cds52;Name=YP_001531405.1;Parent=gene52;Note=KEGG: sit:TM1040_0043 DNA polymerase III%2C delta subunit;Dbxref=Genbank:YP_001531405.1,GeneID:5711677;gbkey=CDS;gene=holA;product=DNA polymerase III subunit delta;protein_id=YP_001531405.1;transl_table=11
NC_009952.1	RefSeq	gene	52769	53263	.	-	.	ID=gene53;Name=holA;Dbxref=GeneID:5711678;gbkey=Gene;gene=holA;locus_tag=Dshi_0056
NC_009952.1	RefSeq	CDS	52769	53263	.	-	0	ID=cds53;Name=YP_001531406.1;Parent=gene53;Note=KEGG: rsq:Rsph17025_3136 hypothetical protein%2C best ref ZP hit to lipoprotein%2C putative from Sulfitobacter sp. NAS-14.1%2C no significant InterPro Scan hits;Dbxref=Genbank:YP_001531406.1,GeneID:5711678;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531406.1;transl_table=11
NC_009952.1	RefSeq	gene	53250	55859	.	-	.	ID=gene54;Name=leuS;Dbxref=GeneID:5711679;gbkey=Gene;gene=leuS;locus_tag=Dshi_0057
NC_009952.1	RefSeq	CDS	53250	55859	.	-	0	ID=cds54;Name=YP_001531407.1;Parent=gene54;Note=leucine--tRNA ligase%3B LeuRS%3B class-I aminoacyl-tRNA synthetase%3B charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA%3B due to the large number of codons that tRNA%28Leu%29 recognizes%2C the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA%2C but instead recognition is dependent on a conserved discriminator base A37 and a long arm%3B an editing domain hydrolyzes misformed products%3B in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase;Dbxref=Genbank:YP_001531407.1,GeneID:5711679;gbkey=CDS;gene=leuS;product=leucyl-tRNA synthetase;protein_id=YP_001531407.1;transl_table=11
NC_009952.1	RefSeq	gene	55941	56645	.	-	.	ID=gene55;Name=lolA;Dbxref=GeneID:5711680;gbkey=Gene;gene=lolA;locus_tag=Dshi_0058
NC_009952.1	RefSeq	CDS	55941	56645	.	-	0	ID=cds55;Name=YP_001531408.1;Parent=gene55;Note=PFAM: outer membrane lipoprotein carrier protein LolA KEGG: rsq:Rsph17025_2901 outer membrane lipoprotein carrier protein LolA;Dbxref=Genbank:YP_001531408.1,GeneID:5711680;gbkey=CDS;gene=lolA;product=outer membrane lipoprotein carrier protein;protein_id=YP_001531408.1;transl_table=11
NC_009952.1	RefSeq	gene	56686	59673	.	-	.	ID=gene56;Name=ftsK;Dbxref=GeneID:5711681;gbkey=Gene;gene=ftsK;locus_tag=Dshi_0059
NC_009952.1	RefSeq	CDS	56686	59673	.	-	0	ID=cds56;Name=YP_001531409.1;Parent=gene56;Note=PFAM: cell divisionFtsK%2FSpoIIIE KEGG: rde:RD1_0033 cell division protein FtsK%3B very good swissprot hit to DNA translocase ftsK from Agrobacterium tumefaciens str. C58;Dbxref=Genbank:YP_001531409.1,GeneID:5711681;gbkey=CDS;gene=ftsK;product=DNA translocase;protein_id=YP_001531409.1;transl_table=11
NC_009952.1	RefSeq	gene	59687	60868	.	-	.	ID=gene57;Name=Dshi_0060;Dbxref=GeneID:5711682;gbkey=Gene;locus_tag=Dshi_0060
NC_009952.1	RefSeq	CDS	59687	60868	.	-	0	ID=cds57;Name=YP_001531410.1;Parent=gene57;Note=PFAM: aminotransferase class I and II KEGG: sil:SPO3417 aminotransferase%2C classes I and II%3B swissprot hit to Putative aminotransferase aatC from Sinorhizobium meliloti;Dbxref=Genbank:YP_001531410.1,GeneID:5711682;gbkey=CDS;product=class I%2FII aminotransferase;protein_id=YP_001531410.1;transl_table=11
NC_009952.1	RefSeq	gene	60992	62323	.	-	.	ID=gene58;Name=Dshi_0061;Dbxref=GeneID:5711683;gbkey=Gene;locus_tag=Dshi_0061
NC_009952.1	RefSeq	CDS	60992	62323	.	-	0	ID=cds58;Name=YP_001531411.1;Parent=gene58;Note=PFAM: Amidase KEGG: rsq:Rsph17025_2898 amidase%3B COG0154 Asp-tRNAAsn%2FGlu-tRNAGln amidotransferase A subunit and related amidases%3B best swissprot hit to Glutamyl-tRNA%28Gln%29 amidotransferase subunit A from Dehalococcoides ethenogenes 195 : function: Furnishes a means for formation of correctly charged Gln-tRNA%28Gln%29 through the transamidation of misacylated Glu-tRNA%28Gln%29 in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA%28Gln%29 %28By similarity%29.;Dbxref=Genbank:YP_001531411.1,GeneID:5711683;gbkey=CDS;product=amidase;protein_id=YP_001531411.1;transl_table=11
NC_009952.1	RefSeq	gene	62385	63650	.	+	.	ID=gene59;Name=ubiH;Dbxref=GeneID:5711684;gbkey=Gene;gene=ubiH;locus_tag=Dshi_0062
NC_009952.1	RefSeq	CDS	62385	63650	.	+	0	ID=cds59;Name=YP_001531412.1;Parent=gene59;Note=TIGRFAM: Ubiquinone biosynthesis hydroxylase%2C UbiH%2FUbiF%2FVisC%2FCOQ6 family PFAM: monooxygenase FAD-binding KEGG: sil:SPO3419 ubiquinone biosynthesis hydroxylase%2C UbiH%2FUbiF%2FVisC%2FCOQ6 family%3B 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases COG0654%3B best swissprot hit to 2-octaprenyl-6-methoxyphenol hydroxylase from Escherichia coli K12;Dbxref=Genbank:YP_001531412.1,GeneID:5711684;gbkey=CDS;gene=ubiH;product=2-octaprenyl-6-methoxyphenol hydroxylase;protein_id=YP_001531412.1;transl_table=11
NC_009952.1	RefSeq	gene	63773	64567	.	-	.	ID=gene60;Name=suhB2;Dbxref=GeneID:5711685;gbkey=Gene;gene=suhB2;locus_tag=Dshi_0063
NC_009952.1	RefSeq	CDS	63773	64567	.	-	0	ID=cds60;Name=YP_001531413.1;Parent=gene60;Note=PFAM: inositol monophosphatase KEGG: sil:SPO3443 inositol monophosphatase family protein%3B COG0483 Archaeal fructose-1%2C6-bisphosphatase and related enzymes of inositol monophosphatase family%3B best BLAST hits to inositol monophosphatase family protein from Oceanicola batsensis HTCC2597 %28refZP%29 and Inositol-1-monophosphatase %28IMPase%29 from Sinorhizobium meliloti %28Rhizobium meliloti%29 %28swissprot%29;Dbxref=Genbank:YP_001531413.1,GeneID:5711685;gbkey=CDS;gene=suhB2;product=inositol-phosphate phosphatase;protein_id=YP_001531413.1;transl_table=11
NC_009952.1	RefSeq	gene	64554	65900	.	-	.	ID=gene61;Name=pmbA;Dbxref=GeneID:5711686;gbkey=Gene;gene=pmbA;locus_tag=Dshi_0064
NC_009952.1	RefSeq	CDS	64554	65900	.	-	0	ID=cds61;Name=YP_001531414.1;Parent=gene61;Note=PFAM: peptidase U62 modulator of DNA gyrase KEGG: sit:TM1040_2639 peptidase U62%2C modulator of DNA gyrase%3B COG0312 Predicted Zn-dependent proteases and their inactivated homologs%3B good swissprot hit to Protein pmbA %28Protein tldE%29 from Escherichia coli K12;Dbxref=Genbank:YP_001531414.1,GeneID:5711686;gbkey=CDS;gene=pmbA;product=peptidase U62 modulator of DNA gyrase;protein_id=YP_001531414.1;transl_table=11
NC_009952.1	RefSeq	gene	65978	67468	.	-	.	ID=gene62;Name=Dshi_0065;Dbxref=GeneID:5711687;gbkey=Gene;locus_tag=Dshi_0065
NC_009952.1	RefSeq	CDS	65978	67468	.	-	0	ID=cds62;Name=YP_001531415.1;Parent=gene62;Note=KEGG: sil:SPO3441 hypothetical protein%2C no swissprot hit%2C ref hits to several hypothetical proteins in roseobacter strains;Dbxref=Genbank:YP_001531415.1,GeneID:5711687;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531415.1;transl_table=11
NC_009952.1	RefSeq	gene	67584	68342	.	+	.	ID=gene63;Name=Dshi_0066;Dbxref=GeneID:5711688;gbkey=Gene;locus_tag=Dshi_0066
NC_009952.1	RefSeq	CDS	67584	68342	.	+	0	ID=cds63;Name=YP_001531416.1;Parent=gene63;Note=PFAM: short-chain dehydrogenase%2Freductase SDR%3B KR domain protein KEGG: sil:SPO3440 20-beta-hydroxysteroid dehydrogenase%2C putative%2C BLAST hits to several dehydrogenase proteins: swissprot hit to Uncharacterized oxidoreductase SSP1627 from Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 %28Belongs to the short-chain dehydrogenases%2Freductases %28SDR%29 family and ref hits to 20-beta-hydroxysteroid dehydrogenase%2C putative from Silicibacter pomeroyi DSS-3;Dbxref=Genbank:YP_001531416.1,GeneID:5711688;gbkey=CDS;product=dehydrogenase%2Freductase;protein_id=YP_001531416.1;transl_table=11
NC_009952.1	RefSeq	gene	68339	69085	.	+	.	ID=gene64;Name=caiD;Dbxref=GeneID:5711689;gbkey=Gene;gene=caiD;locus_tag=Dshi_0067
NC_009952.1	RefSeq	CDS	68339	69085	.	+	0	ID=cds64;Name=YP_001531417.1;Parent=gene64;Note=PFAM: Enoyl-CoA hydratase%2Fisomerase KEGG: rsh:Rsph17029_2572 enoyl-CoA hydratase%2Fisomerase%3B COG1024 Enoyl-CoA hydratase%2Fcarnithine racemase;Dbxref=Genbank:YP_001531417.1,GeneID:5711689;gbkey=CDS;gene=caiD;product=enoyl-CoA hydratase%2Fisomerase;protein_id=YP_001531417.1;transl_table=11
NC_009952.1	RefSeq	gene	69090	69674	.	-	.	ID=gene65;Name=Dshi_0068;Dbxref=GeneID:5711690;gbkey=Gene;locus_tag=Dshi_0068
NC_009952.1	RefSeq	CDS	69090	69674	.	-	0	ID=cds65;Name=YP_001531418.1;Parent=gene65;Note=KEGG: sil:SPO3414 lipoprotein%2C putative%3B Lytic Transglycosylase %28LT%29 and Goose Egg White Lysozyme %28GEWL%29 domain. LTs catalyze the cleavage of the beta-1%2C4-glycosidic bond between N-acetylmuramic acid %28MurNAc%29 and N-acetyl-D-glucosamine %28GlcNAc%29%2C as do goose-type lysozymes. However%2C in addition to this%2C they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue.;Dbxref=Genbank:YP_001531418.1,GeneID:5711690;gbkey=CDS;product=lipoprotein;protein_id=YP_001531418.1;transl_table=11
NC_009952.1	RefSeq	gene	69751	70632	.	-	.	ID=gene66;Name=Dshi_0069;Dbxref=GeneID:5711691;gbkey=Gene;locus_tag=Dshi_0069
NC_009952.1	RefSeq	CDS	69751	70632	.	-	0	ID=cds66;Name=YP_001531419.1;Parent=gene66;Note=PFAM: Auxin Efflux Carrier%3B COG0679 Predicted permeases%2C good Ref ZP hit to auxin efflux carrier family protein fromSulfitobacter sp. EE-36%2C swissprot hit to Uncharacterized transporter MTH_1382 from Methanothermobacter thermautotrophicus str. Delta H;Dbxref=Genbank:YP_001531419.1,GeneID:5711691;gbkey=CDS;product=auxin efflux carrier;protein_id=YP_001531419.1;transl_table=11
NC_009952.1	RefSeq	gene	70719	71045	.	+	.	ID=gene67;Name=yccV;Dbxref=GeneID:5711692;gbkey=Gene;gene=yccV;locus_tag=Dshi_0070
NC_009952.1	RefSeq	CDS	70719	71045	.	+	0	ID=cds67;Name=YP_001531420.1;Parent=gene67;Note=TIGRFAM: hemimethylated DNA binding protein PFAM: Hemimethylated DNA-binding region KEGG: sil:SPO3412 hypothetical protein%2C no swissprot;Dbxref=Genbank:YP_001531420.1,GeneID:5711692;gbkey=CDS;gene=yccV;product=hemimethylated DNA-binding protein;protein_id=YP_001531420.1;transl_table=11
NC_009952.1	RefSeq	gene	71093	72676	.	-	.	ID=gene68;Name=ggt1;Dbxref=GeneID:5711693;gbkey=Gene;gene=ggt1;locus_tag=Dshi_0071
NC_009952.1	RefSeq	CDS	71093	72676	.	-	0	ID=cds68;Name=YP_001531421.1;Parent=gene68;Note=PFAM: gamma-glutamyltranspeptidase KEGG: sit:TM1040_0064 gamma-glutamyltransferase%2C good swissprot hit to Gamma-glutamyltranspeptidase precursor from Bacillus subtilis;Dbxref=Genbank:YP_001531421.1,GeneID:5711693;gbkey=CDS;gene=ggt1;product=gamma-glutamyltransferase;protein_id=YP_001531421.1;transl_table=11
NC_009952.1	RefSeq	gene	72738	73247	.	-	.	ID=gene69;Name=rsbW;Dbxref=GeneID:5711694;gbkey=Gene;gene=rsbW;locus_tag=Dshi_0072
NC_009952.1	RefSeq	CDS	72738	73247	.	-	0	ID=cds69;Name=YP_001531422.1;Parent=gene69;Note=KEGG: rde:RD1_0027 serine-protein kinase%2C putative%3B COG2172 Anti-sigma regulatory factor %28Ser%2FThr protein kinase%29%3B ATP-binding region is related to ATPase domains of histidine kinase%3B Anti-sigma-B factor;Dbxref=Genbank:YP_001531422.1,GeneID:5711694;gbkey=CDS;gene=rsbW;product=serine-protein kinase;protein_id=YP_001531422.1;transl_table=11
NC_009952.1	RefSeq	gene	73262	73594	.	-	.	ID=gene70;Name=Dshi_0073;Dbxref=GeneID:5711695;gbkey=Gene;locus_tag=Dshi_0073
NC_009952.1	RefSeq	CDS	73262	73594	.	-	0	ID=cds70;Name=YP_001531423.1;Parent=gene70;Note=TIGRFAM: anti-anti-sigma factor PFAM: Sulfate transporter%2Fantisigma-factor antagonist STAS KEGG: rsq:Rsph17025_2906 anti-sigma-factor antagonist%2C SpoIIAA domain: The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA %28%29. The four components regulate the sporulation sigma factor F. Early in sporulation%2C SpoIIAA is in the phosphorylated state %28SpoIIAA-P%29%2C as a result;Dbxref=Genbank:YP_001531423.1,GeneID:5711695;gbkey=CDS;product=anti-sigma-factor antagonist;protein_id=YP_001531423.1;transl_table=11
NC_009952.1	RefSeq	gene	73694	74872	.	+	.	ID=gene71;Name=thlA;Dbxref=GeneID:5711696;gbkey=Gene;gene=thlA;locus_tag=Dshi_0074
NC_009952.1	RefSeq	CDS	73694	74872	.	+	0	ID=cds71;Name=YP_001531424.1;Parent=gene71;Note=KEGG: jan:Jann_4050 acetyl-CoA C-acetyltransferase TIGRFAM: acetyl-CoA acetyltransferase PFAM: Thiolase%3B good swissprot hit to Acetyl-CoA acetyltransferase %28Acetoacetyl-CoA thiolase%29 from Clostridium acetobutylicum%3B found domain accords to thiolase II;Dbxref=Genbank:YP_001531424.1,GeneID:5711696;gbkey=CDS;gene=thlA;product=acetyl-CoA acetyltransferase;protein_id=YP_001531424.1;transl_table=11
NC_009952.1	RefSeq	gene	75136	75378	.	-	.	ID=gene72;Name=Dshi_0075;Dbxref=GeneID:5711697;gbkey=Gene;locus_tag=Dshi_0075
NC_009952.1	RefSeq	CDS	75136	75378	.	-	0	ID=cds72;Name=YP_001531425.1;Parent=gene72;Note=KEGG: rde:RD1_0777 hypothetical protein%3B bad BLAST hits%2C no swissprot: Calcium-binding EF-hand domain;Dbxref=Genbank:YP_001531425.1,GeneID:5711697;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531425.1;transl_table=11
NC_009952.1	RefSeq	gene	75771	76007	.	+	.	ID=gene73;Name=Dshi_0076;Dbxref=GeneID:5711698;gbkey=Gene;locus_tag=Dshi_0076
NC_009952.1	RefSeq	CDS	75771	76007	.	+	0	ID=cds73;Name=YP_001531426.1;Parent=gene73;Note=KEGG: rsq:Rsph17025_3561 IstB domain protein ATP-binding protein%3B no IPR domain%2C best Blast hit to Integrase%2C catalytic region from Rhodobacter sphaeroides ATCC 17025%3B bad GC frame plot;Dbxref=Genbank:YP_001531426.1,GeneID:5711698;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531426.1;transl_table=11
NC_009952.1	RefSeq	gene	76020	76910	.	+	.	ID=gene74;Name=Dshi_0077;Dbxref=GeneID:5711699;gbkey=Gene;locus_tag=Dshi_0077
NC_009952.1	RefSeq	CDS	76020	76910	.	+	0	ID=cds74;Name=YP_001531427.1;Parent=gene74;Note=no significant BLAST hits%2C unsure GC frame plot%2C IPR found small domain of intermediate filament from eukaryotes%2C integrated by Dshi_0076 possible integrase%3F;Dbxref=Genbank:YP_001531427.1,GeneID:5711699;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531427.1;transl_table=11
NC_009952.1	RefSeq	gene	76953	77537	.	+	.	ID=gene75;Name=Dshi_0078;Dbxref=GeneID:5711700;gbkey=Gene;locus_tag=Dshi_0078
NC_009952.1	RefSeq	CDS	76953	77537	.	+	0	ID=cds75;Name=YP_001531428.1;Parent=gene75;Note=no significant BLAST hits%2C unsure GC frame plot%2C no InterPro Scan hits detected%2C but good RBS binding site AGGAT;Dbxref=Genbank:YP_001531428.1,GeneID:5711700;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531428.1;transl_table=11
NC_009952.1	RefSeq	gene	77867	77943	.	-	.	ID=gene76;Name=Dshi_6001;Dbxref=GeneID:5711701;gbkey=Gene;locus_tag=Dshi_6001
NC_009952.1	RefSeq	tRNA	77867	77943	.	-	.	ID=rna0;Parent=gene76;Dbxref=GeneID:5711701;codons=23;gbkey=tRNA;product=tRNA-Pro
NC_009952.1	RefSeq	exon	77867	77943	.	-	.	ID=id1;Parent=rna0;Dbxref=GeneID:5711701;codons=23;gbkey=tRNA;product=tRNA-Pro
NC_009952.1	RefSeq	gene	78091	78972	.	+	.	ID=gene77;Name=Dshi_0079;Dbxref=GeneID:5711702;gbkey=Gene;locus_tag=Dshi_0079
NC_009952.1	RefSeq	CDS	78091	78972	.	+	0	ID=cds76;Name=YP_001531429.1;Parent=gene77;Note=PFAM: lipid A biosynthesis acyltransferase KEGG: sil:SPO1058 acyltransferase%2C HtrB family;Dbxref=Genbank:YP_001531429.1,GeneID:5711702;gbkey=CDS;product=lipid A biosynthesis acyltransferase;protein_id=YP_001531429.1;transl_table=11
NC_009952.1	RefSeq	gene	78969	79955	.	-	.	ID=gene78;Name=Dshi_0080;Dbxref=GeneID:5711703;gbkey=Gene;locus_tag=Dshi_0080
NC_009952.1	RefSeq	CDS	78969	79955	.	-	0	ID=cds77;Name=YP_001531430.1;Parent=gene78;Note=PFAM: protein of unknown function DUF6 transmembrane KEGG: jan:Jann_0131 protein of unknown function DUF6%2C transmembrane%3B good hits to putative transporter%2C RhaT family%2C DMT superfamily from Loktanella vestfoldensis SKA53%3B also middle-rate swissprot hit to S-adenosylmethionine uptake transporter from Rickettsia typhi;Dbxref=Genbank:YP_001531430.1,GeneID:5711703;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531430.1;transl_table=11
NC_009952.1	RefSeq	gene	80080	81186	.	-	.	ID=gene79;Name=imdh;Dbxref=GeneID:5711704;gbkey=Gene;gene=imdh;locus_tag=Dshi_0081
NC_009952.1	RefSeq	CDS	80080	81186	.	-	0	ID=cds78;Name=YP_001531431.1;Parent=gene79;Note=catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis;Dbxref=Genbank:YP_001531431.1,GeneID:5711704;gbkey=CDS;gene=imdh;product=3-isopropylmalate dehydrogenase;protein_id=YP_001531431.1;transl_table=11
NC_009952.1	RefSeq	gene	81262	82386	.	-	.	ID=gene80;Name=Dshi_0082;Dbxref=GeneID:5711705;gbkey=Gene;locus_tag=Dshi_0082
NC_009952.1	RefSeq	CDS	81262	82386	.	-	0	ID=cds79;Name=YP_001531432.1;Parent=gene80;Note=KEGG: rde:RD1_0227 hypothetical protein%2C small signalpeptide;Dbxref=Genbank:YP_001531432.1,GeneID:5711705;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531432.1;transl_table=11
NC_009952.1	RefSeq	gene	82492	83097	.	-	.	ID=gene81;Name=leuD;Dbxref=GeneID:5711706;gbkey=Gene;gene=leuD;locus_tag=Dshi_0083
NC_009952.1	RefSeq	CDS	82492	83097	.	-	0	ID=cds80;Name=YP_001531433.1;Parent=gene81;Note=catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis%3B forms a heterodimer of LeuC%2FD;Dbxref=Genbank:YP_001531433.1,GeneID:5711706;gbkey=CDS;gene=leuD;product=isopropylmalate isomerase small subunit;protein_id=YP_001531433.1;transl_table=11
NC_009952.1	RefSeq	gene	83135	83662	.	-	.	ID=gene82;Name=Dshi_0084;Dbxref=GeneID:5711707;gbkey=Gene;locus_tag=Dshi_0084
NC_009952.1	RefSeq	CDS	83135	83662	.	-	0	ID=cds81;Name=YP_001531434.1;Parent=gene82;Note=KEGG: bja:blr2987 hypothetical protein%2C uncharacterized conserved protein function unknown%2C transmembrane regions%2C signalpeptide;Dbxref=Genbank:YP_001531434.1,GeneID:5711707;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531434.1;transl_table=11
NC_009952.1	RefSeq	gene	83697	85100	.	-	.	ID=gene83;Name=ipmi1;Dbxref=GeneID:5711708;gbkey=Gene;gene=ipmi1;locus_tag=Dshi_0085
NC_009952.1	RefSeq	CDS	83697	85100	.	-	0	ID=cds82;Name=YP_001531435.1;Parent=gene83;Note=dehydratase component%2C catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate;Dbxref=Genbank:YP_001531435.1,GeneID:5711708;gbkey=CDS;gene=ipmi1;product=isopropylmalate isomerase large subunit;protein_id=YP_001531435.1;transl_table=11
NC_009952.1	RefSeq	gene	85412	86014	.	+	.	ID=gene84;Name=Dshi_0086;Dbxref=GeneID:5711709;gbkey=Gene;locus_tag=Dshi_0086
NC_009952.1	RefSeq	CDS	85412	86014	.	+	0	ID=cds83;Name=YP_001531436.1;Parent=gene84;Note=PFAM: SOUL heme-binding protein KEGG: bra:BRADO5496 putative heme-binding protein%2C SOUL family%2C swissprot hit to Heme-binding-like protein At3g10130 chloroplast precursor from Arabidopsis thaliana;Dbxref=Genbank:YP_001531436.1,GeneID:5711709;gbkey=CDS;product=SOUL heme-binding protein;protein_id=YP_001531436.1;transl_table=11
NC_009952.1	RefSeq	gene	86213	86545	.	+	.	ID=gene85;Name=Dshi_0087;Dbxref=GeneID:5711710;gbkey=Gene;locus_tag=Dshi_0087
NC_009952.1	RefSeq	CDS	86213	86545	.	+	0	ID=cds84;Name=YP_001531437.1;Parent=gene85;Note=TIGRFAM: iojap-like protein PFAM: Iojap-related protein KEGG: sit:TM1040_2506 iojap-related protein%3B good ref ZP hit to iojap-related protein from Rhodobacterales bacterium HTCC2654;Dbxref=Genbank:YP_001531437.1,GeneID:5711710;gbkey=CDS;product=iojap family protein;protein_id=YP_001531437.1;transl_table=11
NC_009952.1	RefSeq	gene	86564	87034	.	+	.	ID=gene86;Name=Dshi_0088;Dbxref=GeneID:5711711;gbkey=Gene;locus_tag=Dshi_0088
NC_009952.1	RefSeq	CDS	86564	87034	.	+	0	ID=cds85;Name=YP_001531438.1;Parent=gene86;Note=SPOUT methyltransferase family protein%3B crystal structure shows homodimer%3B in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA;Dbxref=Genbank:YP_001531438.1,GeneID:5711711;gbkey=CDS;product=rRNA large subunit methyltransferase;protein_id=YP_001531438.1;transl_table=11
NC_009952.1	RefSeq	gene	87158	88675	.	+	.	ID=gene87;Name=ipgm;Dbxref=GeneID:5711712;gbkey=Gene;gene=ipgm;locus_tag=Dshi_0089
NC_009952.1	RefSeq	CDS	87158	88675	.	+	0	ID=cds86;Name=YP_001531439.1;Parent=gene87;Note=catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate;Dbxref=Genbank:YP_001531439.1,GeneID:5711712;gbkey=CDS;gene=ipgm;product=phosphoglyceromutase;protein_id=YP_001531439.1;transl_table=11
NC_009952.1	RefSeq	gene	88672	89775	.	+	.	ID=gene88;Name=ipgm;Dbxref=GeneID:5711713;gbkey=Gene;gene=ipgm;locus_tag=Dshi_0090
NC_009952.1	RefSeq	CDS	88672	89775	.	+	0	ID=cds87;Name=YP_001531440.1;Parent=gene88;Note=PFAM: peptidase M23B KEGG: rsh:Rsph17029_2592 peptidase M23B;Dbxref=Genbank:YP_001531440.1,GeneID:5711713;gbkey=CDS;product=peptidase M23B;protein_id=YP_001531440.1;transl_table=11
NC_009952.1	RefSeq	gene	89783	91120	.	+	.	ID=gene89;Name=prc;Dbxref=GeneID:5711714;gbkey=Gene;gene=prc;locus_tag=Dshi_0091
NC_009952.1	RefSeq	CDS	89783	91120	.	+	0	ID=cds88;Name=YP_001531441.1;Parent=gene89;Note=KEGG: rde:RD1_0333 carboxyl-terminal protease family protein%2C putative TIGRFAM: carboxyl-terminal protease PFAM: PDZ%2FDHR%2FGLGF domain protein%3B peptidase S41%2C high swissprot hit to Carboxy-terminal-processing protease precursor from Bartonella bacilliformis KC583%3B RBS site AGGAT;Dbxref=Genbank:YP_001531441.1,GeneID:5711714;gbkey=CDS;gene=prc;product=carboxyl-terminal protease;protein_id=YP_001531441.1;transl_table=11
NC_009952.1	RefSeq	gene	91122	91604	.	+	.	ID=gene90;Name=Dshi_0092;Dbxref=GeneID:5711715;gbkey=Gene;locus_tag=Dshi_0092
NC_009952.1	RefSeq	CDS	91122	91604	.	+	0	ID=cds89;Name=YP_001531442.1;Parent=gene90;Note=PFAM: NUDIX hydrolase KEGG: rde:RD1_0960 hydrolase%2C NUDIX family domain%3B good swissprot hit to Probable %28di%29nucleoside polyphosphate hydrolase from Silicibacter pomeroyi and Ap4A domain;Dbxref=Genbank:YP_001531442.1,GeneID:5711715;gbkey=CDS;product=NUDIX hydrolase;protein_id=YP_001531442.1;transl_table=11
NC_009952.1	RefSeq	gene	91896	92264	.	-	.	ID=gene91;Name=Dshi_0093;Dbxref=GeneID:5711716;gbkey=Gene;locus_tag=Dshi_0093
NC_009952.1	RefSeq	CDS	91896	92264	.	-	0	ID=cds90;Name=YP_001531443.1;Parent=gene91;Note=no significant BLAST hit%2C small signalpeptide%2C bad GC frame plot%2C Dshi_0100 putative transposase;Dbxref=Genbank:YP_001531443.1,GeneID:5711716;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531443.1;transl_table=11
NC_009952.1	RefSeq	gene	92411	93343	.	-	.	ID=gene92;Name=Dshi_0094;Dbxref=GeneID:5711717;gbkey=Gene;locus_tag=Dshi_0094
NC_009952.1	RefSeq	CDS	92411	93343	.	-	0	ID=cds91;Name=YP_001531444.1;Parent=gene92;Note=KEGG: rde:RD1_0345 hypothetical protein%2C domain of protease I prophage%3B no swissprot;Dbxref=Genbank:YP_001531444.1,GeneID:5711717;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531444.1;transl_table=11
NC_009952.1	RefSeq	gene	93348	94247	.	-	.	ID=gene93;Name=Dshi_0095;Dbxref=GeneID:5711718;gbkey=Gene;locus_tag=Dshi_0095
NC_009952.1	RefSeq	CDS	93348	94247	.	-	0	ID=cds92;Name=YP_001531445.1;Parent=gene93;Note=KEGG: rde:RD1_0344 hypothetical protein%2C no swissprot%2C no IPR Scan result%2C COG4397 Mu-like prophage major head subunit gpT;Dbxref=Genbank:YP_001531445.1,GeneID:5711718;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531445.1;transl_table=11
NC_009952.1	RefSeq	gene	94244	94774	.	-	.	ID=gene94;Name=Dshi_0096;Dbxref=GeneID:5711719;gbkey=Gene;locus_tag=Dshi_0096
NC_009952.1	RefSeq	CDS	94244	94774	.	-	0	ID=cds93;Name=YP_001531446.1;Parent=gene94;Note=unsure GC frame plot%2C no significant BLAST hits%2C no IPR Scan results;Dbxref=Genbank:YP_001531446.1,GeneID:5711719;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531446.1;transl_table=11
NC_009952.1	RefSeq	gene	95154	95567	.	-	.	ID=gene95;Name=Dshi_0097;Dbxref=GeneID:5711720;gbkey=Gene;locus_tag=Dshi_0097
NC_009952.1	RefSeq	CDS	95154	95567	.	-	0	ID=cds94;Name=YP_001531447.1;Parent=gene95;Note=KEGG: rde:RD1_0343 hypothetical protein%2C no swissprot%2C no IPR results%2C DUF1018 domain: This family consists of several bacterial and phage proteins of unknown function.;Dbxref=Genbank:YP_001531447.1,GeneID:5711720;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531447.1;transl_table=11
NC_009952.1	RefSeq	gene	95564	96019	.	-	.	ID=gene96;Name=Dshi_0098;Dbxref=GeneID:5711721;gbkey=Gene;locus_tag=Dshi_0098
NC_009952.1	RefSeq	CDS	95564	96019	.	-	0	ID=cds95;Name=YP_001531448.1;Parent=gene96;Note=no significant BLAST hit%2C unsure GC frame plot%2C no IPR scan result;Dbxref=Genbank:YP_001531448.1,GeneID:5711721;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531448.1;transl_table=11
NC_009952.1	RefSeq	gene	96161	96931	.	-	.	ID=gene97;Name=Dshi_0099;Dbxref=GeneID:5711722;gbkey=Gene;locus_tag=Dshi_0099
NC_009952.1	RefSeq	CDS	96161	96931	.	-	0	ID=cds96;Name=YP_001531449.1;Parent=gene97;Note=KEGG: ecs:ECs4946 putative DNA transposition protein%2C bad BLAST hits%2C AAA ATPase domain %28COG2842 Uncharacterized ATPase%2C putative transposase %29;Dbxref=Genbank:YP_001531449.1,GeneID:5711722;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531449.1;transl_table=11
NC_009952.1	RefSeq	gene	96999	98882	.	-	.	ID=gene98;Name=Dshi_0100;Dbxref=GeneID:5711723;gbkey=Gene;locus_tag=Dshi_0100
NC_009952.1	RefSeq	CDS	96999	98882	.	-	0	ID=cds97;Name=YP_001531450.1;Parent=gene98;Note=KEGG: rde:RD1_0339 transposase%2C putative%3B swissprot hit to Transposase from Enterobacteria phage Mu%3B pfam02914 Mu_transposase;Dbxref=Genbank:YP_001531450.1,GeneID:5711723;gbkey=CDS;product=putative transposase;protein_id=YP_001531450.1;transl_table=11
NC_009952.1	RefSeq	gene	99281	99538	.	+	.	ID=gene99;Name=Dshi_0101;Dbxref=GeneID:5711724;gbkey=Gene;locus_tag=Dshi_0101
NC_009952.1	RefSeq	CDS	99281	99538	.	+	0	ID=cds98;Name=YP_001531451.1;Parent=gene99;Note=unsure GC frame plot%2C no significant BLAST hits%2C no IPR Scan result;Dbxref=Genbank:YP_001531451.1,GeneID:5711724;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531451.1;transl_table=11
NC_009952.1	RefSeq	gene	99840	102824	.	+	.	ID=gene100;Name=dnaE1;Dbxref=GeneID:5711725;gbkey=Gene;gene=dnaE1;locus_tag=Dshi_0102
NC_009952.1	RefSeq	CDS	99840	102824	.	+	0	ID=cds99;Name=YP_001531452.1;Parent=gene100;Note=KEGG: rde:RD1_0336 DNA polymerase III%2C alpha subunit TIGRFAM: DNA polymerase III%2C alpha subunit PFAM: DNA polymerase III alpha subunit SMART: phosphoesterase PHP domain protein;Dbxref=Genbank:YP_001531452.1,GeneID:5711725;gbkey=CDS;gene=dnaE1;product=DNA polymerase III subunit alpha;protein_id=YP_001531452.1;transl_table=11
NC_009952.1	RefSeq	gene	102930	104042	.	+	.	ID=gene101;Name=adhI;Dbxref=GeneID:5711726;gbkey=Gene;gene=adhI;locus_tag=Dshi_0103
NC_009952.1	RefSeq	CDS	102930	104042	.	+	0	ID=cds100;Name=YP_001531453.1;Parent=gene101;Note=TIGRFAM: Alcohol dehydrogenase class III%2FS-%28hydroxymethyl%29glutathione dehydrogenase PFAM: Alcohol dehydrogenase zinc-binding domain protein%3B Alcohol dehydrogenase GroES domain protein KEGG: sil:SPOA0272 glutathione-dependent formaldehyde dehydrogenase;Dbxref=Genbank:YP_001531453.1,GeneID:5711726;gbkey=CDS;gene=adhI;product=alcohol dehydrogenase class III%2FS-%28hydroxymethyl%29glutathione dehydrogenase;protein_id=YP_001531453.1;transl_table=11
NC_009952.1	RefSeq	gene	104039	104527	.	+	.	ID=gene102;Name=adhI;Dbxref=GeneID:5711727;gbkey=Gene;gene=adhI;locus_tag=Dshi_0104
NC_009952.1	RefSeq	CDS	104039	104527	.	+	0	ID=cds101;Name=YP_001531454.1;Parent=gene102;Note=PFAM: GCN5-related N-acetyltransferase KEGG: rle:pRL110290 putative acetyltransferase%2C no significant swissprot%2C but middle Ref YP hit to putative acetyltransferase from Rhizobium leguminosarum bv. viciae 3841;Dbxref=Genbank:YP_001531454.1,GeneID:5711727;gbkey=CDS;product=N-acetyltransferase GCN5;protein_id=YP_001531454.1;transl_table=11
NC_009952.1	RefSeq	gene	104539	105249	.	+	.	ID=gene103;Name=Dshi_0105;Dbxref=GeneID:5711728;gbkey=Gene;locus_tag=Dshi_0105
NC_009952.1	RefSeq	CDS	104539	105249	.	+	0	ID=cds102;Name=YP_001531455.1;Parent=gene103;Note=PFAM: protein of unknown function DUF88 KEGG: jan:Jann_0048 protein of unknown function DUF88%3B no swissprot;Dbxref=Genbank:YP_001531455.1,GeneID:5711728;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531455.1;transl_table=11
NC_009952.1	RefSeq	gene	105246	105869	.	-	.	ID=gene104;Name=Dshi_0106;Dbxref=GeneID:5711729;gbkey=Gene;locus_tag=Dshi_0106
NC_009952.1	RefSeq	CDS	105246	105869	.	-	0	ID=cds103;Name=YP_001531456.1;Parent=gene104;Note=PFAM: regulatory protein TetR KEGG: rsh:Rsph17029_2507 transcriptional regulator%2C TetR family%3B TetR family;Dbxref=Genbank:YP_001531456.1,GeneID:5711729;gbkey=CDS;product=transcriptional regulator;protein_id=YP_001531456.1;transl_table=11
NC_009952.1	RefSeq	gene	105989	106960	.	+	.	ID=gene105;Name=Dshi_0107;Dbxref=GeneID:5711730;gbkey=Gene;locus_tag=Dshi_0107
NC_009952.1	RefSeq	CDS	105989	106960	.	+	0	ID=cds104;Name=YP_001531457.1;Parent=gene105;Note=PFAM: Rubrerythrin%3B protein of unknown function DUF125 transmembrane KEGG: sil:SPO3842 hypothetical protein%2C may be Rubrerythrin%2C but Rub has a C-terminal domain homologous to rubredoxin PUBMED:1657933%2C which is not detected in this case%2C just the CCC1 like domain at C-terminal%2C which could be involved in iron and manganese transport;Dbxref=Genbank:YP_001531457.1,GeneID:5711730;gbkey=CDS;product=ferritin-like protein;protein_id=YP_001531457.1;transl_table=11
NC_009952.1	RefSeq	gene	106968	107909	.	-	.	ID=gene106;Name=Dshi_0108;Dbxref=GeneID:5711731;gbkey=Gene;locus_tag=Dshi_0108
NC_009952.1	RefSeq	CDS	106968	107909	.	-	0	ID=cds105;Name=YP_001531458.1;Parent=gene106;Note=KEGG: syw:SYNW1655 hypothetical protein%2C best ref ZP hit to Methyltransferase type 11 from Methylobacterium sp. 4-46%2C no IPR scan results;Dbxref=Genbank:YP_001531458.1,GeneID:5711731;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531458.1;transl_table=11
NC_009952.1	RefSeq	gene	108100	109035	.	+	.	ID=gene107;Name=Dshi_0109;Dbxref=GeneID:5711732;gbkey=Gene;locus_tag=Dshi_0109
NC_009952.1	RefSeq	CDS	108100	109035	.	+	0	ID=cds106;Name=YP_001531459.1;Parent=gene107;Note=PFAM: Auxin Efflux Carrier KEGG: jan:Jann_0051 auxin efflux carrier%2C best swissprot hit to Putative malonate transporter from Sinorhizobium meliloti %28Rhizobium meliloti%29 and best ref YP hit to Auxin Efflux Carrier from Jannaschia sp. CCS1%3B COG0679 Predicted permeases;Dbxref=Genbank:YP_001531459.1,GeneID:5711732;gbkey=CDS;product=auxin efflux carrier;protein_id=YP_001531459.1;transl_table=11
NC_009952.1	RefSeq	gene	109035	109487	.	+	.	ID=gene108;Name=Dshi_0110;Dbxref=GeneID:5711733;gbkey=Gene;locus_tag=Dshi_0110
NC_009952.1	RefSeq	CDS	109035	109487	.	+	0	ID=cds107;Name=YP_001531460.1;Parent=gene108;Note=PFAM: protein of unknown function DUF188 KEGG: rde:RD1_0321 YaiI%2FYqxD family protein%2C putative;Dbxref=Genbank:YP_001531460.1,GeneID:5711733;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531460.1;transl_table=11
NC_009952.1	RefSeq	gene	109578	110813	.	-	.	ID=gene109;Name=Dshi_0111;Dbxref=GeneID:5711734;gbkey=Gene;locus_tag=Dshi_0111
NC_009952.1	RefSeq	CDS	109578	110813	.	-	0	ID=cds108;Name=YP_001531461.1;Parent=gene109;Note=PFAM: major facilitator superfamily MFS_1 KEGG: rde:RD1_0325 transmembrane transporter%2C major facilitator family%2C putative%2C COG2814 Arabinose efflux permease%3B major facilitator superfamily %28MFS%29;Dbxref=Genbank:YP_001531461.1,GeneID:5711734;gbkey=CDS;product=transmembrane transporter;protein_id=YP_001531461.1;transl_table=11
NC_009952.1	RefSeq	gene	110834	112003	.	+	.	ID=gene110;Name=Dshi_0112;Dbxref=GeneID:5711735;gbkey=Gene;locus_tag=Dshi_0112
NC_009952.1	RefSeq	CDS	110834	112003	.	+	0	ID=cds109;Name=YP_001531462.1;Parent=gene110;Note=PFAM: AFG1-family ATPase KEGG: rde:RD1_0326 ATPase%2C AFG1 family protein;Dbxref=Genbank:YP_001531462.1,GeneID:5711735;gbkey=CDS;product=AFG1 family ATPase;protein_id=YP_001531462.1;transl_table=11
NC_009952.1	RefSeq	gene	112059	112541	.	-	.	ID=gene111;Name=ahpC;Dbxref=GeneID:5711736;gbkey=Gene;gene=ahpC;locus_tag=Dshi_0113
NC_009952.1	RefSeq	CDS	112059	112541	.	-	0	ID=cds110;Name=YP_001531463.1;Parent=gene111;Note=PFAM: alkyl hydroperoxide reductase%2F Thiol specific antioxidant%2F Mal allergen%3B Redoxin domain protein KEGG: rsh:Rsph17029_2558 redoxin domain protein%3B good swissprot hit to Peroxiredoxin-2E-2%2C chloroplast precursor from Oryza sativa and Ref ZP hit toantioxidant%2C AhpC%2FTsa family%2C putative from Roseobacter sp. AzwK-3b;Dbxref=Genbank:YP_001531463.1,GeneID:5711736;gbkey=CDS;gene=ahpC;product=redoxin;protein_id=YP_001531463.1;transl_table=11
NC_009952.1	RefSeq	gene	112628	113833	.	+	.	ID=gene112;Name=Dshi_0114;Dbxref=GeneID:5711737;gbkey=Gene;locus_tag=Dshi_0114
NC_009952.1	RefSeq	CDS	112628	113833	.	+	0	ID=cds111;Name=YP_001531464.1;Parent=gene112;Note=PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase KEGG: sil:SPO3737 pyridine nucleotide-disulphide oxidoreductase family protein%3B also good swissprot hits to Rhodocoxin reductase from Rhodococcus erythropolis;Dbxref=Genbank:YP_001531464.1,GeneID:5711737;gbkey=CDS;product=pyridine nucleotide-disulfide oxidoreductase family protein;protein_id=YP_001531464.1;transl_table=11
NC_009952.1	RefSeq	gene	113830	114387	.	+	.	ID=gene113;Name=Dshi_0115;Dbxref=GeneID:5711738;gbkey=Gene;locus_tag=Dshi_0115
NC_009952.1	RefSeq	CDS	113830	114387	.	+	0	ID=cds112;Name=YP_001531465.1;Parent=gene113;Note=TIGRFAM: putative methyltransferase PFAM: conserved hypothetical protein KEGG: sil:SPO3738 methyltransferase%2C putative;Dbxref=Genbank:YP_001531465.1,GeneID:5711738;gbkey=CDS;product=putative methyltransferase;protein_id=YP_001531465.1;transl_table=11
NC_009952.1	RefSeq	gene	114678	115730	.	-	.	ID=gene114;Name=Dshi_0116;Dbxref=GeneID:5711739;gbkey=Gene;locus_tag=Dshi_0116
NC_009952.1	RefSeq	CDS	114678	115730	.	-	0	ID=cds113;Name=YP_001531466.1;Parent=gene114;Note=PFAM: TRAP dicarboxylate transporter- DctP subunit KEGG: pol:Bpro_2121 TRAP dicarboxylate transporter-DctP subunit;Dbxref=Genbank:YP_001531466.1,GeneID:5711739;gbkey=CDS;product=TRAP dicarboxylate transporter subunit DctP;protein_id=YP_001531466.1;transl_table=11
NC_009952.1	RefSeq	gene	116582	117397	.	-	.	ID=gene115;Name=map;Dbxref=GeneID:5711740;gbkey=Gene;gene=map;locus_tag=Dshi_0117
NC_009952.1	RefSeq	CDS	116582	117397	.	-	0	ID=cds114;Name=YP_001531467.1;Parent=gene115;Note=KEGG: sit:TM1040_2469 methionine aminopeptidase%2C type I TIGRFAM: methionine aminopeptidase%2C type I PFAM: peptidase M24%3B also high swissprot to Methionine aminopeptidase %28MAP%29 %28Peptidase M%29 from Rickettsia prowazekii;Dbxref=Genbank:YP_001531467.1,GeneID:5711740;gbkey=CDS;gene=map;product=methionine aminopeptidase;protein_id=YP_001531467.1;transl_table=11
NC_009952.1	RefSeq	gene	117444	118178	.	-	.	ID=gene116;Name=sfsA;Dbxref=GeneID:5711741;gbkey=Gene;gene=sfsA;locus_tag=Dshi_0118
NC_009952.1	RefSeq	CDS	117444	118178	.	-	0	ID=cds115;Name=YP_001531468.1;Parent=gene116;Note=Regulatory factor involved in maltose metabolism;Dbxref=Genbank:YP_001531468.1,GeneID:5711741;gbkey=CDS;gene=sfsA;product=sugar fermentation stimulation protein A;protein_id=YP_001531468.1;transl_table=11
NC_009952.1	RefSeq	gene	118227	118955	.	+	.	ID=gene117;Name=mogA;Dbxref=GeneID:5711742;gbkey=Gene;gene=mogA;locus_tag=Dshi_0119
NC_009952.1	RefSeq	CDS	118227	118955	.	+	0	ID=cds116;Name=YP_001531469.1;Parent=gene117;Note=PFAM: molybdopterin binding domain KEGG: rsh:Rsph17029_2583 molybdopterin binding domain COG1058 - Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA;Dbxref=Genbank:YP_001531469.1,GeneID:5711742;gbkey=CDS;gene=mogA;product=molybdenum cofactor biosynthesis protein MogA;protein_id=YP_001531469.1;transl_table=11
NC_009952.1	RefSeq	gene	118952	119677	.	+	.	ID=gene118;Name=mogA;Dbxref=GeneID:5711743;gbkey=Gene;gene=mogA;locus_tag=Dshi_0120
NC_009952.1	RefSeq	CDS	118952	119677	.	+	0	ID=cds117;Name=YP_001531470.1;Parent=gene118;Note=PFAM: GCN5-related N-acetyltransferase KEGG: rsq:Rsph17025_2991 GCN5-related N-acetyltransferase;Dbxref=Genbank:YP_001531470.1,GeneID:5711743;gbkey=CDS;product=N-acetyltransferase GCN5;protein_id=YP_001531470.1;transl_table=11
NC_009952.1	RefSeq	gene	119674	120249	.	+	.	ID=gene119;Name=Dshi_0121;Dbxref=GeneID:5711744;gbkey=Gene;locus_tag=Dshi_0121
NC_009952.1	RefSeq	CDS	119674	120249	.	+	0	ID=cds118;Name=YP_001531471.1;Parent=gene119;Note=TIGRFAM: alkylhydroperoxidase like protein%2C AhpD family%3B uncharacterized peroxidase-related enzyme PFAM: Carboxymuconolactone decarboxylase KEGG: sit:TM1040_2465 uncharacterised peroxidase-related%2C no swissprot%2C but high Ref hits;Dbxref=Genbank:YP_001531471.1,GeneID:5711744;gbkey=CDS;product=peroxidase-like protein;protein_id=YP_001531471.1;transl_table=11
NC_009952.1	RefSeq	gene	120246	121178	.	+	.	ID=gene120;Name=Dshi_0122;Dbxref=GeneID:5711745;gbkey=Gene;locus_tag=Dshi_0122
NC_009952.1	RefSeq	CDS	120246	121178	.	+	0	ID=cds119;Name=YP_001531472.1;Parent=gene120;Note=PFAM: OmpA%2FMotB domain protein KEGG: rsh:Rsph17029_2585 OmpA%2FMotB domain protein%3B COG2885 Outer membrane protein and related peptidoglycan-associated %28lipo%29proteins;Dbxref=Genbank:YP_001531472.1,GeneID:5711745;gbkey=CDS;product=OmpA%2FMotB domain-containing protein;protein_id=YP_001531472.1;transl_table=11
NC_009952.1	RefSeq	gene	121186	122094	.	-	.	ID=gene121;Name=Dshi_0123;Dbxref=GeneID:5711746;gbkey=Gene;locus_tag=Dshi_0123
NC_009952.1	RefSeq	CDS	121186	122094	.	-	0	ID=cds120;Name=YP_001531473.1;Parent=gene121;Note=PFAM: regulatory protein LysR%3B LysR substrate-binding KEGG: sit:TM1040_2460 transcriptional regulator%2C LysR family%2C good RBS site AGGAT%3B LysR family;Dbxref=Genbank:YP_001531473.1,GeneID:5711746;gbkey=CDS;product=transcriptional regulator;protein_id=YP_001531473.1;transl_table=11
NC_009952.1	RefSeq	gene	122240	122824	.	-	.	ID=gene122;Name=Dshi_0124;Dbxref=GeneID:5711747;gbkey=Gene;locus_tag=Dshi_0124
NC_009952.1	RefSeq	CDS	122240	122824	.	-	0	ID=cds121;Name=YP_001531474.1;Parent=gene122;Note=TIGRFAM: intracellular protease%2C PfpI family PFAM: ThiJ%2FPfpI domain protein KEGG: jan:Jann_1867 peptidase C56%2C PfpI%3B PfpI family;Dbxref=Genbank:YP_001531474.1,GeneID:5711747;gbkey=CDS;product=intracellular protease;protein_id=YP_001531474.1;transl_table=11
NC_009952.1	RefSeq	gene	122863	124881	.	-	.	ID=gene123;Name=fadH;Dbxref=GeneID:5711748;gbkey=Gene;gene=fadH;locus_tag=Dshi_0125
NC_009952.1	RefSeq	CDS	122863	124881	.	-	0	ID=cds122;Name=YP_001531475.1;Parent=gene123;Note=PFAM: NADH:flavin oxidoreductase%2FNADH oxidase%3B FAD-dependent pyridine nucleotide-disulphide oxidoreductase KEGG: sit:TM1040_2458 NADH:flavin oxidoreductase%2FNADH oxidase%2C high swissprot to 2%2C4-dienoyl-CoA reductase %5BNADPH%5D from Escherichia coli K12;Dbxref=Genbank:YP_001531475.1,GeneID:5711748;gbkey=CDS;gene=fadH;product=NADPH:2%2C4-dienoyl-CoA reductase;protein_id=YP_001531475.1;transl_table=11
NC_009952.1	RefSeq	gene	124985	125401	.	-	.	ID=gene124;Name=Dshi_0126;Dbxref=GeneID:5711749;gbkey=Gene;locus_tag=Dshi_0126
NC_009952.1	RefSeq	CDS	124985	125401	.	-	0	ID=cds123;Name=YP_001531476.1;Parent=gene124;Note=KEGG: sit:TM1040_2681 hypothetical protein%2C bad BLAST hits%2C no IPR Scan results;Dbxref=Genbank:YP_001531476.1,GeneID:5711749;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531476.1;transl_table=11
NC_009952.1	RefSeq	gene	125398	126168	.	-	.	ID=gene125;Name=Dshi_0127;Dbxref=GeneID:5711750;gbkey=Gene;locus_tag=Dshi_0127
NC_009952.1	RefSeq	CDS	125398	126168	.	-	0	ID=cds124;Name=YP_001531477.1;Parent=gene125;Note=KEGG: sit:TM1040_2680 hypothetical protein%3B no swissprot%2C no IPR Scan results;Dbxref=Genbank:YP_001531477.1,GeneID:5711750;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531477.1;transl_table=11
NC_009952.1	RefSeq	gene	126287	126946	.	-	.	ID=gene126;Name=Dshi_0128;Dbxref=GeneID:5711751;gbkey=Gene;locus_tag=Dshi_0128
NC_009952.1	RefSeq	CDS	126287	126946	.	-	0	ID=cds125;Name=YP_001531478.1;Parent=gene126;Note=KEGG: jan:Jann_0063 hypothetical protein%2C no significant swissprot%2C middle Ref hit;Dbxref=Genbank:YP_001531478.1,GeneID:5711751;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531478.1;transl_table=11
NC_009952.1	RefSeq	gene	126918	128651	.	-	.	ID=gene127;Name=ilvD1;Dbxref=GeneID:5711752;gbkey=Gene;gene=ilvD1;locus_tag=Dshi_0129
NC_009952.1	RefSeq	CDS	126918	128651	.	-	0	ID=cds126;Name=YP_001531479.1;Parent=gene127;Note=catalyzes the dehydration of 2%2C3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis;Dbxref=Genbank:YP_001531479.1,GeneID:5711752;gbkey=CDS;gene=ilvD1;product=dihydroxy-acid dehydratase;protein_id=YP_001531479.1;transl_table=11
NC_009952.1	RefSeq	gene	128795	129697	.	+	.	ID=gene128;Name=abi;Dbxref=GeneID:5711753;gbkey=Gene;gene=abi;locus_tag=Dshi_0130
NC_009952.1	RefSeq	CDS	128795	129697	.	+	0	ID=cds127;Name=YP_001531480.1;Parent=gene128;Note=PFAM: Abortive infection protein KEGG: jan:Jann_0061 abortive infection protein%2C no significant swissprot;Dbxref=Genbank:YP_001531480.1,GeneID:5711753;gbkey=CDS;gene=abi;product=abortive infection protein;protein_id=YP_001531480.1;transl_table=11
NC_009952.1	RefSeq	gene	129763	130725	.	+	.	ID=gene129;Name=accD;Dbxref=GeneID:5711599;gbkey=Gene;gene=accD;locus_tag=Dshi_0131
NC_009952.1	RefSeq	CDS	129763	130725	.	+	0	ID=cds128;Name=YP_001531481.1;Parent=gene129;Note=TIGRFAM: acetyl-CoA carboxylase%2C carboxyl transferase%2C beta subunit KEGG: pde:Pden_1987 acetyl-CoA carboxylase%2C carboxyl transferase%2C beta subunit%2C high swissprot%3B carboxyl transferase%2C beta subunit;Dbxref=Genbank:YP_001531481.1,GeneID:5711599;gbkey=CDS;gene=accD;product=acetyl-CoA carboxylase;protein_id=YP_001531481.1;transl_table=11
NC_009952.1	RefSeq	gene	130730	131998	.	+	.	ID=gene130;Name=folC;Dbxref=GeneID:5711600;gbkey=Gene;gene=folC;locus_tag=Dshi_0132
NC_009952.1	RefSeq	CDS	130730	131998	.	+	0	ID=cds129;Name=YP_001531482.1;Parent=gene130;Note=TIGRFAM: FolC bifunctional protein PFAM: cytoplasmic peptidoglycan synthetase domain protein%3B Mur ligase middle domain protein KEGG: sil:SPO3818 FolC bifunctional protein;Dbxref=Genbank:YP_001531482.1,GeneID:5711600;gbkey=CDS;gene=folC;product=folylpolyglutamate synthase;protein_id=YP_001531482.1;transl_table=11
NC_009952.1	RefSeq	gene	132102	133061	.	+	.	ID=gene131;Name=Dshi_0133;Dbxref=GeneID:5711601;gbkey=Gene;locus_tag=Dshi_0133
NC_009952.1	RefSeq	CDS	132102	133061	.	+	0	ID=cds130;Name=YP_001531483.1;Parent=gene131;Note=KEGG: sil:SPO2586 type I secretion target repeat protein%2C middle Ref ZP hit%2C no swissprot%2C hedgehog domain: in eukaryotes involved in cell growth and differentiation;Dbxref=Genbank:YP_001531483.1,GeneID:5711601;gbkey=CDS;product=putative type I secretion target repeat protein;protein_id=YP_001531483.1;transl_table=11
NC_009952.1	RefSeq	gene	133058	133351	.	-	.	ID=gene132;Name=pcd;Dbxref=GeneID:5711602;gbkey=Gene;gene=pcd;locus_tag=Dshi_0134
NC_009952.1	RefSeq	CDS	133058	133351	.	-	0	ID=cds131;Name=YP_001531484.1;Parent=gene132;Note=PFAM: transcriptional coactivator%2Fpterin dehydratase KEGG: rde:RD1_0944 pterin-4-alpha-carbinolamine dehydratase;Dbxref=Genbank:YP_001531484.1,GeneID:5711602;gbkey=CDS;gene=pcd;product=pterin-4-alpha-carbinolamine dehydratase;protein_id=YP_001531484.1;transl_table=11
NC_009952.1	RefSeq	gene	133351	134571	.	-	.	ID=gene133;Name=pcd;Dbxref=GeneID:5711603;gbkey=Gene;gene=pcd;locus_tag=Dshi_0135
NC_009952.1	RefSeq	CDS	133351	134571	.	-	0	ID=cds132;Name=YP_001531485.1;Parent=gene133;Note=PFAM: protein of unknown function DUF482 KEGG: sil:SPO3732 hypothetical protein%2C no swissprot;Dbxref=Genbank:YP_001531485.1,GeneID:5711603;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531485.1;transl_table=11
NC_009952.1	RefSeq	gene	134622	135395	.	-	.	ID=gene134;Name=ugpQ;Dbxref=GeneID:5711604;gbkey=Gene;gene=ugpQ;locus_tag=Dshi_0136
NC_009952.1	RefSeq	CDS	134622	135395	.	-	0	ID=cds133;Name=YP_001531486.1;Parent=gene134;Note=PFAM: glycerophosphoryl diester phosphodiesterase KEGG: jan:Jann_0436 glycerophosphoryl diester phosphodiesterase PRK: ugpQ;Dbxref=Genbank:YP_001531486.1,GeneID:5711604;gbkey=CDS;gene=ugpQ;product=cytosolic glycerophosphoryl diester phosphodiesterase;protein_id=YP_001531486.1;transl_table=11
NC_009952.1	RefSeq	gene	135392	135859	.	-	.	ID=gene135;Name=ugpQ;Dbxref=GeneID:5711605;gbkey=Gene;gene=ugpQ;locus_tag=Dshi_0137
NC_009952.1	RefSeq	CDS	135392	135859	.	-	0	ID=cds134;Name=YP_001531487.1;Parent=gene135;Note=PFAM: Endoribonuclease L-PSP COG0251-Putative translation initiation inhibitor%2C yjgF family;Dbxref=Genbank:YP_001531487.1,GeneID:5711605;gbkey=CDS;product=endoribonuclease L-PSP;protein_id=YP_001531487.1;transl_table=11
NC_009952.1	RefSeq	gene	135882	137189	.	-	.	ID=gene136;Name=hlyD;Dbxref=GeneID:5711606;gbkey=Gene;gene=hlyD;locus_tag=Dshi_0138
NC_009952.1	RefSeq	CDS	135882	137189	.	-	0	ID=cds135;Name=YP_001531488.1;Parent=gene136;Note=TIGRFAM: type I secretion membrane fusion protein%2C HlyD family PFAM: secretion protein HlyD family protein KEGG: sil:SPO3729 type I secretion membrane fusion protein%2C HlyD family%3B also middle swissprot hit to Proteases secretion protein prtE from Erwinia chrysanthemi%3B HlyD family;Dbxref=Genbank:YP_001531488.1,GeneID:5711606;gbkey=CDS;gene=hlyD;product=type I secretion membrane fusion protein;protein_id=YP_001531488.1;transl_table=11
NC_009952.1	RefSeq	gene	137186	138925	.	-	.	ID=gene137;Name=hlyD;Dbxref=GeneID:5711607;gbkey=Gene;gene=hlyD;locus_tag=Dshi_0139
NC_009952.1	RefSeq	CDS	137186	138925	.	-	0	ID=cds136;Name=YP_001531489.1;Parent=gene137;Note=TIGRFAM: type I secretion system ATPase PFAM: ABC transporter related contains:pfam00005 pfam00664;Dbxref=Genbank:YP_001531489.1,GeneID:5711607;gbkey=CDS;product=type I secretion system ATPase;protein_id=YP_001531489.1;transl_table=11
NC_009952.1	RefSeq	gene	139098	139919	.	+	.	ID=gene138;Name=Dshi_0140;Dbxref=GeneID:5711608;gbkey=Gene;locus_tag=Dshi_0140
NC_009952.1	RefSeq	CDS	139098	139919	.	+	0	ID=cds137;Name=YP_001531490.1;Parent=gene138;Note=PFAM: VacJ family lipoprotein KEGG: rsp:RSP_0891 putative lipoprotein%2C middle swissprot to Lipoprotein vacJ precursor from Shigella flexneri;Dbxref=Genbank:YP_001531490.1,GeneID:5711608;gbkey=CDS;product=VacJ family lipoprotein;protein_id=YP_001531490.1;transl_table=11
NC_009952.1	RefSeq	gene	139909	140529	.	+	.	ID=gene139;Name=ttg2D;Dbxref=GeneID:5711609;gbkey=Gene;gene=ttg2D;locus_tag=Dshi_0141
NC_009952.1	RefSeq	CDS	139909	140529	.	+	0	ID=cds138;Name=YP_001531491.1;Parent=gene139;Note=PFAM: toluene tolerance family protein KEGG: rde:RD1_0939 toluene tolerance family protein%2C putative%3B swissprot hit to Protein yrbC precursor from Escherichia coli K12 %28ABC transporter related%29;Dbxref=Genbank:YP_001531491.1,GeneID:5711609;gbkey=CDS;gene=ttg2D;product=toluene tolerance family protein;protein_id=YP_001531491.1;transl_table=11
NC_009952.1	RefSeq	gene	140693	142882	.	-	.	ID=gene140;Name=mrcB;Dbxref=GeneID:5711610;gbkey=Gene;gene=mrcB;locus_tag=Dshi_0142
NC_009952.1	RefSeq	CDS	140693	142882	.	-	0	ID=cds139;Name=YP_001531492.1;Parent=gene140;Note=KEGG: rde:RD1_0938 penicillin-binding protein%2C 1A family TIGRFAM: penicillin-binding protein%2C 1A family PFAM: glycosyl transferase family 51%3B penicillin-binding protein transpeptidase%3B 1A family;Dbxref=Genbank:YP_001531492.1,GeneID:5711610;gbkey=CDS;gene=mrcB;product=penicillin-binding protein;protein_id=YP_001531492.1;transl_table=11
NC_009952.1	RefSeq	gene	143197	143535	.	+	.	ID=gene141;Name=glnK;Dbxref=GeneID:5711611;gbkey=Gene;gene=glnK;locus_tag=Dshi_0143
NC_009952.1	RefSeq	CDS	143197	143535	.	+	0	ID=cds140;Name=YP_001531493.1;Parent=gene141;Note=PFAM: nitrogen regulatory protein P-II KEGG: jan:Jann_4056 nitrogen regulatory protein P-II %28GlnB%2C GlnK%29%2C glnK-amtB-Operon %28amtB: Dshi_1838%29%3B highly conserved gene cluster %28e.g. E. coli%2C R. capsulatus%29;Dbxref=Genbank:YP_001531493.1,GeneID:5711611;gbkey=CDS;gene=glnK;product=nitrogen regulatory protein P-II;protein_id=YP_001531493.1;transl_table=11
NC_009952.1	RefSeq	gene	143570	144883	.	+	.	ID=gene142;Name=amtB;Dbxref=GeneID:5711612;gbkey=Gene;gene=amtB;locus_tag=Dshi_0144
NC_009952.1	RefSeq	CDS	143570	144883	.	+	0	ID=cds141;Name=YP_001531494.1;Parent=gene142;Note=TIGRFAM: ammonium transporter PFAM: Rh family protein%2Fammonium transporter KEGG: sit:TM1040_2630 ammonium transporter%2C high swissprot to Putative ammonium transporter sll0108 from Synechocystis sp. PCC 6803%3B sequence homolgies%3B gene arrangement %28-%3E glnK%2C Dshi_0143%29;Dbxref=Genbank:YP_001531494.1,GeneID:5711612;gbkey=CDS;gene=amtB;product=ammonium transporter;protein_id=YP_001531494.1;transl_table=11
NC_009952.1	RefSeq	gene	145044	146222	.	-	.	ID=gene143;Name=Dshi_0145;Dbxref=GeneID:5711613;gbkey=Gene;locus_tag=Dshi_0145
NC_009952.1	RefSeq	CDS	145044	146222	.	-	0	ID=cds142;Name=YP_001531495.1;Parent=gene143;Note=catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate;Dbxref=Genbank:YP_001531495.1,GeneID:5711613;gbkey=CDS;product=aromatic amino acid aminotransferase;protein_id=YP_001531495.1;transl_table=11
NC_009952.1	RefSeq	gene	146231	147106	.	-	.	ID=gene144;Name=sseA;Dbxref=GeneID:5711614;gbkey=Gene;gene=sseA;locus_tag=Dshi_0146
NC_009952.1	RefSeq	CDS	146231	147106	.	-	0	ID=cds143;Name=YP_001531496.1;Parent=gene144;Note=PFAM: Rhodanese domain protein KEGG: rsh:Rsph17029_2544 3-mercaptopyruvate sulfurtransferase%3B both%2C high swissprot and Ref YP hits to 3-mercaptopyruvate sulfurtransferase %28sseA%29;Dbxref=Genbank:YP_001531496.1,GeneID:5711614;gbkey=CDS;gene=sseA;product=3-mercaptopyruvate sulfurtransferase;protein_id=YP_001531496.1;transl_table=11
NC_009952.1	RefSeq	gene	147392	147874	.	-	.	ID=gene145;Name=smpB;Dbxref=GeneID:5711615;gbkey=Gene;gene=smpB;locus_tag=Dshi_0147
NC_009952.1	RefSeq	CDS	147392	147874	.	-	0	ID=cds144;Name=YP_001531497.1;Parent=gene145;Note=binds to ssrA RNA %28tmRNA%29 and is required for its successful binding to ribosomes%3B also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site%3B SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus%3B both the tmRNA and SmpB are regulated in cell cycle-dependent manner%3B functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation;Dbxref=Genbank:YP_001531497.1,GeneID:5711615;gbkey=CDS;gene=smpB;product=SsrA-binding protein;protein_id=YP_001531497.1;transl_table=11
NC_009952.1	RefSeq	gene	147905	148354	.	-	.	ID=gene146;Name=Dshi_0148;Dbxref=GeneID:5711616;gbkey=Gene;locus_tag=Dshi_0148
NC_009952.1	RefSeq	CDS	147905	148354	.	-	0	ID=cds145;Name=YP_001531498.1;Parent=gene146;Note=PFAM: GCN5-related N-acetyltransferase KEGG: bur:Bcep18194_B2857 GCN5-related N-acetyltransferase%2C bad BLAST hits;Dbxref=Genbank:YP_001531498.1,GeneID:5711616;gbkey=CDS;product=N-acetyltransferase GCN5;protein_id=YP_001531498.1;transl_table=11
NC_009952.1	RefSeq	gene	148351	149226	.	-	.	ID=gene147;Name=dapA;Dbxref=GeneID:5711617;gbkey=Gene;gene=dapA;locus_tag=Dshi_0149
NC_009952.1	RefSeq	CDS	148351	149226	.	-	0	ID=cds146;Name=YP_001531499.1;Parent=gene147;Note=catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis;Dbxref=Genbank:YP_001531499.1,GeneID:5711617;gbkey=CDS;gene=dapA;product=dihydrodipicolinate synthase;protein_id=YP_001531499.1;transl_table=11
NC_009952.1	RefSeq	gene	149400	151349	.	+	.	ID=gene148;Name=Dshi_0150;Dbxref=GeneID:5711618;gbkey=Gene;locus_tag=Dshi_0150
NC_009952.1	RefSeq	CDS	149400	151349	.	+	0	ID=cds147;Name=YP_001531500.1;Parent=gene148;Note=PFAM: Lytic transglycosylase catalytic KEGG: rsh:Rsph17029_2541 lytic transglycosylase%2C catalytic%3B swissprot to Putative soluble lytic murein transglycosylase precursor from Haemophilus influenzae%3B IPR Scan: domain to bacterial muramidases superfamily;Dbxref=Genbank:YP_001531500.1,GeneID:5711618;gbkey=CDS;product=putative lytic transglycosylase catalytic subunit;protein_id=YP_001531500.1;transl_table=11
NC_009952.1	RefSeq	gene	151387	152265	.	-	.	ID=gene149;Name=Dshi_0151;Dbxref=GeneID:5711619;gbkey=Gene;locus_tag=Dshi_0151
NC_009952.1	RefSeq	CDS	151387	152265	.	-	0	ID=cds148;Name=YP_001531501.1;Parent=gene149;Note=PFAM: protein of unknown function DUF6 transmembrane KEGG: jan:Jann_0141 protein of unknown function DUF6%2C transmembrane%2C swissprot hit to S-adenosylmethionine uptake transporter from Rickettsia typhi %28DMT related%29;Dbxref=Genbank:YP_001531501.1,GeneID:5711619;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531501.1;transl_table=11
NC_009952.1	RefSeq	gene	152262	152954	.	-	.	ID=gene150;Name=Dshi_0152;Dbxref=GeneID:5711620;gbkey=Gene;locus_tag=Dshi_0152
NC_009952.1	RefSeq	CDS	152262	152954	.	-	0	ID=cds149;Name=YP_001531502.1;Parent=gene150;Note=PFAM: protein of unknown function DUF752 KEGG: sil:SPO3553 hypothetical protein;Dbxref=Genbank:YP_001531502.1,GeneID:5711620;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531502.1;transl_table=11
NC_009952.1	RefSeq	gene	153035	154093	.	+	.	ID=gene151;Name=dao;Dbxref=GeneID:5711621;gbkey=Gene;gene=dao;locus_tag=Dshi_0153
NC_009952.1	RefSeq	CDS	153035	154093	.	+	0	ID=cds150;Name=YP_001531503.1;Parent=gene151;Note=PFAM: FAD dependent oxidoreductase KEGG: sil:SPO3552 oxidoreductase%2C FAD-binding;Dbxref=Genbank:YP_001531503.1,GeneID:5711621;gbkey=CDS;gene=dao;product=FAD dependent oxidoreductase;protein_id=YP_001531503.1;transl_table=11
NC_009952.1	RefSeq	gene	154275	154820	.	-	.	ID=gene152;Name=Dshi_0154;Dbxref=GeneID:5711622;gbkey=Gene;locus_tag=Dshi_0154
NC_009952.1	RefSeq	CDS	154275	154820	.	-	0	ID=cds151;Name=YP_001531504.1;Parent=gene152;Note=PFAM: NAD%28P%29H dehydrogenase %28quinone%29%3B NADPH-dependent FMN reductase KEGG: sit:TM1040_2447 NADPH-dependent FMN reductase%3B predicted flavoprotein COG0431;Dbxref=Genbank:YP_001531504.1,GeneID:5711622;gbkey=CDS;product=NADPH-dependent FMN reductase;protein_id=YP_001531504.1;transl_table=11
NC_009952.1	RefSeq	gene	155531	155887	.	+	.	ID=gene153;Name=lrgA;Dbxref=GeneID:5711623;gbkey=Gene;gene=lrgA;locus_tag=Dshi_0155
NC_009952.1	RefSeq	CDS	155531	155887	.	+	0	ID=cds152;Name=YP_001531505.1;Parent=gene153;Note=PFAM: LrgA family protein%3B bad Ref ZP hit to hypothetical protein RAZWK3B_06232 from Roseobacter sp. AzwK-3b no significant swissprot hit;Dbxref=Genbank:YP_001531505.1,GeneID:5711623;gbkey=CDS;gene=lrgA;product=putative LrgA family protein;protein_id=YP_001531505.1;transl_table=11
NC_009952.1	RefSeq	gene	155880	156596	.	+	.	ID=gene154;Name=lrgB;Dbxref=GeneID:5711624;gbkey=Gene;gene=lrgB;locus_tag=Dshi_0156
NC_009952.1	RefSeq	CDS	155880	156596	.	+	0	ID=cds153;Name=YP_001531506.1;Parent=gene154;Note=PFAM: LrgB family protein KEGG: pde:Pden_2740 LrgB family protein%3B gene arrangement wtih Dshi_0155 putative LrgA protein;Dbxref=Genbank:YP_001531506.1,GeneID:5711624;gbkey=CDS;gene=lrgB;product=LrgB family protein;protein_id=YP_001531506.1;transl_table=11
NC_009952.1	RefSeq	gene	156608	157222	.	+	.	ID=gene155;Name=cobA2;Dbxref=GeneID:5711625;gbkey=Gene;gene=cobA2;locus_tag=Dshi_0157
NC_009952.1	RefSeq	CDS	156608	157222	.	+	0	ID=cds154;Name=YP_001531507.1;Parent=gene155;Note=KEGG: ret:RHE_CH02488 cob%28I%29alamin adenosyltransferase protein TIGRFAM: cob%28I%29alamin adenosyltransferase PFAM: ATP:corrinoid adenosyltransferase BtuR%2FCobO%2FCobP%2C good swissprot hits%2C good RBS site AGGAT%2C the following genes are also involved in the vit. B12 biosynthese%3B alternative gene name: cobO%2FbtuR;Dbxref=Genbank:YP_001531507.1,GeneID:5711625;gbkey=CDS;gene=cobA2;product=cob%28I%29alamin adenosyltransferase;protein_id=YP_001531507.1;transl_table=11
NC_009952.1	RefSeq	gene	157466	161173	.	-	.	ID=gene156;Name=cobN;Dbxref=GeneID:5711626;gbkey=Gene;gene=cobN;locus_tag=Dshi_0158
NC_009952.1	RefSeq	CDS	157466	161173	.	-	0	ID=cds155;Name=YP_001531508.1;Parent=gene156;Note=KEGG: bov:BOV_1269 cobaltochelatase%2C CobN subunit TIGRFAM: cobaltochelatase%2C CobN subunit PFAM: CobN%2Fmagnesium chelatase%3B swissprot: high similarity to aerobic cobaltochelatase subunit cobN from Pseudomonas denitrificans%3B gene arangement from Dshi_0157 to Dshi_0166 Vit B12 synthesis;Dbxref=Genbank:YP_001531508.1,GeneID:5711626;gbkey=CDS;gene=cobN;product=cobaltochelatase;protein_id=YP_001531508.1;transl_table=11
NC_009952.1	RefSeq	gene	161242	161751	.	-	.	ID=gene157;Name=Dshi_0159;Dbxref=GeneID:5711627;gbkey=Gene;locus_tag=Dshi_0159
NC_009952.1	RefSeq	CDS	161242	161751	.	-	0	ID=cds156;Name=YP_001531509.1;Parent=gene157;Note=no significant BLAST hits%2C no IPR Scan result%3B unsure GC frame plot;Dbxref=Genbank:YP_001531509.1,GeneID:5711627;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531509.1;transl_table=11
NC_009952.1	RefSeq	gene	162047	163126	.	-	.	ID=gene158;Name=cobW;Dbxref=GeneID:5711628;gbkey=Gene;gene=cobW;locus_tag=Dshi_0160
NC_009952.1	RefSeq	CDS	162047	163126	.	-	0	ID=cds157;Name=YP_001531510.1;Parent=gene158;Note=TIGRFAM: cobalamin biosynthesis protein CobW PFAM: cobalamin synthesis protein P47K%3B cobalamin synthesis CobW domain protein KEGG: bov:BOV_1270 cobalamin biosynthesis protein CobW%2C high swissprot hit to Protein cobW from Pseudomonas denitrificans;Dbxref=Genbank:YP_001531510.1,GeneID:5711628;gbkey=CDS;gene=cobW;product=cobalamin biosynthesis protein CobW;protein_id=YP_001531510.1;transl_table=11
NC_009952.1	RefSeq	gene	163128	163817	.	-	.	ID=gene159;Name=cbtA;Dbxref=GeneID:5711629;gbkey=Gene;gene=cbtA;locus_tag=Dshi_0161
NC_009952.1	RefSeq	CDS	163128	163817	.	-	0	ID=cds158;Name=YP_001531511.1;Parent=gene159;Note=TIGRFAM: cobalt transporter%2C subunit CbtA PFAM: Cobalt transporter subunit CbtA putative KEGG: sit:TM1040_2222 cobalt transporter subunit CbtA%2C putative%2C no swissprot%2C middle Ref hits;Dbxref=Genbank:YP_001531511.1,GeneID:5711629;gbkey=CDS;gene=cbtA;product=putative cobalt transporter subunit CbtA;protein_id=YP_001531511.1;transl_table=11
NC_009952.1	RefSeq	gene	163833	164030	.	-	.	ID=gene160;Name=cbtB;Dbxref=GeneID:5711630;gbkey=Gene;gene=cbtB;locus_tag=Dshi_0162
NC_009952.1	RefSeq	CDS	163833	164030	.	-	0	ID=cds159;Name=YP_001531512.1;Parent=gene160;Note=KEGG: pde:Pden_2524 hypothetical protein%2C no swissprot%2C bad EDO hit to cobalt transporter%2C subunit CbtB from Methylobacterium populi BJ001%2C a single transmembrane domain and four times His at C-terminal;Dbxref=Genbank:YP_001531512.1,GeneID:5711630;gbkey=CDS;gene=cbtB;product=hypothetical protein;protein_id=YP_001531512.1;transl_table=11
NC_009952.1	RefSeq	gene	164463	167915	.	+	.	ID=gene161;Name=smc;Dbxref=GeneID:5711631;gbkey=Gene;gene=smc;locus_tag=Dshi_0163
NC_009952.1	RefSeq	CDS	164463	167915	.	+	0	ID=cds160;Name=YP_001531513.1;Parent=gene161;Note=TIGRFAM: chromosome segregation protein SMC PFAM: SMC domain protein%3B SMCs flexible hinge domain protein KEGG: rde:RD1_1327 chromosome segregation protein%2C putative;Dbxref=Genbank:YP_001531513.1,GeneID:5711631;gbkey=CDS;gene=smc;product=chromosome segregation protein SMC;protein_id=YP_001531513.1;transl_table=11
NC_009952.1	RefSeq	gene	168135	169304	.	-	.	ID=gene162;Name=mltB1;Dbxref=GeneID:5711632;gbkey=Gene;gene=mltB1;locus_tag=Dshi_0164
NC_009952.1	RefSeq	CDS	168135	169304	.	-	0	ID=cds161;Name=YP_001531514.1;Parent=gene162;Note=TIGRFAM: lytic murein transglycosylase PFAM: Peptidoglycan-binding domain 1 protein KEGG: sil:SPO3226 hypothetical protein;Dbxref=Genbank:YP_001531514.1,GeneID:5711632;gbkey=CDS;gene=mltB1;product=lytic murein transglycosylase;protein_id=YP_001531514.1;transl_table=11
NC_009952.1	RefSeq	gene	169365	170276	.	-	.	ID=gene163;Name=cobD;Dbxref=GeneID:5711633;gbkey=Gene;gene=cobD;locus_tag=Dshi_0165
NC_009952.1	RefSeq	CDS	169365	170276	.	-	0	ID=cds162;Name=YP_001531515.1;Parent=gene163;Note=CobD%3B CbiD in Salmonella%3B converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group;Dbxref=Genbank:YP_001531515.1,GeneID:5711633;gbkey=CDS;gene=cobD;product=cobalamin biosynthesis protein;protein_id=YP_001531515.1;transl_table=11
NC_009952.1	RefSeq	gene	170273	171229	.	-	.	ID=gene164;Name=cobC;Dbxref=GeneID:5711634;gbkey=Gene;gene=cobC;locus_tag=Dshi_0166
NC_009952.1	RefSeq	CDS	170273	171229	.	-	0	ID=cds163;Name=YP_001531516.1;Parent=gene164;Note=PFAM: aminotransferase class I and II KEGG: sil:SPO3224 cobalamin biosynthetic protein CobC%3B gene arrangement with several genes upstream %28Dshi_0157%29 to downstream %28Dshi_0175%29%3B L-threonine-O-3-phosphate decarboxylase;Dbxref=Genbank:YP_001531516.1,GeneID:5711634;gbkey=CDS;gene=cobC;product=threonine-phosphate decarboxylase;protein_id=YP_001531516.1;transl_table=11
NC_009952.1	RefSeq	gene	171226	171609	.	-	.	ID=gene165;Name=cobC;Dbxref=GeneID:5711635;gbkey=Gene;gene=cobC;locus_tag=Dshi_0167
NC_009952.1	RefSeq	CDS	171226	171609	.	-	0	ID=cds164;Name=YP_001531517.1;Parent=gene165;Note=PFAM: protein of unknown function DUF1636 KEGG: hne:HNE_2170 hypothetical protein%3B conserved domain COG5469: predicted metal-binding protein%3B middle Ref ZP hit to hypothetical protein ROS217_22062 from Roseovarius sp. 217 %28same COG domain%29%3B bad Swissprot hit to Magnesium-chelatase subunit H %28Mg-protoporphyrin IX chelatase subunit H%29 from Rhodobacter sphaeroides 2.4.1: This family contains a domain common to the cobN protein and to magn;Dbxref=Genbank:YP_001531517.1,GeneID:5711635;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531517.1;transl_table=11
NC_009952.1	RefSeq	gene	171888	172247	.	+	.	ID=gene166;Name=Dshi_0168;Dbxref=GeneID:5711636;gbkey=Gene;locus_tag=Dshi_0168
NC_009952.1	RefSeq	CDS	171888	172247	.	+	0	ID=cds165;Name=YP_001531518.1;Parent=gene166;Note=KEGG: rde:RD1_1333 response regulator%2C putative%3B COG2204 Response regulator containing CheY-like receiver%2C AAA-type ATPase%2C and DNA-binding domains;Dbxref=Genbank:YP_001531518.1,GeneID:5711636;gbkey=CDS;product=response regulator receiver protein;protein_id=YP_001531518.1;transl_table=11
NC_009952.1	RefSeq	gene	172349	173338	.	-	.	ID=gene167;Name=Dshi_0169;Dbxref=GeneID:5711637;gbkey=Gene;locus_tag=Dshi_0169
NC_009952.1	RefSeq	CDS	172349	173338	.	-	0	ID=cds166;Name=YP_001531519.1;Parent=gene167;Note=KEGG: jan:Jann_0368 putative glutathione S-transferase;Dbxref=Genbank:YP_001531519.1,GeneID:5711637;gbkey=CDS;product=putative glutathione S-transferase;protein_id=YP_001531519.1;transl_table=11
NC_009952.1	RefSeq	gene	173674	173919	.	+	.	ID=gene168;Name=Dshi_0170;Dbxref=GeneID:5711638;gbkey=Gene;locus_tag=Dshi_0170
NC_009952.1	RefSeq	CDS	173674	173919	.	+	0	ID=cds167;Name=YP_001531520.1;Parent=gene168;Note=no significant BLAST hits%2C bad GC frame plot%2C no conserved domains detected;Dbxref=Genbank:YP_001531520.1,GeneID:5711638;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531520.1;transl_table=11
NC_009952.1	RefSeq	gene	173916	175166	.	+	.	ID=gene169;Name=cbiX2;Dbxref=GeneID:5711639;gbkey=Gene;gene=cbiX2;locus_tag=Dshi_0171
NC_009952.1	RefSeq	CDS	173916	175166	.	+	0	ID=cds168;Name=YP_001531521.1;Parent=gene169;Note=PFAM: cobalamin %28vitamin B12%29 biosynthesis CbiX protein KEGG: sye:Syncc9902_0843 hypothetical protein%3B swissprot to Sirohydrochlorin cobaltochelatase %28CbiXL%29 from Bacillus megaterium;Dbxref=Genbank:YP_001531521.1,GeneID:5711639;gbkey=CDS;gene=cbiX2;product=sirohydrochlorin cobaltochelatase;protein_id=YP_001531521.1;transl_table=11
NC_009952.1	RefSeq	gene	175166	176704	.	+	.	ID=gene170;Name=cobH;Dbxref=GeneID:5711640;gbkey=Gene;gene=cobH;locus_tag=Dshi_0172
NC_009952.1	RefSeq	CDS	175166	176704	.	+	0	ID=cds169;Name=YP_001531522.1;Parent=gene170;Note=PFAM: Precorrin-8X methylmutase CbiC%2FCobH KEGG: bvi:Bcep1808_1609 precorrin-8X methylmutase%3B alternative gene name: cbiC;Dbxref=Genbank:YP_001531522.1,GeneID:5711640;gbkey=CDS;gene=cobH;product=precorrin-8X methylmutase;protein_id=YP_001531522.1;transl_table=11
NC_009952.1	RefSeq	gene	176787	177989	.	+	.	ID=gene171;Name=cobL;Dbxref=GeneID:5711641;gbkey=Gene;gene=cobL;locus_tag=Dshi_0173
NC_009952.1	RefSeq	CDS	176787	177989	.	+	0	ID=cds170;Name=YP_001531523.1;Parent=gene171;Note=KEGG: ava:Ava_3558 uroporphyrin-III C%2Ftetrapyrrole %28corrin%2Fporphyrin%29 methyltransferase TIGRFAM: precorrin-6y C5%2C15-methyltransferase %28decarboxylating%29%2C CbiE subunit%3B precorrin-6Y C5%2C15-methyltransferase %28decarboxylating%29%2C CbiT subunit PFAM: Uroporphyrin-III C%2Ftetrapyrrole %28Corrin%2FPorphyrin%29 methyltransferase;Dbxref=Genbank:YP_001531523.1,GeneID:5711641;gbkey=CDS;gene=cobL;product=decarboxylating precorrin-6Y C%285%2C15%29-methyltransferase;protein_id=YP_001531523.1;transl_table=11
NC_009952.1	RefSeq	gene	177986	178687	.	+	.	ID=gene172;Name=cobI;Dbxref=GeneID:5711642;gbkey=Gene;gene=cobI;locus_tag=Dshi_0174
NC_009952.1	RefSeq	CDS	177986	178687	.	+	0	ID=cds171;Name=YP_001531524.1;Parent=gene172;Note=TIGRFAM: precorrin-2 C20-methyltransferase PFAM: Uroporphyrin-III C%2Ftetrapyrrole %28Corrin%2FPorphyrin%29 methyltransferase KEGG: mag:amb0297 precorrin-2 methylase%3B alternative gene name: cbiL;Dbxref=Genbank:YP_001531524.1,GeneID:5711642;gbkey=CDS;gene=cobI;product=precorrin-2 C%2820%29-methyltransferase;protein_id=YP_001531524.1;transl_table=11
NC_009952.1	RefSeq	gene	178678	180483	.	+	.	ID=gene173;Name=cbiG;Dbxref=GeneID:5712100;gbkey=Gene;gene=cbiG;locus_tag=Dshi_0175
NC_009952.1	RefSeq	CDS	178678	180483	.	+	0	ID=cds172;Name=YP_001531525.1;Parent=gene173;Note=TIGRFAM: precorrin-3B C17-methyltransferase PFAM: Uroporphyrin-III C%2Ftetrapyrrole %28Corrin%2FPorphyrin%29 methyltransferase%3B cobalamin %28vitamin B12%29 biosynthesis CbiG protein KEGG: mag:amb0298 precorrin-3B methylase;Dbxref=Genbank:YP_001531525.1,GeneID:5712100;gbkey=CDS;gene=cbiG;product=precorrin-3B C%2817%29-methyltransferase;protein_id=YP_001531525.1;transl_table=11
NC_009952.1	RefSeq	gene	180607	181383	.	+	.	ID=gene174;Name=cobM;Dbxref=GeneID:5712101;gbkey=Gene;gene=cobM;locus_tag=Dshi_0176
NC_009952.1	RefSeq	CDS	180607	181383	.	+	0	ID=cds173;Name=YP_001531526.1;Parent=gene174;Note=TIGRFAM: precorrin-4 C11-methyltransferase PFAM: Uroporphyrin-III C%2Ftetrapyrrole %28Corrin%2FPorphyrin%29 methyltransferase KEGG: mag:amb0514 precorrin-4 methylase%2C anaerobic equivalent cbiF;Dbxref=Genbank:YP_001531526.1,GeneID:5712101;gbkey=CDS;gene=cobM;product=precorrin-4 C%2811%29-methyltransferase;protein_id=YP_001531526.1;transl_table=11
NC_009952.1	RefSeq	gene	181444	181797	.	+	.	ID=gene175;Name=Dshi_0177;Dbxref=GeneID:5712102;gbkey=Gene;locus_tag=Dshi_0177
NC_009952.1	RefSeq	CDS	181444	181797	.	+	0	ID=cds174;Name=YP_001531527.1;Parent=gene175;Note=KEGG: jan:Jann_0367 hypothetical protein%2C no significant swissprot%2C no IPR Scan results;Dbxref=Genbank:YP_001531527.1,GeneID:5712102;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531527.1;transl_table=11
NC_009952.1	RefSeq	gene	181801	182973	.	-	.	ID=gene176;Name=Dshi_0178;Dbxref=GeneID:5712103;gbkey=Gene;locus_tag=Dshi_0178
NC_009952.1	RefSeq	CDS	181801	182973	.	-	0	ID=cds175;Name=YP_001531528.1;Parent=gene176;Note=PFAM: aminotransferase class I and II KEGG: sit:TM1040_2581 aminotransferase%2C class I and II%3B middle swissprot to Putative aminotransferase B from Bacillus subtilis %28patB%29;Dbxref=Genbank:YP_001531528.1,GeneID:5712103;gbkey=CDS;product=class I%2FII aminotransferase;protein_id=YP_001531528.1;transl_table=11
NC_009952.1	RefSeq	gene	183047	183610	.	+	.	ID=gene177;Name=def1;Dbxref=GeneID:5712104;gbkey=Gene;gene=def1;locus_tag=Dshi_0179
NC_009952.1	RefSeq	CDS	183047	183610	.	+	0	ID=cds176;Name=YP_001531529.1;Parent=gene177;Note=KEGG: rsh:Rsph17029_2532 peptide deformylase TIGRFAM: peptide deformylase PFAM: formylmethionine deformylase;Dbxref=Genbank:YP_001531529.1,GeneID:5712104;gbkey=CDS;gene=def1;product=peptide deformylase;protein_id=YP_001531529.1;transl_table=11
NC_009952.1	RefSeq	gene	183683	184189	.	+	.	ID=gene178;Name=def2;Dbxref=GeneID:5712105;gbkey=Gene;gene=def2;locus_tag=Dshi_0180
NC_009952.1	RefSeq	CDS	183683	184189	.	+	0	ID=cds177;Name=YP_001531530.1;Parent=gene178;Note=TIGRFAM: peptide deformylase PFAM: formylmethionine deformylase KEGG: sit:TM1040_2578 formylmethionine deformylase%2C worse BLAST hits than Dshi_0179%2C but same product result;Dbxref=Genbank:YP_001531530.1,GeneID:5712105;gbkey=CDS;gene=def2;product=peptide deformylase;protein_id=YP_001531530.1;transl_table=11
NC_009952.1	RefSeq	gene	184186	185085	.	+	.	ID=gene179;Name=fmt;Dbxref=GeneID:5712106;gbkey=Gene;gene=fmt;locus_tag=Dshi_0181
NC_009952.1	RefSeq	CDS	184186	185085	.	+	0	ID=cds178;Name=YP_001531531.1;Parent=gene179;Note=TIGRFAM: methionyl-tRNA formyltransferase PFAM: formyl transferase domain protein KEGG: sil:SPO3216 methionyl-tRNA formyltransferase%3B high swissprot;Dbxref=Genbank:YP_001531531.1,GeneID:5712106;gbkey=CDS;gene=fmt;product=methionyl-tRNA formyltransferase;protein_id=YP_001531531.1;transl_table=11
NC_009952.1	RefSeq	gene	185190	185663	.	-	.	ID=gene180;Name=rnhA;Dbxref=GeneID:5712107;gbkey=Gene;gene=rnhA;locus_tag=Dshi_0182
NC_009952.1	RefSeq	CDS	185190	185663	.	-	0	ID=cds179;Name=YP_001531532.1;Parent=gene180;Note=An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids;Dbxref=Genbank:YP_001531532.1,GeneID:5712107;gbkey=CDS;gene=rnhA;product=ribonuclease H;protein_id=YP_001531532.1;transl_table=11
NC_009952.1	RefSeq	gene	185656	186255	.	-	.	ID=gene181;Name=rnhA;Dbxref=GeneID:5712108;gbkey=Gene;gene=rnhA;locus_tag=Dshi_0183
NC_009952.1	RefSeq	CDS	185656	186255	.	-	0	ID=cds180;Name=YP_001531533.1;Parent=gene181;Note=PFAM: Methyltransferase type 11%3B Methyltransferase type 12 KEGG: sil:SPO3211 hypothetical protein;Dbxref=Genbank:YP_001531533.1,GeneID:5712108;gbkey=CDS;product=type 11 methyltransferase;protein_id=YP_001531533.1;transl_table=11
NC_009952.1	RefSeq	gene	186252	186704	.	-	.	ID=gene182;Name=Dshi_0184;Dbxref=GeneID:5712109;gbkey=Gene;locus_tag=Dshi_0184
NC_009952.1	RefSeq	CDS	186252	186704	.	-	0	ID=cds181;Name=YP_001531534.1;Parent=gene182;Note=KEGG: rde:RD1_1353 hypothetical protein;Dbxref=Genbank:YP_001531534.1,GeneID:5712109;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531534.1;transl_table=11
NC_009952.1	RefSeq	gene	186744	187694	.	-	.	ID=gene183;Name=cdsA2;Dbxref=GeneID:5712110;gbkey=Gene;gene=cdsA2;locus_tag=Dshi_0185
NC_009952.1	RefSeq	CDS	186744	187694	.	-	0	ID=cds182;Name=YP_001531535.1;Parent=gene183;Note=PFAM: phosphatidate cytidylyltransferase KEGG: reu:Reut_B4016 phosphatidate cytidylyltransferase;Dbxref=Genbank:YP_001531535.1,GeneID:5712110;gbkey=CDS;gene=cdsA2;product=phosphatidate cytidylyltransferase;protein_id=YP_001531535.1;transl_table=11
NC_009952.1	RefSeq	gene	187691	188344	.	-	.	ID=gene184;Name=plsC;Dbxref=GeneID:5712111;gbkey=Gene;gene=plsC;locus_tag=Dshi_0186
NC_009952.1	RefSeq	CDS	187691	188344	.	-	0	ID=cds183;Name=YP_001531536.1;Parent=gene184;Note=PFAM: phospholipid%2Fglycerol acyltransferase KEGG: reh:H16_A2089 1-acyl-sn-glycerol-3-phosphate acyltransferase;Dbxref=Genbank:YP_001531536.1,GeneID:5712111;gbkey=CDS;gene=plsC;product=phospholipid%2Fglycerol acyltransferase;protein_id=YP_001531536.1;transl_table=11
NC_009952.1	RefSeq	gene	188367	188981	.	-	.	ID=gene185;Name=Dshi_0187;Dbxref=GeneID:5712112;gbkey=Gene;locus_tag=Dshi_0187
NC_009952.1	RefSeq	CDS	188367	188981	.	-	0	ID=cds184;Name=YP_001531537.1;Parent=gene185;Note=PFAM: Lysine exporter protein %28LYSE%2FYGGA%29 KEGG: jan:Jann_0505 lysine exporter protein %28LysE%2FYggA%29%3B COG1280 putative threonine efflux protein%3B Ref hit to Lysine exporter protein %28LYSE%2FYGGA%29 from Jannaschia sp. CCS1%2C also swissprot to Homoserine%2Fhomoserine lactone efflux protein from Escherichia coli K12;Dbxref=Genbank:YP_001531537.1,GeneID:5712112;gbkey=CDS;product=amino-acid exporter protein;protein_id=YP_001531537.1;transl_table=11
NC_009952.1	RefSeq	gene	189644	190600	.	-	.	ID=gene186;Name=ispH;Dbxref=GeneID:5712113;gbkey=Gene;gene=ispH;locus_tag=Dshi_0188
NC_009952.1	RefSeq	CDS	189644	190600	.	-	0	ID=cds185;Name=YP_001531538.1;Parent=gene186;Note=catalyzes the conversion of 1-hydroxy-2-methyl-2-%28E%29-butenyl 4-diphosphate into isopentenyl diphosphate %28IPP%29 and dimethylallyl diphosphate %28DMAPP%29%3B functions in the nonmevalonate isoprenoid biosynthesis pathway;Dbxref=Genbank:YP_001531538.1,GeneID:5712113;gbkey=CDS;gene=ispH;product=4-hydroxy-3-methylbut-2-enyl diphosphate reductase;protein_id=YP_001531538.1;transl_table=11
NC_009952.1	RefSeq	gene	190754	191188	.	+	.	ID=gene187;Name=Dshi_0189;Dbxref=GeneID:5712114;gbkey=Gene;locus_tag=Dshi_0189
NC_009952.1	RefSeq	CDS	190754	191188	.	+	0	ID=cds186;Name=YP_001531539.1;Parent=gene187;Note=PFAM: cytochrome c class I KEGG: rsh:Rsph17029_3996 cytochrome c%2C class I%3B COG2863 Cytochrome c553%3B just middle Ref hits to probable c-type cytochrome from Roseovarius sp. HTCC2601%3B good RBS site AGGAGGAT;Dbxref=Genbank:YP_001531539.1,GeneID:5712114;gbkey=CDS;product=putative cytochrome c class I;protein_id=YP_001531539.1;transl_table=11
NC_009952.1	RefSeq	gene	191192	191707	.	-	.	ID=gene188;Name=Dshi_0190;Dbxref=GeneID:5712115;gbkey=Gene;locus_tag=Dshi_0190
NC_009952.1	RefSeq	CDS	191192	191707	.	-	0	ID=cds187;Name=YP_001531540.1;Parent=gene188;Note=KEGG: pmy:Pmen_0684 membrane protein-like protein%2C middle Ref hits;Dbxref=Genbank:YP_001531540.1,GeneID:5712115;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531540.1;transl_table=11
NC_009952.1	RefSeq	gene	191718	192290	.	-	.	ID=gene189;Name=Dshi_0191;Dbxref=GeneID:5712116;gbkey=Gene;locus_tag=Dshi_0191
NC_009952.1	RefSeq	CDS	191718	192290	.	-	0	ID=cds188;Name=YP_001531541.1;Parent=gene189;Note=PFAM: protein of unknown function DUF88 KEGG: rsq:Rsph17025_2579 protein of unknown function DUF88;Dbxref=Genbank:YP_001531541.1,GeneID:5712116;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531541.1;transl_table=11
NC_009952.1	RefSeq	gene	192409	192978	.	+	.	ID=gene190;Name=hppk;Dbxref=GeneID:5712117;gbkey=Gene;gene=hppk;locus_tag=Dshi_0192
NC_009952.1	RefSeq	CDS	192409	192978	.	+	0	ID=cds189;Name=YP_001531542.1;Parent=gene190;Note=TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK KEGG: sil:SPO3205 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase;Dbxref=Genbank:YP_001531542.1,GeneID:5712117;gbkey=CDS;gene=hppk;product=2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase;protein_id=YP_001531542.1;transl_table=11
NC_009952.1	RefSeq	gene	193056	193412	.	+	.	ID=gene191;Name=rpoZ;Dbxref=GeneID:5712118;gbkey=Gene;gene=rpoZ;locus_tag=Dshi_0193
NC_009952.1	RefSeq	CDS	193056	193412	.	+	0	ID=cds190;Name=YP_001531543.1;Parent=gene191;Note=Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta%27 subunit thereby facilitating its interaction with the beta and alpha subunits;Dbxref=Genbank:YP_001531543.1,GeneID:5712118;gbkey=CDS;gene=rpoZ;product=DNA-directed RNA polymerase subunit omega;protein_id=YP_001531543.1;transl_table=11
NC_009952.1	RefSeq	gene	193417	195561	.	+	.	ID=gene192;Name=relA;Dbxref=GeneID:5712119;gbkey=Gene;gene=relA;locus_tag=Dshi_0194
NC_009952.1	RefSeq	CDS	193417	195561	.	+	0	ID=cds191;Name=YP_001531544.1;Parent=gene192;Note=KEGG: rsq:Rsph17025_2576 %28p%29ppGpp synthetase I%2C SpoT%2FRelA TIGRFAM: RelA%2FSpoT family protein PFAM: TGS domain protein%3B metal-dependent phosphohydrolase HD sub domain%3B RelA%2FSpoT domain protein SMART: metal-dependent phosphohydrolase HD region%3B ppGpp synthetase I%3B ATP:GTP 3-pyrophosphotransferase;Dbxref=Genbank:YP_001531544.1,GeneID:5712119;gbkey=CDS;gene=relA;product=GTP pyrophosphokinase;protein_id=YP_001531544.1;transl_table=11
NC_009952.1	RefSeq	gene	195599	196255	.	+	.	ID=gene193;Name=Dshi_0195;Dbxref=GeneID:5712120;gbkey=Gene;locus_tag=Dshi_0195
NC_009952.1	RefSeq	CDS	195599	196255	.	+	0	ID=cds192;Name=YP_001531545.1;Parent=gene193;Note=KEGG: sil:SPO3202 hypothetical protein;Dbxref=Genbank:YP_001531545.1,GeneID:5712120;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531545.1;transl_table=11
NC_009952.1	RefSeq	gene	196281	197045	.	+	.	ID=gene194;Name=pdxJ;Dbxref=GeneID:5712121;gbkey=Gene;gene=pdxJ;locus_tag=Dshi_0196
NC_009952.1	RefSeq	CDS	196281	197045	.	+	0	ID=cds193;Name=YP_001531546.1;Parent=gene194;Note=involved in the de novo synthesis of pyridoxine %28Vitamin B6%29;Dbxref=Genbank:YP_001531546.1,GeneID:5712121;gbkey=CDS;gene=pdxJ;product=pyridoxine 5%27-phosphate synthase;protein_id=YP_001531546.1;transl_table=11
NC_009952.1	RefSeq	gene	197042	197704	.	+	.	ID=gene195;Name=pdxJ;Dbxref=GeneID:5712122;gbkey=Gene;gene=pdxJ;locus_tag=Dshi_0197
NC_009952.1	RefSeq	CDS	197042	197704	.	+	0	ID=cds194;Name=YP_001531547.1;Parent=gene195;Note=KEGG: sit:TM1040_1321 hypothetical protein%2C no swissprot%2C no conserved domains;Dbxref=Genbank:YP_001531547.1,GeneID:5712122;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531547.1;transl_table=11
NC_009952.1	RefSeq	gene	197844	198263	.	+	.	ID=gene196;Name=acpS;Dbxref=GeneID:5712123;gbkey=Gene;gene=acpS;locus_tag=Dshi_0198
NC_009952.1	RefSeq	CDS	197844	198263	.	+	0	ID=cds195;Name=YP_001531548.1;Parent=gene196;Note=Catalyzes the formation of holo-ACP%2C which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids;Dbxref=Genbank:YP_001531548.1,GeneID:5712123;gbkey=CDS;gene=acpS;product=4%27-phosphopantetheinyl transferase;protein_id=YP_001531548.1;transl_table=11
NC_009952.1	RefSeq	gene	198319	199104	.	+	.	ID=gene197;Name=lepB;Dbxref=GeneID:5712124;gbkey=Gene;gene=lepB;locus_tag=Dshi_0199
NC_009952.1	RefSeq	CDS	198319	199104	.	+	0	ID=cds196;Name=YP_001531549.1;Parent=gene197;Note=KEGG: rsq:Rsph17025_2572 signal peptidase I TIGRFAM: signal peptidase I PFAM: peptidase S24 and S26 domain protein;Dbxref=Genbank:YP_001531549.1,GeneID:5712124;gbkey=CDS;gene=lepB;product=signal peptidase I;protein_id=YP_001531549.1;transl_table=11
NC_009952.1	RefSeq	gene	199101	199790	.	+	.	ID=gene198;Name=rnc;Dbxref=GeneID:5712125;gbkey=Gene;gene=rnc;locus_tag=Dshi_0200
NC_009952.1	RefSeq	CDS	199101	199790	.	+	0	ID=cds197;Name=YP_001531550.1;Parent=gene198;Note=PFAM: ribonuclease III%3B double-stranded RNA binding domain protein KEGG: rde:RD1_1366 ribonuclease III;Dbxref=Genbank:YP_001531550.1,GeneID:5712125;gbkey=CDS;gene=rnc;product=ribonuclease III;protein_id=YP_001531550.1;transl_table=11
NC_009952.1	RefSeq	gene	199783	200709	.	+	.	ID=gene199;Name=era;Dbxref=GeneID:5712126;gbkey=Gene;gene=era;locus_tag=Dshi_0201
NC_009952.1	RefSeq	CDS	199783	200709	.	+	0	ID=cds198;Name=YP_001531551.1;Parent=gene199;Note=Era%3B Escherichia coli Ras-like protein%3B Bex%3B Bacillus Era-complementing segment%3B essential protein in Escherichia coli that is involved in many cellular processes%3B GTPase%3B binds the cell membrane through apparent C-terminal domain%3B mutants are arrested during the cell cycle%3B Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome;Dbxref=Genbank:YP_001531551.1,GeneID:5712126;gbkey=CDS;gene=era;product=GTP-binding protein Era;protein_id=YP_001531551.1;transl_table=11
NC_009952.1	RefSeq	gene	200713	201045	.	+	.	ID=gene200;Name=Dshi_0202;Dbxref=GeneID:5712127;gbkey=Gene;locus_tag=Dshi_0202
NC_009952.1	RefSeq	CDS	200713	201045	.	+	0	ID=cds199;Name=YP_001531552.1;Parent=gene200;Note=PFAM: protein of unknown function DUF1491 KEGG: sil:SPO0690 hypothetical protein;Dbxref=Genbank:YP_001531552.1,GeneID:5712127;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531552.1;transl_table=11
NC_009952.1	RefSeq	gene	201114	201839	.	+	.	ID=gene201;Name=recO;Dbxref=GeneID:5712128;gbkey=Gene;gene=recO;locus_tag=Dshi_0203
NC_009952.1	RefSeq	CDS	201114	201839	.	+	0	ID=cds200;Name=YP_001531553.1;Parent=gene201;Note=involved in DNA repair and RecFOR pathway recombination%3B RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA;Dbxref=Genbank:YP_001531553.1,GeneID:5712128;gbkey=CDS;gene=recO;product=DNA repair protein RecO;protein_id=YP_001531553.1;transl_table=11
NC_009952.1	RefSeq	gene	201901	203595	.	-	.	ID=gene202;Name=mmgC;Dbxref=GeneID:5712129;gbkey=Gene;gene=mmgC;locus_tag=Dshi_0204
NC_009952.1	RefSeq	CDS	201901	203595	.	-	0	ID=cds201;Name=YP_001531554.1;Parent=gene202;Note=PFAM: acyl-CoA dehydrogenase domain protein%3B Acyl-CoA dehydrogenase type 2 domain KEGG: rde:RD1_1372 isobutyryl-CoA dehydrogenase;Dbxref=Genbank:YP_001531554.1,GeneID:5712129;gbkey=CDS;gene=mmgC;product=acyl-CoA dehydrogenase;protein_id=YP_001531554.1;transl_table=11
NC_009952.1	RefSeq	gene	203871	204635	.	+	.	ID=gene203;Name=Dshi_0205;Dbxref=GeneID:5712130;gbkey=Gene;locus_tag=Dshi_0205
NC_009952.1	RefSeq	CDS	203871	204635	.	+	0	ID=cds202;Name=YP_001531555.1;Parent=gene203;Note=PFAM: protein of unknown function DUF81 KEGG: sit:TM1040_2445 protein of unknown function DUF81%3B no significant swissprot;Dbxref=Genbank:YP_001531555.1,GeneID:5712130;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531555.1;transl_table=11
NC_009952.1	RefSeq	gene	204628	205515	.	-	.	ID=gene204;Name=Dshi_0206;Dbxref=GeneID:5712131;gbkey=Gene;locus_tag=Dshi_0206
NC_009952.1	RefSeq	CDS	204628	205515	.	-	0	ID=cds203;Name=YP_001531556.1;Parent=gene204;Note=KEGG: rde:RD1_1384 hypothetical protein%2C no significant swissprot%2C but conserved domains and good RBS site AGGAT;Dbxref=Genbank:YP_001531556.1,GeneID:5712131;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531556.1;transl_table=11
NC_009952.1	RefSeq	gene	205596	205865	.	-	.	ID=gene205;Name=ptsH;Dbxref=GeneID:5712132;gbkey=Gene;gene=ptsH;locus_tag=Dshi_0207
NC_009952.1	RefSeq	CDS	205596	205865	.	-	0	ID=cds204;Name=YP_001531557.1;Parent=gene205;Note=TIGRFAM: phosphocarrier%2C HPr family PFAM: phosphocarrier HPr protein KEGG: sit:TM1040_2436 phosphotransferase system%2C HPr%3B phosphocarrier protein HPr;Dbxref=Genbank:YP_001531557.1,GeneID:5712132;gbkey=CDS;gene=ptsH;product=phosphotransferase system;protein_id=YP_001531557.1;transl_table=11
NC_009952.1	RefSeq	gene	205876	206265	.	-	.	ID=gene206;Name=ptsL;Dbxref=GeneID:5712133;gbkey=Gene;gene=ptsL;locus_tag=Dshi_0208
NC_009952.1	RefSeq	CDS	205876	206265	.	-	0	ID=cds205;Name=YP_001531558.1;Parent=gene206;Note=PFAM: PTS system fructose subfamily IIA component KEGG: sil:SPO0714 PTS system IIA component%2C Man family%3B Man family protein;Dbxref=Genbank:YP_001531558.1,GeneID:5712133;gbkey=CDS;gene=ptsL;product=PTS system transporter subunit IIA;protein_id=YP_001531558.1;transl_table=11
NC_009952.1	RefSeq	gene	206303	207205	.	-	.	ID=gene207;Name=Dshi_0209;Dbxref=GeneID:5712134;gbkey=Gene;locus_tag=Dshi_0209
NC_009952.1	RefSeq	CDS	206303	207205	.	-	0	ID=cds206;Name=YP_001531559.1;Parent=gene207;Note=PFAM: conserved hypothetical protein KEGG: rsh:Rsph17029_0317 uncharacterised P-loop ATPase protein UPF0042%3B high swissprot%2C part of the PTS system in gene neighborhood%3F;Dbxref=Genbank:YP_001531559.1,GeneID:5712134;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531559.1;transl_table=11
NC_009952.1	RefSeq	gene	207218	207655	.	-	.	ID=gene208;Name=hprK;Dbxref=GeneID:5712135;gbkey=Gene;gene=hprK;locus_tag=Dshi_0210
NC_009952.1	RefSeq	CDS	207218	207655	.	-	0	ID=cds207;Name=YP_001531560.1;Parent=gene208;Note=KEGG: sil:SPO0712 HPr serine kinase%2Fphosphatase domain protein;Dbxref=Genbank:YP_001531560.1,GeneID:5712135;gbkey=CDS;gene=hprK;product=HPr kinase%2Fphosphorylase;protein_id=YP_001531560.1;transl_table=11
NC_009952.1	RefSeq	gene	207658	209376	.	-	.	ID=gene209;Name=Dshi_0211;Dbxref=GeneID:5712136;gbkey=Gene;locus_tag=Dshi_0211
NC_009952.1	RefSeq	CDS	207658	209376	.	-	0	ID=cds208;Name=YP_001531561.1;Parent=gene209;Note=PFAM: ATP-binding region ATPase domain protein%3B histidine kinase HAMP region domain protein%3B histidine kinase A domain protein KEGG: rsh:Rsph17029_0315 histidine kinase;Dbxref=Genbank:YP_001531561.1,GeneID:5712136;gbkey=CDS;product=integral membrane sensor signal transduction histidine kinase;protein_id=YP_001531561.1;transl_table=11
NC_009952.1	RefSeq	gene	209373	210074	.	-	.	ID=gene210;Name=Dshi_0212;Dbxref=GeneID:5712137;gbkey=Gene;locus_tag=Dshi_0212
NC_009952.1	RefSeq	CDS	209373	210074	.	-	0	ID=cds209;Name=YP_001531562.1;Parent=gene210;Note=PFAM: response regulator receiver%3B transcriptional regulator domain protein KEGG: sit:TM1040_2441 two component transcriptional regulator%2C winged helix family%3B winged helix family;Dbxref=Genbank:YP_001531562.1,GeneID:5712137;gbkey=CDS;product=two component transcriptional regulator;protein_id=YP_001531562.1;transl_table=11
NC_009952.1	RefSeq	gene	210410	212008	.	+	.	ID=gene211;Name=pckA;Dbxref=GeneID:5712138;gbkey=Gene;gene=pckA;locus_tag=Dshi_0213
NC_009952.1	RefSeq	CDS	210410	212008	.	+	0	ID=cds210;Name=YP_001531563.1;Parent=gene211;Note=PEP carboxykinase%3B PEP carboxylase%3B PEPCK%3B catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP;Dbxref=Genbank:YP_001531563.1,GeneID:5712138;gbkey=CDS;gene=pckA;product=phosphoenolpyruvate carboxykinase;protein_id=YP_001531563.1;transl_table=11
NC_009952.1	RefSeq	gene	212131	213006	.	-	.	ID=gene212;Name=hbdA;Dbxref=GeneID:5712139;gbkey=Gene;gene=hbdA;locus_tag=Dshi_0214
NC_009952.1	RefSeq	CDS	212131	213006	.	-	0	ID=cds211;Name=YP_001531564.1;Parent=gene212;Note=converts %28S%29-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA;Dbxref=Genbank:YP_001531564.1,GeneID:5712139;gbkey=CDS;gene=hbdA;product=3-hydroxybutyryl-CoA dehydrogenase;protein_id=YP_001531564.1;transl_table=11
NC_009952.1	RefSeq	gene	213167	214024	.	+	.	ID=gene213;Name=Dshi_0215;Dbxref=GeneID:5712140;gbkey=Gene;locus_tag=Dshi_0215
NC_009952.1	RefSeq	CDS	213167	214024	.	+	0	ID=cds212;Name=YP_001531565.1;Parent=gene213;Note=KEGG: rde:RD1_1386 hypothetical protein%3B no significant swissprot%3B no IPR Scan results;Dbxref=Genbank:YP_001531565.1,GeneID:5712140;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531565.1;transl_table=11
NC_009952.1	RefSeq	gene	214091	215017	.	-	.	ID=gene214;Name=eftA;Dbxref=GeneID:5712141;gbkey=Gene;gene=eftA;locus_tag=Dshi_0216
NC_009952.1	RefSeq	CDS	214091	215017	.	-	0	ID=cds213;Name=YP_001531566.1;Parent=gene214;Note=PFAM: Electron transfer flavoprotein alpha%2Fbeta-subunit %3B Electron transfer flavoprotein alpha subunit KEGG: rde:RD1_1387 electron transfer flavoprotein%2C alpha subunit%2C high swissprot;Dbxref=Genbank:YP_001531566.1,GeneID:5712141;gbkey=CDS;gene=eftA;product=electron transfer flavoprotein subunit alpha;protein_id=YP_001531566.1;transl_table=11
NC_009952.1	RefSeq	gene	215017	215775	.	-	.	ID=gene215;Name=eftB;Dbxref=GeneID:5712142;gbkey=Gene;gene=eftB;locus_tag=Dshi_0217
NC_009952.1	RefSeq	CDS	215017	215775	.	-	0	ID=cds214;Name=YP_001531567.1;Parent=gene215;Note=PFAM: Electron transfer flavoprotein alpha%2Fbeta-subunit KEGG: sil:SPO0720 electron transfer flavoprotein%2C beta subunit%3B high swissprot to Electron transfer flavoprotein subunit beta from Paracoccus denitrificans;Dbxref=Genbank:YP_001531567.1,GeneID:5712142;gbkey=CDS;gene=eftB;product=electron transfer flavoprotein subunit beta;protein_id=YP_001531567.1;transl_table=11
NC_009952.1	RefSeq	gene	216003	216575	.	-	.	ID=gene216;Name=Dshi_0218;Dbxref=GeneID:5712143;gbkey=Gene;locus_tag=Dshi_0218
NC_009952.1	RefSeq	CDS	216003	216575	.	-	0	ID=cds215;Name=YP_001531568.1;Parent=gene216;Note=TIGRFAM: ATP--cobalamin adenosyltransferase PFAM: cobalamin adenosyltransferase KEGG: rde:RD1_1389 cob%28I%29alamin adenosyltransferase%2C putative;Dbxref=Genbank:YP_001531568.1,GeneID:5712143;gbkey=CDS;product=putative ATP--cobalamin adenosyltransferase;protein_id=YP_001531568.1;transl_table=11
NC_009952.1	RefSeq	gene	216579	216794	.	-	.	ID=gene217;Name=Dshi_0219;Dbxref=GeneID:5712144;gbkey=Gene;locus_tag=Dshi_0219
NC_009952.1	RefSeq	CDS	216579	216794	.	-	0	ID=cds216;Name=YP_001531569.1;Parent=gene217;Note=KEGG: rsq:Rsph17025_2554 hypothetical protein%3B no significant swissprot%3B no conserved domains;Dbxref=Genbank:YP_001531569.1,GeneID:5712144;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531569.1;transl_table=11
NC_009952.1	RefSeq	gene	216879	217712	.	-	.	ID=gene218;Name=Dshi_0220;Dbxref=GeneID:5712145;gbkey=Gene;locus_tag=Dshi_0220
NC_009952.1	RefSeq	CDS	216879	217712	.	-	0	ID=cds217;Name=YP_001531570.1;Parent=gene218;Note=PFAM: short-chain dehydrogenase%2Freductase SDR KEGG: rde:RD1_1391 oxidoreductase%2C putative;Dbxref=Genbank:YP_001531570.1,GeneID:5712145;gbkey=CDS;product=putative oxidoreductase NAD-%2FNADP-dependent;protein_id=YP_001531570.1;transl_table=11
NC_009952.1	RefSeq	gene	217806	220139	.	+	.	ID=gene219;Name=parC;Dbxref=GeneID:5712146;gbkey=Gene;gene=parC;locus_tag=Dshi_0221
NC_009952.1	RefSeq	CDS	217806	220139	.	+	0	ID=cds218;Name=YP_001531571.1;Parent=gene219;Note=decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling;Dbxref=Genbank:YP_001531571.1,GeneID:5712146;gbkey=CDS;gene=parC;product=DNA topoisomerase IV subunit A;protein_id=YP_001531571.1;transl_table=11
NC_009952.1	RefSeq	gene	220158	220832	.	+	.	ID=gene220;Name=Dshi_0222;Dbxref=GeneID:5712147;gbkey=Gene;locus_tag=Dshi_0222
NC_009952.1	RefSeq	CDS	220158	220832	.	+	0	ID=cds219;Name=YP_001531572.1;Parent=gene220;Note=KEGG: rsh:Rsph17029_0330 hypothetical protein%2C no significant swissprot;Dbxref=Genbank:YP_001531572.1,GeneID:5712147;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531572.1;transl_table=11
NC_009952.1	RefSeq	gene	220923	222098	.	+	.	ID=gene221;Name=tufA2;Dbxref=GeneID:5712148;gbkey=Gene;gene=tufA2;locus_tag=Dshi_0223
NC_009952.1	RefSeq	CDS	220923	222098	.	+	0	ID=cds220;Name=YP_001531573.1;Parent=gene221;Note=EF-Tu%3B promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis%3B when the tRNA anticodon matches the mRNA codon%2C GTP hydrolysis results%3B the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts%3B many prokaryotes have two copies of the gene encoding EF-Tu;Dbxref=Genbank:YP_001531573.1,GeneID:5712148;gbkey=CDS;gene=tufA2;product=elongation factor Tu;protein_id=YP_001531573.1;transl_table=11
NC_009952.1	RefSeq	gene	222170	223045	.	-	.	ID=gene222;Name=Dshi_0224;Dbxref=GeneID:5712149;gbkey=Gene;locus_tag=Dshi_0224
NC_009952.1	RefSeq	CDS	222170	223045	.	-	0	ID=cds221;Name=YP_001531574.1;Parent=gene222;Note=bad Ref ZP hit to methyltransferase FkbM from Lyngbya sp. PCC 8106%2C no significant swissprot hit%2C conserved domain related to S-adenosyl-L-methionine-dependent methyltransferases;Dbxref=Genbank:YP_001531574.1,GeneID:5712149;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531574.1;transl_table=11
NC_009952.1	RefSeq	gene	223158	223233	.	+	.	ID=gene223;Name=Dshi_6002;Dbxref=GeneID:5712150;gbkey=Gene;locus_tag=Dshi_6002
NC_009952.1	RefSeq	tRNA	223158	223233	.	+	.	ID=rna1;Parent=gene223;Dbxref=GeneID:5712150;codons=15;gbkey=tRNA;product=tRNA-Trp
NC_009952.1	RefSeq	exon	223158	223233	.	+	.	ID=id2;Parent=rna1;Dbxref=GeneID:5712150;codons=15;gbkey=tRNA;product=tRNA-Trp
NC_009952.1	RefSeq	gene	223884	224186	.	+	.	ID=gene224;Name=Dshi_0225;Dbxref=GeneID:5712151;gbkey=Gene;locus_tag=Dshi_0225
NC_009952.1	RefSeq	CDS	223884	224186	.	+	0	ID=cds222;Name=YP_001531575.1;Parent=gene224;Note=KEGG: pde:Pden_3026 hypothetical protein%2C no swissprot%2C bad Ref hits%2C no conserved domains detected;Dbxref=Genbank:YP_001531575.1,GeneID:5712151;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531575.1;transl_table=11
NC_009952.1	RefSeq	gene	224310	224642	.	-	.	ID=gene225;Name=Dshi_0226;Dbxref=GeneID:5712152;gbkey=Gene;locus_tag=Dshi_0226
NC_009952.1	RefSeq	CDS	224310	224642	.	-	0	ID=cds223;Name=YP_001531576.1;Parent=gene225;Note=PFAM: protein of unknown function DUF1244 KEGG: sil:SPO3602 hypothetical protein%3B no significant swissprot hit;Dbxref=Genbank:YP_001531576.1,GeneID:5712152;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531576.1;transl_table=11
NC_009952.1	RefSeq	gene	224639	225388	.	-	.	ID=gene226;Name=Dshi_0227;Dbxref=GeneID:5712153;gbkey=Gene;locus_tag=Dshi_0227
NC_009952.1	RefSeq	CDS	224639	225388	.	-	0	ID=cds224;Name=YP_001531577.1;Parent=gene226;Note=PFAM: N-formylglutamate amidohydrolase KEGG: jan:Jann_0446 N-formylglutamate amidohydrolase%3B high Ref hit%2C but no significant swissprot hit;Dbxref=Genbank:YP_001531577.1,GeneID:5712153;gbkey=CDS;product=N-formylglutamate amidohydrolase;protein_id=YP_001531577.1;transl_table=11
NC_009952.1	RefSeq	gene	225543	226991	.	+	.	ID=gene227;Name=pykA;Dbxref=GeneID:5712154;gbkey=Gene;gene=pykA;locus_tag=Dshi_0228
NC_009952.1	RefSeq	CDS	225543	226991	.	+	0	ID=cds225;Name=YP_001531578.1;Parent=gene227;Note=KEGG: rsp:RSP_1766 pyruvate kinase TIGRFAM: pyruvate kinase PFAM: Pyruvate kinase barrel%3B Pyruvate kinase alpha%2Fbeta%3B high swissprot;Dbxref=Genbank:YP_001531578.1,GeneID:5712154;gbkey=CDS;gene=pykA;product=pyruvate kinase;protein_id=YP_001531578.1;transl_table=11
NC_009952.1	RefSeq	gene	226996	227220	.	+	.	ID=gene228;Name=Dshi_0229;Dbxref=GeneID:5712155;gbkey=Gene;locus_tag=Dshi_0229
NC_009952.1	RefSeq	CDS	226996	227220	.	+	0	ID=cds226;Name=YP_001531579.1;Parent=gene228;Note=bad BLAST hits%2C best swissprot to Prolyl-tRNA synthetase from Haemophilus ducreyi%2C but very unsure%3B no conserved domains detected;Dbxref=Genbank:YP_001531579.1,GeneID:5712155;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531579.1;transl_table=11
NC_009952.1	RefSeq	gene	227567	227767	.	+	.	ID=gene229;Name=rpmI;Dbxref=GeneID:5712156;gbkey=Gene;gene=rpmI;locus_tag=Dshi_0230
NC_009952.1	RefSeq	CDS	227567	227767	.	+	0	ID=cds227;Name=YP_001531580.1;Parent=gene229;Note=PFAM: ribosomal protein L35 KEGG: sil:SPO3599 ribosomal protein L35%3B high swissprot;Dbxref=Genbank:YP_001531580.1,GeneID:5712156;gbkey=CDS;gene=rpmI;product=50S ribosomal protein L35;protein_id=YP_001531580.1;transl_table=11
NC_009952.1	RefSeq	gene	227780	228145	.	+	.	ID=gene230;Name=rplT;Dbxref=GeneID:5712157;gbkey=Gene;gene=rplT;locus_tag=Dshi_0231
NC_009952.1	RefSeq	CDS	227780	228145	.	+	0	ID=cds228;Name=YP_001531581.1;Parent=gene230;Note=binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit;Dbxref=Genbank:YP_001531581.1,GeneID:5712157;gbkey=CDS;gene=rplT;product=50S ribosomal protein L20;protein_id=YP_001531581.1;transl_table=11
NC_009952.1	RefSeq	gene	228403	229473	.	+	.	ID=gene231;Name=Dshi_0232;Dbxref=GeneID:5712158;gbkey=Gene;locus_tag=Dshi_0232
NC_009952.1	RefSeq	CDS	228403	229473	.	+	0	ID=cds229;Name=YP_001531582.1;Parent=gene231;Note=KEGG: sil:SPO2161 hypothetical protein%3B no significant swissprot%2C best Ref ZP hit to type I secretion target repeat protein from Roseovarius sp. 217%3B Hedgehog hintN domain detected;Dbxref=Genbank:YP_001531582.1,GeneID:5712158;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531582.1;transl_table=11
NC_009952.1	RefSeq	gene	229629	231512	.	+	.	ID=gene232;Name=Dshi_0233;Dbxref=GeneID:5712159;gbkey=Gene;locus_tag=Dshi_0233
NC_009952.1	RefSeq	CDS	229629	231512	.	+	0	ID=cds230;Name=YP_001531583.1;Parent=gene232;Note=PFAM: Citrate transporter KEGG: mgm:Mmc1_1728 citrate transporter%3B best Ref ZP hit to sulfur deprivation response regulator from Rhodobacterales bacterium HTCC2150%2C best swissprot toUncharacterized transporter sll0640 from Synechocystis sp. PCC 6803%3B CitMHS domain detected %28citrate transporter%29;Dbxref=Genbank:YP_001531583.1,GeneID:5712159;gbkey=CDS;product=putative citrate transporter;protein_id=YP_001531583.1;transl_table=11
NC_009952.1	RefSeq	gene	231585	232649	.	+	.	ID=gene233;Name=Dshi_0234;Dbxref=GeneID:5712160;gbkey=Gene;locus_tag=Dshi_0234
NC_009952.1	RefSeq	CDS	231585	232649	.	+	0	ID=cds231;Name=YP_001531584.1;Parent=gene233;Note=KEGG: sil:SPO2161 hypothetical protein%3B no significant swissprot hit%2C Hedgehog%2Fintein %28Hint%29 domain%2C Ref ZP hit to type I secretion target repeat protein fromRoseovarius sp. 217%3B same like Dshi_232;Dbxref=Genbank:YP_001531584.1,GeneID:5712160;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531584.1;transl_table=11
NC_009952.1	RefSeq	gene	232709	233782	.	+	.	ID=gene234;Name=pheS;Dbxref=GeneID:5712161;gbkey=Gene;gene=pheS;locus_tag=Dshi_0235
NC_009952.1	RefSeq	CDS	232709	233782	.	+	0	ID=cds232;Name=YP_001531585.1;Parent=gene234;Note=catalyzes a two-step reaction%2C first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA%3B forms a heterotetramer of alpha%282%29beta%282%29%3B binds two magnesium ions per tetramer%3B type 1 subfamily;Dbxref=Genbank:YP_001531585.1,GeneID:5712161;gbkey=CDS;gene=pheS;product=phenylalanyl-tRNA synthetase subunit alpha;protein_id=YP_001531585.1;transl_table=11
NC_009952.1	RefSeq	gene	233956	234210	.	+	.	ID=gene235;Name=Dshi_0236;Dbxref=GeneID:5712162;gbkey=Gene;locus_tag=Dshi_0236
NC_009952.1	RefSeq	CDS	233956	234210	.	+	0	ID=cds233;Name=YP_001531586.1;Parent=gene235;Note=no swissprot%2C bad Ref ZP hit to phenylalanyl-tRNA synthetase beta subunit from Loktanella vestfoldensis SKA53%2C no conserved domains%2C just short signalpeptide and two transmembrane regions%2C bad GC frame plot%2C maybe Dshi_0236 is part of Dshi_0237%3F;Dbxref=Genbank:YP_001531586.1,GeneID:5712162;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531586.1;transl_table=11
NC_009952.1	RefSeq	gene	234571	236967	.	+	.	ID=gene236;Name=pheT;Dbxref=GeneID:5712163;gbkey=Gene;gene=pheT;locus_tag=Dshi_0237
NC_009952.1	RefSeq	CDS	234571	236967	.	+	0	ID=cds234;Name=YP_001531587.1;Parent=gene236;Note=catalyzes a two-step reaction%2C first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA%3B forms a tetramer of alpha%282%29beta%282%29%3B binds two magnesium ions per tetramer%3B type 2 subfamily;Dbxref=Genbank:YP_001531587.1,GeneID:5712163;gbkey=CDS;gene=pheT;product=phenylalanyl-tRNA synthetase subunit beta;protein_id=YP_001531587.1;transl_table=11
NC_009952.1	RefSeq	gene	237254	237724	.	+	.	ID=gene237;Name=Dshi_0238;Dbxref=GeneID:5712164;gbkey=Gene;locus_tag=Dshi_0238
NC_009952.1	RefSeq	CDS	237254	237724	.	+	0	ID=cds235;Name=YP_001531588.1;Parent=gene237;Note=KEGG: sil:SPO3492 hypothetical protein%3B no swissprot%3B best Ref hit to succinate dehydrogenase iron-sulfur subunit from Roseobacter sp. AzwK-3b%3B no conserved domains;Dbxref=Genbank:YP_001531588.1,GeneID:5712164;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531588.1;transl_table=11
NC_009952.1	RefSeq	gene	237729	238490	.	-	.	ID=gene238;Name=nadX;Dbxref=GeneID:5712165;gbkey=Gene;gene=nadX;locus_tag=Dshi_0239
NC_009952.1	RefSeq	CDS	237729	238490	.	-	0	ID=cds236;Name=YP_001531589.1;Parent=gene238;Note=PFAM: aspartate dehydrogenase%3B homoserine dehydrogenase NAD-binding KEGG: mes:Meso_0824 aspartate dehydrogenase;Dbxref=Genbank:YP_001531589.1,GeneID:5712165;gbkey=CDS;gene=nadX;product=aspartate dehydrogenase;protein_id=YP_001531589.1;transl_table=11
NC_009952.1	RefSeq	gene	238487	239185	.	-	.	ID=gene239;Name=gst3;Dbxref=GeneID:5712166;gbkey=Gene;gene=gst3;locus_tag=Dshi_0240
NC_009952.1	RefSeq	CDS	238487	239185	.	-	0	ID=cds237;Name=YP_001531590.1;Parent=gene239;Note=PFAM: Glutathione S-transferase domain KEGG: sil:SPO3494 glutathione S-transferase family protein;Dbxref=Genbank:YP_001531590.1,GeneID:5712166;gbkey=CDS;gene=gst3;product=glutathione S-transferase domain-containing protein;protein_id=YP_001531590.1;transl_table=11
NC_009952.1	RefSeq	gene	239334	239729	.	+	.	ID=gene240;Name=mscL;Dbxref=GeneID:5712167;gbkey=Gene;gene=mscL;locus_tag=Dshi_0241
NC_009952.1	RefSeq	CDS	239334	239729	.	+	0	ID=cds238;Name=YP_001531591.1;Parent=gene240;Note=TIGRFAM: large conductance mechanosensitive channel protein PFAM: large-conductance mechanosensitive channel KEGG: jan:Jann_0457 large conductance mechanosensitive channel protein;Dbxref=Genbank:YP_001531591.1,GeneID:5712167;gbkey=CDS;gene=mscL;product=large conductance mechanosensitive channel protein;protein_id=YP_001531591.1;transl_table=11
NC_009952.1	RefSeq	gene	239815	240792	.	+	.	ID=gene241;Name=Dshi_0242;Dbxref=GeneID:5712168;gbkey=Gene;locus_tag=Dshi_0242
NC_009952.1	RefSeq	CDS	239815	240792	.	+	0	ID=cds239;Name=YP_001531592.1;Parent=gene241;Note=PFAM: fatty acid hydroxylase KEGG: hne:HNE_0606 hypothetical protein%3B no significant swissprot hit%2C middle Ref YP hit to hypothetical protein HNE_0606 from Hyphomonas neptunium ATCC 15444%2C Erg3 domain: sterol desaturase and fatty acid hydroxylase superfamily domain;Dbxref=Genbank:YP_001531592.1,GeneID:5712168;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531592.1;transl_table=11
NC_009952.1	RefSeq	gene	240789	241940	.	+	.	ID=gene242;Name=Dshi_0243;Dbxref=GeneID:5712169;gbkey=Gene;locus_tag=Dshi_0243
NC_009952.1	RefSeq	CDS	240789	241940	.	+	0	ID=cds240;Name=YP_001531593.1;Parent=gene242;Note=PFAM: acyltransferase 3 KEGG: hne:HNE_0605 acyltransferase family protein%3B bad swissprot to transferases%2C middle Ref YP hit to acyltransferase family protein from Hyphomonas neptunium ATCC 15444;Dbxref=Genbank:YP_001531593.1,GeneID:5712169;gbkey=CDS;product=acyltransferase family protein;protein_id=YP_001531593.1;transl_table=11
NC_009952.1	RefSeq	gene	241950	243065	.	-	.	ID=gene243;Name=adh;Dbxref=GeneID:5712170;gbkey=Gene;gene=adh;locus_tag=Dshi_0244
NC_009952.1	RefSeq	CDS	241950	243065	.	-	0	ID=cds241;Name=YP_001531594.1;Parent=gene243;Note=TIGRFAM: alanine dehydrogenase PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding%3B alanine dehydrogenase%2FPNT domain protein KEGG: sit:TM1040_3628 alanine dehydrogenase%3B high swissprot;Dbxref=Genbank:YP_001531594.1,GeneID:5712170;gbkey=CDS;gene=adh;product=alanine dehydrogenase;protein_id=YP_001531594.1;transl_table=11
NC_009952.1	RefSeq	gene	243155	243664	.	+	.	ID=gene244;Name=asnC;Dbxref=GeneID:5712171;gbkey=Gene;gene=asnC;locus_tag=Dshi_0245
NC_009952.1	RefSeq	CDS	243155	243664	.	+	0	ID=cds242;Name=YP_001531595.1;Parent=gene244;Note=PFAM: regulatory protein AsnC%2FLrp family KEGG: jan:Jann_0459 transcriptional regulator%2C AsnC family%3B AsnC family;Dbxref=Genbank:YP_001531595.1,GeneID:5712171;gbkey=CDS;gene=asnC;product=transcriptional regulator;protein_id=YP_001531595.1;transl_table=11
NC_009952.1	RefSeq	gene	243756	243962	.	-	.	ID=gene245;Name=rpsU;Dbxref=GeneID:5712172;gbkey=Gene;gene=rpsU;locus_tag=Dshi_0246
NC_009952.1	RefSeq	CDS	243756	243962	.	-	0	ID=cds243;Name=YP_001531596.1;Parent=gene245;Note=a small basic protein that is one of the last in the subunit assembly%3B omission does not prevent assembly but the subunit is inactive%3B binds central domain of 16S rRNA;Dbxref=Genbank:YP_001531596.1,GeneID:5712172;gbkey=CDS;gene=rpsU;product=30S ribosomal protein S21;protein_id=YP_001531596.1;transl_table=11
NC_009952.1	RefSeq	gene	244084	244782	.	+	.	ID=gene246;Name=Dshi_0247;Dbxref=GeneID:5712173;gbkey=Gene;locus_tag=Dshi_0247
NC_009952.1	RefSeq	CDS	244084	244782	.	+	0	ID=cds244;Name=YP_001531597.1;Parent=gene246;Note=TIGRFAM: rpsU-divergently transcribed protein PFAM: COQ9 domain protein KEGG: rde:RD1_1038 hypothetical protein%2C best Ref hits to hypothetical proteins%2C middel swissprot hit to Ubiquinone biosynthesis protein COQ9 from Drosophila melanogaster %28fruit fly%29%2C gene arrangement with following gene %28Dshi_0248 quinone oxidoreductase%29%3F;Dbxref=Genbank:YP_001531597.1,GeneID:5712173;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531597.1;transl_table=11
NC_009952.1	RefSeq	gene	244793	245779	.	+	.	ID=gene247;Name=Dshi_0248;Dbxref=GeneID:5712174;gbkey=Gene;locus_tag=Dshi_0248
NC_009952.1	RefSeq	CDS	244793	245779	.	+	0	ID=cds245;Name=YP_001531598.1;Parent=gene247;Note=TIGRFAM: Quinone oxidoreductase putative PIG3 PFAM: Alcohol dehydrogenase zinc-binding domain protein%3B Alcohol dehydrogenase GroES domain protein KEGG: rsq:Rsph17025_2435 alcohol dehydrogenase%2C zinc-binding domain protein;Dbxref=Genbank:YP_001531598.1,GeneID:5712174;gbkey=CDS;product=quinone oxidoreductase putative PIG3;protein_id=YP_001531598.1;transl_table=11
NC_009952.1	RefSeq	gene	246115	246699	.	-	.	ID=gene248;Name=Dshi_0249;Dbxref=GeneID:5712175;gbkey=Gene;locus_tag=Dshi_0249
NC_009952.1	RefSeq	CDS	246115	246699	.	-	0	ID=cds246;Name=YP_001531599.1;Parent=gene248;Note=located downstream of an ORF representing the N-terminal part of RND subunit%2C putative sequencing error colocated with MFP subunit%3B pfam00873%2C%3B RND family%2C C-terminal part of RND subunit;Dbxref=Genbank:YP_001531599.1,GeneID:5712175;gbkey=CDS;product=efflux transporter;protein_id=YP_001531599.1;transl_table=11
NC_009952.1	RefSeq	gene	246745	249237	.	-	.	ID=gene249;Name=Dshi_0250;Dbxref=GeneID:5712176;gbkey=Gene;locus_tag=Dshi_0250
NC_009952.1	RefSeq	CDS	246745	249237	.	-	0	ID=cds247;Name=YP_001531600.1;Parent=gene249;Note=located upstream of an ORF representing the C-terminal part of RND subunit%2C putative sequencing error colocated with MFP subunit%3B pfam00873%2C%3B RND family%2C N-terminal part of RND subunit;Dbxref=Genbank:YP_001531600.1,GeneID:5712176;gbkey=CDS;product=efflux transporter;protein_id=YP_001531600.1;transl_table=11
NC_009952.1	RefSeq	gene	249241	250392	.	-	.	ID=gene250;Name=Dshi_0251;Dbxref=GeneID:5712177;gbkey=Gene;locus_tag=Dshi_0251
NC_009952.1	RefSeq	CDS	249241	250392	.	-	0	ID=cds248;Name=YP_001531601.1;Parent=gene250;Note=colocated with RND subunit%3B TIGRFAM: efflux transporter%2C RND family%2C MFP subunit PFAM: secretion protein HlyD family protein KEGG: jan:Jann_1310 secretion protein HlyD%3B RND family%2C MFP subunit;Dbxref=Genbank:YP_001531601.1,GeneID:5712177;gbkey=CDS;product=efflux transporter;protein_id=YP_001531601.1;transl_table=11
NC_009952.1	RefSeq	gene	250470	251144	.	+	.	ID=gene251;Name=Dshi_0252;Dbxref=GeneID:5712178;gbkey=Gene;locus_tag=Dshi_0252
NC_009952.1	RefSeq	CDS	250470	251144	.	+	0	ID=cds249;Name=YP_001531602.1;Parent=gene251;Note=PFAM: regulatory protein TetR KEGG: jan:Jann_1309 transcriptional regulator%2C TetR family%3B TetR family;Dbxref=Genbank:YP_001531602.1,GeneID:5712178;gbkey=CDS;product=transcriptional regulator;protein_id=YP_001531602.1;transl_table=11
NC_009952.1	RefSeq	gene	251200	252759	.	+	.	ID=gene252;Name=Dshi_0253;Dbxref=GeneID:5712179;gbkey=Gene;locus_tag=Dshi_0253
NC_009952.1	RefSeq	CDS	251200	252759	.	+	0	ID=cds250;Name=YP_001531603.1;Parent=gene252;Note=PFAM: AMP-dependent synthetase and ligase KEGG: sil:SPO0801 4-coumarate:CoA ligase%3B high swissprot to 4-coumarate--CoA ligase 1 from Nicotiana tabacum;Dbxref=Genbank:YP_001531603.1,GeneID:5712179;gbkey=CDS;product=acyl-CoA synthetase%2FAMP-acid ligase II;protein_id=YP_001531603.1;transl_table=11
NC_009952.1	RefSeq	gene	252790	253431	.	-	.	ID=gene253;Name=Dshi_0254;Dbxref=GeneID:5712180;gbkey=Gene;locus_tag=Dshi_0254
NC_009952.1	RefSeq	CDS	252790	253431	.	-	0	ID=cds251;Name=YP_001531604.1;Parent=gene253;Note=PFAM: ribonuclease T2 KEGG: jan:Jann_3879 ribonuclease T2%2C unsure GC frame plot;Dbxref=Genbank:YP_001531604.1,GeneID:5712180;gbkey=CDS;product=ribonuclease T2;protein_id=YP_001531604.1;transl_table=11
NC_009952.1	RefSeq	gene	253588	254340	.	+	.	ID=gene254;Name=Dshi_0255;Dbxref=GeneID:5712181;gbkey=Gene;locus_tag=Dshi_0255
NC_009952.1	RefSeq	CDS	253588	254340	.	+	0	ID=cds252;Name=YP_001531605.1;Parent=gene254;Note=PFAM: protein of unknown function DUF1013 KEGG: rde:RD1_1043 hypothetical protein;Dbxref=Genbank:YP_001531605.1,GeneID:5712181;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531605.1;transl_table=11
NC_009952.1	RefSeq	gene	254419	254667	.	-	.	ID=gene255;Name=Dshi_0256;Dbxref=GeneID:5712182;gbkey=Gene;locus_tag=Dshi_0256
NC_009952.1	RefSeq	CDS	254419	254667	.	-	0	ID=cds253;Name=YP_001531606.1;Parent=gene255;Note=no significant BLAST hits%2C no conserved domains;Dbxref=Genbank:YP_001531606.1,GeneID:5712182;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531606.1;transl_table=11
NC_009952.1	RefSeq	gene	254727	256076	.	-	.	ID=gene256;Name=Dshi_0257;Dbxref=GeneID:5712183;gbkey=Gene;locus_tag=Dshi_0257
NC_009952.1	RefSeq	CDS	254727	256076	.	-	0	ID=cds254;Name=YP_001531607.1;Parent=gene256;Note=PFAM: peptidase S8 and S53 subtilisin kexin sedolisin KEGG: sma:SAV5709 protease%3B good swissprot to Subtilisin E precursor from Bacillus subtilis;Dbxref=Genbank:YP_001531607.1,GeneID:5712183;gbkey=CDS;product=peptidase S8%2FS53 subtilisin kexin sedolisin;protein_id=YP_001531607.1;transl_table=11
NC_009952.1	RefSeq	gene	256271	256471	.	+	.	ID=gene257;Name=secE;Dbxref=GeneID:5712184;gbkey=Gene;gene=secE;locus_tag=Dshi_0258
NC_009952.1	RefSeq	CDS	256271	256471	.	+	0	ID=cds255;Name=YP_001531608.1;Parent=gene257;Note=part of the sec system translocase;Dbxref=Genbank:YP_001531608.1,GeneID:5712184;gbkey=CDS;gene=secE;product=preprotein translocase subunit SecE;protein_id=YP_001531608.1;transl_table=11
NC_009952.1	RefSeq	gene	256673	257206	.	+	.	ID=gene258;Name=nusG;Dbxref=GeneID:5712185;gbkey=Gene;gene=nusG;locus_tag=Dshi_0259
NC_009952.1	RefSeq	CDS	256673	257206	.	+	0	ID=cds256;Name=YP_001531609.1;Parent=gene258;Note=TIGRFAM: transcription termination%2Fantitermination factor NusG PFAM: KOW domain protein%3B NGN domain protein KEGG: rsq:Rsph17025_2547 NusG antitermination factor;Dbxref=Genbank:YP_001531609.1,GeneID:5712185;gbkey=CDS;gene=nusG;product=NusG antitermination factor;protein_id=YP_001531609.1;transl_table=11
NC_009952.1	RefSeq	gene	257310	257735	.	+	.	ID=gene259;Name=rplK;Dbxref=GeneID:5712186;gbkey=Gene;gene=rplK;locus_tag=Dshi_0260
NC_009952.1	RefSeq	CDS	257310	257735	.	+	0	ID=cds257;Name=YP_001531610.1;Parent=gene259;Note=binds directly to 23S ribosomal RNA;Dbxref=Genbank:YP_001531610.1,GeneID:5712186;gbkey=CDS;gene=rplK;product=50S ribosomal protein L11;protein_id=YP_001531610.1;transl_table=11
NC_009952.1	RefSeq	gene	257737	258435	.	+	.	ID=gene260;Name=rplA;Dbxref=GeneID:5712187;gbkey=Gene;gene=rplA;locus_tag=Dshi_0261
NC_009952.1	RefSeq	CDS	257737	258435	.	+	0	ID=cds258;Name=YP_001531611.1;Parent=gene260;Note=in Escherichia coli and Methanococcus%2C this protein autoregulates expression%3B the binding site in the mRNA mimics the binding site in the 23S rRNA;Dbxref=Genbank:YP_001531611.1,GeneID:5712187;gbkey=CDS;gene=rplA;product=50S ribosomal protein L1;protein_id=YP_001531611.1;transl_table=11
NC_009952.1	RefSeq	gene	258788	259516	.	+	.	ID=gene261;Name=Dshi_0262;Dbxref=GeneID:5712188;gbkey=Gene;locus_tag=Dshi_0262
NC_009952.1	RefSeq	CDS	258788	259516	.	+	0	ID=cds259;Name=YP_001531612.1;Parent=gene261;Note=KEGG: jan:Jann_2686 hypothetical protein%3B PEP-CTERM putative exosortase interaction domain%3B no significant swissprot%2C bad Ref hits;Dbxref=Genbank:YP_001531612.1,GeneID:5712188;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531612.1;transl_table=11
NC_009952.1	RefSeq	gene	259644	260429	.	+	.	ID=gene262;Name=fkbM;Dbxref=GeneID:5712189;gbkey=Gene;gene=fkbM;locus_tag=Dshi_0263
NC_009952.1	RefSeq	CDS	259644	260429	.	+	0	ID=cds260;Name=YP_001531613.1;Parent=gene262;Note=TIGRFAM: methyltransferase FkbM family KEGG: jan:Jann_0310 methyltransferase FkbM%3B no significant swissprot;Dbxref=Genbank:YP_001531613.1,GeneID:5712189;gbkey=CDS;gene=fkbM;product=FkbM family methyltransferase;protein_id=YP_001531613.1;transl_table=11
NC_009952.1	RefSeq	gene	260484	261542	.	+	.	ID=gene263;Name=Dshi_0264;Dbxref=GeneID:5712190;gbkey=Gene;locus_tag=Dshi_0264
NC_009952.1	RefSeq	CDS	260484	261542	.	+	0	ID=cds261;Name=YP_001531614.1;Parent=gene263;Note=KEGG: jan:Jann_2490 hemolysin-type calcium-binding protein%2C middle Ref hits to hypothetical proteins%2C no swissprot%2C C-terminal beginning of unsure GC frame plot;Dbxref=Genbank:YP_001531614.1,GeneID:5712190;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531614.1;transl_table=11
NC_009952.1	RefSeq	gene	261837	262355	.	+	.	ID=gene264;Name=rplJ;Dbxref=GeneID:5712191;gbkey=Gene;gene=rplJ;locus_tag=Dshi_0265
NC_009952.1	RefSeq	CDS	261837	262355	.	+	0	ID=cds262;Name=YP_001531615.1;Parent=gene264;Note=binds the two ribosomal protein L7%2FL12 dimers and anchors them to the large ribosomal subunit;Dbxref=Genbank:YP_001531615.1,GeneID:5712191;gbkey=CDS;gene=rplJ;product=50S ribosomal protein L10;protein_id=YP_001531615.1;transl_table=11
NC_009952.1	RefSeq	gene	262428	262808	.	+	.	ID=gene265;Name=rplL;Dbxref=GeneID:5712192;gbkey=Gene;gene=rplL;locus_tag=Dshi_0266
NC_009952.1	RefSeq	CDS	262428	262808	.	+	0	ID=cds263;Name=YP_001531616.1;Parent=gene265;Note=present in two forms%3B L12 is normal%2C while L7 is aminoacylated at the N-terminal serine%3B the only multicopy ribosomal protein%3B 4:1 ratio of L7%2FL12 per ribosome%3B two L12 dimers bind L10%3B critically important for translation efficiency and fidelity%3B stimulates GTPase activity of translation factors;Dbxref=Genbank:YP_001531616.1,GeneID:5712192;gbkey=CDS;gene=rplL;product=50S ribosomal protein L7%2FL12;protein_id=YP_001531616.1;transl_table=11
NC_009952.1	RefSeq	gene	262945	264294	.	+	.	ID=gene266;Name=Dshi_0267;Dbxref=GeneID:5712193;gbkey=Gene;locus_tag=Dshi_0267
NC_009952.1	RefSeq	CDS	262945	264294	.	+	0	ID=cds264;Name=YP_001531617.1;Parent=gene266;Note=KEGG: pde:Pden_2598 PpiC-type peptidyl-prolyl cis-trans isomerase%3B bad BLAST hits%2C unsure GC frame plot%2C RBS site AGGAT;Dbxref=Genbank:YP_001531617.1,GeneID:5712193;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531617.1;transl_table=11
NC_009952.1	RefSeq	gene	264787	268923	.	+	.	ID=gene267;Name=rpoB;Dbxref=GeneID:5712194;gbkey=Gene;gene=rpoB;locus_tag=Dshi_0268
NC_009952.1	RefSeq	CDS	264787	268923	.	+	0	ID=cds265;Name=YP_001531618.1;Parent=gene267;Note=DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates%3B beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme;Dbxref=Genbank:YP_001531618.1,GeneID:5712194;gbkey=CDS;gene=rpoB;product=DNA-directed RNA polymerase subunit beta;protein_id=YP_001531618.1;transl_table=11
NC_009952.1	RefSeq	gene	269021	273268	.	+	.	ID=gene268;Name=rpoC;Dbxref=GeneID:5711519;gbkey=Gene;gene=rpoC;locus_tag=Dshi_0269
NC_009952.1	RefSeq	CDS	269021	273268	.	+	0	ID=cds266;Name=YP_001531619.1;Parent=gene268;Note=DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta%27 binds to sigma factor allowing it to bind to the -10 region of the promoter;Dbxref=Genbank:YP_001531619.1,GeneID:5711519;gbkey=CDS;gene=rpoC;product=DNA-directed RNA polymerase subunit beta%27;protein_id=YP_001531619.1;transl_table=11
NC_009952.1	RefSeq	gene	273419	274324	.	+	.	ID=gene269;Name=Dshi_0270;Dbxref=GeneID:5711520;gbkey=Gene;locus_tag=Dshi_0270
NC_009952.1	RefSeq	CDS	273419	274324	.	+	0	ID=cds267;Name=YP_001531620.1;Parent=gene269;Note=PFAM: protein of unknown function DUF6 transmembrane KEGG: sil:SPO3504 hypothetical protein%3B best Ref ZP hit to membrane protein%2C putative and bad swissprot to S-adenosylmethionine uptake transporter from Rickettsia typhi;Dbxref=Genbank:YP_001531620.1,GeneID:5711520;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531620.1;transl_table=11
NC_009952.1	RefSeq	gene	274606	274977	.	+	.	ID=gene270;Name=rpsL;Dbxref=GeneID:5711521;gbkey=Gene;gene=rpsL;locus_tag=Dshi_0271
NC_009952.1	RefSeq	CDS	274606	274977	.	+	0	ID=cds268;Name=YP_001531621.1;Parent=gene270;Note=interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone%3B located at the interface of the 30S and 50S subunits%2C it traverses the body of the 30S subunit contacting proteins on the other side%3B mutations in the S12 gene confer streptomycin resistance;Dbxref=Genbank:YP_001531621.1,GeneID:5711521;gbkey=CDS;gene=rpsL;product=30S ribosomal protein S12;protein_id=YP_001531621.1;transl_table=11
NC_009952.1	RefSeq	gene	274990	275460	.	+	.	ID=gene271;Name=rpsG;Dbxref=GeneID:5711522;gbkey=Gene;gene=rpsG;locus_tag=Dshi_0272
NC_009952.1	RefSeq	CDS	274990	275460	.	+	0	ID=cds269;Name=YP_001531622.1;Parent=gene271;Note=binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit;Dbxref=Genbank:YP_001531622.1,GeneID:5711522;gbkey=CDS;gene=rpsG;product=30S ribosomal protein S7;protein_id=YP_001531622.1;transl_table=11
NC_009952.1	RefSeq	gene	275486	277603	.	+	.	ID=gene272;Name=fusA;Dbxref=GeneID:5711523;gbkey=Gene;gene=fusA;locus_tag=Dshi_0273
NC_009952.1	RefSeq	CDS	275486	277603	.	+	0	ID=cds270;Name=YP_001531623.1;Parent=gene272;Note=EF-G%3B promotes GTP-dependent translocation of the ribosome during translation%3B many organisms have multiple copies of this gene;Dbxref=Genbank:YP_001531623.1,GeneID:5711523;gbkey=CDS;gene=fusA;product=elongation factor G;protein_id=YP_001531623.1;transl_table=11
NC_009952.1	RefSeq	gene	277686	278861	.	+	.	ID=gene273;Name=tufA1;Dbxref=GeneID:5711524;gbkey=Gene;gene=tufA1;locus_tag=Dshi_0274
NC_009952.1	RefSeq	CDS	277686	278861	.	+	0	ID=cds271;Name=YP_001531624.1;Parent=gene273;Note=EF-Tu%3B promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis%3B when the tRNA anticodon matches the mRNA codon%2C GTP hydrolysis results%3B the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts%3B many prokaryotes have two copies of the gene encoding EF-Tu;Dbxref=Genbank:YP_001531624.1,GeneID:5711524;gbkey=CDS;gene=tufA1;product=elongation factor Tu;protein_id=YP_001531624.1;transl_table=11
NC_009952.1	RefSeq	gene	278960	279280	.	+	.	ID=gene274;Name=rpsJ;Dbxref=GeneID:5711525;gbkey=Gene;gene=rpsJ;locus_tag=Dshi_0275
NC_009952.1	RefSeq	CDS	278960	279280	.	+	0	ID=cds272;Name=YP_001531625.1;Parent=gene274;Note=NusE%3B involved in assembly of the 30S subunit%3B in the ribosome%2C this protein is involved in the binding of tRNA%3B in Escherichia coli this protein was also found to be involved in transcription antitermination%3B NusB%2FS10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination%3B binding of NusB%2FS10 to boxA nucleates assembly of the antitermination complex;Dbxref=Genbank:YP_001531625.1,GeneID:5711525;gbkey=CDS;gene=rpsJ;product=30S ribosomal protein S10;protein_id=YP_001531625.1;transl_table=11
NC_009952.1	RefSeq	gene	279295	280134	.	+	.	ID=gene275;Name=rplC;Dbxref=GeneID:5711526;gbkey=Gene;gene=rplC;locus_tag=Dshi_0276
NC_009952.1	RefSeq	CDS	279295	280134	.	+	0	ID=cds273;Name=YP_001531626.1;Parent=gene275;Note=binds directly near the 3%27 end of the 23S rRNA%2C where it nucleates assembly of the 50S subunit%3B essential for peptidyltransferase activity%3B mutations in this gene confer resistance to tiamulin;Dbxref=Genbank:YP_001531626.1,GeneID:5711526;gbkey=CDS;gene=rplC;product=50S ribosomal protein L3;protein_id=YP_001531626.1;transl_table=11
NC_009952.1	RefSeq	gene	280131	280748	.	+	.	ID=gene276;Name=rplD;Dbxref=GeneID:5711527;gbkey=Gene;gene=rplD;locus_tag=Dshi_0277
NC_009952.1	RefSeq	CDS	280131	280748	.	+	0	ID=cds274;Name=YP_001531627.1;Parent=gene276;Note=L4 is important during the early stages of 50S assembly%3B it initially binds near the 5%27 end of the 23S rRNA;Dbxref=Genbank:YP_001531627.1,GeneID:5711527;gbkey=CDS;gene=rplD;product=50S ribosomal protein L4;protein_id=YP_001531627.1;transl_table=11
NC_009952.1	RefSeq	gene	280745	281041	.	+	.	ID=gene277;Name=rplW;Dbxref=GeneID:5711528;gbkey=Gene;gene=rplW;locus_tag=Dshi_0278
NC_009952.1	RefSeq	CDS	280745	281041	.	+	0	ID=cds275;Name=YP_001531628.1;Parent=gene277;Note=binds third domain of 23S rRNA and protein L29%3B part of exit tunnel;Dbxref=Genbank:YP_001531628.1,GeneID:5711528;gbkey=CDS;gene=rplW;product=50S ribosomal protein L23;protein_id=YP_001531628.1;transl_table=11
NC_009952.1	RefSeq	gene	281137	281487	.	-	.	ID=gene278;Name=Dshi_0279;Dbxref=GeneID:5711529;gbkey=Gene;locus_tag=Dshi_0279
NC_009952.1	RefSeq	CDS	281137	281487	.	-	0	ID=cds276;Name=YP_001531629.1;Parent=gene278;Note=no significant BLAST hits%2C no conserved domains%2C unsure GC frame plot;Dbxref=Genbank:YP_001531629.1,GeneID:5711529;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531629.1;transl_table=11
NC_009952.1	RefSeq	gene	281779	282159	.	-	.	ID=gene279;Name=Dshi_0280;Dbxref=GeneID:5711530;gbkey=Gene;locus_tag=Dshi_0280
NC_009952.1	RefSeq	CDS	281779	282159	.	-	0	ID=cds277;Name=YP_001531630.1;Parent=gene279;Note=KEGG: rde:RD1_1404 hypothetical protein%2C no significant swissprot hit%2C unsure GC frame plot;Dbxref=Genbank:YP_001531630.1,GeneID:5711530;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531630.1;transl_table=11
NC_009952.1	RefSeq	gene	282323	282814	.	-	.	ID=gene280;Name=Dshi_0281;Dbxref=GeneID:5711531;gbkey=Gene;locus_tag=Dshi_0281
NC_009952.1	RefSeq	CDS	282323	282814	.	-	0	ID=cds278;Name=YP_001531631.1;Parent=gene280;Note=KEGG: rde:RD1_3741 YHS domain protein%2C no swissprot%3B is located in the midst of a unsure GC frame plot region;Dbxref=Genbank:YP_001531631.1,GeneID:5711531;gbkey=CDS;product=YHS domain-containing protein;protein_id=YP_001531631.1;transl_table=11
NC_009952.1	RefSeq	gene	283471	283737	.	+	.	ID=gene281;Name=Dshi_0282;Dbxref=GeneID:5711532;gbkey=Gene;locus_tag=Dshi_0282
NC_009952.1	RefSeq	CDS	283471	283737	.	+	0	ID=cds279;Name=YP_001531632.1;Parent=gene281;Note=no swissprot%2C bad Ref hits%2C no conserved domains%2C unsure GC frame plot;Dbxref=Genbank:YP_001531632.1,GeneID:5711532;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531632.1;transl_table=11
NC_009952.1	RefSeq	gene	283818	284120	.	+	.	ID=gene282;Name=Dshi_0283;Dbxref=GeneID:5711533;gbkey=Gene;locus_tag=Dshi_0283
NC_009952.1	RefSeq	CDS	283818	284120	.	+	0	ID=cds280;Name=YP_001531633.1;Parent=gene282;Note=no swissprot%2C bad Ref hits%2C no conserved domains%2C unsure GC frame plot;Dbxref=Genbank:YP_001531633.1,GeneID:5711533;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531633.1;transl_table=11
NC_009952.1	RefSeq	gene	284463	285113	.	+	.	ID=gene283;Name=Dshi_0284;Dbxref=GeneID:5711534;gbkey=Gene;locus_tag=Dshi_0284
NC_009952.1	RefSeq	CDS	284463	285113	.	+	0	ID=cds281;Name=YP_001531634.1;Parent=gene283;Note=KEGG: rsq:Rsph17025_2139 hypothetical protein%3B bad swissprot to 31 kDa outer-membrane immunogenic protein precursor from Brucella melitensis%3B middle Ref ZP hit to possible outer membrane protein from Roseovarius sp. 217%3B Autotransporter beta-domain;Dbxref=Genbank:YP_001531634.1,GeneID:5711534;gbkey=CDS;product=putative outer membrane protein;protein_id=YP_001531634.1;transl_table=11
NC_009952.1	RefSeq	gene	285409	286251	.	+	.	ID=gene284;Name=rplB;Dbxref=GeneID:5711535;gbkey=Gene;gene=rplB;locus_tag=Dshi_0285
NC_009952.1	RefSeq	CDS	285409	286251	.	+	0	ID=cds282;Name=YP_001531635.1;Parent=gene284;Note=one of the primary rRNA-binding proteins%3B required for association of the 30S and 50S subunits to form the 70S ribosome%2C for tRNA binding and peptide bond formation;Dbxref=Genbank:YP_001531635.1,GeneID:5711535;gbkey=CDS;gene=rplB;product=50S ribosomal protein L2;protein_id=YP_001531635.1;transl_table=11
NC_009952.1	RefSeq	gene	286255	286533	.	+	.	ID=gene285;Name=rpsS;Dbxref=GeneID:5711536;gbkey=Gene;gene=rpsS;locus_tag=Dshi_0286
NC_009952.1	RefSeq	CDS	286255	286533	.	+	0	ID=cds283;Name=YP_001531636.1;Parent=gene285;Note=protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA;Dbxref=Genbank:YP_001531636.1,GeneID:5711536;gbkey=CDS;gene=rpsS;product=30S ribosomal protein S19;protein_id=YP_001531636.1;transl_table=11
NC_009952.1	RefSeq	gene	286537	286917	.	+	.	ID=gene286;Name=rplV;Dbxref=GeneID:5711537;gbkey=Gene;gene=rplV;locus_tag=Dshi_0287
NC_009952.1	RefSeq	CDS	286537	286917	.	+	0	ID=cds284;Name=YP_001531637.1;Parent=gene286;Note=binds specifically to 23S rRNA during the early stages of 50S assembly%3B makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome%3B mutations in this gene result in erythromycin resistance%3B located near peptidyl-transferase center;Dbxref=Genbank:YP_001531637.1,GeneID:5711537;gbkey=CDS;gene=rplV;product=50S ribosomal protein L22;protein_id=YP_001531637.1;transl_table=11
NC_009952.1	RefSeq	gene	286917	287639	.	+	.	ID=gene287;Name=rpsC;Dbxref=GeneID:5711538;gbkey=Gene;gene=rpsC;locus_tag=Dshi_0288
NC_009952.1	RefSeq	CDS	286917	287639	.	+	0	ID=cds285;Name=YP_001531638.1;Parent=gene287;Note=forms a complex with S10 and S14%3B binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation;Dbxref=Genbank:YP_001531638.1,GeneID:5711538;gbkey=CDS;gene=rpsC;product=30S ribosomal protein S3;protein_id=YP_001531638.1;transl_table=11
NC_009952.1	RefSeq	gene	287653	288066	.	+	.	ID=gene288;Name=rplP;Dbxref=GeneID:5711539;gbkey=Gene;gene=rplP;locus_tag=Dshi_0289
NC_009952.1	RefSeq	CDS	287653	288066	.	+	0	ID=cds286;Name=YP_001531639.1;Parent=gene288;Note=located in the peptidyl transferase center and may be involved in peptidyl transferase activity%3B similar to archaeal L10e;Dbxref=Genbank:YP_001531639.1,GeneID:5711539;gbkey=CDS;gene=rplP;product=50S ribosomal protein L16;protein_id=YP_001531639.1;transl_table=11
NC_009952.1	RefSeq	gene	288217	288447	.	+	.	ID=gene289;Name=Dshi_0290;Dbxref=GeneID:5711540;gbkey=Gene;locus_tag=Dshi_0290
NC_009952.1	RefSeq	CDS	288217	288447	.	+	0	ID=cds287;Name=YP_001531640.1;Parent=gene289;Note=KEGG: sit:TM1040_3827 hypothetical protein%3B short signalpeptide and three transmembrane region%3B no swissprot%2C bad Ref hits to hypothetical proteins;Dbxref=Genbank:YP_001531640.1,GeneID:5711540;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531640.1;transl_table=11
NC_009952.1	RefSeq	gene	289020	289409	.	-	.	ID=gene290;Name=Dshi_0291;Dbxref=GeneID:5711541;gbkey=Gene;locus_tag=Dshi_0291
NC_009952.1	RefSeq	CDS	289020	289409	.	-	0	ID=cds288;Name=YP_001531641.1;Parent=gene290;Note=KEGG: rde:RD1_0735 hypothetical protein%3B bad Ref hits to hypothetical proteins%3B short signalpeptide and four transmembrane regions%3B no significant swissprot;Dbxref=Genbank:YP_001531641.1,GeneID:5711541;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531641.1;transl_table=11
NC_009952.1	RefSeq	gene	289461	290186	.	-	.	ID=gene291;Name=Dshi_0292;Dbxref=GeneID:5711542;gbkey=Gene;locus_tag=Dshi_0292
NC_009952.1	RefSeq	CDS	289461	290186	.	-	0	ID=cds289;Name=YP_001531642.1;Parent=gene291;Note=KEGG: sil:SPO0491 hypothetical protein%3B no swissprot%3B TIGR02466 conserved hypothetical protein;Dbxref=Genbank:YP_001531642.1,GeneID:5711542;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531642.1;transl_table=11
NC_009952.1	RefSeq	gene	290274	290480	.	+	.	ID=gene292;Name=rpmC;Dbxref=GeneID:5711543;gbkey=Gene;gene=rpmC;locus_tag=Dshi_0293
NC_009952.1	RefSeq	CDS	290274	290480	.	+	0	ID=cds290;Name=YP_001531643.1;Parent=gene292;Note=one of the stabilizing components for the large ribosomal subunit;Dbxref=Genbank:YP_001531643.1,GeneID:5711543;gbkey=CDS;gene=rpmC;product=50S ribosomal protein L29;protein_id=YP_001531643.1;transl_table=11
NC_009952.1	RefSeq	gene	290493	290723	.	+	.	ID=gene293;Name=rpsQ;Dbxref=GeneID:5711544;gbkey=Gene;gene=rpsQ;locus_tag=Dshi_0294
NC_009952.1	RefSeq	CDS	290493	290723	.	+	0	ID=cds291;Name=YP_001531644.1;Parent=gene293;Note=PFAM: ribosomal protein S17 KEGG: sit:TM1040_0263 ribosomal protein S17;Dbxref=Genbank:YP_001531644.1,GeneID:5711544;gbkey=CDS;gene=rpsQ;product=30S ribosomal protein S17;protein_id=YP_001531644.1;transl_table=11
NC_009952.1	RefSeq	gene	290797	291165	.	+	.	ID=gene294;Name=rplN;Dbxref=GeneID:5711545;gbkey=Gene;gene=rplN;locus_tag=Dshi_0295
NC_009952.1	RefSeq	CDS	290797	291165	.	+	0	ID=cds292;Name=YP_001531645.1;Parent=gene294;Note=binds to the 23S rRNA between the centers for peptidyl transferase and GTPase;Dbxref=Genbank:YP_001531645.1,GeneID:5711545;gbkey=CDS;gene=rplN;product=50S ribosomal protein L14;protein_id=YP_001531645.1;transl_table=11
NC_009952.1	RefSeq	gene	291165	291470	.	+	.	ID=gene295;Name=rplX;Dbxref=GeneID:5711546;gbkey=Gene;gene=rplX;locus_tag=Dshi_0296
NC_009952.1	RefSeq	CDS	291165	291470	.	+	0	ID=cds293;Name=YP_001531646.1;Parent=gene295;Note=assembly initiator protein%3B binds to 5%27 end of 23S rRNA and nucleates assembly of the 50S%3B surrounds polypeptide exit tunnel;Dbxref=Genbank:YP_001531646.1,GeneID:5711546;gbkey=CDS;gene=rplX;product=50S ribosomal protein L24;protein_id=YP_001531646.1;transl_table=11
NC_009952.1	RefSeq	gene	291470	292033	.	+	.	ID=gene296;Name=rplE;Dbxref=GeneID:5711547;gbkey=Gene;gene=rplE;locus_tag=Dshi_0297
NC_009952.1	RefSeq	CDS	291470	292033	.	+	0	ID=cds294;Name=YP_001531647.1;Parent=gene296;Note=part of 50S and 5S%2FL5%2FL18%2FL25 subcomplex%3B contacts 5S rRNA and P site tRNA%3B forms a bridge to the 30S subunit in the ribosome by binding to S13;Dbxref=Genbank:YP_001531647.1,GeneID:5711547;gbkey=CDS;gene=rplE;product=50S ribosomal protein L5;protein_id=YP_001531647.1;transl_table=11
NC_009952.1	RefSeq	gene	292052	292357	.	+	.	ID=gene297;Name=rpsN;Dbxref=GeneID:5711548;gbkey=Gene;gene=rpsN;locus_tag=Dshi_0298
NC_009952.1	RefSeq	CDS	292052	292357	.	+	0	ID=cds295;Name=YP_001531648.1;Parent=gene297;Note=located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit%3B similar to what is observed with proteins L31 and L33%2C some proteins in this family contain CXXC motifs that are involved in zinc binding%3B if two copies are present in a genome%2C then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc%3B the proteins in this group do not appear to have the zinc-binding motif;Dbxref=Genbank:YP_001531648.1,GeneID:5711548;gbkey=CDS;gene=rpsN;product=30S ribosomal protein S14;protein_id=YP_001531648.1;transl_table=11
NC_009952.1	RefSeq	gene	292371	292763	.	+	.	ID=gene298;Name=rpsH;Dbxref=GeneID:5711549;gbkey=Gene;gene=rpsH;locus_tag=Dshi_0299
NC_009952.1	RefSeq	CDS	292371	292763	.	+	0	ID=cds296;Name=YP_001531649.1;Parent=gene298;Note=binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit;Dbxref=Genbank:YP_001531649.1,GeneID:5711549;gbkey=CDS;gene=rpsH;product=30S ribosomal protein S8;protein_id=YP_001531649.1;transl_table=11
NC_009952.1	RefSeq	gene	292776	293309	.	+	.	ID=gene299;Name=rplF;Dbxref=GeneID:5711550;gbkey=Gene;gene=rplF;locus_tag=Dshi_0300
NC_009952.1	RefSeq	CDS	292776	293309	.	+	0	ID=cds297;Name=YP_001531650.1;Parent=gene299;Note=ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein%3B RNA-binding appears to be in the C-terminal domain%3B mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain%3B it has been localized to a region between the base of the L7%2FL12 stalk and the central protuberance;Dbxref=Genbank:YP_001531650.1,GeneID:5711550;gbkey=CDS;gene=rplF;product=50S ribosomal protein L6;protein_id=YP_001531650.1;transl_table=11
NC_009952.1	RefSeq	gene	293321	293680	.	+	.	ID=gene300;Name=rplR;Dbxref=GeneID:5711551;gbkey=Gene;gene=rplR;locus_tag=Dshi_0301
NC_009952.1	RefSeq	CDS	293321	293680	.	+	0	ID=cds298;Name=YP_001531651.1;Parent=gene300;Note=binds 5S rRNA along with protein L5 and L25;Dbxref=Genbank:YP_001531651.1,GeneID:5711551;gbkey=CDS;gene=rplR;product=50S ribosomal protein L18;protein_id=YP_001531651.1;transl_table=11
NC_009952.1	RefSeq	gene	293839	294414	.	+	.	ID=gene301;Name=rpsE;Dbxref=GeneID:5711552;gbkey=Gene;gene=rpsE;locus_tag=Dshi_0302
NC_009952.1	RefSeq	CDS	293839	294414	.	+	0	ID=cds299;Name=YP_001531652.1;Parent=gene301;Note=located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body%3B contacts S4 and S8%3B with S4 and S12 plays a role in translational accuracy%3B mutations in this gene result in spectinomycin resistance;Dbxref=Genbank:YP_001531652.1,GeneID:5711552;gbkey=CDS;gene=rpsE;product=30S ribosomal protein S5;protein_id=YP_001531652.1;transl_table=11
NC_009952.1	RefSeq	gene	294427	294615	.	+	.	ID=gene302;Name=rpmD;Dbxref=GeneID:5711553;gbkey=Gene;gene=rpmD;locus_tag=Dshi_0303
NC_009952.1	RefSeq	CDS	294427	294615	.	+	0	ID=cds300;Name=YP_001531653.1;Parent=gene302;Note=L30 binds domain II of the 23S rRNA and the 5S rRNA%3B similar to eukaryotic protein L7;Dbxref=Genbank:YP_001531653.1,GeneID:5711553;gbkey=CDS;gene=rpmD;product=50S ribosomal protein L30;protein_id=YP_001531653.1;transl_table=11
NC_009952.1	RefSeq	gene	294758	295231	.	+	.	ID=gene303;Name=rplO;Dbxref=GeneID:5711554;gbkey=Gene;gene=rplO;locus_tag=Dshi_0304
NC_009952.1	RefSeq	CDS	294758	295231	.	+	0	ID=cds301;Name=YP_001531654.1;Parent=gene303;Note=late assembly protein;Dbxref=Genbank:YP_001531654.1,GeneID:5711554;gbkey=CDS;gene=rplO;product=50S ribosomal protein L15;protein_id=YP_001531654.1;transl_table=11
NC_009952.1	RefSeq	gene	295343	296704	.	+	.	ID=gene304;Name=secY;Dbxref=GeneID:5711555;gbkey=Gene;gene=secY;locus_tag=Dshi_0305
NC_009952.1	RefSeq	CDS	295343	296704	.	+	0	ID=cds302;Name=YP_001531655.1;Parent=gene304;Note=forms heterotrimeric complex in the membrane%3B in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG%3B the SecG subunit is not essential%3B in bacteria translocation is driven via the SecA ATPase;Dbxref=Genbank:YP_001531655.1,GeneID:5711555;gbkey=CDS;gene=secY;product=preprotein translocase subunit SecY;protein_id=YP_001531655.1;transl_table=11
NC_009952.1	RefSeq	gene	296701	297342	.	+	.	ID=gene305;Name=adk;Dbxref=GeneID:5711556;gbkey=Gene;gene=adk;locus_tag=Dshi_0306
NC_009952.1	RefSeq	CDS	296701	297342	.	+	0	ID=cds303;Name=YP_001531656.1;Parent=gene305;Note=essential enzyme that recycles AMP in active cells%3B converts ATP and AMP to two molecules of ADP;Dbxref=Genbank:YP_001531656.1,GeneID:5711556;gbkey=CDS;gene=adk;product=adenylate kinase;protein_id=YP_001531656.1;transl_table=11
NC_009952.1	RefSeq	gene	297504	297947	.	+	.	ID=gene306;Name=rpsM;Dbxref=GeneID:5711557;gbkey=Gene;gene=rpsM;locus_tag=Dshi_0307
NC_009952.1	RefSeq	CDS	297504	297947	.	+	0	ID=cds304;Name=YP_001531657.1;Parent=gene306;Note=PFAM: ribosomal protein S13 KEGG: sil:SPO0509 ribosomal protein S13;Dbxref=Genbank:YP_001531657.1,GeneID:5711557;gbkey=CDS;gene=rpsM;product=30S ribosomal protein S13;protein_id=YP_001531657.1;transl_table=11
NC_009952.1	RefSeq	gene	297963	298352	.	+	.	ID=gene307;Name=rpsK;Dbxref=GeneID:5711558;gbkey=Gene;gene=rpsK;locus_tag=Dshi_0308
NC_009952.1	RefSeq	CDS	297963	298352	.	+	0	ID=cds305;Name=YP_001531658.1;Parent=gene307;Note=located on the platform of the 30S subunit%2C it bridges several disparate RNA helices of the 16S rRNA%3B forms part of the Shine-Dalgarno cleft in the 70S ribosome%3B interacts with S7 and S18 and IF-3;Dbxref=Genbank:YP_001531658.1,GeneID:5711558;gbkey=CDS;gene=rpsK;product=30S ribosomal protein S11;protein_id=YP_001531658.1;transl_table=11
NC_009952.1	RefSeq	gene	298455	299486	.	+	.	ID=gene308;Name=rpoA;Dbxref=GeneID:5711559;gbkey=Gene;gene=rpoA;locus_tag=Dshi_0309
NC_009952.1	RefSeq	CDS	298455	299486	.	+	0	ID=cds306;Name=YP_001531659.1;Parent=gene308;Note=catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme;Dbxref=Genbank:YP_001531659.1,GeneID:5711559;gbkey=CDS;gene=rpoA;product=DNA-directed RNA polymerase subunit alpha;protein_id=YP_001531659.1;transl_table=11
NC_009952.1	RefSeq	gene	299605	300021	.	+	.	ID=gene309;Name=rplQ;Dbxref=GeneID:5711560;gbkey=Gene;gene=rplQ;locus_tag=Dshi_0310
NC_009952.1	RefSeq	CDS	299605	300021	.	+	0	ID=cds307;Name=YP_001531660.1;Parent=gene309;Note=is a component of the macrolide binding site in the peptidyl transferase center;Dbxref=Genbank:YP_001531660.1,GeneID:5711560;gbkey=CDS;gene=rplQ;product=50S ribosomal protein L17;protein_id=YP_001531660.1;transl_table=11
NC_009952.1	RefSeq	gene	300364	300975	.	+	.	ID=gene310;Name=luxR1;Dbxref=GeneID:5711561;gbkey=Gene;gene=luxR1;locus_tag=Dshi_0311
NC_009952.1	RefSeq	CDS	300364	300975	.	+	0	ID=cds308;Name=YP_001531661.1;Parent=gene310;Note=PFAM: regulatory protein LuxR%3B Autoinducer-binding domain protein KEGG: pde:Pden_0786 response regulator receiver protein%2C Autoinducer binding domain pfam03472%2C HTH-LuxR domain pfam00196%3B LuxR family;Dbxref=Genbank:YP_001531661.1,GeneID:5711561;gbkey=CDS;gene=luxR1;product=transcriptional regulator;protein_id=YP_001531661.1;transl_table=11
NC_009952.1	RefSeq	gene	301032	301619	.	+	.	ID=gene311;Name=luxI;Dbxref=GeneID:5711562;gbkey=Gene;gene=luxI;locus_tag=Dshi_0312
NC_009952.1	RefSeq	CDS	301032	301619	.	+	0	ID=cds309;Name=YP_001531662.1;Parent=gene311;Note=KEGG: pde:Pden_0787 N-acyl-L-homoserine lactone synthetase-like;Dbxref=Genbank:YP_001531662.1,GeneID:5711562;gbkey=CDS;gene=luxI;product=N-acyl-L-homoserine lactone synthetase-like protein;protein_id=YP_001531662.1;transl_table=11
NC_009952.1	RefSeq	gene	301799	303109	.	+	.	ID=gene312;Name=Dshi_0313;Dbxref=GeneID:5711563;gbkey=Gene;locus_tag=Dshi_0313
NC_009952.1	RefSeq	CDS	301799	303109	.	+	0	ID=cds310;Name=YP_001531663.1;Parent=gene312;Note=PFAM: magnesium chelatase ChlI subunit%3B AAA ATPase central domain protein%3B ATPase associated with various cellular activities AAA_5 SMART: AAA ATPase KEGG: sil:SPO0515 ATPase%2C AAA family;Dbxref=Genbank:YP_001531663.1,GeneID:5711563;gbkey=CDS;product=recombination factor protein RarA;protein_id=YP_001531663.1;transl_table=11
NC_009952.1	RefSeq	gene	303192	303521	.	+	.	ID=gene313;Name=Dshi_0314;Dbxref=GeneID:5711564;gbkey=Gene;locus_tag=Dshi_0314
NC_009952.1	RefSeq	CDS	303192	303521	.	+	0	ID=cds311;Name=YP_001531664.1;Parent=gene313;Note=PFAM: Camphor resistance CrcB protein KEGG: rde:RD1_1440 CrcB-like protein%3B COG0239 Integral membrane protein possibly involved in chromosome condensation;Dbxref=Genbank:YP_001531664.1,GeneID:5711564;gbkey=CDS;product=integral membrane protein;protein_id=YP_001531664.1;transl_table=11
NC_009952.1	RefSeq	gene	303518	304564	.	+	.	ID=gene314;Name=rluC;Dbxref=GeneID:5711565;gbkey=Gene;gene=rluC;locus_tag=Dshi_0315
NC_009952.1	RefSeq	CDS	303518	304564	.	+	0	ID=cds312;Name=YP_001531665.1;Parent=gene314;Note=high Ref YP hit to Pseudouridine synthase%2C RluD from Jannaschia sp. CCS1 and middle swissprot hit to Ribosomal large subunit pseudouridine synthase C from Pasteurella multocida%3B RNA binding and rluC domain %28PF00849%29;Dbxref=Genbank:YP_001531665.1,GeneID:5711565;gbkey=CDS;gene=rluC;product=ribosomal large subunit pseudouridine synthase C;protein_id=YP_001531665.1;transl_table=11
NC_009952.1	RefSeq	gene	304561	305241	.	+	.	ID=gene315;Name=gph;Dbxref=GeneID:5711566;gbkey=Gene;gene=gph;locus_tag=Dshi_0316
NC_009952.1	RefSeq	CDS	304561	305241	.	+	0	ID=cds313;Name=YP_001531666.1;Parent=gene315;Note=TIGRFAM: HAD-superfamily hydrolase%2C subfamily IA%2C variant 3%3B HAD-superfamily hydrolase%2C subfamily IA%2C variant 1 PFAM: Haloacid dehalogenase domain protein hydrolase KEGG: rde:RD1_1442 hydrolase%2C putative%3B PGPase;Dbxref=Genbank:YP_001531666.1,GeneID:5711566;gbkey=CDS;gene=gph;product=phosphoglycolate phosphatase;protein_id=YP_001531666.1;transl_table=11
NC_009952.1	RefSeq	gene	305238	305942	.	+	.	ID=gene316;Name=gph;Dbxref=GeneID:5711567;gbkey=Gene;gene=gph;locus_tag=Dshi_0317
NC_009952.1	RefSeq	CDS	305238	305942	.	+	0	ID=cds314;Name=YP_001531667.1;Parent=gene316;Note=PFAM: ATP12 ATPase KEGG: rsp:RSP_1746 hypothetical protein%3B good Ref hits to ATP12 proteins%2C also middle swissprot hit toATP synthase mitochondrial F1 complex assembly factor 2%2C mitochondrial precursor %28ATP12 homolog%29 from Homo sapiens;Dbxref=Genbank:YP_001531667.1,GeneID:5711567;gbkey=CDS;product=ATP12 chaperone protein;protein_id=YP_001531667.1;transl_table=11
NC_009952.1	RefSeq	gene	306292	307308	.	+	.	ID=gene317;Name=bztA;Dbxref=GeneID:5711568;gbkey=Gene;gene=bztA;locus_tag=Dshi_0318
NC_009952.1	RefSeq	CDS	306292	307308	.	+	0	ID=cds315;Name=YP_001531668.1;Parent=gene317;Note=TIGRFAM: cationic amino acid ABC transporter%2C periplasmic binding protein SMART: extracellular solute-binding protein family 3 KEGG: sil:SPO0519 glutamate%2Fglutamine%2Faspartate%2Fasparagine ABC transporter%2C periplasmic substrate-binding protein%3B high swissprot hit to Glutamate%2Fglutamine%2Faspartate%2Fasparagine-binding protein bztA from Rhodobacter capsulatus%3B RBS site AGGAT;Dbxref=Genbank:YP_001531668.1,GeneID:5711568;gbkey=CDS;gene=bztA;product=glutamate%2Fglutamine%2Faspartate%2Fasparagine ABC transporter;protein_id=YP_001531668.1;transl_table=11
NC_009952.1	RefSeq	gene	307429	308664	.	+	.	ID=gene318;Name=bztB;Dbxref=GeneID:5711569;gbkey=Gene;gene=bztB;locus_tag=Dshi_0319
NC_009952.1	RefSeq	CDS	307429	308664	.	+	0	ID=cds316;Name=YP_001531669.1;Parent=gene318;Note=TIGRFAM: polar amino acid ABC transporter%2C inner membrane subunit PFAM: binding-protein-dependent transport systems inner membrane component KEGG: rde:RD1_1445 glutamate%2Fglutamine%2Faspartate%2Fasparagine transport system permease protein%2C high swissprot;Dbxref=Genbank:YP_001531669.1,GeneID:5711569;gbkey=CDS;gene=bztB;product=glutamate%2Fglutamine%2Faspartate%2Fasparagine ABC transport system permease;protein_id=YP_001531669.1;transl_table=11
NC_009952.1	RefSeq	gene	308666	309964	.	+	.	ID=gene319;Name=bztC;Dbxref=GeneID:5711570;gbkey=Gene;gene=bztC;locus_tag=Dshi_0320
NC_009952.1	RefSeq	CDS	308666	309964	.	+	0	ID=cds317;Name=YP_001531670.1;Parent=gene319;Note=TIGRFAM: polar amino acid ABC transporter%2C inner membrane subunit PFAM: binding-protein-dependent transport systems inner membrane component KEGG: rde:RD1_1446 amino acid ABC transporter%2C permease protein%2C high swissprot to Glutamate%2Fglutamine%2Faspartate%2Fasparagine transport system permease from Rhodobacter capsulatus;Dbxref=Genbank:YP_001531670.1,GeneID:5711570;gbkey=CDS;gene=bztC;product=glutamate%2Fglutamine%2Faspartate%2Fasparagine ABC transport system permease;protein_id=YP_001531670.1;transl_table=11
NC_009952.1	RefSeq	gene	309980	310756	.	+	.	ID=gene320;Name=bztD;Dbxref=GeneID:5711571;gbkey=Gene;gene=bztD;locus_tag=Dshi_0321
NC_009952.1	RefSeq	CDS	309980	310756	.	+	0	ID=cds318;Name=YP_001531671.1;Parent=gene320;Note=PFAM: ABC transporter related SMART: AAA ATPase KEGG: jan:Jann_0630 ABC transporter related%2C high swissprot hit to Glutamate%2Fglutamine%2Faspartate%2Fasparagine transport ATP-binding from Rhodobacter capsulatus;Dbxref=Genbank:YP_001531671.1,GeneID:5711571;gbkey=CDS;gene=bztD;product=glutamate%2Fglutamine%2Faspartate%2Fasparagine ABC transport ATP-binding;protein_id=YP_001531671.1;transl_table=11
NC_009952.1	RefSeq	gene	310800	311300	.	-	.	ID=gene321;Name=Dshi_0322;Dbxref=GeneID:5711572;gbkey=Gene;locus_tag=Dshi_0322
NC_009952.1	RefSeq	CDS	310800	311300	.	-	0	ID=cds319;Name=YP_001531672.1;Parent=gene321;Note=PFAM: Phosphoglycerate mutase KEGG: sil:SPO0523 phosphoglycerate mutase family protein%3B COG2062 Phosphohistidine phosphatase SixA%3B best Ref hits to hypothetical proteins;Dbxref=Genbank:YP_001531672.1,GeneID:5711572;gbkey=CDS;product=putative phosphatase;protein_id=YP_001531672.1;transl_table=11
NC_009952.1	RefSeq	gene	311297	311920	.	-	.	ID=gene322;Name=Dshi_0323;Dbxref=GeneID:5711573;gbkey=Gene;locus_tag=Dshi_0323
NC_009952.1	RefSeq	CDS	311297	311920	.	-	0	ID=cds320;Name=YP_001531673.1;Parent=gene322;Note=KEGG: rde:RD1_1449 hypothetical protein%2C no significant swissprot%3B no conserved domains detected;Dbxref=Genbank:YP_001531673.1,GeneID:5711573;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531673.1;transl_table=11
NC_009952.1	RefSeq	gene	311973	312836	.	-	.	ID=gene323;Name=argB;Dbxref=GeneID:5711574;gbkey=Gene;gene=argB;locus_tag=Dshi_0324
NC_009952.1	RefSeq	CDS	311973	312836	.	-	0	ID=cds321;Name=YP_001531674.1;Parent=gene323;Note=catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate;Dbxref=Genbank:YP_001531674.1,GeneID:5711574;gbkey=CDS;gene=argB;product=acetylglutamate kinase;protein_id=YP_001531674.1;transl_table=11
NC_009952.1	RefSeq	gene	312924	313655	.	+	.	ID=gene324;Name=fabG3;Dbxref=GeneID:5711575;gbkey=Gene;gene=fabG3;locus_tag=Dshi_0325
NC_009952.1	RefSeq	CDS	312924	313655	.	+	0	ID=cds322;Name=YP_001531675.1;Parent=gene324;Note=PFAM: short-chain dehydrogenase%2Freductase SDR %2C good swissprot hit to Protein fixR from Bradyrhizobium japonicum%2C fabG NCBI domain%2C good Ref ZP hit toShort-chain alcohol dehydrogenase from Rhodobacterales bacterium HTCC2150;Dbxref=Genbank:YP_001531675.1,GeneID:5711575;gbkey=CDS;gene=fabG3;product=3-ketoacyl-ACP reductase;protein_id=YP_001531675.1;transl_table=11
NC_009952.1	RefSeq	gene	313718	314371	.	-	.	ID=gene325;Name=engB;Dbxref=GeneID:5711576;gbkey=Gene;gene=engB;locus_tag=Dshi_0326
NC_009952.1	RefSeq	CDS	313718	314371	.	-	0	ID=cds323;Name=YP_001531676.1;Parent=gene325;Note=binds guanine nucleotides%3B in Escherichia coli depletion results in defective cell division and filamentation%3B in Bacillus subtilis this gene is essential;Dbxref=Genbank:YP_001531676.1,GeneID:5711576;gbkey=CDS;gene=engB;product=ribosome biogenesis GTP-binding protein YsxC;protein_id=YP_001531676.1;transl_table=11
NC_009952.1	RefSeq	gene	314368	315117	.	-	.	ID=gene326;Name=mosc;Dbxref=GeneID:5711577;gbkey=Gene;gene=mosc;locus_tag=Dshi_0327
NC_009952.1	RefSeq	CDS	314368	315117	.	-	0	ID=cds324;Name=YP_001531677.1;Parent=gene326;Note=PFAM: MOSC domain containing protein%3B MOSC domain protein beta barrel domain protein KEGG: sil:SPO0531 MOSC domain protein%2C swissprot hit to Molybdenum cofactor sulfurase from Mus musculus;Dbxref=Genbank:YP_001531677.1,GeneID:5711577;gbkey=CDS;gene=mosc;product=MOSC domain-containing protein;protein_id=YP_001531677.1;transl_table=11
NC_009952.1	RefSeq	gene	315114	316934	.	-	.	ID=gene327;Name=yidC;Dbxref=GeneID:5711578;gbkey=Gene;gene=yidC;locus_tag=Dshi_0328
NC_009952.1	RefSeq	CDS	315114	316934	.	-	0	ID=cds325;Name=YP_001531678.1;Parent=gene327;Note=functions to insert inner membrane proteins into the IM in Escherichia coli%3B interacts with transmembrane segments%3B functions in both Sec-dependent and -independent membrane insertion%3B similar to Oxa1p in mitochondria;Dbxref=Genbank:YP_001531678.1,GeneID:5711578;gbkey=CDS;gene=yidC;product=putative inner membrane protein translocase component YidC;protein_id=YP_001531678.1;transl_table=11
NC_009952.1	RefSeq	gene	317056	318645	.	-	.	ID=gene328;Name=ydaM;Dbxref=GeneID:5711579;gbkey=Gene;gene=ydaM;locus_tag=Dshi_0329
NC_009952.1	RefSeq	CDS	317056	318645	.	-	0	ID=cds326;Name=YP_001531679.1;Parent=gene328;Note=TIGRFAM: diguanylate cyclase PFAM: GGDEF domain containing protein%3B EAL domain protein KEGG: sil:SPO0533 diguanylate cyclase%2C putative;Dbxref=Genbank:YP_001531679.1,GeneID:5711579;gbkey=CDS;gene=ydaM;product=diguanylate cyclase%2Fphosphodiesterase;protein_id=YP_001531679.1;transl_table=11
NC_009952.1	RefSeq	gene	318693	319556	.	-	.	ID=gene329;Name=ydaO;Dbxref=GeneID:5711580;gbkey=Gene;gene=ydaO;locus_tag=Dshi_0330
NC_009952.1	RefSeq	CDS	318693	319556	.	-	0	ID=cds327;Name=YP_001531680.1;Parent=gene329;Note=TtcA%3B YdaO%3B catalyzes the thiolation of cytosine 32 in specific tRNAs;Dbxref=Genbank:YP_001531680.1,GeneID:5711580;gbkey=CDS;gene=ydaO;product=C32 tRNA thiolase;protein_id=YP_001531680.1;transl_table=11
NC_009952.1	RefSeq	gene	319728	319803	.	+	.	ID=gene330;Name=Dshi_6003;Dbxref=GeneID:5711581;gbkey=Gene;locus_tag=Dshi_6003
NC_009952.1	RefSeq	tRNA	319728	319803	.	+	.	ID=rna2;Parent=gene330;Dbxref=GeneID:5711581;codons=39;gbkey=tRNA;product=tRNA-Thr
NC_009952.1	RefSeq	exon	319728	319803	.	+	.	ID=id3;Parent=rna2;Dbxref=GeneID:5711581;codons=39;gbkey=tRNA;product=tRNA-Thr
NC_009952.1	RefSeq	gene	319810	320031	.	-	.	ID=gene331;Name=Dshi_0331;Dbxref=GeneID:5711582;gbkey=Gene;locus_tag=Dshi_0331
NC_009952.1	RefSeq	CDS	319810	320031	.	-	0	ID=cds328;Name=YP_001531681.1;Parent=gene331;Note=PFAM: protein of unknown function DUF37%3B middle swissprot hit to UPF0161 protein RD1_1458 from Roseobacter denitrificans OCh 114 and middle Ref ZP hit to hypothetical protein SKA53_00415 from Loktanella vestfoldensis SKA53;Dbxref=Genbank:YP_001531681.1,GeneID:5711582;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531681.1;transl_table=11
NC_009952.1	RefSeq	gene	320028	320417	.	-	.	ID=gene332;Name=rnpA;Dbxref=GeneID:5711583;gbkey=Gene;gene=rnpA;locus_tag=Dshi_0332
NC_009952.1	RefSeq	CDS	320028	320417	.	-	0	ID=cds329;Name=YP_001531682.1;Parent=gene332;Note=TIGRFAM: ribonuclease P protein component PFAM: ribonuclease P protein %2C middle swissprot hit to Ribonuclease P protein component from Silicibacter pomeroyi and middle Ref ZP hit toribonuclease P protein component from Roseobacter sp. CCS2;Dbxref=Genbank:YP_001531682.1,GeneID:5711583;gbkey=CDS;gene=rnpA;product=ribonuclease P protein component;protein_id=YP_001531682.1;transl_table=11
NC_009952.1	RefSeq	gene	320480	320614	.	-	.	ID=gene333;Name=rpmH;Dbxref=GeneID:5711584;gbkey=Gene;gene=rpmH;locus_tag=Dshi_0333
NC_009952.1	RefSeq	CDS	320480	320614	.	-	0	ID=cds330;Name=YP_001531683.1;Parent=gene333;Note=in Escherichia coli transcription of this gene is enhanced by polyamines;Dbxref=Genbank:YP_001531683.1,GeneID:5711584;gbkey=CDS;gene=rpmH;product=50S ribosomal protein L34;protein_id=YP_001531683.1;transl_table=11
NC_009952.1	RefSeq	gene	320770	320846	.	-	.	ID=gene334;Name=Dshi_6004;Dbxref=GeneID:5711585;gbkey=Gene;locus_tag=Dshi_6004
NC_009952.1	RefSeq	tRNA	320770	320846	.	-	.	ID=rna3;Parent=gene334;Dbxref=GeneID:5711585;codons=28;gbkey=tRNA;product=tRNA-Arg
NC_009952.1	RefSeq	exon	320770	320846	.	-	.	ID=id4;Parent=rna3;Dbxref=GeneID:5711585;codons=28;gbkey=tRNA;product=tRNA-Arg
NC_009952.1	RefSeq	gene	320898	322301	.	-	.	ID=gene335;Name=Dshi_0334;Dbxref=GeneID:5711586;gbkey=Gene;locus_tag=Dshi_0334
NC_009952.1	RefSeq	CDS	320898	322301	.	-	0	ID=cds331;Name=YP_001531684.1;Parent=gene335;Note=PFAM: ATP-binding region ATPase domain protein%3B histidine kinase HAMP region domain protein%3B histidine kinase A domain protein%3B low swissprot hit to Sensor protein zraS %28a membrane-associated protein kinase that phosphorylates zraR in response to high concentrations of zinc or lead in the medium%29 from Salmonella typhimurium and high Ref ZP hit to periplasmic sensor signal transduction histidine kinase from R;Dbxref=Genbank:YP_001531684.1,GeneID:5711586;gbkey=CDS;product=integral membrane sensor signal transduction histidine kinase;protein_id=YP_001531684.1;transl_table=11
NC_009952.1	RefSeq	gene	322338	323750	.	-	.	ID=gene336;Name=merA;Dbxref=GeneID:5711587;gbkey=Gene;gene=merA;locus_tag=Dshi_0335
NC_009952.1	RefSeq	CDS	322338	323750	.	-	0	ID=cds332;Name=YP_001531685.1;Parent=gene336;Note=PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase%3B pyridine nucleotide-disulphide oxidoreductase dimerisation region%3B high swissprot to Mercuric reductase from Bacillus cereus and high Ref ZP hit to mercuric reductase%2C putative from Roseovarius sp. TM1035;Dbxref=Genbank:YP_001531685.1,GeneID:5711587;gbkey=CDS;gene=merA;product=putative mercuric reductase MerA;protein_id=YP_001531685.1;transl_table=11
NC_009952.1	RefSeq	gene	323755	324486	.	-	.	ID=gene337;Name=Dshi_0336;Dbxref=GeneID:5711245;gbkey=Gene;locus_tag=Dshi_0336
NC_009952.1	RefSeq	CDS	323755	324486	.	-	0	ID=cds333;Name=YP_001531686.1;Parent=gene337;Note=PFAM: SNARE associated Golgi protein KEGG: rde:RD1_1463 mercuric reductase%3B the mercuric reductase MerA also comprises a SNARE associated Golgi protein motif%2C low swissprot hit to UPF0043 membrane protein ydjX from Escherichia coli K12 and good Ref ZP hit to hypothetical protein RCCS2_07124 from Roseobacter sp. CCS2%3B also good Ref YP hit to mercuric reductase from Roseobacter denitrificans OCh 114%3B possible Gene arrangement with Dshi_0335;Dbxref=Genbank:YP_001531686.1,GeneID:5711245;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531686.1;transl_table=11
NC_009952.1	RefSeq	gene	325428	326237	.	-	.	ID=gene338;Name=parA2;Dbxref=GeneID:5711246;gbkey=Gene;gene=parA2;locus_tag=Dshi_0337
NC_009952.1	RefSeq	CDS	325428	326237	.	-	0	ID=cds334;Name=YP_001531687.1;Parent=gene338;Note=PFAM: ATPase MipZ KEGG: jan:Jann_0738 ATPases involved in chromosome partitioning-like%3Balternative gene name: mipZ;Dbxref=Genbank:YP_001531687.1,GeneID:5711246;gbkey=CDS;gene=parA2;product=chromosome partitioning ATPase;protein_id=YP_001531687.1;transl_table=11
NC_009952.1	RefSeq	gene	326619	327452	.	+	.	ID=gene339;Name=Dshi_0338;Dbxref=GeneID:5711247;gbkey=Gene;locus_tag=Dshi_0338
NC_009952.1	RefSeq	CDS	326619	327452	.	+	0	ID=cds335;Name=YP_001531688.1;Parent=gene339;Note=PFAM: beta-lactamase domain protein KEGG: sil:SPO2170 metallo-beta-lactamase family protein%3B NCBI conserved domains:GloB%2C Zn-dependent hydrolases%2C including glyoxylases%3B no significant swissprot;Dbxref=Genbank:YP_001531688.1,GeneID:5711247;gbkey=CDS;product=metallo-beta-lactamase family protein;protein_id=YP_001531688.1;transl_table=11
NC_009952.1	RefSeq	gene	327660	328538	.	-	.	ID=gene340;Name=Dshi_0339;Dbxref=GeneID:5711248;gbkey=Gene;locus_tag=Dshi_0339
NC_009952.1	RefSeq	CDS	327660	328538	.	-	0	ID=cds336;Name=YP_001531689.1;Parent=gene340;Note=PFAM: protein of unknown function DUF849 KEGG: bur:Bcep18194_B0612 protein of unknown function DUF849%2C no significant swissprot;Dbxref=Genbank:YP_001531689.1,GeneID:5711248;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531689.1;transl_table=11
NC_009952.1	RefSeq	gene	328656	328877	.	-	.	ID=gene341;Name=rpmE;Dbxref=GeneID:5711249;gbkey=Gene;gene=rpmE;locus_tag=Dshi_0340
NC_009952.1	RefSeq	CDS	328656	328877	.	-	0	ID=cds337;Name=YP_001531690.1;Parent=gene341;Note=RpmE%3B there appears to be two types of ribosomal proteins L31 in bacterial genomes%3B some contain a CxxC motif while others do not%3B Bacillus subtilis has both types%3B the proteins in this cluster do not have the CXXC motif%3B RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth%3B expression of ytiA is controlled by a zinc-specific transcriptional repressor%3B RpmE contains one zinc ion and a CxxC motif is responsible for this binding%3B forms an RNP particle along with proteins L5%2C L18%2C and L25 and 5S rRNA%3B found crosslinked to L2 and L25 and EF-G%3B may be near the peptidyltransferase site of the 50S ribosome;Dbxref=Genbank:YP_001531690.1,GeneID:5711249;gbkey=CDS;gene=rpmE;product=50S ribosomal protein L31;protein_id=YP_001531690.1;transl_table=11
NC_009952.1	RefSeq	gene	328889	329263	.	-	.	ID=gene342;Name=rplS;Dbxref=GeneID:5711250;gbkey=Gene;gene=rplS;locus_tag=Dshi_0341
NC_009952.1	RefSeq	CDS	328889	329263	.	-	0	ID=cds338;Name=YP_001531691.1;Parent=gene342;Note=this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site;Dbxref=Genbank:YP_001531691.1,GeneID:5711250;gbkey=CDS;gene=rplS;product=50S ribosomal protein L19;protein_id=YP_001531691.1;transl_table=11
NC_009952.1	RefSeq	gene	329524	330321	.	-	.	ID=gene343;Name=trmD;Dbxref=GeneID:5711251;gbkey=Gene;gene=trmD;locus_tag=Dshi_0342
NC_009952.1	RefSeq	CDS	329524	330321	.	-	0	ID=cds339;Name=YP_001531692.1;Parent=gene343;Note=KEGG: rsq:Rsph17025_0184 tRNA %28guanine-N1%29-methyltransferase TIGRFAM: tRNA %28guanine-N1%29-methyltransferase PFAM: tRNA %28guanine-N1-%29-methyltransferase;Dbxref=Genbank:YP_001531692.1,GeneID:5711251;gbkey=CDS;gene=trmD;product=tRNA %28guanine-N1%29-methyltransferase;protein_id=YP_001531692.1;transl_table=11
NC_009952.1	RefSeq	gene	330412	331401	.	+	.	ID=gene344;Name=aph;Dbxref=GeneID:5711252;gbkey=Gene;gene=aph;locus_tag=Dshi_0343
NC_009952.1	RefSeq	CDS	330412	331401	.	+	0	ID=cds340;Name=YP_001531693.1;Parent=gene344;Note=PFAM: aminoglycoside phosphotransferase KEGG: sit:TM1040_2610 hypothetical protein%3B no significant swissprot hit;Dbxref=Genbank:YP_001531693.1,GeneID:5711252;gbkey=CDS;gene=aph;product=aminoglycoside phosphotransferase;protein_id=YP_001531693.1;transl_table=11
NC_009952.1	RefSeq	gene	331421	331921	.	-	.	ID=gene345;Name=rimM;Dbxref=GeneID:5711253;gbkey=Gene;gene=rimM;locus_tag=Dshi_0344
NC_009952.1	RefSeq	CDS	331421	331921	.	-	0	ID=cds341;Name=YP_001531694.1;Parent=gene345;Note=Essential for efficient processing of 16S rRNA;Dbxref=Genbank:YP_001531694.1,GeneID:5711253;gbkey=CDS;gene=rimM;product=16S rRNA-processing protein RimM;protein_id=YP_001531694.1;transl_table=11
NC_009952.1	RefSeq	gene	331918	332064	.	-	.	ID=gene346;Name=rimM;Dbxref=GeneID:5711254;gbkey=Gene;gene=rimM;locus_tag=Dshi_0345
NC_009952.1	RefSeq	CDS	331918	332064	.	-	0	ID=cds342;Name=YP_001531695.1;Parent=gene346;Note=no significant BLAST hits%2C unsure prosite hit to ribosomal protein S2;Dbxref=Genbank:YP_001531695.1,GeneID:5711254;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531695.1;transl_table=11
NC_009952.1	RefSeq	gene	332071	332535	.	-	.	ID=gene347;Name=Dshi_0346;Dbxref=GeneID:5711255;gbkey=Gene;locus_tag=Dshi_0346
NC_009952.1	RefSeq	CDS	332071	332535	.	-	0	ID=cds343;Name=YP_001531696.1;Parent=gene347;Note=PFAM: protein of unknown function DUF55 KEGG: mjl:Mjls_0045 protein of unknown function DUF55%2C bad swissprot hit to UPF0310 protein in gntR 5region fromBacillus licheniformis%3B bad Ref ZP hit to UPF0310 protein in gntR 5region fromBacillus licheniformis;Dbxref=Genbank:YP_001531696.1,GeneID:5711255;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531696.1;transl_table=11
NC_009952.1	RefSeq	gene	332537	333166	.	-	.	ID=gene348;Name=bluB;Dbxref=GeneID:5711256;gbkey=Gene;gene=bluB;locus_tag=Dshi_0347
NC_009952.1	RefSeq	CDS	332537	333166	.	-	0	ID=cds344;Name=YP_001531697.1;Parent=gene348;Note=KEGG: sil:SPO3254 cobalamin biosynthesis protein BluB TIGRFAM: cob%28II%29yrinic acid a%2Cc-diamide reductase PFAM: nitroreductase%3B good swissprot hit toPutative cob%28II%29yrinic acid a%2Cc-diamide reductase from Rhodobacter capsulatus;Dbxref=Genbank:YP_001531697.1,GeneID:5711256;gbkey=CDS;gene=bluB;product=cob%28II%29yrinic acid a%2Cc-diamide reductase;protein_id=YP_001531697.1;transl_table=11
NC_009952.1	RefSeq	gene	333195	333587	.	-	.	ID=gene349;Name=rpsP;Dbxref=GeneID:5711257;gbkey=Gene;gene=rpsP;locus_tag=Dshi_0348
NC_009952.1	RefSeq	CDS	333195	333587	.	-	0	ID=cds345;Name=YP_001531698.1;Parent=gene349;Note=binds to lower part of 30S body where it stabilizes two domains%3B required for efficient assembly of 30S%3B in Escherichia coli this protein has nuclease activity;Dbxref=Genbank:YP_001531698.1,GeneID:5711257;gbkey=CDS;gene=rpsP;product=30S ribosomal protein S16;protein_id=YP_001531698.1;transl_table=11
NC_009952.1	RefSeq	gene	333629	333925	.	-	.	ID=gene350;Name=pheA1;Dbxref=GeneID:5711258;gbkey=Gene;gene=pheA1;locus_tag=Dshi_0349
NC_009952.1	RefSeq	CDS	333629	333925	.	-	0	ID=cds346;Name=YP_001531699.1;Parent=gene350;Note=catalyzes the interconversion of chorismate to prephenate;Dbxref=Genbank:YP_001531699.1,GeneID:5711258;gbkey=CDS;gene=pheA1;product=chorismate mutase;protein_id=YP_001531699.1;transl_table=11
NC_009952.1	RefSeq	gene	334046	334651	.	-	.	ID=gene351;Name=Dshi_0350;Dbxref=GeneID:5711259;gbkey=Gene;locus_tag=Dshi_0350
NC_009952.1	RefSeq	CDS	334046	334651	.	-	0	ID=cds347;Name=YP_001531700.1;Parent=gene351;Note=KEGG: sit:TM1040_2605 hypothetical protein%2C no significant swissprot%2C good Ref YP hit to acetyltransferase%2C GNAT family from Roseobacter denitrificans OCh 114%2C NCBI conserved domains: rimL;Dbxref=Genbank:YP_001531700.1,GeneID:5711259;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531700.1;transl_table=11
NC_009952.1	RefSeq	gene	334651	335166	.	-	.	ID=gene352;Name=Dshi_0351;Dbxref=GeneID:5711260;gbkey=Gene;locus_tag=Dshi_0351
NC_009952.1	RefSeq	CDS	334651	335166	.	-	0	ID=cds348;Name=YP_001531701.1;Parent=gene352;Note=PFAM: GCN5-related N-acetyltransferase KEGG: jan:Jann_0752 GCN5-related N-acetyltransferase%3B middle Ref YP hit to GCN5-related N-acetyltransferase from Jannaschia sp. CCS1%3B NCBI conserved domains: rimL;Dbxref=Genbank:YP_001531701.1,GeneID:5711260;gbkey=CDS;product=N-acetyltransferase GCN5;protein_id=YP_001531701.1;transl_table=11
NC_009952.1	RefSeq	gene	335163	335696	.	-	.	ID=gene353;Name=Dshi_0352;Dbxref=GeneID:5711261;gbkey=Gene;locus_tag=Dshi_0352
NC_009952.1	RefSeq	CDS	335163	335696	.	-	0	ID=cds349;Name=YP_001531702.1;Parent=gene353;Note=middle Ref ZP hit to acetyltransferase%2C GNAT family protein from Roseobacter sp. CCS2%2C no significant swissprot%2C NCBI domains: rimL%3B prosite51186 GCN5-related N-acetyltransferase %3B GNAT family;Dbxref=Genbank:YP_001531702.1,GeneID:5711261;gbkey=CDS;product=acetyltransferase;protein_id=YP_001531702.1;transl_table=11
NC_009952.1	RefSeq	gene	335696	337210	.	-	.	ID=gene354;Name=ffh;Dbxref=GeneID:5711262;gbkey=Gene;gene=ffh;locus_tag=Dshi_0353
NC_009952.1	RefSeq	CDS	335696	337210	.	-	0	ID=cds350;Name=YP_001531703.1;Parent=gene354;Note=KEGG: rde:RD1_1315 signal recognition particle protein%2C putative TIGRFAM: signal recognition particle protein PFAM: GTP-binding signal recognition particle SRP54 G- domain%3B Signal peptide binding %28SRP54%29 M- domain protein%3B GTP-binding signal recognition particle SRP54 helical bundle SMART: AAA ATPase%3B high swissprot to Signal recognition particle protein from Rickettsia typhi;Dbxref=Genbank:YP_001531703.1,GeneID:5711262;gbkey=CDS;gene=ffh;product=signal recognition particle protein;protein_id=YP_001531703.1;transl_table=11
NC_009952.1	RefSeq	gene	337582	338226	.	-	.	ID=gene355;Name=azoR1;Dbxref=GeneID:5711263;gbkey=Gene;gene=azoR1;locus_tag=Dshi_0354
NC_009952.1	RefSeq	CDS	337582	338226	.	-	0	ID=cds351;Name=YP_001531704.1;Parent=gene355;Note=Pfam02525 Flavodoxin-like fold%2C NCBI conserved domains PRK00170 azoreductase%2C middle Ref ZP hit to %28Acyl-carrier protein%29 phosphodiesterase from Roseobacter sp. SK209-2-6%2C middle swissprot hit toFMN-dependent NADH-azoreductase 1 from Jannaschia sp. CCS1%3B at N-terminal unsure GC frame plot;Dbxref=Genbank:YP_001531704.1,GeneID:5711263;gbkey=CDS;gene=azoR1;product=FMN-dependent NADH-azoreductase 1;protein_id=YP_001531704.1;transl_table=11
NC_009952.1	RefSeq	gene	338282	339163	.	+	.	ID=gene356;Name=lysR;Dbxref=GeneID:5711264;gbkey=Gene;gene=lysR;locus_tag=Dshi_0355
NC_009952.1	RefSeq	CDS	338282	339163	.	+	0	ID=cds352;Name=YP_001531705.1;Parent=gene356;Note=PFAM: regulatory protein LysR%3B LysR substrate-binding KEGG: sit:TM1040_2599 transcriptional regulator%2C LysR family%3B high Ref Yp hit to transcriptional regulator%2C LysR family from Silicibacter sp. TM1040%3B LysR family;Dbxref=Genbank:YP_001531705.1,GeneID:5711264;gbkey=CDS;gene=lysR;product=transcriptional regulator;protein_id=YP_001531705.1;transl_table=11
NC_009952.1	RefSeq	gene	339214	340104	.	+	.	ID=gene357;Name=Dshi_0356;Dbxref=GeneID:5711265;gbkey=Gene;locus_tag=Dshi_0356
NC_009952.1	RefSeq	CDS	339214	340104	.	+	0	ID=cds353;Name=YP_001531706.1;Parent=gene357;Note=PFAM: protein of unknown function DUF6 transmembrane KEGG: rde:RD1_1318 integral membrane protein%2C putative%3B no significant swissprot%3B high Ref Yp hit to integral membrane protein%2C putative from Roseobacter denitrificans OCh 114%2C no conserved domains by NCBI%3B ten transmembrane regions;Dbxref=Genbank:YP_001531706.1,GeneID:5711265;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531706.1;transl_table=11
NC_009952.1	RefSeq	gene	340107	340445	.	-	.	ID=gene358;Name=arsR;Dbxref=GeneID:5711266;gbkey=Gene;gene=arsR;locus_tag=Dshi_0357
NC_009952.1	RefSeq	CDS	340107	340445	.	-	0	ID=cds354;Name=YP_001531707.1;Parent=gene358;Note=PFAM: regulatory protein ArsR KEGG: sit:TM1040_2597 transcriptional regulator%2C ArsR family%3B middle Ref ZP hit to transcriptional regulator%2C ArsR family protein from Roseovarius sp. TM1035%3B bad swissprot hit to cadC: Cadmium efflux system accessory protein from Listeria monocytogenes%3B ArsR family;Dbxref=Genbank:YP_001531707.1,GeneID:5711266;gbkey=CDS;gene=arsR;product=transcriptional regulator;protein_id=YP_001531707.1;transl_table=11
NC_009952.1	RefSeq	gene	340610	342199	.	+	.	ID=gene359;Name=purH;Dbxref=GeneID:5711267;gbkey=Gene;gene=purH;locus_tag=Dshi_0358
NC_009952.1	RefSeq	CDS	340610	342199	.	+	0	ID=cds355;Name=YP_001531708.1;Parent=gene359;Note=involved in de novo purine biosynthesis;Dbxref=Genbank:YP_001531708.1,GeneID:5711267;gbkey=CDS;gene=purH;product=bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase%2FIMP cyclohydrolase;protein_id=YP_001531708.1;transl_table=11
NC_009952.1	RefSeq	gene	342204	342680	.	+	.	ID=gene360;Name=lspA;Dbxref=GeneID:5711268;gbkey=Gene;gene=lspA;locus_tag=Dshi_0359
NC_009952.1	RefSeq	CDS	342204	342680	.	+	0	ID=cds356;Name=YP_001531709.1;Parent=gene360;Note=lipoprotein signal peptidase%3B integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis;Dbxref=Genbank:YP_001531709.1,GeneID:5711268;gbkey=CDS;gene=lspA;product=lipoprotein signal peptidase;protein_id=YP_001531709.1;transl_table=11
NC_009952.1	RefSeq	gene	342734	343279	.	+	.	ID=gene361;Name=Dshi_0360;Dbxref=GeneID:5711269;gbkey=Gene;locus_tag=Dshi_0360
NC_009952.1	RefSeq	CDS	342734	343279	.	+	0	ID=cds357;Name=YP_001531710.1;Parent=gene361;Note=KEGG: rsq:Rsph17025_2930 hypothetical protein%3B no significant swissprot%2C no conserved domains;Dbxref=Genbank:YP_001531710.1,GeneID:5711269;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531710.1;transl_table=11
NC_009952.1	RefSeq	gene	343363	344724	.	+	.	ID=gene362;Name=pqqL2;Dbxref=GeneID:5711270;gbkey=Gene;gene=pqqL2;locus_tag=Dshi_0361
NC_009952.1	RefSeq	CDS	343363	344724	.	+	0	ID=cds358;Name=YP_001531711.1;Parent=gene362;Note=PFAM: peptidase M16 domain protein%3B high swissprot to Uncharacterized zinc protease y4wA fromRhizobium sp. NGR234 and high Ref ZP hit to putative zinc protease from Rhodobacterales bacterium HTCC2150%3B NCBI conserved domains: pqqL;Dbxref=Genbank:YP_001531711.1,GeneID:5711270;gbkey=CDS;gene=pqqL2;product=peptidase M16 protein;protein_id=YP_001531711.1;transl_table=11
NC_009952.1	RefSeq	gene	344721	346034	.	+	.	ID=gene363;Name=pqqL1;Dbxref=GeneID:5711271;gbkey=Gene;gene=pqqL1;locus_tag=Dshi_0362
NC_009952.1	RefSeq	CDS	344721	346034	.	+	0	ID=cds359;Name=YP_001531712.1;Parent=gene363;Note=PFAM: peptidase M16 domain protein%3B good swissprot to Uncharacterized zinc protease-like protein y4wB from Rhizobium sp. NGR234 and Ref YP hit to peptidase M16 domain protein from Rhodobacter sphaeroides ATCC 17025%2C NCBI conserved domains: pqqL;Dbxref=Genbank:YP_001531712.1,GeneID:5711271;gbkey=CDS;gene=pqqL1;product=peptidase M16 protein;protein_id=YP_001531712.1;transl_table=11
NC_009952.1	RefSeq	gene	346074	347939	.	+	.	ID=gene364;Name=mutL;Dbxref=GeneID:5711272;gbkey=Gene;gene=mutL;locus_tag=Dshi_0363
NC_009952.1	RefSeq	CDS	346074	347939	.	+	0	ID=cds360;Name=YP_001531713.1;Parent=gene364;Note=This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex;Dbxref=Genbank:YP_001531713.1,GeneID:5711272;gbkey=CDS;gene=mutL;product=DNA mismatch repair protein;protein_id=YP_001531713.1;transl_table=11
NC_009952.1	RefSeq	gene	347936	349168	.	+	.	ID=gene365;Name=rmuC;Dbxref=GeneID:5711273;gbkey=Gene;gene=rmuC;locus_tag=Dshi_0364
NC_009952.1	RefSeq	CDS	347936	349168	.	+	0	ID=cds361;Name=YP_001531714.1;Parent=gene365;Note=PFAM: protein of unknown function DUF195 %3B NCBI conserved domains: rmuC%3B swissprot to DNA recombination protein rmuC homolog from Xylella fastidiosa Temecula1 and high Ref ZP hit to RmuC domain protein from Oceanicola batsensis HTCC2597;Dbxref=Genbank:YP_001531714.1,GeneID:5711273;gbkey=CDS;gene=rmuC;product=hypothetical protein;protein_id=YP_001531714.1;transl_table=11
NC_009952.1	RefSeq	gene	349194	349865	.	-	.	ID=gene366;Name=chrR1;Dbxref=GeneID:5711274;gbkey=Gene;gene=chrR1;locus_tag=Dshi_0365
NC_009952.1	RefSeq	CDS	349194	349865	.	-	0	ID=cds362;Name=YP_001531715.1;Parent=gene366;Note=TIGRFAM: anti-sigma factor%2C putative%2C ChrR family PFAM: Cupin 2 conserved barrel domain protein%3B good swissprot to Transcriptional activator chrR from Rhodobacter sphaeroides 2.4.1 and good Ref ZP hit to Anti-sigma factor ChrR from Roseovarius sp. TM1035%3B NCBI conserved domains: chrR%3B ChrR;Dbxref=Genbank:YP_001531715.1,GeneID:5711274;gbkey=CDS;gene=chrR1;product=anti-ECFsigma factor;protein_id=YP_001531715.1;transl_table=11
NC_009952.1	RefSeq	gene	349872	350441	.	-	.	ID=gene367;Name=rpoE2;Dbxref=GeneID:5711275;gbkey=Gene;gene=rpoE2;locus_tag=Dshi_0366
NC_009952.1	RefSeq	CDS	349872	350441	.	-	0	ID=cds363;Name=YP_001531716.1;Parent=gene367;Note=Member of the extracytoplasmic function sigma factors which are active under specific conditions%3B binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription%3B this sigma factor is involved in heat shock and oxidative stress response;Dbxref=Genbank:YP_001531716.1,GeneID:5711275;gbkey=CDS;gene=rpoE2;product=RNA polymerase sigma factor RpoE;protein_id=YP_001531716.1;transl_table=11
NC_009952.1	RefSeq	gene	350649	351953	.	+	.	ID=gene368;Name=Dshi_0367;Dbxref=GeneID:5711276;gbkey=Gene;locus_tag=Dshi_0367
NC_009952.1	RefSeq	CDS	350649	351953	.	+	0	ID=cds364;Name=YP_001531717.1;Parent=gene368;Note=PFAM: amine oxidase%3B FAD dependent oxidoreductase%2C no significant swissprot%2C high ref ZP hit to Putative cyclopropane%2Fcyclopropene fatty acid synthesis protein%2C flavin amine oxidase from Sulfitobacter sp. NAS-14.1;Dbxref=Genbank:YP_001531717.1,GeneID:5711276;gbkey=CDS;product=amine oxidase;protein_id=YP_001531717.1;transl_table=11
NC_009952.1	RefSeq	gene	351950	352708	.	+	.	ID=gene369;Name=Dshi_0368;Dbxref=GeneID:5711277;gbkey=Gene;locus_tag=Dshi_0368
NC_009952.1	RefSeq	CDS	351950	352708	.	+	0	ID=cds365;Name=YP_001531718.1;Parent=gene369;Note=PFAM: protein of unknown function DUF1365%3B no significant swissprot%2C high Ref YP hit to protein of unknown function DUF1365 from Jannaschia sp. CCS1;Dbxref=Genbank:YP_001531718.1,GeneID:5711277;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531718.1;transl_table=11
NC_009952.1	RefSeq	gene	352726	353964	.	+	.	ID=gene370;Name=Dshi_0369;Dbxref=GeneID:5711278;gbkey=Gene;locus_tag=Dshi_0369
NC_009952.1	RefSeq	CDS	352726	353964	.	+	0	ID=cds366;Name=YP_001531719.1;Parent=gene370;Note=bad swissprot hit to Uncharacterized symporter ynaJ from Bacillus subtilis and high Ref ZP hit to sodium:galactoside symporter family protein%2C putative from Roseobacter sp. CCS2%3B PF07690 MFS_1: transporter%2C major facilitator family;Dbxref=Genbank:YP_001531719.1,GeneID:5711278;gbkey=CDS;product=putative sodium:galactoside symporter family protein;protein_id=YP_001531719.1;transl_table=11
NC_009952.1	RefSeq	gene	353964	354554	.	+	.	ID=gene371;Name=Dshi_0370;Dbxref=GeneID:5711279;gbkey=Gene;locus_tag=Dshi_0370
NC_009952.1	RefSeq	CDS	353964	354554	.	+	0	ID=cds367;Name=YP_001531720.1;Parent=gene371;Note=no significant swissprot%2C good Ref ZP hit to hypothetical protein RCCS2_10850 from Roseobacter sp. CCS2%3B no NCBI conserved domains;Dbxref=Genbank:YP_001531720.1,GeneID:5711279;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531720.1;transl_table=11
NC_009952.1	RefSeq	gene	354573	355304	.	+	.	ID=gene372;Name=Dshi_0371;Dbxref=GeneID:5711280;gbkey=Gene;locus_tag=Dshi_0371
NC_009952.1	RefSeq	CDS	354573	355304	.	+	0	ID=cds368;Name=YP_001531721.1;Parent=gene372;Note=PFAM: short-chain dehydrogenase%2Freductase SDR%3B KR domain protein%3B middle swissprot hit to Uncharacterized oxidoreductase MXAN_5909 from Myxococcus xanthus DK 1622%2C good Ref ZP hit to Short-chain dehydrogenase%2Freductase family member from Loktanella vestfoldensis SKA53%3B NCBI conserved domains: COG4221%2C Short-chain alcohol dehydrogenase of unknown specificity;Dbxref=Genbank:YP_001531721.1,GeneID:5711280;gbkey=CDS;product=short-chain dehydrogenase%2Freductase SDR;protein_id=YP_001531721.1;transl_table=11
NC_009952.1	RefSeq	gene	355405	355728	.	+	.	ID=gene373;Name=Dshi_0372;Dbxref=GeneID:5711281;gbkey=Gene;locus_tag=Dshi_0372
NC_009952.1	RefSeq	CDS	355405	355728	.	+	0	ID=cds369;Name=YP_001531722.1;Parent=gene373;Note=no conserved domains detected%2C no significant swissprot%2C middle Ref ZP hit to hypothetical protein SKA53_12618 from Loktanella vestfoldensis SKA53;Dbxref=Genbank:YP_001531722.1,GeneID:5711281;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531722.1;transl_table=11
NC_009952.1	RefSeq	gene	355873	357843	.	+	.	ID=gene374;Name=fadD3;Dbxref=GeneID:5711282;gbkey=Gene;gene=fadD3;locus_tag=Dshi_0373
NC_009952.1	RefSeq	CDS	355873	357843	.	+	0	ID=cds370;Name=YP_001531723.1;Parent=gene374;Note=PFAM: AMP-dependent synthetase and ligase%2C good swissprot hit to Putative long-chain-fatty-acid--CoA ligase from Haemophilus influenzae and high Ref ZP hit to AMP-binding enzyme from Rhodobacterales bacterium HTCC2654%3B NCBI conserved domains: COG0318%2C CaiC%2C Acyl-CoA synthetases %28AMP-forming%29%2FAMP-acid ligases II;Dbxref=Genbank:YP_001531723.1,GeneID:5711282;gbkey=CDS;gene=fadD3;product=acyl-CoA synthetase;protein_id=YP_001531723.1;transl_table=11
NC_009952.1	RefSeq	gene	357902	358156	.	+	.	ID=gene375;Name=Dshi_0374;Dbxref=GeneID:5711283;gbkey=Gene;locus_tag=Dshi_0374
NC_009952.1	RefSeq	CDS	357902	358156	.	+	0	ID=cds371;Name=YP_001531724.1;Parent=gene375;Note=no significant BLAST hits%2C no conserved domains detected%3B normal GC frame plot;Dbxref=Genbank:YP_001531724.1,GeneID:5711283;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531724.1;transl_table=11
NC_009952.1	RefSeq	gene	358153	358974	.	+	.	ID=gene376;Name=livG;Dbxref=GeneID:5711284;gbkey=Gene;gene=livG;locus_tag=Dshi_0375
NC_009952.1	RefSeq	CDS	358153	358974	.	+	0	ID=cds372;Name=YP_001531725.1;Parent=gene376;Note=PFAM: ABC transporter related SMART: AAA ATPase%2C good swissprot to High-affinity branched-chain amino acid transport ATP-binding protein from Pseudomonas aeruginosa and high Ref ZP hit tobranched-chain amino acid ABC transporter%2C ATP-binding protein from Rhodobacterales bacterium HTCC2654%3B NCBI conserved domains: livG%3B gene arrangement %28ABC transporter%29 with following genes to Dshi_0381;Dbxref=Genbank:YP_001531725.1,GeneID:5711284;gbkey=CDS;gene=livG;product=high-affinity branched-chain amino acid transport ATP-binding protein livG;protein_id=YP_001531725.1;transl_table=11
NC_009952.1	RefSeq	gene	359118	360107	.	+	.	ID=gene377;Name=livH;Dbxref=GeneID:5711285;gbkey=Gene;gene=livH;locus_tag=Dshi_0376
NC_009952.1	RefSeq	CDS	359118	360107	.	+	0	ID=cds373;Name=YP_001531726.1;Parent=gene377;Note=PFAM: inner-membrane translocator KEGG: rde:RD1_0704 branched-chain amino acid ABC transporter%2C permease protein%2C putative%2C low swissprot hit to High-affinity branched-chain amino acid transport system permease protein livH from Escherichia coli K12 and high Ref ZP hit to ABC branched amino acid transporter family%2C inner membrane subunit from Rhodobacterales bacterium HTCC2654%2C NCBI conserved doma;Dbxref=Genbank:YP_001531726.1,GeneID:5711285;gbkey=CDS;gene=livH;product=high-affinity branched-chain amino acid transport system permease livH;protein_id=YP_001531726.1;transl_table=11
NC_009952.1	RefSeq	gene	360124	360432	.	-	.	ID=gene378;Name=Dshi_0377;Dbxref=GeneID:5711286;gbkey=Gene;locus_tag=Dshi_0377
NC_009952.1	RefSeq	CDS	360124	360432	.	-	0	ID=cds374;Name=YP_001531727.1;Parent=gene378;Note=no significant BLAST hits%2C unsure GC frame plot%2C no conserved domains detected%2C lies in the middle of ABC transporter;Dbxref=Genbank:YP_001531727.1,GeneID:5711286;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531727.1;transl_table=11
NC_009952.1	RefSeq	gene	360675	360929	.	+	.	ID=gene379;Name=Dshi_0378;Dbxref=GeneID:5711287;gbkey=Gene;locus_tag=Dshi_0378
NC_009952.1	RefSeq	CDS	360675	360929	.	+	0	ID=cds375;Name=YP_001531728.1;Parent=gene379;Note=no significant BLAST hits%2C unsure GC frame plot%2C no conserved domains detected%2C lies in the middle of ABC transporter;Dbxref=Genbank:YP_001531728.1,GeneID:5711287;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531728.1;transl_table=11
NC_009952.1	RefSeq	gene	361062	362138	.	+	.	ID=gene380;Name=livM;Dbxref=GeneID:5711288;gbkey=Gene;gene=livM;locus_tag=Dshi_0379
NC_009952.1	RefSeq	CDS	361062	362138	.	+	0	ID=cds376;Name=YP_001531729.1;Parent=gene380;Note=PFAM: inner-membrane translocator KEGG: sil:SPO3292 branched-chain amino acid ABC transporter%2C permease protein%3B middle swissprot hit to High-affinity branched-chain amino acid transport system permease protein livM from Salmonella typhimurium and high Ref YP hit to inner-membrane translocator from Jannaschia sp. CCS1%3B NCBI conserved domains:livM%3B gene arrangement with Dshi_0375 to Dshi_0381;Dbxref=Genbank:YP_001531729.1,GeneID:5711288;gbkey=CDS;gene=livM;product=high-affinity branched-chain amino acid transport system permease livM;protein_id=YP_001531729.1;transl_table=11
NC_009952.1	RefSeq	gene	362188	363468	.	+	.	ID=gene381;Name=livK;Dbxref=GeneID:5711289;gbkey=Gene;gene=livK;locus_tag=Dshi_0380
NC_009952.1	RefSeq	CDS	362188	363468	.	+	0	ID=cds377;Name=YP_001531730.1;Parent=gene381;Note=pfam01094 Receptor family ligand binding region%3B bad swissprot hit to Leu%2FIle%2FVal-binding protein homolog 3 precursor from Brucella suis and high Ref ZP hit to branched-chain amino acid ABC transporter%2C periplasmic from Roseobacter sp. MED193%3B gene arrangement with Dshi_0375 to Dshi_0381;Dbxref=Genbank:YP_001531730.1,GeneID:5711289;gbkey=CDS;gene=livK;product=high-affinity branched-chain amino acid transport system periplasmic-binding protein livK;protein_id=YP_001531730.1;transl_table=11
NC_009952.1	RefSeq	gene	363531	364355	.	+	.	ID=gene382;Name=livF1;Dbxref=GeneID:5711290;gbkey=Gene;gene=livF1;locus_tag=Dshi_0381
NC_009952.1	RefSeq	CDS	363531	364355	.	+	0	ID=cds378;Name=YP_001531731.1;Parent=gene382;Note=PFAM: ABC transporter related SMART: AAA ATPase KEGG: jan:Jann_4003 ABC transporter related%2C good swissprot hit to High-affinity branched-chain amino acid transport ATP-binding protein livF from Salmonella typhimurium and high Ref ZP hit to ABC transporter related protein from Roseobacter sp. CCS2%2C NCBI conserved domains: livF%3B gene cluster from Dshi_0375 to Dshi_0381;Dbxref=Genbank:YP_001531731.1,GeneID:5711290;gbkey=CDS;gene=livF1;product=high-affinity branched-chain amino acid transport ATP-binding protein livF;protein_id=YP_001531731.1;transl_table=11
NC_009952.1	RefSeq	gene	364512	365732	.	+	.	ID=gene383;Name=paaK;Dbxref=GeneID:5711291;gbkey=Gene;gene=paaK;locus_tag=Dshi_0382
NC_009952.1	RefSeq	CDS	364512	365732	.	+	0	ID=cds379;Name=YP_001531732.1;Parent=gene383;Note=SSF56801 Acetyl-CoA sythase-like%2C low swissprot hit to Phenylacetate-coenzyme A ligase from Escherichia coli K12 and high Ref Yp hit to phenylacetate-CoA ligase%2C putative from Silicibacter sp. TM1040%3B NCBI conserved domains:paaK;Dbxref=Genbank:YP_001531732.1,GeneID:5711291;gbkey=CDS;gene=paaK;product=phenylacetate-CoA ligase;protein_id=YP_001531732.1;transl_table=11
NC_009952.1	RefSeq	gene	365857	366321	.	+	.	ID=gene384;Name=Dshi_0383;Dbxref=GeneID:5711292;gbkey=Gene;locus_tag=Dshi_0383
NC_009952.1	RefSeq	CDS	365857	366321	.	+	0	ID=cds380;Name=YP_001531733.1;Parent=gene384;Note=no significant BLAST hits%2C unsure GC frame plot%2C no conserved domains;Dbxref=Genbank:YP_001531733.1,GeneID:5711292;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531733.1;transl_table=11
NC_009952.1	RefSeq	gene	366443	366901	.	-	.	ID=gene385;Name=Dshi_0384;Dbxref=GeneID:5711293;gbkey=Gene;locus_tag=Dshi_0384
NC_009952.1	RefSeq	CDS	366443	366901	.	-	0	ID=cds381;Name=YP_001531734.1;Parent=gene385;Note=KEGG: bur:Bcep18194_B1502 NUDIX hydrolase%3B no significant swissprot%2C bad Ref YP hit to NUDIX hydrolase from Burkholderia sp. 383%3B no conserved domains by Interpro Scan%2C NCBI conserved domains:NUDIX hydrolase 23;Dbxref=Genbank:YP_001531734.1,GeneID:5711293;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531734.1;transl_table=11
NC_009952.1	RefSeq	gene	366959	368212	.	+	.	ID=gene386;Name=dinB;Dbxref=GeneID:5711294;gbkey=Gene;gene=dinB;locus_tag=Dshi_0385
NC_009952.1	RefSeq	CDS	366959	368212	.	+	0	ID=cds382;Name=YP_001531735.1;Parent=gene386;Note=involved in translesion DNA polymerization with beta clamp of polymerase III%3B belongs to Y family of polymerases%3B does not contain proofreading function;Dbxref=Genbank:YP_001531735.1,GeneID:5711294;gbkey=CDS;gene=dinB;product=DNA polymerase IV;protein_id=YP_001531735.1;transl_table=11
NC_009952.1	RefSeq	gene	368291	369154	.	-	.	ID=gene387;Name=hutG;Dbxref=GeneID:5711295;gbkey=Gene;gene=hutG;locus_tag=Dshi_0386
NC_009952.1	RefSeq	CDS	368291	369154	.	-	0	ID=cds383;Name=YP_001531736.1;Parent=gene387;Note=PFAM: N-formylglutamate amidohydrolase KEGG: rde:RD1_0718 N-formylglutamate amidohydrolase%2C putative%3B no signifcant swissprot%3B good Ref ZP hit to N-formylglutamate amidohydrolase family protein from Loktanella vestfoldensis SKA53%3B NCBI conserved domains: hutG;Dbxref=Genbank:YP_001531736.1,GeneID:5711295;gbkey=CDS;gene=hutG;product=N-formylglutamate amidohydrolase;protein_id=YP_001531736.1;transl_table=11
NC_009952.1	RefSeq	gene	369290	369364	.	+	.	ID=gene388;Name=Dshi_6005;Dbxref=GeneID:5711296;gbkey=Gene;locus_tag=Dshi_6005
NC_009952.1	RefSeq	tRNA	369290	369364	.	+	.	ID=rna4;Parent=gene388;Dbxref=GeneID:5711296;codons=49;gbkey=tRNA;product=tRNA-Val
NC_009952.1	RefSeq	exon	369290	369364	.	+	.	ID=id5;Parent=rna4;Dbxref=GeneID:5711296;codons=49;gbkey=tRNA;product=tRNA-Val
NC_009952.1	RefSeq	gene	369431	369556	.	+	.	ID=gene389;Name=rpmJ;Dbxref=GeneID:5711297;gbkey=Gene;gene=rpmJ;locus_tag=Dshi_0387
NC_009952.1	RefSeq	CDS	369431	369556	.	+	0	ID=cds384;Name=YP_001531737.1;Parent=gene389;Note=smallest protein in the large subunit%3B similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc%3B the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion%3B the proteins in this group do not have the motif;Dbxref=Genbank:YP_001531737.1,GeneID:5711297;gbkey=CDS;gene=rpmJ;product=50S ribosomal protein L36;protein_id=YP_001531737.1;transl_table=11
NC_009952.1	RefSeq	gene	369763	370548	.	-	.	ID=gene390;Name=rbsA5;Dbxref=GeneID:5711298;gbkey=Gene;gene=rbsA5;locus_tag=Dshi_0388
NC_009952.1	RefSeq	CDS	369763	370548	.	-	0	ID=cds385;Name=YP_001531738.1;Parent=gene390;Note=PFAM: ABC transporter related SMART: AAA ATPase KEGG: sit:TM1040_0370 ABC transporter related%3B good swissprot hit to Ribose import ATP-binding protein rbsA from Anabaena variabilis and high Ref ZP hit to sugar ABC transporter%2C ATP-binding protein%2C putative from Roseobacter sp. CCS2;Dbxref=Genbank:YP_001531738.1,GeneID:5711298;gbkey=CDS;gene=rbsA5;product=ribose import ATP-binding protein rbsA;protein_id=YP_001531738.1;transl_table=11
NC_009952.1	RefSeq	gene	370545	371618	.	-	.	ID=gene391;Name=rbsC2;Dbxref=GeneID:5711299;gbkey=Gene;gene=rbsC2;locus_tag=Dshi_0389
NC_009952.1	RefSeq	CDS	370545	371618	.	-	0	ID=cds386;Name=YP_001531739.1;Parent=gene391;Note=PFAM: inner-membrane translocator KEGG: sit:TM1040_0369 inner-membrane translocator%3B middle swissprot hit to Ribose transport system permease protein rbsC from Bacillus subtilis and high Ref YP hit to inner-membrane translocator from Silicibacter sp. TM1040;Dbxref=Genbank:YP_001531739.1,GeneID:5711299;gbkey=CDS;gene=rbsC2;product=ribose transport system permease rbsC;protein_id=YP_001531739.1;transl_table=11
NC_009952.1	RefSeq	gene	371715	372728	.	-	.	ID=gene392;Name=rbsB3;Dbxref=GeneID:5711300;gbkey=Gene;gene=rbsB3;locus_tag=Dshi_0390
NC_009952.1	RefSeq	CDS	371715	372728	.	-	0	ID=cds387;Name=YP_001531740.1;Parent=gene392;Note=PFAM: periplasmic binding protein%2FLacI transcriptional regulator KEGG: sit:TM1040_0368 periplasmic binding protein%2FLacI transcriptional regulator%3B low swissprot hit to D-ribose-binding periplasmic protein precursor from Salmonella typhimurium and high Ref YP hit to periplasmic binding protein%2FLacI transcriptional regulator from Silicibacter sp. TM1040%3B NCBI conserved domains:rbsB;Dbxref=Genbank:YP_001531740.1,GeneID:5711300;gbkey=CDS;gene=rbsB3;product=D-ribose-binding periplasmic protein;protein_id=YP_001531740.1;transl_table=11
NC_009952.1	RefSeq	gene	373482	374943	.	+	.	ID=gene393;Name=Dshi_6006;Dbxref=GeneID:5711301;gbkey=Gene;locus_tag=Dshi_6006
NC_009952.1	RefSeq	rRNA	373482	374943	.	+	.	ID=rna5;Parent=gene393;Dbxref=GeneID:5711301;gbkey=rRNA;product=16S ribosomal RNA
NC_009952.1	RefSeq	exon	373482	374943	.	+	.	ID=id6;Parent=rna5;Dbxref=GeneID:5711301;gbkey=rRNA;product=16S ribosomal RNA
NC_009952.1	RefSeq	gene	375220	375296	.	+	.	ID=gene394;Name=Dshi_6007;Dbxref=GeneID:5711302;gbkey=Gene;locus_tag=Dshi_6007
NC_009952.1	RefSeq	tRNA	375220	375296	.	+	.	ID=rna6;Parent=gene394;Dbxref=GeneID:5711302;codons=33;gbkey=tRNA;product=tRNA-Ile
NC_009952.1	RefSeq	exon	375220	375296	.	+	.	ID=id7;Parent=rna6;Dbxref=GeneID:5711302;codons=33;gbkey=tRNA;product=tRNA-Ile
NC_009952.1	RefSeq	gene	375472	375547	.	+	.	ID=gene395;Name=Dshi_6008;Dbxref=GeneID:5711303;gbkey=Gene;locus_tag=Dshi_6008
NC_009952.1	RefSeq	tRNA	375472	375547	.	+	.	ID=rna7;Parent=gene395;Dbxref=GeneID:5711303;codons=54;gbkey=tRNA;product=tRNA-Ala
NC_009952.1	RefSeq	exon	375472	375547	.	+	.	ID=id8;Parent=rna7;Dbxref=GeneID:5711303;codons=54;gbkey=tRNA;product=tRNA-Ala
NC_009952.1	RefSeq	gene	376011	378902	.	+	.	ID=gene396;Name=Dshi_6009;Dbxref=GeneID:5711304;gbkey=Gene;locus_tag=Dshi_6009
NC_009952.1	RefSeq	rRNA	376011	378902	.	+	.	ID=rna8;Parent=gene396;Dbxref=GeneID:5711304;gbkey=rRNA;product=23S ribosomal RNA
NC_009952.1	RefSeq	exon	376011	376174	.	+	.	ID=id9;Parent=rna8;Dbxref=GeneID:5711304;gbkey=rRNA;product=23S ribosomal RNA
NC_009952.1	RefSeq	exon	376255	378902	.	+	.	ID=id10;Parent=rna8;Dbxref=GeneID:5711304;gbkey=rRNA;product=23S ribosomal RNA
NC_009952.1	RefSeq	gene	379112	379229	.	+	.	ID=gene397;Name=Dshi_6010;Dbxref=GeneID:5711305;gbkey=Gene;locus_tag=Dshi_6010
NC_009952.1	RefSeq	rRNA	379112	379229	.	+	.	ID=rna9;Parent=gene397;Dbxref=GeneID:5711305;gbkey=rRNA;product=5S ribosomal RNA
NC_009952.1	RefSeq	exon	379112	379229	.	+	.	ID=id11;Parent=rna9;Dbxref=GeneID:5711305;gbkey=rRNA;product=5S ribosomal RNA
NC_009952.1	RefSeq	gene	379296	379372	.	+	.	ID=gene398;Name=Dshi_6011;Dbxref=GeneID:5711306;gbkey=Gene;locus_tag=Dshi_6011
NC_009952.1	RefSeq	tRNA	379296	379372	.	+	.	ID=rna10;Parent=gene398;Dbxref=GeneID:5711306;codons=35;gbkey=tRNA;product=tRNA-Met
NC_009952.1	RefSeq	exon	379296	379372	.	+	.	ID=id12;Parent=rna10;Dbxref=GeneID:5711306;codons=35;gbkey=tRNA;product=tRNA-Met
NC_009952.1	RefSeq	gene	379683	382190	.	+	.	ID=gene399;Name=Dshi_0391;Dbxref=GeneID:5711307;gbkey=Gene;locus_tag=Dshi_0391
NC_009952.1	RefSeq	CDS	379683	382190	.	+	0	ID=cds388;Name=YP_001531741.1;Parent=gene399;Note=no significant swissprot%2C high Ref ZP hit to hypothetical protein MELB17_00320 from Marinobacter sp. ELB17%3B pfam02810 SEC-C motif;Dbxref=Genbank:YP_001531741.1,GeneID:5711307;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531741.1;transl_table=11
NC_009952.1	RefSeq	gene	382289	383437	.	-	.	ID=gene400;Name=Dshi_0392;Dbxref=GeneID:5711308;gbkey=Gene;locus_tag=Dshi_0392
NC_009952.1	RefSeq	CDS	382289	383437	.	-	0	ID=cds389;Name=YP_001531742.1;Parent=gene400;Note=no significant swissprot%2C high Ref hit to hypothetical protein TM1040_3581 from Silicibacter sp. TM1040%3B no conserved domains%2C unsure GC frame plot;Dbxref=Genbank:YP_001531742.1,GeneID:5711308;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531742.1;transl_table=11
NC_009952.1	RefSeq	gene	383697	383918	.	-	.	ID=gene401;Name=Dshi_0393;Dbxref=GeneID:5711309;gbkey=Gene;locus_tag=Dshi_0393
NC_009952.1	RefSeq	CDS	383697	383918	.	-	0	ID=cds390;Name=YP_001531743.1;Parent=gene401;Note=no significant swissprot%2C no conserved domains%2C bad Ref Yp hit to hypothetical protein TM1040_3583 from Silicibacter sp. TM1040%2C bad GC frame plot%2C CRISPR region;Dbxref=Genbank:YP_001531743.1,GeneID:5711309;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531743.1;transl_table=11
NC_009952.1	RefSeq	gene	383978	384751	.	-	.	ID=gene402;Name=Dshi_0394;Dbxref=GeneID:5711310;gbkey=Gene;locus_tag=Dshi_0394
NC_009952.1	RefSeq	CDS	383978	384751	.	-	0	ID=cds391;Name=YP_001531744.1;Parent=gene402;Note=no significant swissprot%2C no conserved domains%2C bad GC frame plot%3B bad Ref Yp hit to hypothetical protein TM1040_3584 from Silicibacter sp. TM1040%3B CRISPR region;Dbxref=Genbank:YP_001531744.1,GeneID:5711310;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531744.1;transl_table=11
NC_009952.1	RefSeq	gene	384765	385958	.	-	.	ID=gene403;Name=Dshi_0395;Dbxref=GeneID:5711311;gbkey=Gene;locus_tag=Dshi_0395
NC_009952.1	RefSeq	CDS	384765	385958	.	-	0	ID=cds392;Name=YP_001531745.1;Parent=gene403;Note=PFAM: integrase family protein KEGG: sit:TM1040_3585 phage integrase%3B COG4974 - Site-specific recombinase XerD%3B high Ref YP hit to phage integrase from Silicibacter sp. TM1040 and bad swissprot hit to Putative prophage CPZ-55 integrase from Escherichia coli K12%3B bad GC frame plot%2C CRISPR region;Dbxref=Genbank:YP_001531745.1,GeneID:5711311;gbkey=CDS;product=phage integrase family protein;protein_id=YP_001531745.1;transl_table=11
NC_009952.1	RefSeq	gene	386137	387813	.	-	.	ID=gene404;Name=Dshi_0396;Dbxref=GeneID:5711312;gbkey=Gene;locus_tag=Dshi_0396
NC_009952.1	RefSeq	CDS	386137	387813	.	-	0	ID=cds393;Name=YP_001531746.1;Parent=gene404;Note=PFAM: Resolvase domain%3B Recombinase KEGG: pde:Pden_3123 recombinase%3B COG1961 - Site-specific recombinases%2C DNA invertase Pin homologs%3B bad swissprot hit toPutative DNA recombinase from Bacillus subtilis and high Ref ZP hit toResolvase%2C N-terminal:Recombinase from Paracoccus denitrificans PD1222%3B bad GC frame plot%2C CRISPR region;Dbxref=Genbank:YP_001531746.1,GeneID:5711312;gbkey=CDS;product=recombinase;protein_id=YP_001531746.1;transl_table=11
NC_009952.1	RefSeq	gene	387910	388986	.	-	.	ID=gene405;Name=xerDC2;Dbxref=GeneID:5711313;gbkey=Gene;gene=xerDC2;locus_tag=Dshi_0397
NC_009952.1	RefSeq	CDS	387910	388986	.	-	0	ID=cds394;Name=YP_001531747.1;Parent=gene405;Note=PFAM: integrase family protein %3B low swissprot hit to Tyrosine recombinase xerD from Bacillus subtilis and middle Ref EDP hit to phage integrase from alpha proteobacterium BAL199%3B NCBI conserved domains: xerDC%3B CRISPR region;Dbxref=Genbank:YP_001531747.1,GeneID:5711313;gbkey=CDS;gene=xerDC2;product=integrase family protein;protein_id=YP_001531747.1;transl_table=11
NC_009952.1	RefSeq	gene	388979	390658	.	-	.	ID=gene406;Name=xerDC1;Dbxref=GeneID:5711314;gbkey=Gene;gene=xerDC1;locus_tag=Dshi_0398
NC_009952.1	RefSeq	CDS	388979	390658	.	-	0	ID=cds395;Name=YP_001531748.1;Parent=gene406;Note=PFAM: integrase family protein%3B COG4974 - Site-specific recombinase XerD%3B bad swissprot hit to Tyrosine recombinase xerC from Pseudomonas aeruginosa and good Ref ZP hit to phage integrase from Roseovarius sp. HTCC2601%3B CRISPR region;Dbxref=Genbank:YP_001531748.1,GeneID:5711314;gbkey=CDS;gene=xerDC1;product=integrase family protein;protein_id=YP_001531748.1;transl_table=11
NC_009952.1	RefSeq	gene	390817	391029	.	-	.	ID=gene407;Name=Dshi_0399;Dbxref=GeneID:5711315;gbkey=Gene;locus_tag=Dshi_0399
NC_009952.1	RefSeq	CDS	390817	391029	.	-	0	ID=cds396;Name=YP_001531749.1;Parent=gene407;Note=TIGRFAM: DNA binding domain%2C excisionase family PFAM: regulatory protein MerR%3B NCBI conserved domains: HTH_MerR-trunc%3B bad Ref YP hit to DNA binding domain%2C excisionase family from Alkaliphilus oremlandii OhILAs and bad swissprot hit to Gene 36 protein from Mycobacterium phage D29%3B bad GC frame plot%3B Dshi_0400 to Dshi_0402 CRISPRs%3B excisionase family;Dbxref=Genbank:YP_001531749.1,GeneID:5711315;gbkey=CDS;product=DNA-binding domain-containing protein;protein_id=YP_001531749.1;transl_table=11
NC_009952.1	RefSeq	gene	391798	395037	.	+	.	ID=gene408;Name=Dshi_0400;Dbxref=GeneID:5711316;gbkey=Gene;locus_tag=Dshi_0400
NC_009952.1	RefSeq	CDS	391798	395037	.	+	0	ID=cds397;Name=YP_001531750.1;Parent=gene408;Note=TIGRFAM: CRISPR-associated protein%2C Csn1 family %3B no significant swissprot%2C high Ref YP hit to CRISPR-associated protein%2C Csn1 family from Verminephrobacter eiseniae EF01-2%3B Csn1 family;Dbxref=Genbank:YP_001531750.1,GeneID:5711316;gbkey=CDS;product=CRISPR-associated protein;protein_id=YP_001531750.1;transl_table=11
NC_009952.1	RefSeq	gene	395098	396009	.	+	.	ID=gene409;Name=Dshi_0401;Dbxref=GeneID:5711317;gbkey=Gene;locus_tag=Dshi_0401
NC_009952.1	RefSeq	CDS	395098	396009	.	+	0	ID=cds398;Name=YP_001531751.1;Parent=gene409;Note=TIGRFAM: CRISPR-associated protein Cas1 KEGG: vei:Veis_1231 CRISPR-associated protein Cas1%2C no significant swissprot%2C good Ref YP hit to CRISPR-associated protein Cas1 from Verminephrobacter eiseniae EF01-2;Dbxref=Genbank:YP_001531751.1,GeneID:5711317;gbkey=CDS;product=CRISPR-associated protein Cas1;protein_id=YP_001531751.1;transl_table=11
NC_009952.1	RefSeq	gene	396006	396350	.	+	.	ID=gene410;Name=Dshi_0402;Dbxref=GeneID:5711318;gbkey=Gene;locus_tag=Dshi_0402
NC_009952.1	RefSeq	CDS	396006	396350	.	+	0	ID=cds399;Name=YP_001531752.1;Parent=gene410;Note=TIGRFAM: CRISPR-associated protein Cas2 KEGG: vei:Veis_1232 CRISPR-associated protein Cas2%3B no significant swissprot%3B low Ref YP hit to CRISPR-associated protein Cas2 from Verminephrobacter eiseniae EF01-2;Dbxref=Genbank:YP_001531752.1,GeneID:5711318;gbkey=CDS;product=CRISPR-associated protein Cas2;protein_id=YP_001531752.1;transl_table=11
NC_009952.1	RefSeq	gene	397989	398255	.	+	.	ID=gene411;Name=Dshi_0403;Dbxref=GeneID:5711319;gbkey=Gene;locus_tag=Dshi_0403
NC_009952.1	RefSeq	CDS	397989	398255	.	+	0	ID=cds400;Name=YP_001531753.1;Parent=gene411;Note=PFAM: transposase IS3%2FIS911 family protein%3B NCBI conserved domains: transposase_8%3B middle Ref ZP hit to Insertion element ISR1 hypothetical 10 kDa protein A3 from Sagittula stellata E-37%3B middle swissprot to Insertion element ISR1 uncharacterized 10 kDa protein A3 from Rhizobium sp.;Dbxref=Genbank:YP_001531753.1,GeneID:5711319;gbkey=CDS;product=insertion element ISR1 10 kDa protein A3;protein_id=YP_001531753.1;transl_table=11
NC_009952.1	RefSeq	gene	398279	399088	.	+	.	ID=gene412;Name=Dshi_0404;Dbxref=GeneID:5711320;gbkey=Gene;locus_tag=Dshi_0404
NC_009952.1	RefSeq	CDS	398279	399088	.	+	0	ID=cds401;Name=YP_001531754.1;Parent=gene412;Note=PFAM: Integrase catalytic region KEGG: bbt:BBta_7691 integrase%2C catalytic domain%3B good swissprot hit toInsertion element IS476 uncharacterized 39.2 kDa protein from Xanthomonas euvesicatoria%3B high Ref Yp hit to Integrase catalytic region from Xanthobacter autotrophicus Py2%3B downstream of CRISPR region;Dbxref=Genbank:YP_001531754.1,GeneID:5711320;gbkey=CDS;product=integrase catalytic subunit;protein_id=YP_001531754.1;transl_table=11
NC_009952.1	RefSeq	gene	399227	400612	.	-	.	ID=gene413;Name=Dshi_0405;Dbxref=GeneID:5711321;gbkey=Gene;locus_tag=Dshi_0405
NC_009952.1	RefSeq	CDS	399227	400612	.	-	0	ID=cds402;Name=YP_001531755.1;Parent=gene413;Note=no significant BLAST hits%2C no conserved domains%2C unsure GC frame plot%2C downstream of CRISPR region;Dbxref=Genbank:YP_001531755.1,GeneID:5711321;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531755.1;transl_table=11
NC_009952.1	RefSeq	gene	400543	401841	.	-	.	ID=gene414;Name=Dshi_0406;Dbxref=GeneID:5711322;gbkey=Gene;locus_tag=Dshi_0406
NC_009952.1	RefSeq	CDS	400543	401841	.	-	0	ID=cds403;Name=YP_001531756.1;Parent=gene414;Note=no significant BLAST hits%2C no conserved domains%2C unsure GC frame plot;Dbxref=Genbank:YP_001531756.1,GeneID:5711322;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531756.1;transl_table=11
NC_009952.1	RefSeq	gene	402104	402430	.	+	.	ID=gene415;Name=Dshi_0407;Dbxref=GeneID:5711323;gbkey=Gene;locus_tag=Dshi_0407
NC_009952.1	RefSeq	CDS	402104	402430	.	+	0	ID=cds404;Name=YP_001531757.1;Parent=gene415;Note=PFAM: helix-turn-helix domain protein KEGG: nmu:Nmul_D2824 transcriptional regulator%2C XRE family%3B no significant swissprot%2C middle Ref YP hit to transcriptional regulator%2C XRE family from Nitrosospira multiformis ATCC 25196%3B XRE family;Dbxref=Genbank:YP_001531757.1,GeneID:5711323;gbkey=CDS;product=transcriptional regulator;protein_id=YP_001531757.1;transl_table=11
NC_009952.1	RefSeq	gene	402441	403163	.	+	.	ID=gene416;Name=Dshi_0408;Dbxref=GeneID:5711324;gbkey=Gene;locus_tag=Dshi_0408
NC_009952.1	RefSeq	CDS	402441	403163	.	+	0	ID=cds405;Name=YP_001531758.1;Parent=gene416;Note=PFAM: protein of unknown function DUF955 KEGG: nmu:Nmul_D2822 hypothetical protein%3B no significant swissprot%3B middle Ref YP hit to hypothetical protein Nmul_D2822 from Nitrosospira multiformis ATCC 25196;Dbxref=Genbank:YP_001531758.1,GeneID:5711324;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531758.1;transl_table=11
NC_009952.1	RefSeq	gene	403268	403912	.	+	.	ID=gene417;Name=Dshi_0409;Dbxref=GeneID:5711325;gbkey=Gene;locus_tag=Dshi_0409
NC_009952.1	RefSeq	CDS	403268	403912	.	+	0	ID=cds406;Name=YP_001531759.1;Parent=gene417;Note=KEGG: nwi:Nwi_1958 hypothetical protein%3B no significant swissprot%2C middle Ref YP hit to hypothetical protein Nwi_1958 from Nitrobacter winogradskyi Nb-255%2C no conserved domains detected;Dbxref=Genbank:YP_001531759.1,GeneID:5711325;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531759.1;transl_table=11
NC_009952.1	RefSeq	gene	404246	405190	.	-	.	ID=gene418;Name=Dshi_0410;Dbxref=GeneID:5711326;gbkey=Gene;locus_tag=Dshi_0410
NC_009952.1	RefSeq	CDS	404246	405190	.	-	0	ID=cds407;Name=YP_001531760.1;Parent=gene418;Note=good Ref Yp hit to hypothetical protein RD1_0494 from Roseobacter denitrificans OCh 114%3B no significant swissprot%3B short signalpeptide and two transmembrane regions%3B unsure GC frame plot;Dbxref=Genbank:YP_001531760.1,GeneID:5711326;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531760.1;transl_table=11
NC_009952.1	RefSeq	gene	405174	406022	.	-	.	ID=gene419;Name=Dshi_0411;Dbxref=GeneID:5711327;gbkey=Gene;locus_tag=Dshi_0411
NC_009952.1	RefSeq	CDS	405174	406022	.	-	0	ID=cds408;Name=YP_001531761.1;Parent=gene419;Note=good Ref YP hit to hypothetical protein RD1_0495 from Roseobacter denitrificans OCh 114%3B no significant swissprot%3B no NCBI conserved domains%3B PS00092 N-6 Adenine-specific DNA methylase;Dbxref=Genbank:YP_001531761.1,GeneID:5711327;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531761.1;transl_table=11
NC_009952.1	RefSeq	gene	406254	407786	.	+	.	ID=gene420;Name=fas;Dbxref=GeneID:5711328;gbkey=Gene;gene=fas;locus_tag=Dshi_0412
NC_009952.1	RefSeq	CDS	406254	407786	.	+	0	ID=cds409;Name=YP_001531762.1;Parent=gene420;Note=PFAM: beta-Ig-H3%2Ffasciclin%3B Hemolysin-type calcium-binding region KEGG: pde:Pden_0560 hemolysin-type calcium-binding region%3B NCBI conserved domains: Fasciclin%3B middle Ref YP hit to Beta-Ig-H3%2Ffasciclin from Ralstonia eutropha JMP134%3B no significant swissprot;Dbxref=Genbank:YP_001531762.1,GeneID:5711328;gbkey=CDS;gene=fas;product=beta-Ig-H3%2Ffasciclin;protein_id=YP_001531762.1;transl_table=11
NC_009952.1	RefSeq	gene	407836	408195	.	+	.	ID=gene421;Name=Dshi_0413;Dbxref=GeneID:5711329;gbkey=Gene;locus_tag=Dshi_0413
NC_009952.1	RefSeq	CDS	407836	408195	.	+	0	ID=cds410;Name=YP_001531763.1;Parent=gene421;Note=no significant swissprot%2C unsure GC frame Plot%2C no conserved domains detected by InterPro Scan%3B NCBI conserved domains: COG1373 - Predicted ATPase %28AAA%2B superfamily%29%3B middle Ref ZP hit tohypothetical protein RTM1035_00450 from Roseovarius sp. TM1035;Dbxref=Genbank:YP_001531763.1,GeneID:5711329;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531763.1;transl_table=11
NC_009952.1	RefSeq	gene	408427	408873	.	-	.	ID=gene422;Name=Dshi_0414;Dbxref=GeneID:5711330;gbkey=Gene;locus_tag=Dshi_0414
NC_009952.1	RefSeq	CDS	408427	408873	.	-	0	ID=cds411;Name=YP_001531764.1;Parent=gene422;Note=KEGG: pde:Pden_4724 GreA%2FGreB family elongation factor%3B bad swissprot hit to Transcription elongation factor greA from Brucella suis%3B middle Ref ZP hit to putative nucleoside diphosphate kinase regulator from Oceanicola batsensis HTCC2597%3B NCBI conserved domains: PRK05753%2C nucleoside diphosphate kinase regulator and GreA%2FB;Dbxref=Genbank:YP_001531764.1,GeneID:5711330;gbkey=CDS;product=GreA%2FGreB family elongation factor;protein_id=YP_001531764.1;transl_table=11
NC_009952.1	RefSeq	gene	409020	409262	.	+	.	ID=gene423;Name=Dshi_0415;Dbxref=GeneID:5711331;gbkey=Gene;locus_tag=Dshi_0415
NC_009952.1	RefSeq	CDS	409020	409262	.	+	0	ID=cds412;Name=YP_001531765.1;Parent=gene423;Note=no significant BLAST hits%2C no conserved domains%3B unsure GC frame plot;Dbxref=Genbank:YP_001531765.1,GeneID:5711331;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531765.1;transl_table=11
NC_009952.1	RefSeq	gene	409608	409919	.	+	.	ID=gene424;Name=Dshi_0416;Dbxref=GeneID:5711332;gbkey=Gene;locus_tag=Dshi_0416
NC_009952.1	RefSeq	CDS	409608	409919	.	+	0	ID=cds413;Name=YP_001531766.1;Parent=gene424;Note=PFAM: protein of unknown function DUF1127%3B bad Ref ZP hit to hypothetical protein OB2597_05265 from Oceanicola batsensis HTCC2597%3B no significant swissprot%2C unsure GC frame plot;Dbxref=Genbank:YP_001531766.1,GeneID:5711332;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531766.1;transl_table=11
NC_009952.1	RefSeq	gene	410003	410209	.	+	.	ID=gene425;Name=Dshi_0417;Dbxref=GeneID:5711333;gbkey=Gene;locus_tag=Dshi_0417
NC_009952.1	RefSeq	CDS	410003	410209	.	+	0	ID=cds414;Name=YP_001531767.1;Parent=gene425;Note=no significant BLAST hits%2C no conserved domains%2C unsure GC frame plot;Dbxref=Genbank:YP_001531767.1,GeneID:5711333;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531767.1;transl_table=11
NC_009952.1	RefSeq	gene	410284	411177	.	+	.	ID=gene426;Name=uspA2;Dbxref=GeneID:5711334;gbkey=Gene;gene=uspA2;locus_tag=Dshi_0418
NC_009952.1	RefSeq	CDS	410284	411177	.	+	0	ID=cds415;Name=YP_001531768.1;Parent=gene426;Note=PFAM: UspA domain protein KEGG: hha:Hhal_1414 UspA domain protein%3B COG0589 - Universal stress protein UspA and related nucleotide-binding proteins%2C bad swissprot hit to Stress response protein nhaX from Bacillus subtilis%3B low Ref YP hit to UspA domain protein from Halorhodospira halophila SL1%2C NCBI conserved domains:Usp%2FUspA like;Dbxref=Genbank:YP_001531768.1,GeneID:5711334;gbkey=CDS;gene=uspA2;product=universal stress protein uspA;protein_id=YP_001531768.1;transl_table=11
NC_009952.1	RefSeq	gene	411331	412584	.	+	.	ID=gene427;Name=Dshi_0419;Dbxref=GeneID:5711335;gbkey=Gene;locus_tag=Dshi_0419
NC_009952.1	RefSeq	CDS	411331	412584	.	+	0	ID=cds416;Name=YP_001531769.1;Parent=gene427;Note=PFAM: major facilitator superfamily MFS_1 KEGG: sal:Sala_2954 major facilitator superfamily MFS_1%3B middle swissprot hit to Uncharacterized MFS-type transporter ycaD from Salmonella typhi and good Ref ZP hit to major facilitator family transporter from Sphingomonas sp. SKA58;Dbxref=Genbank:YP_001531769.1,GeneID:5711335;gbkey=CDS;product=major facilitator superfamily protein;protein_id=YP_001531769.1;transl_table=11
NC_009952.1	RefSeq	gene	412724	413434	.	+	.	ID=gene428;Name=Dshi_0420;Dbxref=GeneID:5711336;gbkey=Gene;locus_tag=Dshi_0420
NC_009952.1	RefSeq	CDS	412724	413434	.	+	0	ID=cds417;Name=YP_001531770.1;Parent=gene428;Note=PFAM: Endonuclease%2Fexonuclease%2Fphosphatase KEGG: sil:SPO2482 endonuclease%2Fexonuclease%2Fphosphatase family protein%3B no significant swissprot%3B good Ref EDP hit to metal-dependent hydrolase from Oceanibulbus indolifex HEL-45%2C NCBI conserved domains: elsH%2C Metal-dependent hydrolase;Dbxref=Genbank:YP_001531770.1,GeneID:5711336;gbkey=CDS;product=endonuclease%2Fexonuclease%2Fphosphatase;protein_id=YP_001531770.1;transl_table=11
NC_009952.1	RefSeq	gene	413435	414979	.	+	.	ID=gene429;Name=Dshi_0421;Dbxref=GeneID:5711337;gbkey=Gene;locus_tag=Dshi_0421
NC_009952.1	RefSeq	CDS	413435	414979	.	+	0	ID=cds418;Name=YP_001531771.1;Parent=gene429;Note=PFAM: phospholipase D%2FTransphosphatidylase KEGG: pmy:Pmen_2055 phospholipase D%2Ftransphosphatidylase%3B high swissprot hit to Uncharacterized protein ymdC from Escherichia coli K12 and high Ref EDP hit to phospholipase D%2FTransphosphatidylase from Oceanibulbus indolifex HEL-45%3B NCBI conserved domains: PLDc;Dbxref=Genbank:YP_001531771.1,GeneID:5711337;gbkey=CDS;product=phospholipase D%2Ftransphosphatidylase;protein_id=YP_001531771.1;transl_table=11
NC_009952.1	RefSeq	gene	415164	415685	.	+	.	ID=gene430;Name=Dshi_0422;Dbxref=GeneID:5711338;gbkey=Gene;locus_tag=Dshi_0422
NC_009952.1	RefSeq	CDS	415164	415685	.	+	0	ID=cds419;Name=YP_001531772.1;Parent=gene430;Note=PFAM: Propeptide PepSY amd peptidase M4 KEGG: swi:Swit_4515 hypothetical protein%3B no significant swissprot%3B bad gb hit to Propeptide%2C PepSY amd peptidase M4 from Oceanibulbus indolifex HEL-45;Dbxref=Genbank:YP_001531772.1,GeneID:5711338;gbkey=CDS;product=propeptide PepSY amd peptidase M4;protein_id=YP_001531772.1;transl_table=11
NC_009952.1	RefSeq	gene	415763	416488	.	-	.	ID=gene431;Name=pap;Dbxref=GeneID:5711339;gbkey=Gene;gene=pap;locus_tag=Dshi_0423
NC_009952.1	RefSeq	CDS	415763	416488	.	-	0	ID=cds420;Name=YP_001531773.1;Parent=gene431;Note=PFAM: phosphoesterase PA-phosphatase related KEGG: rsh:Rsph17029_1755 phosphoesterase%2C PA-phosphatase related%2C no significant swissprot%3B good Ref YP hit to PA-phosphatase related phosphoesterase from Rhodobacter sphaeroides 2.4.1%3B NCBI conserved domains: Pap2-like;Dbxref=Genbank:YP_001531773.1,GeneID:5711339;gbkey=CDS;gene=pap;product=PA-phosphatase-like phosphoesterase;protein_id=YP_001531773.1;transl_table=11
NC_009952.1	RefSeq	gene	417105	417566	.	+	.	ID=gene432;Name=Dshi_0424;Dbxref=GeneID:5711340;gbkey=Gene;locus_tag=Dshi_0424
NC_009952.1	RefSeq	CDS	417105	417566	.	+	0	ID=cds421;Name=YP_001531774.1;Parent=gene432;Dbxref=Genbank:YP_001531774.1,GeneID:5711340;gbkey=CDS;product=peptidase M41;protein_id=YP_001531774.1;transl_table=11
NC_009952.1	RefSeq	gene	418488	418850	.	+	.	ID=gene433;Name=Dshi_0426;Dbxref=GeneID:5711342;gbkey=Gene;locus_tag=Dshi_0426
NC_009952.1	RefSeq	CDS	418488	418850	.	+	0	ID=cds422;Name=YP_001531775.1;Parent=gene433;Note=no significant swissprot%3B PD068243 REGULATORY BACTERIAL FAMILY MERR CYTOPLASMIC%3B middle Ref ZP hit to hypothetical protein ROS217_15345 from Roseovarius sp. 217;Dbxref=Genbank:YP_001531775.1,GeneID:5711342;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531775.1;transl_table=11
NC_009952.1	RefSeq	gene	418998	419249	.	+	.	ID=gene434;Name=Dshi_0427;Dbxref=GeneID:5711343;gbkey=Gene;locus_tag=Dshi_0427
NC_009952.1	RefSeq	CDS	418998	419249	.	+	0	ID=cds423;Name=YP_001531776.1;Parent=gene434;Note=no significant swissprot%2C no conserved domains %28except for one signalpeptide%2F two transmembr. region%29%2C bad Ref YP hit to hypothetical protein AZC_2085 from Azorhizobium caulinodans ORS 571;Dbxref=Genbank:YP_001531776.1,GeneID:5711343;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531776.1;transl_table=11
NC_009952.1	RefSeq	gene	419269	421152	.	+	.	ID=gene435;Name=phaC;Dbxref=GeneID:5711344;gbkey=Gene;gene=phaC;locus_tag=Dshi_0428
NC_009952.1	RefSeq	CDS	419269	421152	.	+	0	ID=cds424;Name=YP_001531777.1;Parent=gene435;Note=PFAM: alpha%2Fbeta hydrolase fold%3B Poly-beta-hydroxybutyrate polymerase domain protein KEGG: sil:SPO0112 poly%283-hydroxyalkanoate%29 polymerase family protein%3B high Ref YP hit to poly%283-hydroxyalkanoate%29 polymerase family protein from Silicibacter pomeroyi DSS-3 and high swissprot hit to Poly%283-hydroxyalkanoate%29 polymerase %28PHA polymerase%29 from Methylobacterium extorquens%3B NCBI conserved domains: phaC;Dbxref=Genbank:YP_001531777.1,GeneID:5711344;gbkey=CDS;gene=phaC;product=poly%283-hydroxyalkanoate%29 polymerase;protein_id=YP_001531777.1;transl_table=11
NC_009952.1	RefSeq	gene	421265	421552	.	-	.	ID=gene436;Name=Dshi_0429;Dbxref=GeneID:5711345;gbkey=Gene;locus_tag=Dshi_0429
NC_009952.1	RefSeq	CDS	421265	421552	.	-	0	ID=cds425;Name=YP_001531778.1;Parent=gene436;Note=no significant swissprot%2C no conserved domains%2C low Ref Yp hit to uncharacterized conserved coiled coil protein from Marinomonas sp. MWYL1;Dbxref=Genbank:YP_001531778.1,GeneID:5711345;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531778.1;transl_table=11
NC_009952.1	RefSeq	gene	421575	422009	.	-	.	ID=gene437;Name=Dshi_0430;Dbxref=GeneID:5711346;gbkey=Gene;locus_tag=Dshi_0430
NC_009952.1	RefSeq	CDS	421575	422009	.	-	0	ID=cds426;Name=YP_001531779.1;Parent=gene437;Note=no significant swissprot%2C no conserved domains%2C low Ref YP hit to hypothetical protein SPO0412 from Silicibacter pomeroyi DSS-3;Dbxref=Genbank:YP_001531779.1,GeneID:5711346;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531779.1;transl_table=11
NC_009952.1	RefSeq	gene	422213	423661	.	+	.	ID=gene438;Name=dcuC;Dbxref=GeneID:5711347;gbkey=Gene;gene=dcuC;locus_tag=Dshi_0431
NC_009952.1	RefSeq	CDS	422213	423661	.	+	0	ID=cds427;Name=YP_001531780.1;Parent=gene438;Note=PFAM: C4-dicarboxylate anaerobic carrier KEGG: mes:Meso_2242 C4-dicarboxylate anaerobic carrier%3B good swissprot hit to Uncharacterized protein HI0594 from Haemophilus influenzae%3B high Ref Yp hit to C4-dicarboxylate anaerobic carrier from Mesorhizobium sp. BNC1%3B NCBI conserved domains: dcuC;Dbxref=Genbank:YP_001531780.1,GeneID:5711347;gbkey=CDS;gene=dcuC;product=C4-dicarboxylate anaerobic carrier;protein_id=YP_001531780.1;transl_table=11
NC_009952.1	RefSeq	gene	423677	424906	.	+	.	ID=gene439;Name=arcA;Dbxref=GeneID:5711348;gbkey=Gene;gene=arcA;locus_tag=Dshi_0432
NC_009952.1	RefSeq	CDS	423677	424906	.	+	0	ID=cds428;Name=YP_001531781.1;Parent=gene439;Note=catalyzes the degradation of arginine to citruline and ammonia;Dbxref=Genbank:YP_001531781.1,GeneID:5711348;gbkey=CDS;gene=arcA;product=arginine deiminase;protein_id=YP_001531781.1;transl_table=11
NC_009952.1	RefSeq	gene	424920	425921	.	+	.	ID=gene440;Name=arcB;Dbxref=GeneID:5711349;gbkey=Gene;gene=arcB;locus_tag=Dshi_0433
NC_009952.1	RefSeq	CDS	424920	425921	.	+	0	ID=cds429;Name=YP_001531782.1;Parent=gene440;Note=TIGRFAM: ornithine carbamoyltransferase PFAM: aspartate%2Fornithine carbamoyltransferase Asp%2FOrn-binding region%3B aspartate%2Fornithine carbamoyltransferase carbamoyl-P binding domain KEGG: mes:Meso_2240 ornithine carbamoyltransferase%3B high swissprot hit to Ornithine carbamoyltransferase%2C catabolic from Haemophilus influenzae;Dbxref=Genbank:YP_001531782.1,GeneID:5711349;gbkey=CDS;gene=arcB;product=ornithine carbamoyltransferase;protein_id=YP_001531782.1;transl_table=11
NC_009952.1	RefSeq	gene	425925	426863	.	+	.	ID=gene441;Name=arcC;Dbxref=GeneID:5711350;gbkey=Gene;gene=arcC;locus_tag=Dshi_0434
NC_009952.1	RefSeq	CDS	425925	426863	.	+	0	ID=cds430;Name=YP_001531783.1;Parent=gene441;Note=reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP;Dbxref=Genbank:YP_001531783.1,GeneID:5711350;gbkey=CDS;gene=arcC;product=carbamate kinase;protein_id=YP_001531783.1;transl_table=11
NC_009952.1	RefSeq	gene	427117	428505	.	+	.	ID=gene442;Name=atpD1;Dbxref=GeneID:5711351;gbkey=Gene;gene=atpD1;locus_tag=Dshi_0435
NC_009952.1	RefSeq	CDS	427117	428505	.	+	0	ID=cds431;Name=YP_001531784.1;Parent=gene442;Note=produces ATP from ADP in the presence of a proton gradient across the membrane%3B the beta chain is a regulatory subunit;Dbxref=Genbank:YP_001531784.1,GeneID:5711351;gbkey=CDS;gene=atpD1;product=F0F1 ATP synthase subunit beta;protein_id=YP_001531784.1;transl_table=11
NC_009952.1	RefSeq	gene	428502	428912	.	+	.	ID=gene443;Name=atpC2;Dbxref=GeneID:5711352;gbkey=Gene;gene=atpC2;locus_tag=Dshi_0436
NC_009952.1	RefSeq	CDS	428502	428912	.	+	0	ID=cds432;Name=YP_001531785.1;Parent=gene443;Note=TIGRFAM: ATP synthase F1%2C epsilon subunit PFAM: H%2Btransporting two-sector ATPase delta%2Fepsilon subunit KEGG: net:Neut_2014 H%2B-transporting two-sector ATPase%2C delta%2Fepsilon subunit%2C low swissprot hit to ATP synthase epsilon chain 2 from Burkholderia xenovorans LB400;Dbxref=Genbank:YP_001531785.1,GeneID:5711352;gbkey=CDS;gene=atpC2;product=ATP synthase F1 subunit epsilon;protein_id=YP_001531785.1;transl_table=11
NC_009952.1	RefSeq	gene	428909	429196	.	+	.	ID=gene444;Name=atpC2;Dbxref=GeneID:5711353;gbkey=Gene;gene=atpC2;locus_tag=Dshi_0437
NC_009952.1	RefSeq	CDS	428909	429196	.	+	0	ID=cds433;Name=YP_001531786.1;Parent=gene444;Note=TIGRFAM: F0F1-ATPase subunit%2C putative PFAM: F0F1-ATPase subunit putative KEGG: net:Neut_2015 F0F1-ATPase subunit%2C putative%3B no significant swissprot%3B low Ref ZP hit to H%28%2B%29-transporting ATP synthase%2C gene 1 from Marinobacter sp. ELB17;Dbxref=Genbank:YP_001531786.1,GeneID:5711353;gbkey=CDS;product=ATP synthase F0F1 subunit;protein_id=YP_001531786.1;transl_table=11
NC_009952.1	RefSeq	gene	429193	429498	.	+	.	ID=gene445;Name=Dshi_0438;Dbxref=GeneID:5711354;gbkey=Gene;locus_tag=Dshi_0438
NC_009952.1	RefSeq	CDS	429193	429498	.	+	0	ID=cds434;Name=YP_001531787.1;Parent=gene445;Note=no significant swissprot and no conserved domains %28except from signalpep. and three transmembr. regions%29%3B low%2C but best Ref ZP hit to F0F1 ATP synthase subunit A from Marinobacter sp. ELB17%2C lies in the middle of F0F1 ATPase cluster;Dbxref=Genbank:YP_001531787.1,GeneID:5711354;gbkey=CDS;product=ATP synthase F0F1 subunit;protein_id=YP_001531787.1;transl_table=11
NC_009952.1	RefSeq	gene	429489	430178	.	+	.	ID=gene446;Name=atpB2;Dbxref=GeneID:5711355;gbkey=Gene;gene=atpB2;locus_tag=Dshi_0439
NC_009952.1	RefSeq	CDS	429489	430178	.	+	0	ID=cds435;Name=YP_001531788.1;Parent=gene446;Note=Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0;Dbxref=Genbank:YP_001531788.1,GeneID:5711355;gbkey=CDS;gene=atpB2;product=F0F1 ATP synthase subunit A;protein_id=YP_001531788.1;transl_table=11
NC_009952.1	RefSeq	gene	430175	430465	.	+	.	ID=gene447;Name=atpE1;Dbxref=GeneID:5711356;gbkey=Gene;gene=atpE1;locus_tag=Dshi_0440
NC_009952.1	RefSeq	CDS	430175	430465	.	+	0	ID=cds436;Name=YP_001531789.1;Parent=gene447;Note=produces ATP from ADP in the presence of a proton gradient across the membrane%3B subunit C is part of the membrane proton channel F0;Dbxref=Genbank:YP_001531789.1,GeneID:5711356;gbkey=CDS;gene=atpE1;product=F0F1 ATP synthase subunit C;protein_id=YP_001531789.1;transl_table=11
NC_009952.1	RefSeq	gene	430470	431237	.	+	.	ID=gene448;Name=atpF1;Dbxref=GeneID:5711357;gbkey=Gene;gene=atpF1;locus_tag=Dshi_0441
NC_009952.1	RefSeq	CDS	430470	431237	.	+	0	ID=cds437;Name=YP_001531790.1;Parent=gene448;Note=PFAM: H%2Btransporting two-sector ATPase B%2FB subunit KEGG: net:Neut_2019 H%2B-transporting two-sector ATPase%2C B%2FB subunit%3B low swissprot hit to ATP synthase B chain from Vibrio vulnificus and good Ref ZP hit to H%28%2B%29-transporting ATP synthase%2C subunit B from Marinobacter sp. ELB17;Dbxref=Genbank:YP_001531790.1,GeneID:5711357;gbkey=CDS;gene=atpF1;product=ATP synthase F0 subunit B;protein_id=YP_001531790.1;transl_table=11
NC_009952.1	RefSeq	gene	431227	432756	.	+	.	ID=gene449;Name=atpA2;Dbxref=GeneID:5711358;gbkey=Gene;gene=atpA2;locus_tag=Dshi_0442
NC_009952.1	RefSeq	CDS	431227	432756	.	+	0	ID=cds438;Name=YP_001531791.1;Parent=gene449;Note=KEGG: net:Neut_2020 ATP synthase F1%2C alpha subunit TIGRFAM: ATP synthase F1%2C alpha subunit PFAM: H%2Btransporting two-sector ATPase alpha%2Fbeta subunit central region%3B H%2Btransporting two-sector ATPase alpha%2Fbeta subunit domain protein%3B high swissprot hit to ATP synthase subunit alpha 2 from Syntrophus aciditrophicus SB;Dbxref=Genbank:YP_001531791.1,GeneID:5711358;gbkey=CDS;gene=atpA2;product=ATP synthase F1 subunit alpha;protein_id=YP_001531791.1;transl_table=11
NC_009952.1	RefSeq	gene	432740	433687	.	+	.	ID=gene450;Name=atpG1;Dbxref=GeneID:5711359;gbkey=Gene;gene=atpG1;locus_tag=Dshi_0443
NC_009952.1	RefSeq	CDS	432740	433687	.	+	0	ID=cds439;Name=YP_001531792.1;Parent=gene450;Note=PFAM: H%2Btransporting two-sector ATPase gamma subunit KEGG: net:Neut_2021 H%2B-transporting two-sector ATPase%2C gamma subunit%3B low swissprot hit to ATP synthase gamma chain from Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough and good Ref ZP hit to H%28%2B%29-transporting ATP synthase%2C subunit gamma fromMarinobacter sp. ELB17%3B NCBI conserved domains: atpG;Dbxref=Genbank:YP_001531792.1,GeneID:5711359;gbkey=CDS;gene=atpG1;product=ATP synthase F1 subunit gamma;protein_id=YP_001531792.1;transl_table=11
NC_009952.1	RefSeq	gene	433725	434012	.	+	.	ID=gene451;Name=Dshi_0444;Dbxref=GeneID:5711360;gbkey=Gene;locus_tag=Dshi_0444
NC_009952.1	RefSeq	CDS	433725	434012	.	+	0	ID=cds440;Name=YP_001531793.1;Parent=gene451;Note=no significant swissprot%2C no conserved domains%2C low Ref YP hit to hypothetical protein Nham_4077 from Nitrobacter hamburgensis X14;Dbxref=Genbank:YP_001531793.1,GeneID:5711360;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531793.1;transl_table=11
NC_009952.1	RefSeq	gene	434046	434438	.	+	.	ID=gene452;Name=Dshi_0445;Dbxref=GeneID:5711361;gbkey=Gene;locus_tag=Dshi_0445
NC_009952.1	RefSeq	CDS	434046	434438	.	+	0	ID=cds441;Name=YP_001531794.1;Parent=gene452;Note=no significant swissprot%2C no conserved domains%2C low Ref ZP hit to hypothetical protein NB311A_09431 from Nitrobacter sp. Nb-311A;Dbxref=Genbank:YP_001531794.1,GeneID:5711361;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531794.1;transl_table=11
NC_009952.1	RefSeq	gene	434569	434979	.	+	.	ID=gene453;Name=Dshi_0446;Dbxref=GeneID:5711362;gbkey=Gene;locus_tag=Dshi_0446
NC_009952.1	RefSeq	CDS	434569	434979	.	+	0	ID=cds442;Name=YP_001531795.1;Parent=gene453;Note=PFAM: CBS domain containing protein%3B middle Ref YP hit to CBS domain containing protein from Mesorhizobium sp. BNC1 and bad swissprot to Uncharacterized protein yhcV from Bacillus subtilis%3B NCBI conserved domains: cbs_pair_9;Dbxref=Genbank:YP_001531795.1,GeneID:5711362;gbkey=CDS;product=putative signal transduction protein;protein_id=YP_001531795.1;transl_table=11
NC_009952.1	RefSeq	gene	434981	435769	.	-	.	ID=gene454;Name=Dshi_0447;Dbxref=GeneID:5711363;gbkey=Gene;locus_tag=Dshi_0447
NC_009952.1	RefSeq	CDS	434981	435769	.	-	0	ID=cds443;Name=YP_001531796.1;Parent=gene454;Note=PFAM: cyclic nucleotide-binding SMART: regulatory protein Crp%3B low swissprot hit to Transcriptional activatory protein aadR from Rhodopseudomonas palustris and middle Ref ZP hit to transcriptional regulator%2C Crp%2FFnr family protein from Roseobacter sp. AzwK-3b%3B Crp%2FFnr family;Dbxref=Genbank:YP_001531796.1,GeneID:5711363;gbkey=CDS;product=transcriptional regulator;protein_id=YP_001531796.1;transl_table=11
NC_009952.1	RefSeq	gene	436086	437696	.	+	.	ID=gene455;Name=Dshi_0448;Dbxref=GeneID:5711364;gbkey=Gene;locus_tag=Dshi_0448
NC_009952.1	RefSeq	CDS	436086	437696	.	+	0	ID=cds444;Name=YP_001531797.1;Parent=gene455;Note=PFAM: ATP-binding region ATPase domain protein%3B histidine kinase HAMP region domain protein%3B histidine kinase A domain protein%3B middle swissprot hit to Uncharacterized sensor-like histidine kinase yclK from Bacillus subtilis and high Ref YP hit to Sensor protein resE%2C putative from Roseobacter denitrificans OCh 114;Dbxref=Genbank:YP_001531797.1,GeneID:5711364;gbkey=CDS;product=integral membrane sensor signal transduction histidine kinase;protein_id=YP_001531797.1;transl_table=11
NC_009952.1	RefSeq	gene	437751	438434	.	+	.	ID=gene456;Name=Dshi_0449;Dbxref=GeneID:5711365;gbkey=Gene;locus_tag=Dshi_0449
NC_009952.1	RefSeq	CDS	437751	438434	.	+	0	ID=cds445;Name=YP_001531798.1;Parent=gene456;Note=PFAM: response regulator receiver%3B transcriptional regulator domain protein%3B middle swissprot hit to Transcriptional regulatory protein dltR from Streptococcus agalactiae serogroup III %28Phosphorylated by dltS kinase%29%3B good Ref YP hit to transcriptional regulatory protein PrrA%2C putative from Roseobacter denitrificans OCh 114%3B winged helix family;Dbxref=Genbank:YP_001531798.1,GeneID:5711365;gbkey=CDS;product=two component transcriptional regulator;protein_id=YP_001531798.1;transl_table=11
NC_009952.1	RefSeq	gene	438538	438636	.	+	.	ID=gene457;Name=pqqA;Dbxref=GeneID:5711366;gbkey=Gene;gene=pqqA;locus_tag=Dshi_0450
NC_009952.1	RefSeq	CDS	438538	438636	.	+	0	ID=cds446;Name=YP_001531799.1;Parent=gene457;Note=Required for coenzyme pyrroloquinoline quinone %28PQQ%29 biosynthesis%3B probably provides the glutamate and tyrosine residues that are cross-linked and modified to form the coenzyme;Dbxref=Genbank:YP_001531799.1,GeneID:5711366;gbkey=CDS;gene=pqqA;product=coenzyme PQQ synthesis protein PqqA;protein_id=YP_001531799.1;transl_table=11
NC_009952.1	RefSeq	gene	438663	439556	.	+	.	ID=gene458;Name=pqqB;Dbxref=GeneID:5711367;gbkey=Gene;gene=pqqB;locus_tag=Dshi_0451
NC_009952.1	RefSeq	CDS	438663	439556	.	+	0	ID=cds447;Name=YP_001531800.1;Parent=gene458;Note=possibly involved in transport of pyrroloquinoline quinone transport;Dbxref=Genbank:YP_001531800.1,GeneID:5711367;gbkey=CDS;gene=pqqB;product=pyrroloquinoline quinone biosynthesis protein PqqB;protein_id=YP_001531800.1;transl_table=11
NC_009952.1	RefSeq	gene	439556	440308	.	+	.	ID=gene459;Name=pqqC;Dbxref=GeneID:5711368;gbkey=Gene;gene=pqqC;locus_tag=Dshi_0452
NC_009952.1	RefSeq	CDS	439556	440308	.	+	0	ID=cds448;Name=YP_001531801.1;Parent=gene459;Note=Required in the synthesis of PPQ%2C but its exact function is unknown;Dbxref=Genbank:YP_001531801.1,GeneID:5711368;gbkey=CDS;gene=pqqC;product=pyrroloquinoline quinone biosynthesis protein PqqC;protein_id=YP_001531801.1;transl_table=11
NC_009952.1	RefSeq	gene	440305	440583	.	+	.	ID=gene460;Name=pqqD;Dbxref=GeneID:5711369;gbkey=Gene;gene=pqqD;locus_tag=Dshi_0453
NC_009952.1	RefSeq	CDS	440305	440583	.	+	0	ID=cds449;Name=YP_001531802.1;Parent=gene460;Note=PFAM: coenzyme PQQ synthesis D%3B low swissprot hit to Coenzyme PQQ synthesis protein D from Silicibacter pomeroyi%3B middle Ref ZP hit to coenzyme PQQ synthesis protein D from Roseovarius sp. HTCC2601%3B NCBI conserved domains: pqqD;Dbxref=Genbank:YP_001531802.1,GeneID:5711369;gbkey=CDS;gene=pqqD;product=coenzyme PQQ biosynthesis protein PqqD;protein_id=YP_001531802.1;transl_table=11
NC_009952.1	RefSeq	gene	440580	441686	.	+	.	ID=gene461;Name=pqqE;Dbxref=GeneID:5711370;gbkey=Gene;gene=pqqE;locus_tag=Dshi_0454
NC_009952.1	RefSeq	CDS	440580	441686	.	+	0	ID=cds450;Name=YP_001531803.1;Parent=gene461;Note=TIGRFAM: coenzyme PQQ biosynthesis protein E PFAM: Radical SAM domain protein KEGG: rde:RD1_1150 coenzyme PQQ biosynthesis protein E%3B high swissprot hit to Coenzyme PQQ synthesis protein E from Silicibacter pomeroyi;Dbxref=Genbank:YP_001531803.1,GeneID:5711370;gbkey=CDS;gene=pqqE;product=pyrroloquinoline quinone biosynthesis protein PqqE;protein_id=YP_001531803.1;transl_table=11
NC_009952.1	RefSeq	gene	442029	442946	.	+	.	ID=gene462;Name=Dshi_0455;Dbxref=GeneID:5711371;gbkey=Gene;locus_tag=Dshi_0455
NC_009952.1	RefSeq	CDS	442029	442946	.	+	0	ID=cds451;Name=YP_001531804.1;Parent=gene462;Note=no significant swissprot%3B no conserved domains except for short signalpeptide%3B high Ref YP hit to hypothetical protein RD1_0870 from Roseobacter denitrificans OCh 114;Dbxref=Genbank:YP_001531804.1,GeneID:5711371;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531804.1;transl_table=11
NC_009952.1	RefSeq	gene	443039	443995	.	+	.	ID=gene463;Name=moxR;Dbxref=GeneID:5711372;gbkey=Gene;gene=moxR;locus_tag=Dshi_0456
NC_009952.1	RefSeq	CDS	443039	443995	.	+	0	ID=cds452;Name=YP_001531805.1;Parent=gene463;Note=PFAM: ATPase associated with various cellular activities AAA_3%3B ATPase associated with various cellular activities AAA_5 SMART: AAA ATPase KEGG: rde:RD1_0871 MoxR-like ATPase%2C middle swissprot hit to Protein moxR from Methylobacterium extorquens and high Ref YP hit to MoxR-like ATPase from Roseobacter denitrificans OCh 114;Dbxref=Genbank:YP_001531805.1,GeneID:5711372;gbkey=CDS;gene=moxR;product=MoxR-like ATPase;protein_id=YP_001531805.1;transl_table=11
NC_009952.1	RefSeq	gene	443992	444900	.	+	.	ID=gene464;Name=moxR;Dbxref=GeneID:5711373;gbkey=Gene;gene=moxR;locus_tag=Dshi_0457
NC_009952.1	RefSeq	CDS	443992	444900	.	+	0	ID=cds453;Name=YP_001531806.1;Parent=gene464;Note=PFAM: protein of unknown function DUF58%3B no significant swissprot%3B high Ref YP hit to hypothetical protein RD1_0873 from Roseobacter denitrificans OCh 114;Dbxref=Genbank:YP_001531806.1,GeneID:5711373;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531806.1;transl_table=11
NC_009952.1	RefSeq	gene	444897	445268	.	+	.	ID=gene465;Name=Dshi_0458;Dbxref=GeneID:5711374;gbkey=Gene;locus_tag=Dshi_0458
NC_009952.1	RefSeq	CDS	444897	445268	.	+	0	ID=cds454;Name=YP_001531807.1;Parent=gene465;Note=no significant swissprot%2C no conserved domains%3B middle Ref YP hit to hypothetical protein RD1_0874 from Roseobacter denitrificans OCh 114;Dbxref=Genbank:YP_001531807.1,GeneID:5711374;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531807.1;transl_table=11
NC_009952.1	RefSeq	gene	445261	446223	.	+	.	ID=gene466;Name=Dshi_0459;Dbxref=GeneID:5711375;gbkey=Gene;locus_tag=Dshi_0459
NC_009952.1	RefSeq	CDS	445261	446223	.	+	0	ID=cds455;Name=YP_001531808.1;Parent=gene466;Note=PFAM: von Willebrand factor type A KEGG: rde:RD1_0875 hypothetical protein%3B bad swissprot hit to Uncharacterized protein BB_0173 from Borrelia burgdorferi%2C unsure GC frame plot;Dbxref=Genbank:YP_001531808.1,GeneID:5711375;gbkey=CDS;product=von Willebrand factor type A;protein_id=YP_001531808.1;transl_table=11
NC_009952.1	RefSeq	gene	446220	447119	.	+	.	ID=gene467;Name=Dshi_0460;Dbxref=GeneID:5711376;gbkey=Gene;locus_tag=Dshi_0460
NC_009952.1	RefSeq	CDS	446220	447119	.	+	0	ID=cds456;Name=YP_001531809.1;Parent=gene467;Note=no significant swissprot%2C unsure GC frame plot%3B NCBI conserved domains: VWA domain %28von Willebrand factor%29%3B high Ref YP hit to hypothetical protein RD1_0876 from Roseobacter denitrificans OCh 114;Dbxref=Genbank:YP_001531809.1,GeneID:5711376;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531809.1;transl_table=11
NC_009952.1	RefSeq	gene	447116	447790	.	+	.	ID=gene468;Name=Dshi_0461;Dbxref=GeneID:5711377;gbkey=Gene;locus_tag=Dshi_0461
NC_009952.1	RefSeq	CDS	447116	447790	.	+	0	ID=cds457;Name=YP_001531810.1;Parent=gene468;Note=unsure GC frame plot%2C no conserved domains %28except for one signalpep. and one transmembr. region%29%3B good Ref YP hit to hypothetical protein RD1_0877 from Roseobacter denitrificans OCh 114%3B bad swissprot hit to Transposon Ty2-GR1 Gag-Pol polyprotein from Saccharomyces cerevisiae%3B Dshi_0463 transposase family protein;Dbxref=Genbank:YP_001531810.1,GeneID:5711377;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531810.1;transl_table=11
NC_009952.1	RefSeq	gene	447787	448983	.	+	.	ID=gene469;Name=Dshi_0462;Dbxref=GeneID:5711378;gbkey=Gene;locus_tag=Dshi_0462
NC_009952.1	RefSeq	CDS	447787	448983	.	+	0	ID=cds458;Name=YP_001531811.1;Parent=gene469;Note=no significant swissprot%2C unsure GC frame plot%3B high Ref YP hit to hypothetical protein RD1_0878 from Roseobacter denitrificans OCh 114;Dbxref=Genbank:YP_001531811.1,GeneID:5711378;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531811.1;transl_table=11
NC_009952.1	RefSeq	gene	449156	449422	.	+	.	ID=gene470;Name=Dshi_0463;Dbxref=GeneID:5711379;gbkey=Gene;locus_tag=Dshi_0463
NC_009952.1	RefSeq	CDS	449156	449422	.	+	0	ID=cds459;Name=YP_001531812.1;Parent=gene470;Note=PFAM: transposase IS3%2FIS911 family protein KEGG: rde:RD1_3450 inverted repeat region%3B middle swissprot hit to Insertion element ISR1 uncharacterized 10 kDa protein A3 from Rhizobium sp.;Dbxref=Genbank:YP_001531812.1,GeneID:5711379;gbkey=CDS;product=transposase IS3%2FIS911 family protein;protein_id=YP_001531812.1;transl_table=11
NC_009952.1	RefSeq	gene	449446	450267	.	+	.	ID=gene471;Name=Dshi_0464;Dbxref=GeneID:5711380;gbkey=Gene;locus_tag=Dshi_0464
NC_009952.1	RefSeq	CDS	449446	450267	.	+	0	ID=cds460;Name=YP_001531813.1;Parent=gene471;Note=PFAM: Integrase catalytic region KEGG: rde:RD1_3449 integrase%2C catalytic domain%2C putative%3B good swissprot hit to Insertion element IS476 uncharacterized 39.2 kDa protein from Xanthomonas euvesicatoria and high Ref YP hit to integrase%2C catalytic domain%2C putative from Roseobacter denitrificans OCh 114%3B NCBI conserved domains: rve;Dbxref=Genbank:YP_001531813.1,GeneID:5711380;gbkey=CDS;product=integrase catalytic subunit;protein_id=YP_001531813.1;transl_table=11
NC_009952.1	RefSeq	gene	450313	451032	.	+	.	ID=gene472;Name=luxR2;Dbxref=GeneID:5711381;gbkey=Gene;gene=luxR2;locus_tag=Dshi_0465
NC_009952.1	RefSeq	CDS	450313	451032	.	+	0	ID=cds461;Name=YP_001531814.1;Parent=gene472;Note=blast hits%2C no swissprot%2C Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain%2C PFAM: regulatory protein LuxR%3B response regulator receiver%3B LuxR family;Dbxref=Genbank:YP_001531814.1,GeneID:5711381;gbkey=CDS;gene=luxR2;product=two component transcriptional regulator;protein_id=YP_001531814.1;transl_table=11
NC_009952.1	RefSeq	gene	451045	452202	.	+	.	ID=gene473;Name=Dshi_0466;Dbxref=GeneID:5711382;gbkey=Gene;locus_tag=Dshi_0466
NC_009952.1	RefSeq	CDS	451045	452202	.	+	0	ID=cds462;Name=YP_001531815.1;Parent=gene473;Note=PFAM: domain of unknown function DUF1745%2C no significant swissprot%2C unsure GC frame plot%3B high Ref YP hit to hypothetical protein RD1_0880 from Roseobacter denitrificans OCh 114;Dbxref=Genbank:YP_001531815.1,GeneID:5711382;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531815.1;transl_table=11
NC_009952.1	RefSeq	gene	452199	454475	.	+	.	ID=gene474;Name=Dshi_0467;Dbxref=GeneID:5711383;gbkey=Gene;locus_tag=Dshi_0467
NC_009952.1	RefSeq	CDS	452199	454475	.	+	0	ID=cds463;Name=YP_001531816.1;Parent=gene474;Note=PFAM: response regulator receiver%3B ATP-binding region ATPase domain protein%3B histidine kinase A domain protein%3B middle swissprot to Sensor protein rcsC from Salmonella typhimurium%3B high RefZP hit to putative sensor histidine kinase protein from Sagittula stellata E-37%3B unsure GC frame plot;Dbxref=Genbank:YP_001531816.1,GeneID:5711383;gbkey=CDS;product=sensor histidine kinase;protein_id=YP_001531816.1;transl_table=11
NC_009952.1	RefSeq	gene	454509	455171	.	+	.	ID=gene475;Name=Dshi_0468;Dbxref=GeneID:5711384;gbkey=Gene;locus_tag=Dshi_0468
NC_009952.1	RefSeq	CDS	454509	455171	.	+	0	ID=cds464;Name=YP_001531817.1;Parent=gene475;Note=no significant swissprot%3B high Ref YP hit to hypothetical protein RD1_0882 from Roseobacter denitrificans OCh 114;Dbxref=Genbank:YP_001531817.1,GeneID:5711384;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531817.1;transl_table=11
NC_009952.1	RefSeq	gene	455168	455518	.	+	.	ID=gene476;Name=Dshi_0469;Dbxref=GeneID:5711385;gbkey=Gene;locus_tag=Dshi_0469
NC_009952.1	RefSeq	CDS	455168	455518	.	+	0	ID=cds465;Name=YP_001531818.1;Parent=gene476;Note=no significant swissprot%2C good ref YP hit to hypothetical protein RD1_0883 from Roseobacter denitrificans OCh 114%3B no conserved domains %28except from signalpep.%29;Dbxref=Genbank:YP_001531818.1,GeneID:5711385;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531818.1;transl_table=11
NC_009952.1	RefSeq	gene	455582	456454	.	-	.	ID=gene477;Name=soxZ;Dbxref=GeneID:5711386;gbkey=Gene;gene=soxZ;locus_tag=Dshi_0470
NC_009952.1	RefSeq	CDS	455582	456454	.	-	0	ID=cds466;Name=YP_001531819.1;Parent=gene477;Note=PFAM: Sulphur oxidation protein SoxZ %3B no significant swissprot%3B good Ref YP hit to Sulphur oxidation protein SoxZ from Sinorhizobium medicae WSM419%3B NCBI conserved domains: SoxZ and PRK07474%2C sulfur oxidation protein SoxY;Dbxref=Genbank:YP_001531819.1,GeneID:5711386;gbkey=CDS;gene=soxZ;product=sulfur oxidation protein SoxZ;protein_id=YP_001531819.1;transl_table=11
NC_009952.1	RefSeq	gene	456517	457557	.	+	.	ID=gene478;Name=Dshi_0471;Dbxref=GeneID:5711387;gbkey=Gene;locus_tag=Dshi_0471
NC_009952.1	RefSeq	CDS	456517	457557	.	+	0	ID=cds467;Name=YP_001531820.1;Parent=gene478;Note=PFAM: beta-lactamase domain protein%3B KEGG: rde:RD1_0885 hypothetical protein%3B no significant swissprot%2C unsure GC frame plot%3B high Ref YP hit to beta-lactamase domain protein from Sinorhizobium medicae WSM419%3B NCBI conserved domains: GloB%2C Zn-dependent hydrolases%2C including glyoxylases;Dbxref=Genbank:YP_001531820.1,GeneID:5711387;gbkey=CDS;product=beta-lactamase domain-containing protein;protein_id=YP_001531820.1;transl_table=11
NC_009952.1	RefSeq	gene	457583	458197	.	-	.	ID=gene479;Name=Dshi_0472;Dbxref=GeneID:5711388;gbkey=Gene;locus_tag=Dshi_0472
NC_009952.1	RefSeq	CDS	457583	458197	.	-	0	ID=cds468;Name=YP_001531821.1;Parent=gene479;Note=no significant swissprot%2C no conserved domains%2C high REf YP hit to hypothetical protein RD1_0886 from Roseobacter denitrificans OCh 114;Dbxref=Genbank:YP_001531821.1,GeneID:5711388;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531821.1;transl_table=11
NC_009952.1	RefSeq	gene	458365	459477	.	+	.	ID=gene480;Name=Dshi_0473;Dbxref=GeneID:5711389;gbkey=Gene;locus_tag=Dshi_0473
NC_009952.1	RefSeq	CDS	458365	459477	.	+	0	ID=cds469;Name=YP_001531822.1;Parent=gene480;Note=TIGRFAM: Alcohol dehydrogenase class III%2FS-%28hydroxymethyl%29glutathione dehydrogenase PFAM: Alcohol dehydrogenase zinc-binding domain protein%3B Alcohol dehydrogenase GroES domain protein%3B high swissprot hit to Alcohol dehydrogenase class-3 from Rhodobacter sphaeroides 2.4.1;Dbxref=Genbank:YP_001531822.1,GeneID:5711389;gbkey=CDS;product=alcohol dehydrogenase class III%2FS-%28hydroxymethyl%29glutathione dehydrogenase;protein_id=YP_001531822.1;transl_table=11
NC_009952.1	RefSeq	gene	459481	460308	.	+	.	ID=gene481;Name=Dshi_0474;Dbxref=GeneID:5711390;gbkey=Gene;locus_tag=Dshi_0474
NC_009952.1	RefSeq	CDS	459481	460308	.	+	0	ID=cds470;Name=YP_001531823.1;Parent=gene481;Note=KEGG: rde:RD1_0888 S-formylglutathione hydrolase%2C putative TIGRFAM: S-formylglutathione hydrolase PFAM: putative esterase%3B good swissprot hit to S-formylglutathione hydrolase from Mus musculus%3B high Ref YP hit to S-formylglutathione hydrolase%2C putative from Roseobacter denitrificans OCh 114;Dbxref=Genbank:YP_001531823.1,GeneID:5711390;gbkey=CDS;product=S-formylglutathione hydrolase;protein_id=YP_001531823.1;transl_table=11
NC_009952.1	RefSeq	gene	460328	460729	.	+	.	ID=gene482;Name=cytC;Dbxref=GeneID:5711391;gbkey=Gene;gene=cytC;locus_tag=Dshi_0475
NC_009952.1	RefSeq	CDS	460328	460729	.	+	0	ID=cds471;Name=YP_001531824.1;Parent=gene482;Note=PFAM: cytochrome c class I%3B low swissprot hit to Cytochrome c-552 from Paracoccus denitrificans%3B high Ref YP hit to cytochrome c family protein from Roseobacter denitrificans OCh 114;Dbxref=Genbank:YP_001531824.1,GeneID:5711391;gbkey=CDS;gene=cytC;product=cytochrome c class I;protein_id=YP_001531824.1;transl_table=11
NC_009952.1	RefSeq	gene	460857	462659	.	+	.	ID=gene483;Name=gcd;Dbxref=GeneID:5711392;gbkey=Gene;gene=gcd;locus_tag=Dshi_0476
NC_009952.1	RefSeq	CDS	460857	462659	.	+	0	ID=cds472;Name=YP_001531825.1;Parent=gene483;Note=PFAM: Pyrrolo-quinoline quinone%3B high swissprot hit to Putative dehydrogenase xoxF precursor from Paracoccus denitrificans%3B high Ref YP hit to Pyrrolo-quinoline quinone from Rhodobacter sphaeroides ATCC 17025%3B NCBI conserved domains: pqqDH;Dbxref=Genbank:YP_001531825.1,GeneID:5711392;gbkey=CDS;gene=gcd;product=quinoprotein glucose dehydrogenase;protein_id=YP_001531825.1;transl_table=11
NC_009952.1	RefSeq	gene	462744	463289	.	+	.	ID=gene484;Name=cccA;Dbxref=GeneID:5711393;gbkey=Gene;gene=cccA;locus_tag=Dshi_0477
NC_009952.1	RefSeq	CDS	462744	463289	.	+	0	ID=cds473;Name=YP_001531826.1;Parent=gene484;Note=SSF46626 Cytochrome c%2C monohaem%3B NCBI conserved domains: CccA%2C Cytochrome c%2C mono- and diheme variants%2C good swissprot hit to Cytochrome c-553I precursor from Paracoccus denitrificans%3B good Ref ZP hit to putative cytochrome c protein from Sagittula stellata E-37;Dbxref=Genbank:YP_001531826.1,GeneID:5711393;gbkey=CDS;gene=cccA;product=cytochrome c protein;protein_id=YP_001531826.1;transl_table=11
NC_009952.1	RefSeq	gene	463273	464121	.	+	.	ID=gene485;Name=cccA;Dbxref=GeneID:5711394;gbkey=Gene;gene=cccA;locus_tag=Dshi_0478
NC_009952.1	RefSeq	CDS	463273	464121	.	+	0	ID=cds474;Name=YP_001531827.1;Parent=gene485;Note=SMART: extracellular solute-binding protein family %3B NCBI conserved domains: PbPb%3B low swissprot hit to Protein moxJ precursor from Methylobacterium extorquens %28May be involved in the assemblage of active methanoldehydrogenase and%2For its cofactor PQQ in the periplasm%29%3B high Ref YP hit to putative methanol oxidation protein from Roseobacter denitrificans OCh 114;Dbxref=Genbank:YP_001531827.1,GeneID:5711394;gbkey=CDS;product=family 3 extracellular solute-binding protein;protein_id=YP_001531827.1;transl_table=11
NC_009952.1	RefSeq	gene	464118	464666	.	+	.	ID=gene486;Name=Dshi_0479;Dbxref=GeneID:5711395;gbkey=Gene;locus_tag=Dshi_0479
NC_009952.1	RefSeq	CDS	464118	464666	.	+	0	ID=cds475;Name=YP_001531828.1;Parent=gene486;Note=no significant swissprot%2C unsure GC frame plot%2C good gb hit to hypothetical protein RLO149_07849 from Roseobacter litoralis Och 149%3B NCBI conserved domains: RHOD%2C Rhodanese Homology Domain %28RHOD%29%3B an alpha beta fold domain found duplicated in the rhodanese protein;Dbxref=Genbank:YP_001531828.1,GeneID:5711395;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531828.1;transl_table=11
NC_009952.1	RefSeq	gene	464801	465967	.	+	.	ID=gene487;Name=Dshi_0480;Dbxref=GeneID:5711396;gbkey=Gene;locus_tag=Dshi_0480
NC_009952.1	RefSeq	CDS	464801	465967	.	+	0	ID=cds476;Name=YP_001531829.1;Parent=gene487;Note=no significant swissprot%2C unsure GC frame plot%3B middle gb hit to hypothetical protein RLO149_03449 from Roseobacter litoralis Och 149%3B no conserved domains detected %28except for one signalpep. and transmemb. region%29;Dbxref=Genbank:YP_001531829.1,GeneID:5711396;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531829.1;transl_table=11
NC_009952.1	RefSeq	gene	466019	466831	.	-	.	ID=gene488;Name=Dshi_0481;Dbxref=GeneID:5711397;gbkey=Gene;locus_tag=Dshi_0481
NC_009952.1	RefSeq	CDS	466019	466831	.	-	0	ID=cds477;Name=YP_001531830.1;Parent=gene488;Note=no significant swissprot%2C high Ref YP hit to hypothetical protein RD1_0894 from Roseobacter denitrificans OCh 114%3B NCBI conserved domains: COG5501%2C Predicted secreted protein;Dbxref=Genbank:YP_001531830.1,GeneID:5711397;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531830.1;transl_table=11
NC_009952.1	RefSeq	gene	467299	467784	.	-	.	ID=gene489;Name=Dshi_0482;Dbxref=GeneID:5711398;gbkey=Gene;locus_tag=Dshi_0482
NC_009952.1	RefSeq	CDS	467299	467784	.	-	0	ID=cds478;Name=YP_001531831.1;Parent=gene489;Note=no significant swissprot%2C unsure GC frame plot%3B no conserved domains%3B good Ref YP hit to hypothetical protein RD1_0897 from Roseobacter denitrificans OCh 114;Dbxref=Genbank:YP_001531831.1,GeneID:5711398;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531831.1;transl_table=11
NC_009952.1	RefSeq	gene	467943	469130	.	+	.	ID=gene490;Name=Dshi_0483;Dbxref=GeneID:5711399;gbkey=Gene;locus_tag=Dshi_0483
NC_009952.1	RefSeq	CDS	467943	469130	.	+	0	ID=cds479;Name=YP_001531832.1;Parent=gene490;Note=no significant swissprot%2C unsure GC frame plot %28N-terminal%29%3B SSF53822 Periplasmic binding protein-like I%3B high gb hit to hypothetical protein RLO149_07824 %5BRoseobacter litoralis Och 149%5D;Dbxref=Genbank:YP_001531832.1,GeneID:5711399;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531832.1;transl_table=11
NC_009952.1	RefSeq	gene	469158	470129	.	+	.	ID=gene491;Name=Dshi_0484;Dbxref=GeneID:5711400;gbkey=Gene;locus_tag=Dshi_0484
NC_009952.1	RefSeq	CDS	469158	470129	.	+	0	ID=cds480;Name=YP_001531833.1;Parent=gene491;Note=TIGRFAM: 40-residue YVTN family beta-propeller repeat protein%3B SSF50969 Quinoprotein amine dehydrogenase%2C beta chain-like%2C no significant swissprot%2C high Ref YP hit to 40-residue YVTN family beta-propeller repeat protein from Sinorhizobium medicae WSM419;Dbxref=Genbank:YP_001531833.1,GeneID:5711400;gbkey=CDS;product=40-residue YVTN family beta-propeller repeat-containing protein;protein_id=YP_001531833.1;transl_table=11
NC_009952.1	RefSeq	gene	470179	470616	.	+	.	ID=gene492;Name=Dshi_0485;Dbxref=GeneID:5711401;gbkey=Gene;locus_tag=Dshi_0485
NC_009952.1	RefSeq	CDS	470179	470616	.	+	0	ID=cds481;Name=YP_001531834.1;Parent=gene492;Note=no significant swissprot%2C no conserved domains%2C high Ref YP hit to hypothetical protein RD1_0900 %5BRoseobacter denitrificans OCh 114%5D;Dbxref=Genbank:YP_001531834.1,GeneID:5711401;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531834.1;transl_table=11
NC_009952.1	RefSeq	gene	470635	470883	.	+	.	ID=gene493;Name=Dshi_0486;Dbxref=GeneID:5711402;gbkey=Gene;locus_tag=Dshi_0486
NC_009952.1	RefSeq	CDS	470635	470883	.	+	0	ID=cds482;Name=YP_001531835.1;Parent=gene493;Note=no significant swissprot%2C no conserved domains%2C middle gb hit to hypothetical protein RLO149_07809 %5BRoseobacter litoralis Och 149%5D.;Dbxref=Genbank:YP_001531835.1,GeneID:5711402;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531835.1;transl_table=11
NC_009952.1	RefSeq	gene	471449	472675	.	-	.	ID=gene494;Name=Dshi_0487;Dbxref=GeneID:5711403;gbkey=Gene;locus_tag=Dshi_0487
NC_009952.1	RefSeq	CDS	471449	472675	.	-	0	ID=cds483;Name=YP_001531836.1;Parent=gene494;Note=no significant swissprot%3B bad Ref XP hit to TPR repeat protein %5BEntamoeba histolytica HM-1:IMSS%5D%3B InterPro Scan: G3DSA:1.25.40.10 Tetratricopeptide-like helical;Dbxref=Genbank:YP_001531836.1,GeneID:5711403;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531836.1;transl_table=11
NC_009952.1	RefSeq	gene	472665	473018	.	-	.	ID=gene495;Name=Dshi_0488;Dbxref=GeneID:5711404;gbkey=Gene;locus_tag=Dshi_0488
NC_009952.1	RefSeq	CDS	472665	473018	.	-	0	ID=cds484;Name=YP_001531837.1;Parent=gene495;Note=no significant BLAST hits%2C no conserved domains %28except for two transmembr. regions%29%3B good RBS site : AGGAT;Dbxref=Genbank:YP_001531837.1,GeneID:5711404;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531837.1;transl_table=11
NC_009952.1	RefSeq	gene	473039	474289	.	-	.	ID=gene496;Name=Dshi_0489;Dbxref=GeneID:5711405;gbkey=Gene;locus_tag=Dshi_0489
NC_009952.1	RefSeq	CDS	473039	474289	.	-	0	ID=cds485;Name=YP_001531838.1;Parent=gene496;Note=no significant BLAST hits%2C unsure GC frame plot%3B NCBI conserved domains: mncomplete BisC domain%2C Anaerobic dehydrogenases%2C typically selenocysteine-containing;Dbxref=Genbank:YP_001531838.1,GeneID:5711405;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531838.1;transl_table=11
NC_009952.1	RefSeq	gene	475571	475996	.	+	.	ID=gene497;Name=Dshi_0490;Dbxref=GeneID:5711406;gbkey=Gene;locus_tag=Dshi_0490
NC_009952.1	RefSeq	CDS	475571	475996	.	+	0	ID=cds486;Name=YP_001531839.1;Parent=gene497;Note=low swissprot hit to Inner membrane protein ybaN from Escherichia coli K12%3B low Ref YP hit toprotein of unknown function DUF454 from Rhodobacter sphaeroides ATCC 17029%3B PF04304 Protein of unknown function DUF454%3B NCBI conserved domains: DUF454%2C Protein of unknown function %28DUF454%29. Predicted membrane protein%3B unsure GC frame plot;Dbxref=Genbank:YP_001531839.1,GeneID:5711406;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531839.1;transl_table=11
NC_009952.1	RefSeq	gene	476139	477122	.	+	.	ID=gene498;Name=ssuA1;Dbxref=GeneID:5711407;gbkey=Gene;gene=ssuA1;locus_tag=Dshi_0491
NC_009952.1	RefSeq	CDS	476139	477122	.	+	0	ID=cds487;Name=YP_001531840.1;Parent=gene498;Note=low swissprot hit to Putative aliphatic sulfonates-binding protein precursor from Escherichia coli K12%3B good Ref YP hit toTwin-arginine translocation pathway signal %5BParacoccus denitrificans PD1222%5D%3B COG0715 - ABC-type nitrate%2Fsulfonate%2Fbicarbonate transport systems%2C periplasmic components%3BTIGR01409 Twin-arginine translocation pathway signal;Dbxref=Genbank:YP_001531840.1,GeneID:5711407;gbkey=CDS;gene=ssuA1;product=putative sulfonate%2Fnitrate transport system substrate-binding protein;protein_id=YP_001531840.1;transl_table=11
NC_009952.1	RefSeq	gene	477181	478005	.	+	.	ID=gene499;Name=ssuC1;Dbxref=GeneID:5711408;gbkey=Gene;gene=ssuC1;locus_tag=Dshi_0492
NC_009952.1	RefSeq	CDS	477181	478005	.	+	0	ID=cds488;Name=YP_001531841.1;Parent=gene499;Note=PFAM: binding-protein-dependent transport systems inner membrane component%3B COG0600%2C TauC%2C ABC-type nitrate%2Fsulfonate%2Fbicarbonate transport system%2C permease component%3B low swissprot toNitrate transport permease protein nrtB from Phormidium laminosum%3B high Ref ZP hit toBinding-protein-dependent transport systems inner membrane component %5BParacoccus denitrificans PD1222%5D;Dbxref=Genbank:YP_001531841.1,GeneID:5711408;gbkey=CDS;gene=ssuC1;product=sulfonate%2Fnitrate%2Ftaurine transport system permease;protein_id=YP_001531841.1;transl_table=11
NC_009952.1	RefSeq	gene	478002	478751	.	+	.	ID=gene500;Name=ssuB1;Dbxref=GeneID:5711409;gbkey=Gene;gene=ssuB1;locus_tag=Dshi_0493
NC_009952.1	RefSeq	CDS	478002	478751	.	+	0	ID=cds489;Name=YP_001531842.1;Parent=gene500;Note=PFAM: ABC transporter related SMART: AAA ATPase%3B COG1116 - ABC-type nitrate%2Fsulfonate%2Fbicarbonate transport system%2C ATPase component%3B NCBI conserved domains: ssuB%3B middle swissprot hit to Aliphatic sulfonates import ATP-binding protein ssuB 1 from Xanthomonas axonopodis pv. citri%3B good Ref ZP hit to ABC transporter %5BParacoccus denitrificans PD1222%5D;Dbxref=Genbank:YP_001531842.1,GeneID:5711409;gbkey=CDS;gene=ssuB1;product=sulfonate%2Fnitrate%2Ftaurine transport system ATP-binding;protein_id=YP_001531842.1;transl_table=11
NC_009952.1	RefSeq	gene	478748	480028	.	+	.	ID=gene501;Name=nnrS;Dbxref=GeneID:5711410;gbkey=Gene;gene=nnrS;locus_tag=Dshi_0494
NC_009952.1	RefSeq	CDS	478748	480028	.	+	0	ID=cds490;Name=YP_001531843.1;Parent=gene501;Note=PFAM: NnrS family protein KEGG: pde:Pden_4166 NnrS family protein%3B no swissprot%3B good gb hit to NnrS %5BRhodobacter capsulatus%5D%3B NCBI conserved domains: NnrS;Dbxref=Genbank:YP_001531843.1,GeneID:5711410;gbkey=CDS;gene=nnrS;product=NnrS family protein;protein_id=YP_001531843.1;transl_table=11
NC_009952.1	RefSeq	gene	480087	480497	.	+	.	ID=gene502;Name=Dshi_0495;Dbxref=GeneID:5711411;gbkey=Gene;locus_tag=Dshi_0495
NC_009952.1	RefSeq	CDS	480087	480497	.	+	0	ID=cds491;Name=YP_001531844.1;Parent=gene502;Note=no significant swissprot%3B low Ref NP hit to ferrienterobactin-like protein %5BAgrobacterium tumefaciens str. C58%5D%3B Pfam07715 TonB-dependent Receptor Plug Domain;Dbxref=Genbank:YP_001531844.1,GeneID:5711411;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531844.1;transl_table=11
NC_009952.1	RefSeq	gene	480704	482722	.	-	.	ID=gene503;Name=Dshi_0496;Dbxref=GeneID:5711412;gbkey=Gene;locus_tag=Dshi_0496
NC_009952.1	RefSeq	CDS	480704	482722	.	-	0	ID=cds492;Name=YP_001531845.1;Parent=gene503;Note=PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein%3B no significant swissprot%2C unsure GC frame plot%3B high Ref ZP hit to putative ferredoxin %5BLoktanella vestfoldensis SKA53%5D;Dbxref=Genbank:YP_001531845.1,GeneID:5711412;gbkey=CDS;product=4Fe-4S ferredoxin;protein_id=YP_001531845.1;transl_table=11
NC_009952.1	RefSeq	gene	482822	483556	.	+	.	ID=gene504;Name=Dshi_0497;Dbxref=GeneID:5711413;gbkey=Gene;locus_tag=Dshi_0497
NC_009952.1	RefSeq	CDS	482822	483556	.	+	0	ID=cds493;Name=YP_001531846.1;Parent=gene504;Note=no significant swissprot%2C unsure GC frame plot%2C no conserved domains%3B good Ref ZP hit to hypothetical protein SKA53_09144 %5BLoktanella vestfoldensis SKA53%5D;Dbxref=Genbank:YP_001531846.1,GeneID:5711413;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531846.1;transl_table=11
NC_009952.1	RefSeq	gene	483553	484110	.	+	.	ID=gene505;Name=Dshi_0498;Dbxref=GeneID:5711414;gbkey=Gene;locus_tag=Dshi_0498
NC_009952.1	RefSeq	CDS	483553	484110	.	+	0	ID=cds494;Name=YP_001531847.1;Parent=gene505;Note=no significant swissprot%3B unsure GC frame plot%3B no conserved domains%3B good Ref ZP hit to hypothetical protein SKA53_09139 %5BLoktanella vestfoldensis SKA53%5D;Dbxref=Genbank:YP_001531847.1,GeneID:5711414;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531847.1;transl_table=11
NC_009952.1	RefSeq	gene	484107	485120	.	+	.	ID=gene506;Name=Dshi_0499;Dbxref=GeneID:5711415;gbkey=Gene;locus_tag=Dshi_0499
NC_009952.1	RefSeq	CDS	484107	485120	.	+	0	ID=cds495;Name=YP_001531848.1;Parent=gene506;Note=no significant swissprot%2C unsure GC frame plot%3B no conserved domains%3B high Ref ZP hit to hypothetical protein SKA53_09134 %5BLoktanella vestfoldensis SKA53%5D;Dbxref=Genbank:YP_001531848.1,GeneID:5711415;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531848.1;transl_table=11
NC_009952.1	RefSeq	gene	485120	485656	.	+	.	ID=gene507;Name=Dshi_0500;Dbxref=GeneID:5711416;gbkey=Gene;locus_tag=Dshi_0500
NC_009952.1	RefSeq	CDS	485120	485656	.	+	0	ID=cds496;Name=YP_001531849.1;Parent=gene507;Note=no significant swissprot%3B no conserved domains%3B unsure GC frame plot%3B low Ref ZP hit to molybdopterin-guanine dinucleotide biosynthesis protein A from Methylobacterium extorquens PA1;Dbxref=Genbank:YP_001531849.1,GeneID:5711416;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531849.1;transl_table=11
NC_009952.1	RefSeq	gene	485653	486264	.	+	.	ID=gene508;Name=Dshi_0501;Dbxref=GeneID:5711417;gbkey=Gene;locus_tag=Dshi_0501
NC_009952.1	RefSeq	CDS	485653	486264	.	+	0	ID=cds497;Name=YP_001531850.1;Parent=gene508;Note=no significant swissprot%2C no conserved domains%3B low Ref ZP hit to hypothetical protein SKA53_09124 %5BLoktanella vestfoldensis SKA53%5D.;Dbxref=Genbank:YP_001531850.1,GeneID:5711417;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531850.1;transl_table=11
NC_009952.1	RefSeq	gene	486380	487042	.	+	.	ID=gene509;Name=torD;Dbxref=GeneID:5711418;gbkey=Gene;gene=torD;locus_tag=Dshi_0502
NC_009952.1	RefSeq	CDS	486380	487042	.	+	0	ID=cds498;Name=YP_001531851.1;Parent=gene509;Note=PFAM: cytoplasmic chaperone TorD family protein%3B low swissprot to Chaperone protein torD from Vibrio cholerae and high Ref ZP hit toputative chaperone %5BLoktanella vestfoldensis SKA53%5D%3B NCBI conserved domains: torD;Dbxref=Genbank:YP_001531851.1,GeneID:5711418;gbkey=CDS;gene=torD;product=cytoplasmic chaperone TorD family protein;protein_id=YP_001531851.1;transl_table=11
NC_009952.1	RefSeq	gene	487101	487310	.	+	.	ID=gene510;Name=Dshi_0503;Dbxref=GeneID:5711419;gbkey=Gene;locus_tag=Dshi_0503
NC_009952.1	RefSeq	CDS	487101	487310	.	+	0	ID=cds499;Name=YP_001531852.1;Parent=gene510;Note=no significant swissprot%3B bad Ref ZP hit to hypothetical protein SKA53_09114 %5BLoktanella vestfoldensis SKA53%5D%3B no conserved domains %28except for one transmem. region%29;Dbxref=Genbank:YP_001531852.1,GeneID:5711419;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531852.1;transl_table=11
NC_009952.1	RefSeq	gene	487314	490274	.	+	.	ID=gene511;Name=fdnG;Dbxref=GeneID:5711420;gbkey=Gene;gene=fdnG;locus_tag=Dshi_0504
NC_009952.1	RefSeq	CDS	487314	490274	.	+	0	ID=cds500;Name=YP_001531853.1;Parent=gene511;Note=PFAM: molybdopterin oxidoreductase%3B molydopterin dinucleotide-binding region%3B molybdopterin oxidoreductase Fe4S4%3B high swissprot hit to Formate dehydrogenase alpha chain from Methanocaldococcus jannaschii%3B high Ref ZP hit to formate dehydrogenase%2C alpha subunit%2C putative %5BLoktanella vestfoldensis SKA53%5D%3B NCBI conserved domains: mopB;Dbxref=Genbank:YP_001531853.1,GeneID:5711420;gbkey=CDS;gene=fdnG;product=formate dehydrogenase subunit alpha;protein_id=YP_001531853.1;transl_table=11
NC_009952.1	RefSeq	gene	490289	490885	.	+	.	ID=gene512;Name=fdnH;Dbxref=GeneID:5711421;gbkey=Gene;gene=fdnH;locus_tag=Dshi_0505
NC_009952.1	RefSeq	CDS	490289	490885	.	+	0	ID=cds501;Name=YP_001531854.1;Parent=gene512;Note=PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein%3B good swissprot hit to Formate dehydrogenase iron-sulfur subunit from Wolinella succinogenes%3B high Ref ZP hit to formate dehydrogenase iron-sulfur subunit %5BLoktanella vestfoldensis SKA53%5D%3B NCBI conserved domains: HybA%2C Fe-S-cluster-containing hydrogenase components 1;Dbxref=Genbank:YP_001531854.1,GeneID:5711421;gbkey=CDS;gene=fdnH;product=formate dehydrogenase iron-sulfur subunit;protein_id=YP_001531854.1;transl_table=11
NC_009952.1	RefSeq	gene	490899	491927	.	+	.	ID=gene513;Name=fdnI;Dbxref=GeneID:5711422;gbkey=Gene;gene=fdnI;locus_tag=Dshi_0506
NC_009952.1	RefSeq	CDS	490899	491927	.	+	0	ID=cds502;Name=YP_001531855.1;Parent=gene513;Note=TIGRFAM: formate dehydrogenase%2C gamma subunit%3B middle swissprot hit to Formate dehydrogenase%2C nitrate-inducible%2C cytochrome b556%28fdn%29 subunit %28Formate dehydrogenase-N subunit gamma%29 from Escherichia coli K12%3B high Ref ZP hit to putative formate dehydrogenase %5BLoktanella vestfoldensis SKA53%5D%3B NCBI conserved domains: fdnI;Dbxref=Genbank:YP_001531855.1,GeneID:5711422;gbkey=CDS;gene=fdnI;product=formate dehydrogenase subunit gamma;protein_id=YP_001531855.1;transl_table=11
NC_009952.1	RefSeq	gene	492087	493133	.	+	.	ID=gene514;Name=Dshi_0507;Dbxref=GeneID:5711423;gbkey=Gene;locus_tag=Dshi_0507
NC_009952.1	RefSeq	CDS	492087	493133	.	+	0	ID=cds503;Name=YP_001531856.1;Parent=gene514;Note=high swissprot hit to Protein mrp homolog from Haemophilus influenzae%3B high Ref ZP hit to probable multidrug-resistance related protein %5BLoktanella Loktanella vestfoldensis SKA53%5D%3B InterPro Scan: PS01215 Mrp%3B NCBI conserved domains: mrp-like%3B ATP%2FGTP-binding protein;Dbxref=Genbank:YP_001531856.1,GeneID:5711423;gbkey=CDS;product=MRP-like protein;protein_id=YP_001531856.1;transl_table=11
NC_009952.1	RefSeq	gene	493317	494531	.	+	.	ID=gene515;Name=Dshi_0508;Dbxref=GeneID:5711424;gbkey=Gene;locus_tag=Dshi_0508
NC_009952.1	RefSeq	CDS	493317	494531	.	+	0	ID=cds504;Name=YP_001531857.1;Parent=gene515;Note=PFAM: cytochrome c class I%3B SMART: WD-40 repeat protein%2C unsure GC frame plot%3B low swissprot hit to Cytochrome c from Cochliobolus lunatus%3B good Ref ZP hit to cytochrome c%2C class I %5BMethylobacterium extorquens PA1%5D%3B NCBI conserved domains: WD40;Dbxref=Genbank:YP_001531857.1,GeneID:5711424;gbkey=CDS;product=cytochrome c class I;protein_id=YP_001531857.1;transl_table=11
NC_009952.1	RefSeq	gene	494625	495407	.	-	.	ID=gene516;Name=Dshi_0509;Dbxref=GeneID:5711425;gbkey=Gene;locus_tag=Dshi_0509
NC_009952.1	RefSeq	CDS	494625	495407	.	-	0	ID=cds505;Name=YP_001531858.1;Parent=gene516;Note=no significant swissprot%2C no conserved domains %28except for one signalpep.%29%3B unsure GC frame plot%3B good Ref YP hit to hypothetical protein Spro_3113 %5BSerratia proteamaculans 568%5D.;Dbxref=Genbank:YP_001531858.1,GeneID:5711425;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531858.1;transl_table=11
NC_009952.1	RefSeq	gene	495589	496662	.	-	.	ID=gene517;Name=Dshi_0510;Dbxref=GeneID:5711426;gbkey=Gene;locus_tag=Dshi_0510
NC_009952.1	RefSeq	CDS	495589	496662	.	-	0	ID=cds506;Name=YP_003422323.1;Parent=gene517;Note=good swissprot hit to Alkyl%2Faryl-sulfatase BDS1 %28Bacterially-derived sulfatase 1%29 from Saccharomyces cerevisiae%2C high Ref ZP hit to beta-lactamase domain protein %5BMethylobacterium sp. 4-46%5D%3BInterPRo Scan: Tetratricopeptide region TPR%3B NCBI conserved domains: COG2015%2C Alkyl sulfatase and related hydrolases;Dbxref=Genbank:YP_003422323.1,GeneID:5711426;gbkey=CDS;product=beta-lactamase;protein_id=YP_003422323.1;transl_table=11
NC_009952.1	RefSeq	gene	496690	496893	.	-	.	ID=gene518;Name=Dshi_0511;Dbxref=GeneID:8130634;gbkey=Gene;locus_tag=Dshi_0511
NC_009952.1	RefSeq	CDS	496690	496893	.	-	0	ID=cds507;Name=YP_003422324.1;Parent=gene518;Note=may be part of Gene Dshi_0510%3B low swissprot hit to Alkyl%2Faryl-sulfatase BDS1 %28Bacterially-derived sulfatase 1%29 from Saccharomyces cerevisiae%3B middle Ref YP hit to metallo-beta-lactamase superfamily protein %5BAzorhizobium caulinodans ORS 571%5D%3B NCBI conserved domains: COG2015%2C Alkyl sulfatase and related hydrolases%3B InterPro Scan: no hits reported;Dbxref=Genbank:YP_003422324.1,GeneID:8130634;gbkey=CDS;product=hypothetical protein;protein_id=YP_003422324.1;transl_table=11
NC_009952.1	RefSeq	gene	496905	497582	.	-	.	ID=gene519;Name=Dshi_0512;Dbxref=GeneID:5711427;gbkey=Gene;locus_tag=Dshi_0512
NC_009952.1	RefSeq	CDS	496905	497582	.	-	0	ID=cds508;Name=YP_001531859.1;Parent=gene519;Note=pfam00753%2C Lactamase_B%2C Metallo-beta-lactamase superfamily%3B COG2333%2C ComEC%2C Predicted hydrolase%3B low swissprot hit to Alkyl%2Faryl-sulfatase BDS1 %28Bacterially-derived sulfatase 1%29 from Saccharomyces cerevisiae%3B good Ref YP hit to beta-lactamase domain protein %5BPolynucleobacter sp. QLW-P1DMWA-1%5D;Dbxref=Genbank:YP_001531859.1,GeneID:5711427;gbkey=CDS;product=beta-lactamase domain-containing protein;protein_id=YP_001531859.1;transl_table=11
NC_009952.1	RefSeq	gene	498319	498786	.	-	.	ID=gene520;Name=Dshi_0513;Dbxref=GeneID:5711428;gbkey=Gene;locus_tag=Dshi_0513
NC_009952.1	RefSeq	CDS	498319	498786	.	-	0	ID=cds509;Name=YP_001531860.1;Parent=gene520;Note=pfam00196%2C GerE%2C Bacterial regulatory proteins%2C luxR family%3B low swissprot hit to Transcriptional regulatory protein fixJ from Sinorhizobium meliloti%3B middle Ref ZP hit to putative two-component response regulator %5BRoseovarius sp. HTCC2601%5D%2C unsure GC frame plot%3B LuxR family;Dbxref=Genbank:YP_001531860.1,GeneID:5711428;gbkey=CDS;product=transcriptional regulator;protein_id=YP_001531860.1;transl_table=11
NC_009952.1	RefSeq	gene	498765	498947	.	-	.	ID=gene521;Name=Dshi_0514;Dbxref=GeneID:5711429;gbkey=Gene;locus_tag=Dshi_0514
NC_009952.1	RefSeq	CDS	498765	498947	.	-	0	ID=cds510;Name=YP_001531861.1;Parent=gene521;Note=bad swissprot to Transcriptional regulatory protein fixJ from Azorhizobium caulinodans%3B low Ref ZP hit to putative two-component response regulator %5BRoseovarius sp. HTCC2601%5D%3B PFAM00072 response regulator receiver%3B COG4566%2C TtrR%2C Response regulator;Dbxref=Genbank:YP_001531861.1,GeneID:5711429;gbkey=CDS;product=response regulator receiver protein;protein_id=YP_001531861.1;transl_table=11
NC_009952.1	RefSeq	gene	498944	499843	.	-	.	ID=gene522;Name=Dshi_0515;Dbxref=GeneID:5711430;gbkey=Gene;locus_tag=Dshi_0515
NC_009952.1	RefSeq	CDS	498944	499843	.	-	0	ID=cds511;Name=YP_001531862.1;Parent=gene522;Note=unsure GC frame plot%3B - PFAM: ATP-binding region ATPase domain protein%3B histidine kinase A domain protein%3B NCBI conserved domains: HisKA%3B middle swissprot hit to Sensor protein fixL%3B good Ref ZP hit to probable sensor histidine kinase of two-component system from Roseovarius sp. HTCC2601;Dbxref=Genbank:YP_001531862.1,GeneID:5711430;gbkey=CDS;product=histidine kinase;protein_id=YP_001531862.1;transl_table=11
NC_009952.1	RefSeq	gene	499850	500836	.	-	.	ID=gene523;Name=Dshi_0516;Dbxref=GeneID:5711431;gbkey=Gene;locus_tag=Dshi_0516
NC_009952.1	RefSeq	CDS	499850	500836	.	-	0	ID=cds512;Name=YP_001531863.1;Parent=gene523;Note=pfam04392%2C ABC_sub_bind%2C ABC transporter substrate binding protein%3B no significant swissprot%3B good Ref ZP hit to probable sensor histidine kinase of two-component system from Roseovarius sp. HTCC2601%3B unsure GC frame plot;Dbxref=Genbank:YP_001531863.1,GeneID:5711431;gbkey=CDS;product=putative two-component sensor kinase;protein_id=YP_001531863.1;transl_table=11
NC_009952.1	RefSeq	gene	501109	502149	.	-	.	ID=gene524;Name=araF2;Dbxref=GeneID:5711432;gbkey=Gene;gene=araF2;locus_tag=Dshi_0517
NC_009952.1	RefSeq	CDS	501109	502149	.	-	0	ID=cds513;Name=YP_001531864.1;Parent=gene524;Note=PFAM: periplasmic binding protein%2FLacI transcriptional regulator%3B COG4213%2C XylF%2C ABC-type xylose transport system%2C periplasmic component%3B low swissprot hit to D-ribose-binding protein precursor from Bacillus subtilis%3B High Ref YP Hit to sugar ABC transporter%2C substrate-binding protein%2C putative from Roseobacter denitrificans OCh 114%3B periplasmic component;Dbxref=Genbank:YP_001531864.1,GeneID:5711432;gbkey=CDS;gene=araF2;product=ribose%2Fxylose%2Farabinose%2Fgalactoside ABC-type transport system protein;protein_id=YP_001531864.1;transl_table=11
NC_009952.1	RefSeq	gene	502175	503185	.	-	.	ID=gene525;Name=araH1;Dbxref=GeneID:5711433;gbkey=Gene;gene=araH1;locus_tag=Dshi_0518
NC_009952.1	RefSeq	CDS	502175	503185	.	-	0	ID=cds514;Name=YP_001531865.1;Parent=gene525;Note=PFAM: inner-membrane translocator%3B NCBI conserved domains: COG1172%2C AraH%2C Ribose%2Fxylose%2Farabinose%2Fgalactoside ABC-type transport systems%2C permease components%3B PRK09512%2C rbsC%2C ribose ABC transporter permease protein%3B middle swissprot hit to Ribose transport system permease protein rbsC from Bacillus subtilis%3B High gb hit to ribose ABC transporter%2C permease protein %5BRoseob%3B permease components;Dbxref=Genbank:YP_001531865.1,GeneID:5711433;gbkey=CDS;gene=araH1;product=ribose%2Fxylose%2Farabinose%2Fgalactoside ABC-type transport system protein;protein_id=YP_001531865.1;transl_table=11
NC_009952.1	RefSeq	gene	503182	504678	.	-	.	ID=gene526;Name=araG1;Dbxref=GeneID:5711434;gbkey=Gene;gene=araG1;locus_tag=Dshi_0519
NC_009952.1	RefSeq	CDS	503182	504678	.	-	0	ID=cds515;Name=YP_001531866.1;Parent=gene526;Note=PFAM: ABC transporter related SMART: AAA ATPase%2C high swissprot to Arabinose import ATP-binding protein araG from Pseudomonas syringae pv. tomato%3B high gb hit to sugar uptake ABC transporter ATP-binding protein from Roseobacter litoralis Och 149%3B ATP-binding;Dbxref=Genbank:YP_001531866.1,GeneID:5711434;gbkey=CDS;gene=araG1;product=ribose%2Fxylose%2Farabinose%2Fgalactoside ABC-type transport system protein;protein_id=YP_001531866.1;transl_table=11
NC_009952.1	RefSeq	gene	504830	506089	.	+	.	ID=gene527;Name=mtnK;Dbxref=GeneID:5711973;gbkey=Gene;gene=mtnK;locus_tag=Dshi_0520
NC_009952.1	RefSeq	CDS	504830	506089	.	+	0	ID=cds516;Name=YP_001531867.1;Parent=gene527;Note=phosphorylates methylthioribose to form methylthioribose-1-phosphate%3B involved in methionine salvage pathway;Dbxref=Genbank:YP_001531867.1,GeneID:5711973;gbkey=CDS;gene=mtnK;product=methylthioribose kinase;protein_id=YP_001531867.1;transl_table=11
NC_009952.1	RefSeq	gene	506086	507189	.	+	.	ID=gene528;Name=mtnA;Dbxref=GeneID:5711974;gbkey=Gene;gene=mtnA;locus_tag=Dshi_0521
NC_009952.1	RefSeq	CDS	506086	507189	.	+	0	ID=cds517;Name=YP_001531868.1;Parent=gene528;Note=isomerizes methylthioribose-1-phosphate into methylthioribulose-1-phosphate%3B involved in methionine salvage pathway;Dbxref=Genbank:YP_001531868.1,GeneID:5711974;gbkey=CDS;gene=mtnA;product=methylthioribose-1-phosphate isomerase;protein_id=YP_001531868.1;transl_table=11
NC_009952.1	RefSeq	gene	507247	508206	.	+	.	ID=gene529;Name=deoR3;Dbxref=GeneID:5711975;gbkey=Gene;gene=deoR3;locus_tag=Dshi_0522
NC_009952.1	RefSeq	CDS	507247	508206	.	+	0	ID=cds518;Name=YP_001531869.1;Parent=gene529;Note=PFAM: putative sugar-binding domain protein%3B NCBI conserved domains: pfam04198%2C Sugar-bind%2C Putative sugar-binding domain%3B COG2390%2C DeoR%2C Transcriptional regulator%2C contains sigma factor-related N-terminal domain%2C good swissprot hit to Uncharacterized transcriptional regulator yjhU from Escherichia coli K12 %28related to SorC%29%3B high Ref YP hit to transcriptional regulator%2C putative %5BRoseobacter denitrificans OCh 114%5D%3B DeoR family;Dbxref=Genbank:YP_001531869.1,GeneID:5711975;gbkey=CDS;gene=deoR3;product=transcriptional regulator;protein_id=YP_001531869.1;transl_table=11
NC_009952.1	RefSeq	gene	508203	508898	.	+	.	ID=gene530;Name=fucA;Dbxref=GeneID:5711976;gbkey=Gene;gene=fucA;locus_tag=Dshi_0523
NC_009952.1	RefSeq	CDS	508203	508898	.	+	0	ID=cds519;Name=YP_001531870.1;Parent=gene530;Note=PFAM: class II aldolase%2Fadducin family protein%3B COG0235%2C AraD%2C Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases%3B good swissprot hit to L-fuculose phosphate aldolase from Escherichia coli K12%3B good Ref ZP hit to L-fuculose phosphate aldolase %5BStappia aggregata IAM 12614%5D%3B unsure GC frame plot;Dbxref=Genbank:YP_001531870.1,GeneID:5711976;gbkey=CDS;gene=fucA;product=L-fuculose phosphate aldolase;protein_id=YP_001531870.1;transl_table=11
NC_009952.1	RefSeq	gene	508895	509974	.	+	.	ID=gene531;Name=fucA;Dbxref=GeneID:5711977;gbkey=Gene;gene=fucA;locus_tag=Dshi_0524
NC_009952.1	RefSeq	CDS	508895	509974	.	+	0	ID=cds520;Name=YP_001531871.1;Parent=gene531;Note=pfam00248: aldo%2Fketo reductase%3B COG0667%2C Tas%2C Predicted oxidoreductases%3B good swissprot hit to Uncharacterized oxidoreductase yajO from Escherichia coli K12%3B high Ref NP hit to oxido-reductase%2C and dehydratase mocA from Mesorhizobium loti MAFF303099;Dbxref=Genbank:YP_001531871.1,GeneID:5711977;gbkey=CDS;product=aldo%2Fketo reductase;protein_id=YP_001531871.1;transl_table=11
NC_009952.1	RefSeq	gene	510058	510609	.	+	.	ID=gene532;Name=Dshi_0525;Dbxref=GeneID:5711978;gbkey=Gene;locus_tag=Dshi_0525
NC_009952.1	RefSeq	CDS	510058	510609	.	+	0	ID=cds521;Name=YP_001531872.1;Parent=gene532;Note=no significant swissprot%2C unsure GC frame plot%3B COG3911%2C Predicted ATPase%3B cd00009%2C AAA%2C AAA-superfamily of ATPases%3B good Ref ZP hit to ATPase-like protein %5BSagittula stellata E-37%5D.;Dbxref=Genbank:YP_001531872.1,GeneID:5711978;gbkey=CDS;product=ATPase-like protein;protein_id=YP_001531872.1;transl_table=11
NC_009952.1	RefSeq	gene	510637	511236	.	-	.	ID=gene533;Name=dahL;Dbxref=GeneID:5711979;gbkey=Gene;gene=dahL;locus_tag=Dshi_0526
NC_009952.1	RefSeq	CDS	510637	511236	.	-	0	ID=cds522;Name=YP_001531873.1;Parent=gene533;Note=PFAM:PF02734 Dak phosphatase%3B NCBI conserved domains: PRK10005%2C dihydroxyacetone kinase%2C C-terminal domain%3B low swissprot hit to PTS-dependent dihydroxyacetone kinase%2C ADP-binding subunit dhaL from Escherichia coli K12%3B middle Ref ZP hit to Dihydroxyacetone kinase %5BPsychroflexus torquis ATCC 700755%5D%3B unsure GC frame plot%3B ADP-binding subunit dhaL;Dbxref=Genbank:YP_001531873.1,GeneID:5711979;gbkey=CDS;gene=dahL;product=PTS-dependent dihydroxyacetone kinase;protein_id=YP_001531873.1;transl_table=11
NC_009952.1	RefSeq	gene	511233	512234	.	-	.	ID=gene534;Name=dahK;Dbxref=GeneID:5711980;gbkey=Gene;gene=dahK;locus_tag=Dshi_0527
NC_009952.1	RefSeq	CDS	511233	512234	.	-	0	ID=cds523;Name=YP_001531874.1;Parent=gene534;Note=PFAM: Dak kinase%3B NCBI conserved domains: PRK11468%2C dihydroxyacetone kinase subunit DhaK%3B good swissprot hit to PTS-dependent dihydroxyacetone kinase%2C dihydroxyacetone-binding subunit dhaK from Escherichia coli K12%3B high Ref ZP hit to putative dihydroxyacetone kinase %5BAurantimonas sp. SI85-9A1%5D%3B dihydroxyacetone-binding subunit dhaK;Dbxref=Genbank:YP_001531874.1,GeneID:5711980;gbkey=CDS;gene=dahK;product=PTS-dependent dihydroxyacetone kinase;protein_id=YP_001531874.1;transl_table=11
NC_009952.1	RefSeq	gene	512265	513269	.	-	.	ID=gene535;Name=araH2;Dbxref=GeneID:5711981;gbkey=Gene;gene=araH2;locus_tag=Dshi_0528
NC_009952.1	RefSeq	CDS	512265	513269	.	-	0	ID=cds524;Name=YP_001531875.1;Parent=gene535;Note=PFAM: inner-membrane translocator%3B NCBI conserved domains: COG1172%2C AraH%3B middle swissprot hit to Ribose transport system permease protein rbsC from Bacillus subtilis%3B good Ref NP hit to ABC transporter%2C membrane spanning protein %28sugar%29 %5BAgrobacterium tumefaciens str. C58%5D%3B permease components;Dbxref=Genbank:YP_001531875.1,GeneID:5711981;gbkey=CDS;gene=araH2;product=ribose%2Fxylose%2Farabinose%2Fgalactoside ABC-type transport system protein;protein_id=YP_001531875.1;transl_table=11
NC_009952.1	RefSeq	gene	513283	514284	.	-	.	ID=gene536;Name=araH3;Dbxref=GeneID:5711982;gbkey=Gene;gene=araH3;locus_tag=Dshi_0529
NC_009952.1	RefSeq	CDS	513283	514284	.	-	0	ID=cds525;Name=YP_001531876.1;Parent=gene536;Note=PFAM: inner-membrane translocator%3B NCBI conserved domains: COG1172%2C AraH%3B middle swissprot hit to Ribose transport system permease protein rbsC from Bacillus subtilis%3B good Ref ZP hit to putative permease protein%2C ABC-type sugar transporter %5BAurantimonas sp. SI85-9A1%5D%3B permease components;Dbxref=Genbank:YP_001531876.1,GeneID:5711982;gbkey=CDS;gene=araH3;product=ribose%2Fxylose%2Farabinose%2Fgalactoside ABC-type transport system protein;protein_id=YP_001531876.1;transl_table=11
NC_009952.1	RefSeq	gene	514281	515777	.	-	.	ID=gene537;Name=araG2;Dbxref=GeneID:5711983;gbkey=Gene;gene=araG2;locus_tag=Dshi_0530
NC_009952.1	RefSeq	CDS	514281	515777	.	-	0	ID=cds526;Name=YP_001531877.1;Parent=gene537;Note=PFAM: ABC transporter related SMART: AAA ATPase%3B high swissprot hit to Ribose import ATP-binding protein rbsA 3 from Rubrobacter xylanophilus DSM 9941%3B high Ref YP hit to ABC transporter related %5BNocardioides sp. JS614%5D%3B ATP-binding;Dbxref=Genbank:YP_001531877.1,GeneID:5711983;gbkey=CDS;gene=araG2;product=ribose%2Fxylose%2Farabinose%2Fgalactoside ABC-type transport system protein;protein_id=YP_001531877.1;transl_table=11
NC_009952.1	RefSeq	gene	515852	516841	.	-	.	ID=gene538;Name=araF1;Dbxref=GeneID:5711984;gbkey=Gene;gene=araF1;locus_tag=Dshi_0531
NC_009952.1	RefSeq	CDS	515852	516841	.	-	0	ID=cds527;Name=YP_001531878.1;Parent=gene538;Note=NCBI conserved domains: COG4213%2C XylF%2C ABC-type xylose transport system%2C periplasmic component%3B low swissprot hit to Uncharacterized protein yneA precursor from Escherichia coli K12%3B high Ref ZP hit to putative periplasmic substrate-binding protein%2C ABC-type sugar transporter %5BAurantimonas sp. SI85-9A1%5D%3B periplasmic component;Dbxref=Genbank:YP_001531878.1,GeneID:5711984;gbkey=CDS;gene=araF1;product=ribose%2Fxylose%2Farabinose%2Fgalactoside ABC-type transport system protein;protein_id=YP_001531878.1;transl_table=11
NC_009952.1	RefSeq	gene	517065	518039	.	+	.	ID=gene539;Name=deoR2;Dbxref=GeneID:5711985;gbkey=Gene;gene=deoR2;locus_tag=Dshi_0532
NC_009952.1	RefSeq	CDS	517065	518039	.	+	0	ID=cds528;Name=YP_001531879.1;Parent=gene539;Note=PFAM: putative sugar-binding domain protein%3B NCBI conserved domains: pfam04198%2C Sugar-bind and COG2390%2C DeoR%3B middle swissprot hit to Deoxyribonucleoside regulator from Bacillus subtilis%3B good Ref YP hit to transcriptional regulator%2C DeoR family %5BSinorhizobium medicae WSM419%5D%3B DeoR family;Dbxref=Genbank:YP_001531879.1,GeneID:5711985;gbkey=CDS;gene=deoR2;product=transcriptional regulator;protein_id=YP_001531879.1;transl_table=11
NC_009952.1	RefSeq	gene	518039	518887	.	+	.	ID=gene540;Name=deoR2;Dbxref=GeneID:5711986;gbkey=Gene;gene=deoR2;locus_tag=Dshi_0533
NC_009952.1	RefSeq	CDS	518039	518887	.	+	0	ID=cds529;Name=YP_001531880.1;Parent=gene540;Note=PFAM: Xylose isomerase domain protein TIM barrel%3B NCBI conserved domains: cd00019%2C AP2Ec%2C AP endonuclease family 2%3B middle swissprot hit to Uncharacterized protein sll1304 from Synechocystis sp. PCC 6803%3B high Ref YP hit to Xylose isomerase domain protein TIM barrel %5BSinorhizobium medicae WSM419%5D;Dbxref=Genbank:YP_001531880.1,GeneID:5711986;gbkey=CDS;product=xylose isomerase domain-containing protein;protein_id=YP_001531880.1;transl_table=11
NC_009952.1	RefSeq	gene	518910	519929	.	+	.	ID=gene541;Name=pdhA2;Dbxref=GeneID:5711987;gbkey=Gene;gene=pdhA2;locus_tag=Dshi_0534
NC_009952.1	RefSeq	CDS	518910	519929	.	+	0	ID=cds530;Name=YP_001531881.1;Parent=gene541;Note=PFAM: dehydrogenase E1 component%3B good swissprot hit to Pyruvate dehydrogenase E1 component subunit alpha from Zymomonas mobilis%3B high Ref YP hit to dehydrogenase E1 component %5BSinorhizobium medicae WSM419%5D;Dbxref=Genbank:YP_001531881.1,GeneID:5711987;gbkey=CDS;gene=pdhA2;product=pyruvate dehydrogenase E1 component subunit alpha;protein_id=YP_001531881.1;transl_table=11
NC_009952.1	RefSeq	gene	519929	520912	.	+	.	ID=gene542;Name=pdhB1;Dbxref=GeneID:5711988;gbkey=Gene;gene=pdhB1;locus_tag=Dshi_0535
NC_009952.1	RefSeq	CDS	519929	520912	.	+	0	ID=cds531;Name=YP_001531882.1;Parent=gene542;Note=PFAM: Transketolase central region%3B Transketolase domain protein%3B high swissprot hit to Pyruvate dehydrogenase E1 component subunit beta from Rickettsia bellii RML369-C%3B high Ref YP hit to Transketolase central region %5BSinorhizobium medicae WSM419%5D%3B Transketolase central region;Dbxref=Genbank:YP_001531882.1,GeneID:5711988;gbkey=CDS;gene=pdhB1;product=pyruvate dehydrogenase E1 component subunit beta;protein_id=YP_001531882.1;transl_table=11
NC_009952.1	RefSeq	gene	520939	522135	.	+	.	ID=gene543;Name=pdhC2;Dbxref=GeneID:5711989;gbkey=Gene;gene=pdhC2;locus_tag=Dshi_0536
NC_009952.1	RefSeq	CDS	520939	522135	.	+	0	ID=cds532;Name=YP_001531883.1;Parent=gene543;Note=PFAM: alpha%2Fbeta hydrolase fold%3B biotin%2Flipoyl attachment domain-containing protein%3B E3 binding domain protein%3B middle swissprot hit to Acetoin dehydrogenase E2 component from Pseudomonas putida%3B high Ref YP hit to branched-chain alpha-keto acid dehydrogenase subunit E2 from Sinorhizobium medicae WSM419%3B unsure GC frame plot%3B pyruvate dehydrogenase E2 component;Dbxref=Genbank:YP_001531883.1,GeneID:5711989;gbkey=CDS;gene=pdhC2;product=branched-chain alpha-keto acid dehydrogenase subunit E2;protein_id=YP_001531883.1;transl_table=11
NC_009952.1	RefSeq	gene	522165	523658	.	+	.	ID=gene544;Name=Dshi_0537;Dbxref=GeneID:5711990;gbkey=Gene;locus_tag=Dshi_0537
NC_009952.1	RefSeq	CDS	522165	523658	.	+	0	ID=cds533;Name=YP_001531884.1;Parent=gene544;Note=PFAM: carbohydrate kinase FGGY%3B NCBI conserved domains: AraB%2C XylB%3B good swissprot hit to Ribulokinase from Bacillus clausii KSM-K16%3B high Ref YP hit to carbohydrate kinase FGGY %5BSinorhizobium medicae WSM419%5D;Dbxref=Genbank:YP_001531884.1,GeneID:5711990;gbkey=CDS;product=carbohydrate kinase FGGY;protein_id=YP_001531884.1;transl_table=11
NC_009952.1	RefSeq	gene	523844	524515	.	+	.	ID=gene545;Name=Dshi_0538;Dbxref=GeneID:5711991;gbkey=Gene;locus_tag=Dshi_0538
NC_009952.1	RefSeq	CDS	523844	524515	.	+	0	ID=cds534;Name=YP_001531885.1;Parent=gene545;Note=unsure GC frame plot%3B no significant swissprot%3B PFAM: protein of unknown function DUF1045%3B high Ref ZP hit to hypothetical protein SSE37_12456 %5BSagittula stellata E-37%5D;Dbxref=Genbank:YP_001531885.1,GeneID:5711991;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531885.1;transl_table=11
NC_009952.1	RefSeq	gene	524529	525467	.	-	.	ID=gene546;Name=Dshi_0539;Dbxref=GeneID:5711992;gbkey=Gene;locus_tag=Dshi_0539
NC_009952.1	RefSeq	CDS	524529	525467	.	-	0	ID=cds535;Name=YP_001531886.1;Parent=gene546;Note=PFAM: aldo%2Fketo reductase%3B COG0667%2C Tas%2C Predicted oxidoreductases%3B high Ref ZP hit to oxidoreductase%2C aldo%2Fketo reductase family protein %5BSagittula stellata E-37%5D%3B good swissprot hit to Uncharacterized oxidoreductase yajO from Escherichia coli K12%3B aldo%2Fketo reductase family protein;Dbxref=Genbank:YP_001531886.1,GeneID:5711992;gbkey=CDS;product=oxidoreductase;protein_id=YP_001531886.1;transl_table=11
NC_009952.1	RefSeq	gene	525545	526321	.	+	.	ID=gene547;Name=Dshi_0540;Dbxref=GeneID:5711993;gbkey=Gene;locus_tag=Dshi_0540
NC_009952.1	RefSeq	CDS	525545	526321	.	+	0	ID=cds536;Name=YP_001531887.1;Parent=gene547;Note=unsure GC frame plot%3B no significant swissprot%3B PFAM: NnrUfamily protein%3B NCBI conserved domains: pfam07298%2C NnrU%2C NnrU protein%3B good Ref ZP hit to NnrU family protein %5BRoseovarius sp. TM1035%5D;Dbxref=Genbank:YP_001531887.1,GeneID:5711993;gbkey=CDS;product=NnrU family protein;protein_id=YP_001531887.1;transl_table=11
NC_009952.1	RefSeq	gene	526456	527820	.	+	.	ID=gene548;Name=hemN1;Dbxref=GeneID:5711994;gbkey=Gene;gene=hemN1;locus_tag=Dshi_0541
NC_009952.1	RefSeq	CDS	526456	527820	.	+	0	ID=cds537;Name=YP_001531888.1;Parent=gene548;Note=catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III;Dbxref=Genbank:YP_001531888.1,GeneID:5711994;gbkey=CDS;gene=hemN1;product=coproporphyrinogen III oxidase;protein_id=YP_001531888.1;transl_table=11
NC_009952.1	RefSeq	gene	528241	529869	.	-	.	ID=gene549;Name=Dshi_0542;Dbxref=GeneID:5711995;gbkey=Gene;locus_tag=Dshi_0542
NC_009952.1	RefSeq	CDS	528241	529869	.	-	0	ID=cds538;Name=YP_001531889.1;Parent=gene549;Note=NCBI conserved domains: pfam01384%2C PHO4%2C Phosphate transporter family%3B COG0306%2C PitA%2C Phosphate%2Fsulphate permeases%3B high swissprot hit to Putative phosphate permease jhp_1384 from Helicobacter pylori J99%3B high Ref YP hit to phosphate permease %5BAzoarcus sp. EbN1%5D.;Dbxref=Genbank:YP_001531889.1,GeneID:5711995;gbkey=CDS;product=phosphate transporter;protein_id=YP_001531889.1;transl_table=11
NC_009952.1	RefSeq	gene	529946	531796	.	+	.	ID=gene550;Name=Dshi_0543;Dbxref=GeneID:5711996;gbkey=Gene;locus_tag=Dshi_0543
NC_009952.1	RefSeq	CDS	529946	531796	.	+	0	ID=cds539;Name=YP_001531890.1;Parent=gene550;Note=NCBI conserved domains: pfam02690%2C Na_Pi_cotrans%2C Na%2B%2FPi-cotransporter%3B COG1283%2C NptA%2C Na%2B%2Fphosphate symporter%2C bad swissprot hit to Na%28%2B%29%2FPi cotransporter 2B from Bos taurus%3B high Ref ZP hit to Na%2B%2FPi-cotransporter %5BOceanospirillum sp. MED92%5D;Dbxref=Genbank:YP_001531890.1,GeneID:5711996;gbkey=CDS;product=Na%2B%2FPi-cotransporter;protein_id=YP_001531890.1;transl_table=11
NC_009952.1	RefSeq	gene	531843	532091	.	+	.	ID=gene551;Name=Dshi_0544;Dbxref=GeneID:5711997;gbkey=Gene;locus_tag=Dshi_0544
NC_009952.1	RefSeq	CDS	531843	532091	.	+	0	ID=cds540;Name=YP_001531891.1;Parent=gene551;Note=no significant BLAST hits%2C no conserved domains detected;Dbxref=Genbank:YP_001531891.1,GeneID:5711997;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531891.1;transl_table=11
NC_009952.1	RefSeq	gene	532144	532884	.	-	.	ID=gene552;Name=Dshi_0545;Dbxref=GeneID:5711998;gbkey=Gene;locus_tag=Dshi_0545
NC_009952.1	RefSeq	CDS	532144	532884	.	-	0	ID=cds541;Name=YP_001531892.1;Parent=gene552;Note=TIGRFAM: HAD-superfamily hydrolase%2C subfamily IA%2C variant 3%3B HAD-superfamily hydrolase%2C subfamily IA%2C variant 1 PFAM: Haloacid dehalogenase domain protein hydrolase%2C NCBI conserved domains: COG0637%2C Predicted phosphatase%2Fphosphohexomutase%3B low swissprot hit to Phosphatase yieH from Escherichia coli K12%3B good gb hit to HAD-superfamily hydrolase subfamily IA%2C variant 3 %5BHoeflea phototrophica DFL-43%5D%3B subfamily IA%2C variant 3;Dbxref=Genbank:YP_001531892.1,GeneID:5711998;gbkey=CDS;product=HAD-superfamily hydrolase;protein_id=YP_001531892.1;transl_table=11
NC_009952.1	RefSeq	gene	532894	533910	.	-	.	ID=gene553;Name=ugpC2;Dbxref=GeneID:5711999;gbkey=Gene;gene=ugpC2;locus_tag=Dshi_0546
NC_009952.1	RefSeq	CDS	532894	533910	.	-	0	ID=cds542;Name=YP_001531893.1;Parent=gene553;Note=PFAM: ABC transporter related%3B TOBE domain protein%3B Transport-associated OB domain protein SMART: AAA ATPase%3B high swissprot hit to sn-glycerol-3-phosphate import ATP-binding protein ugpC from Silicibacter pomeroyi%3B high gb hit to sorbitol%2Fmannitol ABC transporter%2C ATP-binding protein %5BHoeflea phototrophica DFL-43%5D%3B following three ABC transporter genes %28Dshi_0547 to Dshi_0549%29 com;Dbxref=Genbank:YP_001531893.1,GeneID:5711999;gbkey=CDS;gene=ugpC2;product=sugar%2Fsn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;protein_id=YP_001531893.1;transl_table=11
NC_009952.1	RefSeq	gene	534071	535414	.	+	.	ID=gene554;Name=ugpB4;Dbxref=GeneID:5712000;gbkey=Gene;gene=ugpB4;locus_tag=Dshi_0547
NC_009952.1	RefSeq	CDS	534071	535414	.	+	0	ID=cds543;Name=YP_001531894.1;Parent=gene554;Note=PFAM: extracellular solute-binding protein family%2C NCBI conserved domains: COG1653%2C UgpB%2C ABC-type sugar transport system%2C periplasmic component%3B low swissprot hit to Putative binding protein BruAb2_0484 precursor from Brucella abortus%3B high gb hit to sugar ABC transporter%2C periplasmic binding protein%2C putative from Hoeflea phototrophica DFL-43%3B periplasmic component ugpB;Dbxref=Genbank:YP_001531894.1,GeneID:5712000;gbkey=CDS;gene=ugpB4;product=sugar%2Fsn-glycerol 3-phosphate ABC transporter protein;protein_id=YP_001531894.1;transl_table=11
NC_009952.1	RefSeq	gene	535489	536355	.	+	.	ID=gene555;Name=ugpA1;Dbxref=GeneID:5712001;gbkey=Gene;gene=ugpA1;locus_tag=Dshi_0548
NC_009952.1	RefSeq	CDS	535489	536355	.	+	0	ID=cds544;Name=YP_001531895.1;Parent=gene555;Note=PFAM: binding-protein-dependent transport systems inner membrane component%2C NCBI conserved domains: COG1175%2C UgpA%2C ABC-type sugar transport systems%2C permease components%3B middle swissprot hit to Probable ABC transporter permease protein y4oQ from Rhizobium sp. NGR234%3B high gb hit to putative sugar ABC transporter%2C permease protein %5BHoeflea phototrophica DFL-43%5D;Dbxref=Genbank:YP_001531895.1,GeneID:5712001;gbkey=CDS;gene=ugpA1;product=sugar%2Fsn-glycerol-3-phosphate ABC transporter permease UgpA;protein_id=YP_001531895.1;transl_table=11
NC_009952.1	RefSeq	gene	536359	537177	.	+	.	ID=gene556;Name=ugpE4;Dbxref=GeneID:5712002;gbkey=Gene;gene=ugpE4;locus_tag=Dshi_0549
NC_009952.1	RefSeq	CDS	536359	537177	.	+	0	ID=cds545;Name=YP_001531896.1;Parent=gene556;Note=PFAM: binding-protein-dependent transport systems inner membrane component%3B NCBI conserved domains: COG0395%2C UgpE%2C ABC-type sugar transport system%2C permease component and COG3833%2C MalG%2C ABC-type maltose transport systems%2C permease component%3B middle swissprot hit to Probable ABC transporter permease protein y4oR from Rhizobium sp. NGR234%3B high gb hit to sugar ABC transporter permease protein %5BHoef;Dbxref=Genbank:YP_001531896.1,GeneID:5712002;gbkey=CDS;gene=ugpE4;product=sugar%2Fsn-glycerol-3-phosphate ABC transporter permease UgpE;protein_id=YP_001531896.1;transl_table=11
NC_009952.1	RefSeq	gene	537246	538217	.	+	.	ID=gene557;Name=deoR1;Dbxref=GeneID:5712003;gbkey=Gene;gene=deoR1;locus_tag=Dshi_0550
NC_009952.1	RefSeq	CDS	537246	538217	.	+	0	ID=cds546;Name=YP_001531897.1;Parent=gene557;Note=PFAM: putative sugar-binding domain protein%3B low swissprot hit to Deoxyribonucleoside regulator DeoR from Bacillus subtilis%3B high gb hit to putative transcriptional regulator protein%2C DeoR family %5BHoefleaphototrophica DFL-43%5D%3B DeoR family;Dbxref=Genbank:YP_001531897.1,GeneID:5712003;gbkey=CDS;gene=deoR1;product=transcriptional regulator;protein_id=YP_001531897.1;transl_table=11
NC_009952.1	RefSeq	gene	538237	539280	.	+	.	ID=gene558;Name=xylD;Dbxref=GeneID:5712004;gbkey=Gene;gene=xylD;locus_tag=Dshi_0551
NC_009952.1	RefSeq	CDS	538237	539280	.	+	0	ID=cds547;Name=YP_001531898.1;Parent=gene558;Note=PFAM: Alcohol dehydrogenase zinc-binding domain protein%3B Alcohol dehydrogenase GroES domain protein%3B high swissprot hit to Putative D-xylulose reductase from Sinorhizobium meliloti%3B high gb hit to D-xylulose reductase%2C putative %5BHoeflea phototrophica DFL-43%5D%3B Xylitol dehydrogenase;Dbxref=Genbank:YP_001531898.1,GeneID:5712004;gbkey=CDS;gene=xylD;product=D-xylulose reductase;protein_id=YP_001531898.1;transl_table=11
NC_009952.1	RefSeq	gene	539277	539843	.	+	.	ID=gene559;Name=xylD;Dbxref=GeneID:5712005;gbkey=Gene;gene=xylD;locus_tag=Dshi_0552
NC_009952.1	RefSeq	CDS	539277	539843	.	+	0	ID=cds548;Name=YP_001531899.1;Parent=gene559;Note=PFAM: sugar isomerase %28SIS%29%3B middle swissprot to 3-hexulose-6-phosphate isomerase from Bacillus subtilis%3B good gb hit to 6-phospho-3-hexuloisomerase %5BHoeflea phototrophica DFL-43%5D.;Dbxref=Genbank:YP_001531899.1,GeneID:5712005;gbkey=CDS;product=sugar isomerase;protein_id=YP_001531899.1;transl_table=11
NC_009952.1	RefSeq	gene	539847	540614	.	+	.	ID=gene560;Name=Dshi_0553;Dbxref=GeneID:5712006;gbkey=Gene;locus_tag=Dshi_0553
NC_009952.1	RefSeq	CDS	539847	540614	.	+	0	ID=cds549;Name=YP_001531900.1;Parent=gene560;Note=PFAM: short-chain dehydrogenase%2Freductase SDR%3B KR domain protein%3B NCBI conserved domains: PRK12825%2C fabG%2C 3-ketoacyl-%28acyl-carrier-protein%29 reductase%3B middle swissprot hit to3-oxoacyl-%5Bacyl-carrier-protein%5D reductase from Bacillus subtilis%3B good ref ZP hit to Short-chain dehydrogenase%2Freductase SDR %5BSynechococcus sp. WH 5701%5D;Dbxref=Genbank:YP_001531900.1,GeneID:5712006;gbkey=CDS;product=short-chain dehydrogenase%2Freductase SDR;protein_id=YP_001531900.1;transl_table=11
NC_009952.1	RefSeq	gene	541133	541858	.	+	.	ID=gene561;Name=rbtD;Dbxref=GeneID:5712007;gbkey=Gene;gene=rbtD;locus_tag=Dshi_0554
NC_009952.1	RefSeq	CDS	541133	541858	.	+	0	ID=cds550;Name=YP_001531901.1;Parent=gene561;Note=PFAM: short-chain dehydrogenase%2Freductase SDR%3B KR domain protein%3B high swissprot hit to Ribitol 2-dehydrogenase %28RDH%29 from Klebsiella aerogenes%3B high Ref YP hit to probable ribitol 2-dehydrogenase protein %5BRhizobium etli CFN 42%5D.;Dbxref=Genbank:YP_001531901.1,GeneID:5712007;gbkey=CDS;gene=rbtD;product=ribitol 2-dehydrogenase;protein_id=YP_001531901.1;transl_table=11
NC_009952.1	RefSeq	gene	541855	543489	.	+	.	ID=gene562;Name=araB;Dbxref=GeneID:5712008;gbkey=Gene;gene=araB;locus_tag=Dshi_0555
NC_009952.1	RefSeq	CDS	541855	543489	.	+	0	ID=cds551;Name=YP_001531902.1;Parent=gene562;Note=TIGRFAM: FGGY-family pentulose kinase PFAM: carbohydrate kinase FGGY%3B good swissprot hit to Uncharacterized sugar kinase YDR109C from Saccharomyces cerevisiae%3B high gb hit to ribitol kinase %5BEscherichia coli%5D%3B unsure Gc frame plot;Dbxref=Genbank:YP_001531902.1,GeneID:5712008;gbkey=CDS;gene=araB;product=ribulokinase;protein_id=YP_001531902.1;transl_table=11
NC_009952.1	RefSeq	gene	544002	544445	.	+	.	ID=gene563;Name=Dshi_0556;Dbxref=GeneID:5712009;gbkey=Gene;locus_tag=Dshi_0556
NC_009952.1	RefSeq	CDS	544002	544445	.	+	0	ID=cds552;Name=YP_001531903.1;Parent=gene563;Note=unsure GC frame plot%2C no significant swissprot%2C bad gb hit to nucleoside diphosphate kinase regulator from Oceanibulbus indolifex HEL-45%3B NCBI conserved domains: PRK05753%2C nucleoside diphosphate kinase regulator;Dbxref=Genbank:YP_001531903.1,GeneID:5712009;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531903.1;transl_table=11
NC_009952.1	RefSeq	gene	544496	544927	.	+	.	ID=gene564;Name=greA2;Dbxref=GeneID:5712010;gbkey=Gene;gene=greA2;locus_tag=Dshi_0557
NC_009952.1	RefSeq	CDS	544496	544927	.	+	0	ID=cds553;Name=YP_001531904.1;Parent=gene564;Note=PFAM: transcription elongation factor GreA%2FGreB domain protein%2C NCBI conserved domains: COG0782%2C GreA%2C Transcription elongation factor%2C bad swissprot hit to Transcription elongation factor greA from Sinorhizobium meliloti%3B middle gb hit to GreA%2FGreB family elongation factor %5BOceanibulbus indolifex HEL-45%5D.;Dbxref=Genbank:YP_001531904.1,GeneID:5712010;gbkey=CDS;gene=greA2;product=GreA%2FGreB family elongation factor;protein_id=YP_001531904.1;transl_table=11
NC_009952.1	RefSeq	gene	545054	546313	.	+	.	ID=gene565;Name=dadA;Dbxref=GeneID:5712011;gbkey=Gene;gene=dadA;locus_tag=Dshi_0558
NC_009952.1	RefSeq	CDS	545054	546313	.	+	0	ID=cds554;Name=YP_001531905.1;Parent=gene565;Note=PFAM: FAD dependent oxidoreductase%3B NCBI conserved domains: PRK00711%2C D-amino acid dehydrogenase small subunit%3B high swissprot hit to D-amino acid dehydrogenase small subunit from Bradyrhizobium japonicum%3B high gb hit to D-amino-acid dehydrogenase%2C small subunit protein %5BOceanibulbus indolifex HEL-45%5D.;Dbxref=Genbank:YP_001531905.1,GeneID:5712011;gbkey=CDS;gene=dadA;product=D-amino-acid dehydrogenase;protein_id=YP_001531905.1;transl_table=11
NC_009952.1	RefSeq	gene	546760	547167	.	+	.	ID=gene566;Name=Dshi_0559;Dbxref=GeneID:5712012;gbkey=Gene;locus_tag=Dshi_0559
NC_009952.1	RefSeq	CDS	546760	547167	.	+	0	ID=cds555;Name=YP_001531906.1;Parent=gene566;Note=unsure GC frame plot%2C no significant swissprot%2C PFAM: protein of unknown function DUF1636%3B NCBI conserved domains: COG5469%2C Predicted metal-binding protein%3B middle Ref ZP hit to hypothetical protein RCCS2_05834 %5BRoseobacter sp. CCS2%5D.;Dbxref=Genbank:YP_001531906.1,GeneID:5712012;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531906.1;transl_table=11
NC_009952.1	RefSeq	gene	547164	547937	.	+	.	ID=gene567;Name=fhuC;Dbxref=GeneID:5712013;gbkey=Gene;gene=fhuC;locus_tag=Dshi_0560
NC_009952.1	RefSeq	CDS	547164	547937	.	+	0	ID=cds556;Name=YP_001531907.1;Parent=gene567;Note=PFAM: ABC transporter related SMART: AAA ATPase%3B good swissprot hit to Ferrichrome transport ATP-binding protein fhuC from Escherichia coli K12%3B high Ref ZP hit to iron ABC transporter%2C ATP-binding protein%2C putative %5BRoseobactersp. CCS2%5D%2C unsure GC frame plot%3B ATPase components%3B alternative gene name: fecE%2FfepC%2FbtuD;Dbxref=Genbank:YP_001531907.1,GeneID:5712013;gbkey=CDS;gene=fhuC;product=cobalamin%2FFe3%2B-siderophores ABC transporter protein;protein_id=YP_001531907.1;transl_table=11
NC_009952.1	RefSeq	gene	547953	548888	.	+	.	ID=gene568;Name=fhuD;Dbxref=GeneID:5712014;gbkey=Gene;gene=fhuD;locus_tag=Dshi_0561
NC_009952.1	RefSeq	CDS	547953	548888	.	+	0	ID=cds557;Name=YP_001531908.1;Parent=gene568;Note=PFAM: periplasmic binding protein%3B low swissprot hit to Vitamin B12-binding protein precursor from Escherichia coli O6%3B high Ref YP hit to putative iron ABC transporter%2C periplasmic binding protein from Roseobacter denitrificans OCh 114%3B NCBI conserved domains: fhuD%2C btuF%3B periplasmic binding protein%3B alternative gene name: fecB%2FfepB%2FbtuF;Dbxref=Genbank:YP_001531908.1,GeneID:5712014;gbkey=CDS;gene=fhuD;product=cobalamin%2FFe3%2B-siderophores ABC transporter protein;protein_id=YP_001531908.1;transl_table=11
NC_009952.1	RefSeq	gene	548885	549931	.	+	.	ID=gene569;Name=fhuB;Dbxref=GeneID:5712015;gbkey=Gene;gene=fhuB;locus_tag=Dshi_0562
NC_009952.1	RefSeq	CDS	548885	549931	.	+	0	ID=cds558;Name=YP_001531909.1;Parent=gene569;Note=PFAM: transport system permease protein%3B NCBI conserved domains: fecCD%2C fepDG%2C btuC%3B good swissprot hit to Ferrichrome transport system permease protein fhuB from Bacillus subtilis%3B high gb hit to putative hemin ABC transport protein%2C permease component from Roseobacter litoralis Och 149%3B permease protein%3B alternative gene name: fecCD%2FfepDG%2FbtuC;Dbxref=Genbank:YP_001531909.1,GeneID:5712015;gbkey=CDS;gene=fhuB;product=cobalamin%2FFe3%2B-siderophores ABC transporter protein;protein_id=YP_001531909.1;transl_table=11
NC_009952.1	RefSeq	gene	550566	551828	.	+	.	ID=gene570;Name=irpA;Dbxref=GeneID:5712016;gbkey=Gene;gene=irpA;locus_tag=Dshi_0563
NC_009952.1	RefSeq	CDS	550566	551828	.	+	0	ID=cds559;Name=YP_001531910.1;Parent=gene570;Note=unsure GC frame plot%3B NCBI conserved domains: COG3487%2C IrpA%2C Uncharacterized iron-regulated protein%3B low swissprot hit to Iron-regulated protein A precursor from Synechococcus elongatus PCC 7942%3B high Ref ZP hit to lipoprotein%2C putative %5BRhodobacterales bacterium HTCC2150%5D;Dbxref=Genbank:YP_001531910.1,GeneID:5712016;gbkey=CDS;gene=irpA;product=iron-regulated protein;protein_id=YP_001531910.1;transl_table=11
NC_009952.1	RefSeq	gene	551932	553464	.	+	.	ID=gene571;Name=Dshi_0564;Dbxref=GeneID:5712017;gbkey=Gene;locus_tag=Dshi_0564
NC_009952.1	RefSeq	CDS	551932	553464	.	+	0	ID=cds560;Name=YP_001531911.1;Parent=gene571;Note=PFAM: protein of unknown function DUF1111%3B NCBI conserved domains: COG3488%2C Predicted thiol oxidoreductase%3B no significant swissprot%3B high Ref ZP hit to probable thiol oxidoreductase with 2 cytochrome c heme-binding sites %5BSulfitobacter sp. EE-36%5D;Dbxref=Genbank:YP_001531911.1,GeneID:5712017;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531911.1;transl_table=11
NC_009952.1	RefSeq	gene	553461	554477	.	+	.	ID=gene572;Name=Dshi_0565;Dbxref=GeneID:5712018;gbkey=Gene;locus_tag=Dshi_0565
NC_009952.1	RefSeq	CDS	553461	554477	.	+	0	ID=cds561;Name=YP_001531912.1;Parent=gene572;Note=low swissprot hit to Iron-regulated protein A precursor from Synechococcus elongatus PCC 7942%3B high Ref ZP hit to hypothetical protein RB2150_00045 %5BRhodobacterales bacterium HTCC2150%5D%3B NCBI conserved domains: COG3489%2C Predicted periplasmic lipoprotein;Dbxref=Genbank:YP_001531912.1,GeneID:5712018;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531912.1;transl_table=11
NC_009952.1	RefSeq	gene	554479	555561	.	+	.	ID=gene573;Name=Dshi_0566;Dbxref=GeneID:5712019;gbkey=Gene;locus_tag=Dshi_0566
NC_009952.1	RefSeq	CDS	554479	555561	.	+	0	ID=cds562;Name=YP_001531913.1;Parent=gene573;Note=NCBI conserved domains: pfam07433%2C DUF1513%2C COG3490%2C Uncharacterized protein conserved in bacteria%2C no significant swissprot%3B high Ref ZP hit to hypothetical protein RB2150_00040 %5BRhodobacterales bacterium HTCC2150%5D%3B unsure GC frame plot;Dbxref=Genbank:YP_001531913.1,GeneID:5712019;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531913.1;transl_table=11
NC_009952.1	RefSeq	gene	555614	556162	.	-	.	ID=gene574;Name=Dshi_0567;Dbxref=GeneID:5712020;gbkey=Gene;locus_tag=Dshi_0567
NC_009952.1	RefSeq	CDS	555614	556162	.	-	0	ID=cds563;Name=YP_001531914.1;Parent=gene574;Note=unsure GC frame plot%3B TIGRFAM: TonB family protein%3B low swissprot hit to Protein tonB from Pseudomonas putida%3B low Ref ZP hit toPutative TonB protein %5BRoseobacter sp. SK209-2-6%5D;Dbxref=Genbank:YP_001531914.1,GeneID:5712020;gbkey=CDS;product=TonB family protein;protein_id=YP_001531914.1;transl_table=11
NC_009952.1	RefSeq	gene	556657	557049	.	-	.	ID=gene575;Name=exbD;Dbxref=GeneID:5712021;gbkey=Gene;gene=exbD;locus_tag=Dshi_0568
NC_009952.1	RefSeq	CDS	556657	557049	.	-	0	ID=cds564;Name=YP_001531915.1;Parent=gene575;Note=PFAM: Biopolymer transport protein ExbD%2FTolR%3B low swissprot hit to Biopolymer transport protein exbD1 from Vibrio cholerae%3B low gb hit to Biopolymer transport protein ExbD%2FTolR %5Balpha proteobacterium BAL199%5D;Dbxref=Genbank:YP_001531915.1,GeneID:5712021;gbkey=CDS;gene=exbD;product=biopolymer transport protein ExbD%2FTolR;protein_id=YP_001531915.1;transl_table=11
NC_009952.1	RefSeq	gene	557437	558129	.	-	.	ID=gene576;Name=exbB;Dbxref=GeneID:5712022;gbkey=Gene;gene=exbB;locus_tag=Dshi_0569
NC_009952.1	RefSeq	CDS	557437	558129	.	-	0	ID=cds565;Name=YP_001531916.1;Parent=gene576;Note=PFAM: MotA%2FTolQ%2FExbB proton channel%3B low swissprot hit to Putative biopolymer transport protein exbB homolog from Methanothermobacter thermautotrophicus str. Delta H%3B good Ref ZP hit to MotA%2FTolQ%2FExbB proton channel %5BRoseobacter sp. SK209-2-6%5D%3B NCBI conserved domains: MotA%2F ExbB;Dbxref=Genbank:YP_001531916.1,GeneID:5712022;gbkey=CDS;gene=exbB;product=MotA%2FTolQ%2FExbB proton channel;protein_id=YP_001531916.1;transl_table=11
NC_009952.1	RefSeq	gene	558999	561026	.	+	.	ID=gene577;Name=fhuA;Dbxref=GeneID:5712023;gbkey=Gene;gene=fhuA;locus_tag=Dshi_0570
NC_009952.1	RefSeq	CDS	558999	561026	.	+	0	ID=cds566;Name=YP_001531917.1;Parent=gene577;Note=PFAM: TonB-dependent receptor%3B TonB-dependent receptor plug%3B low swissprot hit to Vitamin B12 transporter btuB precursor from Photobacterium profundum%3B high Ref NP hit to putative outer membrane receptor for iron compound or colicin %5BEscherichia coli O157:H7 EDL933%5D%3B TonB-dependent outermembrane recepter protein%3B alternative gene name: fecA%2FfepA%2FbtuB;Dbxref=Genbank:YP_001531917.1,GeneID:5712023;gbkey=CDS;gene=fhuA;product=cobalamin%2FFe3%2B-siderophores ABC transporter protein;protein_id=YP_001531917.1;transl_table=11
NC_009952.1	RefSeq	gene	561072	561854	.	-	.	ID=gene578;Name=hmuV;Dbxref=GeneID:5712024;gbkey=Gene;gene=hmuV;locus_tag=Dshi_0571
NC_009952.1	RefSeq	CDS	561072	561854	.	-	0	ID=cds567;Name=YP_001531918.1;Parent=gene578;Note=with HmuTU is involved in the transport of hemin;Dbxref=Genbank:YP_001531918.1,GeneID:5712024;gbkey=CDS;gene=hmuV;product=hemin importer ATP-binding subunit;protein_id=YP_001531918.1;transl_table=11
NC_009952.1	RefSeq	gene	561851	562933	.	-	.	ID=gene579;Name=hmuU;Dbxref=GeneID:5712025;gbkey=Gene;gene=hmuU;locus_tag=Dshi_0572
NC_009952.1	RefSeq	CDS	561851	562933	.	-	0	ID=cds568;Name=YP_001531919.1;Parent=gene579;Note=PFAM: transport system permease protein%3B good swissprot hit to Hemin transport system permease protein hmuU from Yersinia pestis%3B high embl hit to HmuU protein %5BRhizobium leguminosarum%5D.;Dbxref=Genbank:YP_001531919.1,GeneID:5712025;gbkey=CDS;gene=hmuU;product=hemin transport system permease hmuU;protein_id=YP_001531919.1;transl_table=11
NC_009952.1	RefSeq	gene	562923	563759	.	-	.	ID=gene580;Name=hmuT;Dbxref=GeneID:5712026;gbkey=Gene;gene=hmuT;locus_tag=Dshi_0573
NC_009952.1	RefSeq	CDS	562923	563759	.	-	0	ID=cds569;Name=YP_001531920.1;Parent=gene580;Note=PFAM: periplasmic binding protein%3B good swissprot hit to Hemin-binding periplasmic protein hmuT precursor from Yersinia pestis%3B high Ref YP hit to hemin ABC transporter%2C periplasmic hemin-binding protein %5BRoseobacter denitrificans OCh 114%5D;Dbxref=Genbank:YP_001531920.1,GeneID:5712026;gbkey=CDS;gene=hmuT;product=hemin-binding periplasmic protein HmuT;protein_id=YP_001531920.1;transl_table=11
NC_009952.1	RefSeq	gene	563756	564787	.	-	.	ID=gene581;Name=hmuS;Dbxref=GeneID:5712027;gbkey=Gene;gene=hmuS;locus_tag=Dshi_0574
NC_009952.1	RefSeq	CDS	563756	564787	.	-	0	ID=cds570;Name=YP_001531921.1;Parent=gene581;Note=PFAM: Haemin-degrading family protein%3B NCBI conserved domains: hemS%3B good swissprot hit to Hemin transport protein hmuS fromYersinia pestis%3B high Ref ZP hit to Haemin-degrading %5BRoseovarius sp. TM1035%5D%3B hemin-degrading;Dbxref=Genbank:YP_001531921.1,GeneID:5712027;gbkey=CDS;gene=hmuS;product=hemin transport protein hmuS;protein_id=YP_001531921.1;transl_table=11
NC_009952.1	RefSeq	gene	564854	565354	.	-	.	ID=gene582;Name=Dshi_0575;Dbxref=GeneID:5712028;gbkey=Gene;locus_tag=Dshi_0575
NC_009952.1	RefSeq	CDS	564854	565354	.	-	0	ID=cds571;Name=YP_001531922.1;Parent=gene582;Note=no significant swissprot%2C no conserved domains%3B low Ref ZP hit to hypothetical protein SSE37_21645 %5BSagittula stellata E-37%5D.;Dbxref=Genbank:YP_001531922.1,GeneID:5712028;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531922.1;transl_table=11
NC_009952.1	RefSeq	gene	565766	566635	.	-	.	ID=gene583;Name=Dshi_0576;Dbxref=GeneID:5712029;gbkey=Gene;locus_tag=Dshi_0576
NC_009952.1	RefSeq	CDS	565766	566635	.	-	0	ID=cds572;Name=YP_001531923.1;Parent=gene583;Note=PFAM: regulatory protein LysR%3B LysR substrate-binding%3B low swissprot hit to Uncharacterized HTH-type transcriptional regulator ydcI from Escherichia coli K12%3B middle Ref ZP hit to transcriptional regulator%2C LysR family protein %5BRoseobacter sp. AzwK-3b%5D%3B LysR family;Dbxref=Genbank:YP_001531923.1,GeneID:5712029;gbkey=CDS;product=transcriptional regulator;protein_id=YP_001531923.1;transl_table=11
NC_009952.1	RefSeq	gene	566726	568177	.	+	.	ID=gene584;Name=aldH2;Dbxref=GeneID:5712030;gbkey=Gene;gene=aldH2;locus_tag=Dshi_0577
NC_009952.1	RefSeq	CDS	566726	568177	.	+	0	ID=cds573;Name=YP_001531924.1;Parent=gene584;Note=PFAM: aldehyde dehydrogenase%2C NCBI conserved domains: pfam00171%2C Aldedh%2C Aldehyde dehydrogenase family%3B high swissprot hit to Aldehyde dehydrogenase%2C thermostable from Geobacillus stearothermophilus%3B high Ref ZP hit to aldehyde dehydrogenase family protein %5BRoseovarius sp. 217%5D.;Dbxref=Genbank:YP_001531924.1,GeneID:5712030;gbkey=CDS;gene=aldH2;product=aldehyde dehydrogenase;protein_id=YP_001531924.1;transl_table=11
NC_009952.1	RefSeq	gene	568174	569184	.	+	.	ID=gene585;Name=rDP;Dbxref=GeneID:5712031;gbkey=Gene;gene=rDP;locus_tag=Dshi_0578
NC_009952.1	RefSeq	CDS	568174	569184	.	+	0	ID=cds574;Name=YP_001531925.1;Parent=gene585;Note=PFAM: peptidase M19 renal dipeptidase%3B NCBI conserved domains: rDP-like%3B low swissprot hit to Dipeptidase 1 precursor from Oryctolagus cuniculus%3B high Ref ZP hit to peptidase M19%2C renal dipeptidase %5BRoseovarius sp. TM1035%5D;Dbxref=Genbank:YP_001531925.1,GeneID:5712031;gbkey=CDS;gene=rDP;product=peptidase M19;protein_id=YP_001531925.1;transl_table=11
NC_009952.1	RefSeq	gene	569219	570778	.	+	.	ID=gene586;Name=betT;Dbxref=GeneID:5712032;gbkey=Gene;gene=betT;locus_tag=Dshi_0579
NC_009952.1	RefSeq	CDS	569219	570778	.	+	0	ID=cds575;Name=YP_001531926.1;Parent=gene586;Note=PFAM: BCCT transporter%3B NCBI conserved domains: COG1292%2C BetT%2C Choline-glycine betaine transporter and pfam02028%2C BCCT%3B good swissprot hit to Glycine betaine transporter opuD from Bacillus subtilis%3B high gb hit to putative glycine betaine transporter %5BPhaeobacter gallaeciensis 2.10%5D;Dbxref=Genbank:YP_001531926.1,GeneID:5712032;gbkey=CDS;gene=betT;product=choline-glycine betaine transporter;protein_id=YP_001531926.1;transl_table=11
NC_009952.1	RefSeq	gene	570846	572522	.	+	.	ID=gene587;Name=Dshi_0580;Dbxref=GeneID:5712033;gbkey=Gene;locus_tag=Dshi_0580
NC_009952.1	RefSeq	CDS	570846	572522	.	+	0	ID=cds576;Name=YP_001531927.1;Parent=gene587;Note=unsure GC frame plot%2C no significant swissprot%2C no conserved domains%3B high Ref ZP hit to hypothetical protein ROS217_07275 %5BRoseovarius sp. 217%5D;Dbxref=Genbank:YP_001531927.1,GeneID:5712033;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531927.1;transl_table=11
NC_009952.1	RefSeq	gene	572519	573250	.	+	.	ID=gene588;Name=Dshi_0581;Dbxref=GeneID:5712034;gbkey=Gene;locus_tag=Dshi_0581
NC_009952.1	RefSeq	CDS	572519	573250	.	+	0	ID=cds577;Name=YP_001531928.1;Parent=gene588;Note=unsure GC frame plot%2C no significant swissprot%2C no conserved domains%3B middle Ref YP hit to hypothetical protein PFL_0797 %5BPseudomonas fluorescens Pf-5%5D.;Dbxref=Genbank:YP_001531928.1,GeneID:5712034;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531928.1;transl_table=11
NC_009952.1	RefSeq	gene	573264	573629	.	+	.	ID=gene589;Name=Dshi_0582;Dbxref=GeneID:5712035;gbkey=Gene;locus_tag=Dshi_0582
NC_009952.1	RefSeq	CDS	573264	573629	.	+	0	ID=cds578;Name=YP_001531929.1;Parent=gene589;Note=unsure GC frame plot%2C PFAM: Endoribonuclease L-PSP%3B NCBI conserved domains: cd02198%2C YjgH%3B low swissprot hit to UPF0076 protein HI1627 from Haemophilus influenzae%3B low Ref YP hit to yjgF family protein %5BAzorhizobium caulinodans ORS 571%5D.;Dbxref=Genbank:YP_001531929.1,GeneID:5712035;gbkey=CDS;product=putative Endoribonuclease L-PSP;protein_id=YP_001531929.1;transl_table=11
NC_009952.1	RefSeq	gene	573863	573937	.	-	.	ID=gene590;Name=Dshi_6012;Dbxref=GeneID:5712036;gbkey=Gene;locus_tag=Dshi_6012
NC_009952.1	RefSeq	tRNA	573863	573937	.	-	.	ID=rna11;Parent=gene590;Dbxref=GeneID:5712036;codons=26;gbkey=tRNA;product=tRNA-Gln
NC_009952.1	RefSeq	exon	573863	573937	.	-	.	ID=id13;Parent=rna11;Dbxref=GeneID:5712036;codons=26;gbkey=tRNA;product=tRNA-Gln
NC_009952.1	RefSeq	gene	574071	574904	.	-	.	ID=gene591;Name=kdsA;Dbxref=GeneID:5712037;gbkey=Gene;gene=kdsA;locus_tag=Dshi_0583
NC_009952.1	RefSeq	CDS	574071	574904	.	-	0	ID=cds579;Name=YP_001531930.1;Parent=gene591;Note=catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis;Dbxref=Genbank:YP_001531930.1,GeneID:5712037;gbkey=CDS;gene=kdsA;product=2-dehydro-3-deoxyphosphooctonate aldolase;protein_id=YP_001531930.1;transl_table=11
NC_009952.1	RefSeq	gene	574921	576630	.	-	.	ID=gene592;Name=kpsE;Dbxref=GeneID:5712038;gbkey=Gene;gene=kpsE;locus_tag=Dshi_0584
NC_009952.1	RefSeq	CDS	574921	576630	.	-	0	ID=cds580;Name=YP_001531931.1;Parent=gene592;Note=PFAM: lipopolysaccharide biosynthesis protein%3B NCBI conserved domains: COG3524%2C KpsE%2C Capsule polysaccharide export protein%3B middle swissprot hit to Capsule polysaccharide export inner-membrane protein ctrB from Neisseria meningitidis serogroup A%3B high Ref ZP hit to Capsule polysaccharide export protein-like %5BRhodobacterales bacterium HTCC2150%5D%3B permease protein%3B alternative gene name: ctrB;Dbxref=Genbank:YP_001531931.1,GeneID:5712038;gbkey=CDS;gene=kpsE;product=capsule polysaccharide export;protein_id=YP_001531931.1;transl_table=11
NC_009952.1	RefSeq	gene	576608	577267	.	-	.	ID=gene593;Name=kpsT;Dbxref=GeneID:5712039;gbkey=Gene;gene=kpsT;locus_tag=Dshi_0585
NC_009952.1	RefSeq	CDS	576608	577267	.	-	0	ID=cds581;Name=YP_001531932.1;Parent=gene593;Note=PFAM: ABC transporter related%3B NCBI conserved domains: kpsT%3B good swissprot hit to Capsule polysaccharide export ATP-binding protein ctrD from Neisseria meningitidis serogroup B%3B high Ref ZP hit to capsular polysaccharide export ATP-binding protein %5BOceanicola granulosus HTCC2516%5D%3B ATP-binding protein%3B alternative gene name: ctrD;Dbxref=Genbank:YP_001531932.1,GeneID:5712039;gbkey=CDS;gene=kpsT;product=capsule polysaccharide export;protein_id=YP_001531932.1;transl_table=11
NC_009952.1	RefSeq	gene	577452	578498	.	-	.	ID=gene594;Name=kpsM;Dbxref=GeneID:5712040;gbkey=Gene;gene=kpsM;locus_tag=Dshi_0586
NC_009952.1	RefSeq	CDS	577452	578498	.	-	0	ID=cds582;Name=YP_001531933.1;Parent=gene594;Note=PFAM: permease%3B NCBI conserved domains: COG0701%2C Predicted permeases%3B no significant swissprot%3B high Ref ZP hit to permease%2C putative %5BRoseovarius nubinhibens ISM%5D%3B ambiguous hits%2C but in connection with the gene context %28Dshi_0584 kpsE%2C Dshi_0858 kpsT%29 the permease should be kpsM%3B permease protein%3B alternative gene name: ctrC;Dbxref=Genbank:YP_001531933.1,GeneID:5712040;gbkey=CDS;gene=kpsM;product=capsule polysaccharide transport;protein_id=YP_001531933.1;transl_table=11
NC_009952.1	RefSeq	gene	578470	578814	.	-	.	ID=gene595;Name=kpsM;Dbxref=GeneID:5712041;gbkey=Gene;gene=kpsM;locus_tag=Dshi_0587
NC_009952.1	RefSeq	CDS	578470	578814	.	-	0	ID=cds583;Name=YP_001531934.1;Parent=gene595;Note=SMART: regulatory protein ArsR%3B unsure GC frame plot%3B no significant swissprot%3B NCBI conserved domains: ArsR%3B middle Ref ZP hit to transcriptional regulator%2C ArsR family protein %5BRoseovarius sp. HTCC2601%5D.%3B ArsR family;Dbxref=Genbank:YP_001531934.1,GeneID:5712041;gbkey=CDS;product=putative transcriptional regulator;protein_id=YP_001531934.1;transl_table=11
NC_009952.1	RefSeq	gene	578892	579500	.	+	.	ID=gene596;Name=Dshi_0588;Dbxref=GeneID:5712042;gbkey=Gene;locus_tag=Dshi_0588
NC_009952.1	RefSeq	CDS	578892	579500	.	+	0	ID=cds584;Name=YP_001531935.1;Parent=gene596;Note=unsure GC frame plot%3B InterPro Scan results: SSF52141 UDNA_glycsylseSF%3B NCBI conserved domains: COG1573%2C Uracil-DNA glycosylase and pfam03167%2C UDG%2C Uracil DNA glycosylase superfamily%3B middle swissprot hit to Uncharacterized protein HI0220.2. from Haemophilus influenzae%3B high Ref YP hit to Uracil-DNA glycosylase superfamily %5BJannaschia sp. CCS1%5D.;Dbxref=Genbank:YP_001531935.1,GeneID:5712042;gbkey=CDS;product=uracil-DNA glycosylase superfamily;protein_id=YP_001531935.1;transl_table=11
NC_009952.1	RefSeq	gene	579497	580282	.	+	.	ID=gene597;Name=Dshi_0589;Dbxref=GeneID:5712043;gbkey=Gene;locus_tag=Dshi_0589
NC_009952.1	RefSeq	CDS	579497	580282	.	+	0	ID=cds585;Name=YP_001531936.1;Parent=gene597;Note=unsure GC frame plot%2C no significant swissprot%3B no conserved domains detected%3B high Ref ZP hit to hypothetical protein R2601_11544 %5BRoseovarius sp. HTCC2601%5D;Dbxref=Genbank:YP_001531936.1,GeneID:5712043;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531936.1;transl_table=11
NC_009952.1	RefSeq	gene	580316	581251	.	-	.	ID=gene598;Name=Dshi_0590;Dbxref=GeneID:5712044;gbkey=Gene;locus_tag=Dshi_0590
NC_009952.1	RefSeq	CDS	580316	581251	.	-	0	ID=cds586;Name=YP_001531937.1;Parent=gene598;Note=PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding%3B middle swissprot hit to Putative 2-hydroxyacid dehydrogenase ycdW from Escherichia coli K12%3B high Ref ZP hit to D-isomer specific 2-hydroxyacid dehydrogenase family protein from Roseovarius sp. 217;Dbxref=Genbank:YP_001531937.1,GeneID:5712044;gbkey=CDS;product=D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding subunit;protein_id=YP_001531937.1;transl_table=11
NC_009952.1	RefSeq	gene	581261	582400	.	-	.	ID=gene599;Name=mreD1;Dbxref=GeneID:5712045;gbkey=Gene;gene=mreD1;locus_tag=Dshi_0591
NC_009952.1	RefSeq	CDS	581261	582400	.	-	0	ID=cds587;Name=YP_001531938.1;Parent=gene599;Note=TIGRFAM: rod shape-determining protein RodA PFAM: cell cycle protein%3B NCBI conserved domains: COG0772%2C FtsW%2C Bacterial cell division membrane protein%3B good swissprot hit to Rod shape-determining protein rodA from Haemophilus influenzae%3B high Ref ZP hit to rod shape-determining protein MreD %5BRoseobacter sp. AzwK-3b%5D.;Dbxref=Genbank:YP_001531938.1,GeneID:5712045;gbkey=CDS;gene=mreD1;product=rod shape-determining protein MreD;protein_id=YP_001531938.1;transl_table=11
NC_009952.1	RefSeq	gene	582397	584340	.	-	.	ID=gene600;Name=ftsI1;Dbxref=GeneID:5712046;gbkey=Gene;gene=ftsI1;locus_tag=Dshi_0592
NC_009952.1	RefSeq	CDS	582397	584340	.	-	0	ID=cds588;Name=YP_001531939.1;Parent=gene600;Note=PFAM: penicillin-binding protein transpeptidase%3B Penicillin-binding protein dimerisation domain%2C NCBI conserved domains: COG0768%2C FtsI%2C Cell division protein FtsI%2Fpenicillin-binding protein 2%3B high swissprot hit to Penicillin-binding protein 2 from Haemophilus influenzae%3B high Ref ZP hit to penicillin-binding protein 2 %5BRoseobacter sp. CCS2%5D.%3B penicillin-binding protein %28pbp-2%29;Dbxref=Genbank:YP_001531939.1,GeneID:5712046;gbkey=CDS;gene=ftsI1;product=division-specific transpeptidase;protein_id=YP_001531939.1;transl_table=11
NC_009952.1	RefSeq	gene	584337	584876	.	-	.	ID=gene601;Name=mreD2;Dbxref=GeneID:5712047;gbkey=Gene;gene=mreD2;locus_tag=Dshi_0593
NC_009952.1	RefSeq	CDS	584337	584876	.	-	0	ID=cds589;Name=YP_001531940.1;Parent=gene601;Note=no significant swissprot%3B no conserved domains%2C except from one signalpep. and four transmembr. regions%3B low Ref ZP hit to putative rod shape-determining protein MreD %5BRoseobacter sp. CCS2%5D.;Dbxref=Genbank:YP_001531940.1,GeneID:5712047;gbkey=CDS;gene=mreD2;product=putative rod shape-determining protein MreD;protein_id=YP_001531940.1;transl_table=11
NC_009952.1	RefSeq	gene	584869	585768	.	-	.	ID=gene602;Name=mreC;Dbxref=GeneID:5712048;gbkey=Gene;gene=mreC;locus_tag=Dshi_0594
NC_009952.1	RefSeq	CDS	584869	585768	.	-	0	ID=cds590;Name=YP_001531941.1;Parent=gene602;Note=in some organisms this protein is a transmembrane protein while in others it is periplasmic%3B involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall;Dbxref=Genbank:YP_001531941.1,GeneID:5712048;gbkey=CDS;gene=mreC;product=rod shape-determining protein MreC;protein_id=YP_001531941.1;transl_table=11
NC_009952.1	RefSeq	gene	585804	586841	.	-	.	ID=gene603;Name=mreB;Dbxref=GeneID:5712049;gbkey=Gene;gene=mreB;locus_tag=Dshi_0595
NC_009952.1	RefSeq	CDS	585804	586841	.	-	0	ID=cds591;Name=YP_001531942.1;Parent=gene603;Note=functions in MreBCD complex in some organisms;Dbxref=Genbank:YP_001531942.1,GeneID:5712049;gbkey=CDS;gene=mreB;product=rod shape-determining protein MreB;protein_id=YP_001531942.1;transl_table=11
NC_009952.1	RefSeq	gene	587090	588667	.	-	.	ID=gene604;Name=leuA;Dbxref=GeneID:5712050;gbkey=Gene;gene=leuA;locus_tag=Dshi_0596
NC_009952.1	RefSeq	CDS	587090	588667	.	-	0	ID=cds592;Name=YP_001531943.1;Parent=gene604;Note=catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis;Dbxref=Genbank:YP_001531943.1,GeneID:5712050;gbkey=CDS;gene=leuA;product=2-isopropylmalate synthase;protein_id=YP_001531943.1;transl_table=11
NC_009952.1	RefSeq	gene	588851	589648	.	-	.	ID=gene605;Name=Dshi_0597;Dbxref=GeneID:5712051;gbkey=Gene;locus_tag=Dshi_0597
NC_009952.1	RefSeq	CDS	588851	589648	.	-	0	ID=cds593;Name=YP_001531944.1;Parent=gene605;Note=InterPro Scan: G3DSA:2.120.10.30 Six-bladed beta-propeller%2C TolB-like%3B NCBI conserved domains: COG3391%2C Uncharacterized conserved protein%3B no significant swissprot hit%3B middle Ref YP hit to hypothetical protein RD1_3731 %5BRoseobacter denitrificans OCh 114%5D.;Dbxref=Genbank:YP_001531944.1,GeneID:5712051;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531944.1;transl_table=11
NC_009952.1	RefSeq	gene	589775	590440	.	+	.	ID=gene606;Name=Dshi_0598;Dbxref=GeneID:5712052;gbkey=Gene;locus_tag=Dshi_0598
NC_009952.1	RefSeq	CDS	589775	590440	.	+	0	ID=cds594;Name=YP_001531945.1;Parent=gene606;Note=PFAM: short-chain dehydrogenase%2Freductase SDR%3B NCBI conserved domains: PRK09009%2C C factor cell-cell signaling protein and PRK06953%2C short chain dehydrogenase%3B low swissprot hit to C-factor %28C signal%29 from Myxococcus xanthus%3B high Ref YP hit to C factor%2C cell signaling protein%2C putative %5BRoseobacter denitrificans OCh 114%5D.;Dbxref=Genbank:YP_001531945.1,GeneID:5712052;gbkey=CDS;product=short-chain dehydrogenase%2Freductase SDR;protein_id=YP_001531945.1;transl_table=11
NC_009952.1	RefSeq	gene	590437	591963	.	+	.	ID=gene607;Name=Dshi_0599;Dbxref=GeneID:5712053;gbkey=Gene;locus_tag=Dshi_0599
NC_009952.1	RefSeq	CDS	590437	591963	.	+	0	ID=cds595;Name=YP_001531946.1;Parent=gene607;Note=PFAM: deoxyribodipyrimidine photolyase-related protein%3B NCBI conserved domains: pfam04244%2C DPRP%2C Deoxyribodipyrimidine photolyase-related protein and COG0415%2C PhrB%2C Deoxyribodipyrimidine photolyase%3B no significant swissprot%3B high Ref YP hit to deoxyribodipyrimidine photolyase-related protein %5BJannaschia sp. CCS1%5D;Dbxref=Genbank:YP_001531946.1,GeneID:5712053;gbkey=CDS;product=deoxyribodipyrimidine photolyase-like protein;protein_id=YP_001531946.1;transl_table=11
NC_009952.1	RefSeq	gene	592010	593416	.	-	.	ID=gene608;Name=Dshi_0600;Dbxref=GeneID:5712054;gbkey=Gene;locus_tag=Dshi_0600
NC_009952.1	RefSeq	CDS	592010	593416	.	-	0	ID=cds596;Name=YP_001531947.1;Parent=gene608;Note=PFAM: MORN repeat-containing protein%2C NCBI conserved domains: several repeats of COG4642%2C Uncharacterized protein conserved in bacteria%3B low swissprot hit to Radial spoke head 10 homolog B from Rattus norvegicus%3B high Ref YP hit to MORN repeat-containing protein %5BRhodobacter sphaeroides ATCC Q66HB5%5D;Dbxref=Genbank:YP_001531947.1,GeneID:5712054;gbkey=CDS;product=MORN repeat-containing protein;protein_id=YP_001531947.1;transl_table=11
NC_009952.1	RefSeq	gene	593670	595343	.	+	.	ID=gene609;Name=nadE;Dbxref=GeneID:5712055;gbkey=Gene;gene=nadE;locus_tag=Dshi_0601
NC_009952.1	RefSeq	CDS	593670	595343	.	+	0	ID=cds597;Name=YP_001531948.1;Parent=gene609;Note=NH%283%29-dependent%3B catalyzes the formation of nicotinamide adenine dinucleotide %28NAD%29 from nicotinic acid adenine dinucleotide %28NAAD%29 using either ammonia or glutamine as the amide donor and ATP%3B ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one%3B forms homodimers;Dbxref=Genbank:YP_001531948.1,GeneID:5712055;gbkey=CDS;gene=nadE;product=NAD synthetase;protein_id=YP_001531948.1;transl_table=11
NC_009952.1	RefSeq	gene	595527	595928	.	-	.	ID=gene610;Name=Dshi_0602;Dbxref=GeneID:5712056;gbkey=Gene;locus_tag=Dshi_0602
NC_009952.1	RefSeq	CDS	595527	595928	.	-	0	ID=cds598;Name=YP_001531949.1;Parent=gene610;Note=PFAM: protein of unknown function DUF1025%3B NCBI conserved domains: COG3824%2C Uncharacterized protein conserved in bacteria%3B bad swissprot hit to Putative metalloprotease XOO2769 from Xanthomonas oryzae pv. oryzae%3B middle Ref ZP hit to Neutral zinc metallopeptidase %5BRhodobacterales bacterium HTCC2654%5D.;Dbxref=Genbank:YP_001531949.1,GeneID:5712056;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531949.1;transl_table=11
NC_009952.1	RefSeq	gene	596472	596903	.	-	.	ID=gene611;Name=Dshi_0603;Dbxref=GeneID:5712057;gbkey=Gene;locus_tag=Dshi_0603
NC_009952.1	RefSeq	CDS	596472	596903	.	-	0	ID=cds599;Name=YP_001531950.1;Parent=gene611;Note=PFAM: thioesterase superfamily protein%2C NCBI conserved domains: cd03442%2C BFIT_BACH%2C Brown fat-inducible thioesterase %28BFIT%29. Brain acyl-CoA hydrolase %28BACH%29 and cd03440%2C hot_dog%3B middle swissprot hit to Uncharacterized acyl-CoA thioester hydrolase HI0827 from Haemophilus influenzae%3B middle emb cad hit to acyl-CoA thioester-like hydrolase %5BDefluvibacter lusatiensis%5D%3B unsure GC frame plot;Dbxref=Genbank:YP_001531950.1,GeneID:5712057;gbkey=CDS;product=thioesterase superfamily protein;protein_id=YP_001531950.1;transl_table=11
NC_009952.1	RefSeq	gene	596939	597799	.	-	.	ID=gene612;Name=Dshi_0604;Dbxref=GeneID:5712058;gbkey=Gene;locus_tag=Dshi_0604
NC_009952.1	RefSeq	CDS	596939	597799	.	-	0	ID=cds600;Name=YP_001531951.1;Parent=gene612;Note=PFAM: amidohydrolase 2%3B CNBI conserved domains: cd01311%2C PDC_hydrolase%2C COG2159%2C Predicted metal-dependent hydrolase%2C no significant swissprot%3B unsure GC frame plot%3B high Ref YP hit to amidohydrolase 2 %5BBurkholderia multivorans ATCC 17616%5D.;Dbxref=Genbank:YP_001531951.1,GeneID:5712058;gbkey=CDS;product=amidohydrolase family protein;protein_id=YP_001531951.1;transl_table=11
NC_009952.1	RefSeq	gene	597820	599106	.	-	.	ID=gene613;Name=dctM5;Dbxref=GeneID:5712059;gbkey=Gene;gene=dctM5;locus_tag=Dshi_0605
NC_009952.1	RefSeq	CDS	597820	599106	.	-	0	ID=cds601;Name=YP_001531952.1;Parent=gene613;Note=TIGRFAM: TRAP dicarboxylate transporter%2C DctM subunit PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit%3B middle swissprot hit to Sialic acid TRAP transporter permease protein siaT from Haemophilus influenzae 86-028NP%3B high Ref ZP hit to TRAP dicarboxylate transporter%2C DctM subunit %5BShewanella woodyi ATCC 51908%5D%3B DctM subunit;Dbxref=Genbank:YP_001531952.1,GeneID:5712059;gbkey=CDS;gene=dctM5;product=TRAP dicarboxylate transporter;protein_id=YP_001531952.1;transl_table=11
NC_009952.1	RefSeq	gene	599132	599698	.	-	.	ID=gene614;Name=Dshi_0606;Dbxref=GeneID:5712060;gbkey=Gene;locus_tag=Dshi_0606
NC_009952.1	RefSeq	CDS	599132	599698	.	-	0	ID=cds602;Name=YP_001531953.1;Parent=gene614;Note=unsure GC frame plot%2C no significant swissprot%2C no conserved domains%3B low Ref ZP hit to TRAP transporter%2C transmembrane protein%2C putative %5BRoseovarius sp. HTCC2601%5D;Dbxref=Genbank:YP_001531953.1,GeneID:5712060;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531953.1;transl_table=11
NC_009952.1	RefSeq	gene	599763	600845	.	-	.	ID=gene615;Name=dctP5;Dbxref=GeneID:5712061;gbkey=Gene;gene=dctP5;locus_tag=Dshi_0607
NC_009952.1	RefSeq	CDS	599763	600845	.	-	0	ID=cds603;Name=YP_001531954.1;Parent=gene615;Note=PFAM: TRAP dicarboxylate transporter- DctP subunit%3B NCBI conserved domains: COG1638%2C DctP%2C TRAP-type C4-dicarboxylate transport system%2C periplasmic component%3B no significant swissprot%3B good Ref ZP hit to TRAP dicarboxylate transporter- DctP subunit %5BShewanella woodyi ATCC 51908%5D;Dbxref=Genbank:YP_001531954.1,GeneID:5712061;gbkey=CDS;gene=dctP5;product=TRAP dicarboxylate transporter subunit DctP;protein_id=YP_001531954.1;transl_table=11
NC_009952.1	RefSeq	gene	600943	601713	.	-	.	ID=gene616;Name=Dshi_0608;Dbxref=GeneID:5712062;gbkey=Gene;locus_tag=Dshi_0608
NC_009952.1	RefSeq	CDS	600943	601713	.	-	0	ID=cds604;Name=YP_001531955.1;Parent=gene616;Note=unsure GC frame plot%3B no significant swissprot%3B no conserved domains%3B low Ref YP hit to hypothetical protein TM1040_3278 %5BSilicibacter sp. TM1040%5D.;Dbxref=Genbank:YP_001531955.1,GeneID:5712062;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531955.1;transl_table=11
NC_009952.1	RefSeq	gene	601843	603387	.	+	.	ID=gene617;Name=Dshi_0609;Dbxref=GeneID:5712063;gbkey=Gene;locus_tag=Dshi_0609
NC_009952.1	RefSeq	CDS	601843	603387	.	+	0	ID=cds605;Name=YP_001531956.1;Parent=gene617;Note=unsure GC frame plot%3B PFAM: regulatory protein GntR HTH%3B aminotransferase class I and II%3B SSF53383 Pyridoxal phosphate-dependent transferase%2C major region%3B good swissprot hit to HTH-type pyridoxine biosynthesis transcriptional regulator pdxR from Corynebacterium glutamicum %28position Ser-301 of subject correlates to position Ser-300 of Query in alignment%29 %3B high Ref YP hit to transcriptional regulator%2C GntR family %5BRubrobacter xylanophilus DSM 9941%5D;Dbxref=Genbank:YP_001531956.1,GeneID:5712063;gbkey=CDS;product=GntR family transcriptional regulator;protein_id=YP_001531956.1;transl_table=11
NC_009952.1	RefSeq	gene	603311	604093	.	-	.	ID=gene618;Name=Dshi_0610;Dbxref=GeneID:5712064;gbkey=Gene;locus_tag=Dshi_0610
NC_009952.1	RefSeq	CDS	603311	604093	.	-	0	ID=cds606;Name=YP_001531957.1;Parent=gene618;Note=unsure GC frame plot%2C good swissprot hit to UPF0317 protein BP1875 from Bordetella pertussis%3B high gb hit to hypothetical protein HPDFL43_09917 %5BHoeflea phototrophica DFL-43%5D;Dbxref=Genbank:YP_001531957.1,GeneID:5712064;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531957.1;transl_table=11
NC_009952.1	RefSeq	gene	604086	604418	.	-	.	ID=gene619;Name=Dshi_0611;Dbxref=GeneID:5712065;gbkey=Gene;locus_tag=Dshi_0611
NC_009952.1	RefSeq	CDS	604086	604418	.	-	0	ID=cds607;Name=YP_001531958.1;Parent=gene619;Note=unsure GC frame plot%3B PFAM: NIPSNAP family containing protein%3B NCBI conserved domains: NIPSNAP%3B bad swissprot hit to Protein NipSnap3A from Homo sapiens%3B low Ref YP hit to NIPSNAP family containing protein %5BDelftia acidovorans SPH-1%5D.;Dbxref=Genbank:YP_001531958.1,GeneID:5712065;gbkey=CDS;product=NIPSNAP family containing protein;protein_id=YP_001531958.1;transl_table=11
NC_009952.1	RefSeq	gene	605184	606101	.	-	.	ID=gene620;Name=Dshi_0612;Dbxref=GeneID:5712066;gbkey=Gene;locus_tag=Dshi_0612
NC_009952.1	RefSeq	CDS	605184	606101	.	-	0	ID=cds608;Name=YP_001531959.1;Parent=gene620;Note=PFAM: beta-lactamase domain protein%3B NCBI conserved domains: COG0491%2C GloB%2C Zn-dependent hydrolases%2C including glyoxylases%3B no significant swissprot%3B high Ref ZP hit to metallo-beta-lactamase family protein%2C putative %5BRoseobacter sp. CCS2%5D;Dbxref=Genbank:YP_001531959.1,GeneID:5712066;gbkey=CDS;product=beta-lactamase domain-containing protein;protein_id=YP_001531959.1;transl_table=11
NC_009952.1	RefSeq	gene	606284	607171	.	+	.	ID=gene621;Name=Dshi_0613;Dbxref=GeneID:5712067;gbkey=Gene;locus_tag=Dshi_0613
NC_009952.1	RefSeq	CDS	606284	607171	.	+	0	ID=cds609;Name=YP_001531960.1;Parent=gene621;Note=PFAM: band 7 protein%3B NCBI conserved domains: band_7 and COG0330%2C HflC%2C Membrane protease subunits%2C stomatin%2Fprohibitin homologs%3B good swissprot hit to Uncharacterized protein ybbK from Escherichia coli K12%3B high Ref ZP hit to SPFH domain%2Fband 7 family protein %5BSagittula stellata E-37%5D.;Dbxref=Genbank:YP_001531960.1,GeneID:5712067;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531960.1;transl_table=11
NC_009952.1	RefSeq	gene	607171	607452	.	+	.	ID=gene622;Name=Dshi_0614;Dbxref=GeneID:5712068;gbkey=Gene;locus_tag=Dshi_0614
NC_009952.1	RefSeq	CDS	607171	607452	.	+	0	ID=cds610;Name=YP_001531961.1;Parent=gene622;Note=PFAM01957 Nodulation efficiency%2C NfeD%3B no significant swissprot%3B low Ref YP hit to hypothetical protein Rsph17025_2810 %5BRhodobacter sphaeroides ATCC 17025%5D.;Dbxref=Genbank:YP_001531961.1,GeneID:5712068;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531961.1;transl_table=11
NC_009952.1	RefSeq	gene	607474	608172	.	-	.	ID=gene623;Name=pyrF;Dbxref=GeneID:5712069;gbkey=Gene;gene=pyrF;locus_tag=Dshi_0615
NC_009952.1	RefSeq	CDS	607474	608172	.	-	0	ID=cds611;Name=YP_001531962.1;Parent=gene623;Note=type 1 subfamily%3B involved in last step of pyrimidine biosynthesis%3B converts orotidine 5%27-phosphate to UMP and carbon dioxide%3B OMP decarboxylase%3B OMPDCase%3B OMPdecase;Dbxref=Genbank:YP_001531962.1,GeneID:5712069;gbkey=CDS;gene=pyrF;product=orotidine 5%27-phosphate decarboxylase;protein_id=YP_001531962.1;transl_table=11
NC_009952.1	RefSeq	gene	608284	608697	.	+	.	ID=gene624;Name=Dshi_0616;Dbxref=GeneID:5712070;gbkey=Gene;locus_tag=Dshi_0616
NC_009952.1	RefSeq	CDS	608284	608697	.	+	0	ID=cds612;Name=YP_001531963.1;Parent=gene624;Note=unsure GC frame plot%2C no significant BLAST hits%3B no conserved domains;Dbxref=Genbank:YP_001531963.1,GeneID:5712070;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531963.1;transl_table=11
NC_009952.1	RefSeq	gene	609070	611685	.	+	.	ID=gene625;Name=clpB;Dbxref=GeneID:5712071;gbkey=Gene;gene=clpB;locus_tag=Dshi_0617
NC_009952.1	RefSeq	CDS	609070	611685	.	+	0	ID=cds613;Name=YP_001531964.1;Parent=gene625;Note=PFAM: AAA ATPase central domain protein%3B Clp domain protein%3B ATPase associated with various cellular activities AAA_5%3B ATPase AAA-2 domain protein SMART: AAA ATPase%3B high swissprot hit to Chaperone protein clpB from Brucella suis%3B high Ref ZP hit to ATP-dependent Clp protease%2C ATP-binding subunit ClpB %5BRoseobacter sp. CCS2%5D.;Dbxref=Genbank:YP_001531964.1,GeneID:5712071;gbkey=CDS;gene=clpB;product=chaperone protein clpB;protein_id=YP_001531964.1;transl_table=11
NC_009952.1	RefSeq	gene	611730	612320	.	+	.	ID=gene626;Name=Dshi_0618;Dbxref=GeneID:5712072;gbkey=Gene;locus_tag=Dshi_0618
NC_009952.1	RefSeq	CDS	611730	612320	.	+	0	ID=cds614;Name=YP_001531965.1;Parent=gene626;Note=unsure GC frame plot%2C no significant swissprot%2C no conserved domains %28except from one signalpep. and two transmem. regions%29%3B middle gb hit to hypothetical protein RLO149_06672 %5BRoseobacter litoralis Och 149%5D.;Dbxref=Genbank:YP_001531965.1,GeneID:5712072;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531965.1;transl_table=11
NC_009952.1	RefSeq	gene	612549	612863	.	+	.	ID=gene627;Name=Dshi_0619;Dbxref=GeneID:5712073;gbkey=Gene;locus_tag=Dshi_0619
NC_009952.1	RefSeq	CDS	612549	612863	.	+	0	ID=cds615;Name=YP_001531966.1;Parent=gene627;Note=no significant swissprot%2C no conserved domains detected%3B bad Ref ZP hit to SNase-like nuclease %5BRoseobacter sp. AzwK-3b%5D.;Dbxref=Genbank:YP_001531966.1,GeneID:5712073;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531966.1;transl_table=11
NC_009952.1	RefSeq	gene	612860	613612	.	-	.	ID=gene628;Name=fabG2;Dbxref=GeneID:5712074;gbkey=Gene;gene=fabG2;locus_tag=Dshi_0620
NC_009952.1	RefSeq	CDS	612860	613612	.	-	0	ID=cds616;Name=YP_001531967.1;Parent=gene628;Note=PFAM: short-chain dehydrogenase%2Freductase SDR%3B KR domain protein%3B NCBI conserved domains: fabG%3B middle swissprot hit to 3-oxoacyl-%5Bacyl-carrier-protein%5D reductase from Chlamydia trachomatis%3B high Ref ZP hit to oxidoreductase %5BRhodobacterales bacterium HTCC2150%5D.;Dbxref=Genbank:YP_001531967.1,GeneID:5712074;gbkey=CDS;gene=fabG2;product=3-oxoacyl-ACP reductase;protein_id=YP_001531967.1;transl_table=11
NC_009952.1	RefSeq	gene	613772	614260	.	-	.	ID=gene629;Name=Dshi_0621;Dbxref=GeneID:5712075;gbkey=Gene;locus_tag=Dshi_0621
NC_009952.1	RefSeq	CDS	613772	614260	.	-	0	ID=cds617;Name=YP_001531968.1;Parent=gene629;Note=PFAM02469 Fasciclin domain%3B NCBI conserved domains: COG2335%2C Secreted and surface protein containing fasciclin-like repeats%3B middle swissprot hit to Uncharacterized protein sll1483 precursor from Synechocystis sp. PCC 6803%3B middle Ref ZP hit to beta-Ig-H3%2Ffasciclin %5BRoseovarius sp. TM1035%5D;Dbxref=Genbank:YP_001531968.1,GeneID:5712075;gbkey=CDS;product=fasciclin domain-containing protein;protein_id=YP_001531968.1;transl_table=11
NC_009952.1	RefSeq	gene	614334	614825	.	-	.	ID=gene630;Name=Dshi_0622;Dbxref=GeneID:5712076;gbkey=Gene;locus_tag=Dshi_0622
NC_009952.1	RefSeq	CDS	614334	614825	.	-	0	ID=cds618;Name=YP_001531969.1;Parent=gene630;Note=PFAM02469 Fasciclin domain%3B NCBI conserved domains: COG2335%2C Secreted and surface protein containing fasciclin-like repeats%3B middle swissprot hit to Uncharacterized protein sll1483 precursor from Synechocystis sp. PCC 6803%3B good Ref ZP hit to beta-Ig-H3%2Ffasciclin %5BRoseovarius sp. TM1035%5D;Dbxref=Genbank:YP_001531969.1,GeneID:5712076;gbkey=CDS;product=fasciclin domain-containing protein;protein_id=YP_001531969.1;transl_table=11
NC_009952.1	RefSeq	gene	615171	616088	.	+	.	ID=gene631;Name=yedY;Dbxref=GeneID:5712077;gbkey=Gene;gene=yedY;locus_tag=Dshi_0623
NC_009952.1	RefSeq	CDS	615171	616088	.	+	0	ID=cds619;Name=YP_001531970.1;Parent=gene631;Note=in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase%3B sulfite oxidase activity not demonstrated%3B requires inner membrane anchor protein YedZ;Dbxref=Genbank:YP_001531970.1,GeneID:5712077;gbkey=CDS;gene=yedY;product=putative sulfite oxidase subunit YedY;protein_id=YP_001531970.1;transl_table=11
NC_009952.1	RefSeq	gene	616088	616696	.	+	.	ID=gene632;Name=yedZ;Dbxref=GeneID:5712078;gbkey=Gene;gene=yedZ;locus_tag=Dshi_0624
NC_009952.1	RefSeq	CDS	616088	616696	.	+	0	ID=cds620;Name=YP_001531971.1;Parent=gene632;Note=PFAM: Ferric reductase domain protein transmembrane component domain%3B NCBI conserved domains: PRK05419%2C putative sulfite oxidase subunit YedZ%2C middle swissprot hit to UPF0191 membrane protein yedZ from Escherichia coli O157:H7%3B good Ref YP hit to putative sulfite oxidase subunit YedZ %5BRoseobacter denitrificans OCh 114%5D;Dbxref=Genbank:YP_001531971.1,GeneID:5712078;gbkey=CDS;gene=yedZ;product=putative sulfite oxidase subunit YedZ;protein_id=YP_001531971.1;transl_table=11
NC_009952.1	RefSeq	gene	617247	618708	.	+	.	ID=gene633;Name=Dshi_6013;Dbxref=GeneID:5712079;gbkey=Gene;locus_tag=Dshi_6013
NC_009952.1	RefSeq	rRNA	617247	618708	.	+	.	ID=rna12;Parent=gene633;Dbxref=GeneID:5712079;gbkey=rRNA;product=16S ribosomal RNA
NC_009952.1	RefSeq	exon	617247	618708	.	+	.	ID=id14;Parent=rna12;Dbxref=GeneID:5712079;gbkey=rRNA;product=16S ribosomal RNA
NC_009952.1	RefSeq	gene	618985	619061	.	+	.	ID=gene634;Name=Dshi_6014;Dbxref=GeneID:5712080;gbkey=Gene;locus_tag=Dshi_6014
NC_009952.1	RefSeq	tRNA	618985	619061	.	+	.	ID=rna13;Parent=gene634;Dbxref=GeneID:5712080;codons=33;gbkey=tRNA;product=tRNA-Ile
NC_009952.1	RefSeq	exon	618985	619061	.	+	.	ID=id15;Parent=rna13;Dbxref=GeneID:5712080;codons=33;gbkey=tRNA;product=tRNA-Ile
NC_009952.1	RefSeq	gene	619237	619312	.	+	.	ID=gene635;Name=Dshi_6015;Dbxref=GeneID:5712081;gbkey=Gene;locus_tag=Dshi_6015
NC_009952.1	RefSeq	tRNA	619237	619312	.	+	.	ID=rna14;Parent=gene635;Dbxref=GeneID:5712081;codons=54;gbkey=tRNA;product=tRNA-Ala
NC_009952.1	RefSeq	exon	619237	619312	.	+	.	ID=id16;Parent=rna14;Dbxref=GeneID:5712081;codons=54;gbkey=tRNA;product=tRNA-Ala
NC_009952.1	RefSeq	gene	619776	622667	.	+	.	ID=gene636;Name=Dshi_6016;Dbxref=GeneID:5712082;gbkey=Gene;locus_tag=Dshi_6016
NC_009952.1	RefSeq	rRNA	619776	622667	.	+	.	ID=rna15;Parent=gene636;Dbxref=GeneID:5712082;gbkey=rRNA;product=23S ribosomal RNA
NC_009952.1	RefSeq	exon	619776	619939	.	+	.	ID=id17;Parent=rna15;Dbxref=GeneID:5712082;gbkey=rRNA;product=23S ribosomal RNA
NC_009952.1	RefSeq	exon	620020	622667	.	+	.	ID=id18;Parent=rna15;Dbxref=GeneID:5712082;gbkey=rRNA;product=23S ribosomal RNA
NC_009952.1	RefSeq	gene	622877	622994	.	+	.	ID=gene637;Name=Dshi_6017;Dbxref=GeneID:5712083;gbkey=Gene;locus_tag=Dshi_6017
NC_009952.1	RefSeq	rRNA	622877	622994	.	+	.	ID=rna16;Parent=gene637;Dbxref=GeneID:5712083;gbkey=rRNA;product=5S ribosomal RNA
NC_009952.1	RefSeq	exon	622877	622994	.	+	.	ID=id19;Parent=rna16;Dbxref=GeneID:5712083;gbkey=rRNA;product=5S ribosomal RNA
NC_009952.1	RefSeq	gene	623104	623826	.	+	.	ID=gene638;Name=Dshi_0625;Dbxref=GeneID:5712084;gbkey=Gene;locus_tag=Dshi_0625
NC_009952.1	RefSeq	CDS	623104	623826	.	+	0	ID=cds621;Name=YP_001531972.1;Parent=gene638;Note=unsure GC frame plot%2C no significant BLAST hits;Dbxref=Genbank:YP_001531972.1,GeneID:5712084;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531972.1;transl_table=11
NC_009952.1	RefSeq	gene	624057	624743	.	+	.	ID=gene639;Name=Dshi_0626;Dbxref=GeneID:5712085;gbkey=Gene;locus_tag=Dshi_0626
NC_009952.1	RefSeq	CDS	624057	624743	.	+	0	ID=cds622;Name=YP_001531973.1;Parent=gene639;Note=PFAM: binding-protein-dependent transport systems inner membrane component%3B NCBI conserved domains: COG4662%2C TupA%2C ABC-type tungstate transport system%2C periplasmic component%3B low swissprot hit to Sulfate transport system permease protein cysW from Escherichia coli K12%3B high Ref ZP hit to sulfate%2Ftungstate uptake family ABC transporter%2C permease protein from Roseovarius sp. 217%3B permease protein;Dbxref=Genbank:YP_001531973.1,GeneID:5712085;gbkey=CDS;product=basic organic compound ABC-transporter;protein_id=YP_001531973.1;transl_table=11
NC_009952.1	RefSeq	gene	624736	625491	.	+	.	ID=gene640;Name=Dshi_0627;Dbxref=GeneID:5712086;gbkey=Gene;locus_tag=Dshi_0627
NC_009952.1	RefSeq	CDS	624736	625491	.	+	0	ID=cds623;Name=YP_001531974.1;Parent=gene640;Note=PFAM: ABC transporter related SMART: AAA ATPase%3B NCBI conserved domains: cd03260%2C ABC_PstB_phosphate_transporter%3B middle swissprot hit to Phosphate import ATP-binding protein pstB from Thermus thermophilus HB27%3B high Ref ZP hit to sulfate%2Ftungstate uptake family ABC transporter%2C ATP-binding from Roseovarius sp. 217%3B ATP-binding protein;Dbxref=Genbank:YP_001531974.1,GeneID:5712086;gbkey=CDS;product=basic organic compound ABC-transporter;protein_id=YP_001531974.1;transl_table=11
NC_009952.1	RefSeq	gene	625528	626358	.	+	.	ID=gene641;Name=Dshi_0628;Dbxref=GeneID:5712087;gbkey=Gene;locus_tag=Dshi_0628
NC_009952.1	RefSeq	CDS	625528	626358	.	+	0	ID=cds624;Name=YP_001531975.1;Parent=gene641;Note=PFAM: extracellular solute-binding protein family 1%2C NCBI conserved domains: tupB%3B no significant swissprot%3B high Ref ZP hit to sulfate%2Ftungstate uptake family ABC transporter%2C periplasmic substrate-binding protein from Stappia aggregata IAM 12614%3B periplasmic substrate-binding protein;Dbxref=Genbank:YP_001531975.1,GeneID:5712087;gbkey=CDS;product=basic organic compound ABC-transporter;protein_id=YP_001531975.1;transl_table=11
NC_009952.1	RefSeq	gene	626365	627237	.	-	.	ID=gene642;Name=Dshi_0629;Dbxref=GeneID:5712088;gbkey=Gene;locus_tag=Dshi_0629
NC_009952.1	RefSeq	CDS	626365	627237	.	-	0	ID=cds625;Name=YP_001531976.1;Parent=gene642;Note=TIGRFAM: DNA binding domain%2C excisionase family%2C NCBI conserved domains: COG1910%2C Periplasmic molybdate-binding protein%2Fdomain%3B bad swissprot hit to Putative molybdopterin biosynthesis protein MJ0886 from Methanocaldococcus jannaschii%3B high Ref ZP hit to Periplasmic molybdate-binding protein%2Fdomain %5BStappia aggregata IAM 12614%5D.;Dbxref=Genbank:YP_001531976.1,GeneID:5712088;gbkey=CDS;product=periplasmic substrate-binding protein;protein_id=YP_001531976.1;transl_table=11
NC_009952.1	RefSeq	gene	627302	628897	.	-	.	ID=gene643;Name=glpD;Dbxref=GeneID:5712089;gbkey=Gene;gene=glpD;locus_tag=Dshi_0630
NC_009952.1	RefSeq	CDS	627302	628897	.	-	0	ID=cds626;Name=YP_001531977.1;Parent=gene643;Note=in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions%3B anaerobic expression is repressed by the arcAB system%3B converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8%3B associates with the cytoplasmic membrane;Dbxref=Genbank:YP_001531977.1,GeneID:5712089;gbkey=CDS;gene=glpD;product=glycerol-3-phosphate dehydrogenase;protein_id=YP_001531977.1;transl_table=11
NC_009952.1	RefSeq	gene	629081	629854	.	+	.	ID=gene644;Name=glpR;Dbxref=GeneID:5712090;gbkey=Gene;gene=glpR;locus_tag=Dshi_0631
NC_009952.1	RefSeq	CDS	629081	629854	.	+	0	ID=cds627;Name=YP_001531978.1;Parent=gene644;Note=PFAM: regulatory protein DeoR%3B Helix-turn-helix type 11 domain protein%2C NCBI conserved domains: COG1349%2C GlpR%2C Transcriptional regulators of sugar metabolism%3B high swissprot hit to Glycerol-3-phosphate regulon repressor from Escherichia coli K12%3B high Ref ZP hit to probable glycerol-3-phosphate regulon repressor %5BRoseovarius sp. HTCC2601%5D.;Dbxref=Genbank:YP_001531978.1,GeneID:5712090;gbkey=CDS;gene=glpR;product=glycerol-3-phosphate regulon repressor;protein_id=YP_001531978.1;transl_table=11
NC_009952.1	RefSeq	gene	629832	630980	.	-	.	ID=gene645;Name=ackA;Dbxref=GeneID:5712091;gbkey=Gene;gene=ackA;locus_tag=Dshi_0632
NC_009952.1	RefSeq	CDS	629832	630980	.	-	0	ID=cds628;Name=YP_001531979.1;Parent=gene645;Note=TIGRFAM: acetate kinase PFAM: acetate and butyrate kinase KEGG: rde:RD1_3831 acetate kinase%3B Acetokinase;Dbxref=Genbank:YP_001531979.1,GeneID:5712091;gbkey=CDS;gene=ackA;product=acetate kinase;protein_id=YP_001531979.1;transl_table=11
NC_009952.1	RefSeq	gene	630977	632392	.	-	.	ID=gene646;Name=pta2;Dbxref=GeneID:5712092;gbkey=Gene;gene=pta2;locus_tag=Dshi_0633
NC_009952.1	RefSeq	CDS	630977	632392	.	-	0	ID=cds629;Name=YP_001531980.1;Parent=gene646;Note=Swissprot: Phosphate acetyltransferase %28Phosphotransacetylase%29 PFAM: phosphate acetyl%2Fbutaryl transferase%3B MaoC domain protein dehydratase KEGG: rpe:RPE_3163 phosphate butyryltransferase;Dbxref=Genbank:YP_001531980.1,GeneID:5712092;gbkey=CDS;gene=pta2;product=bifunctional enoyl-CoA hydratase%2Fphosphate acetyltransferase;protein_id=YP_001531980.1;transl_table=11
NC_009952.1	RefSeq	gene	632597	633406	.	+	.	ID=gene647;Name=Dshi_0634;Dbxref=GeneID:5712093;gbkey=Gene;locus_tag=Dshi_0634
NC_009952.1	RefSeq	CDS	632597	633406	.	+	0	ID=cds630;Name=YP_001531981.1;Parent=gene647;Note=no significant swissprot%2C no conserved domains%3B high gb hit to glycosyltransferase%2C putative %5BRoseobacter litoralis Och 149%5D.;Dbxref=Genbank:YP_001531981.1,GeneID:5712093;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531981.1;transl_table=11
NC_009952.1	RefSeq	gene	633409	635610	.	-	.	ID=gene648;Name=Dshi_0635;Dbxref=GeneID:5712094;gbkey=Gene;locus_tag=Dshi_0635
NC_009952.1	RefSeq	CDS	633409	635610	.	-	0	ID=cds631;Name=YP_001531982.1;Parent=gene648;Note=PFAM: cyclic nucleotide-binding%3B Sulfate transporter%2Fantisigma-factor antagonist STAS%3B Xanthine%2Furacil%2Fvitamin C permease%3B sulphate transporter%3B low swissprot hit to Uncharacterized vacuolar membrane protein YGR125W from Saccharomyces cerevisiae%3B high Ref YP hit to Sulfate permease and related transporters %5BMagnetospirillum magneticum AMB-1%5D.;Dbxref=Genbank:YP_001531982.1,GeneID:5712094;gbkey=CDS;product=putative sulfate permease with cyclic nucleotide-binding domain;protein_id=YP_001531982.1;transl_table=11
NC_009952.1	RefSeq	gene	635809	636474	.	-	.	ID=gene649;Name=Dshi_0636;Dbxref=GeneID:5712095;gbkey=Gene;locus_tag=Dshi_0636
NC_009952.1	RefSeq	CDS	635809	636474	.	-	0	ID=cds632;Name=YP_001531983.1;Parent=gene649;Note=PFAM: phospholipase%2FCarboxylesterase%3B NCBI conserved domains: COG0400%2C Predicted esterase%3B low swissprot hit to Acyl-protein thioesterase 1 from Yarrowia lipolytica%3B good gb hit to phospholipase%2FCarboxylesterase %5BRoseobacter litoralis Och 149%5D.;Dbxref=Genbank:YP_001531983.1,GeneID:5712095;gbkey=CDS;product=phospholipase%2Fcarboxylesterase;protein_id=YP_001531983.1;transl_table=11
NC_009952.1	RefSeq	gene	636471	637394	.	-	.	ID=gene650;Name=Dshi_0637;Dbxref=GeneID:5712096;gbkey=Gene;locus_tag=Dshi_0637
NC_009952.1	RefSeq	CDS	636471	637394	.	-	0	ID=cds633;Name=YP_001531984.1;Parent=gene650;Note=PFAM: Glyoxalase%2Fbleomycin resistance protein%2Fdioxygenase%3B NCBI conserved domains: see PFAM result before%3B middle swissprot hit to Chlorohydroquinone%2Fhydroquinone 1%2C2-dioxygenase from Sphingomonas paucimobilis%3B high Ref YP hit to glyoxylase family protein %5BRoseobacter denitrificans OCh 114%5D;Dbxref=Genbank:YP_001531984.1,GeneID:5712096;gbkey=CDS;product=glyoxalase%2Fbleomycin resistance protein%2Fdioxygenase;protein_id=YP_001531984.1;transl_table=11
NC_009952.1	RefSeq	gene	637586	638542	.	+	.	ID=gene651;Name=Dshi_0638;Dbxref=GeneID:5712097;gbkey=Gene;locus_tag=Dshi_0638
NC_009952.1	RefSeq	CDS	637586	638542	.	+	0	ID=cds634;Name=YP_001531985.1;Parent=gene651;Note=PFAM: ABC transporter related SMART: AAA ATPase%3B NCBI conserved domains: cd03265%2C ABC_DrrA%3B good swissprot hit to Uncharacterized ABC transporter ATP-binding protein yadG from Escherichia coli K12%3B high gb hit to ABC transporter%2C ATP-binding protein%2C putative %5BOceanibulbus indolifex HEL-45%5D.%3B ATP-binding protein;Dbxref=Genbank:YP_001531985.1,GeneID:5712097;gbkey=CDS;product=ABC-A-subfamily transporter;protein_id=YP_001531985.1;transl_table=11
NC_009952.1	RefSeq	gene	638539	639300	.	+	.	ID=gene652;Name=Dshi_0639;Dbxref=GeneID:5712098;gbkey=Gene;locus_tag=Dshi_0639
NC_009952.1	RefSeq	CDS	638539	639300	.	+	0	ID=cds635;Name=YP_001531986.1;Parent=gene652;Note=PFAM: ABC-2 type transporter%2C NCBI conserved domains: COG1682%2C TagG%2C ABC-type polysaccharide%2Fpolyol phosphate export systems%2C permease component%3B good swissprot hit to Inner membrane transport permease yadH from Escherichia coli K12%3B high Ref ZP hit to ABC transporter%2C permease protein %5BRoseobacter sp. SK209-2-6%5D.%3B permease protein;Dbxref=Genbank:YP_001531986.1,GeneID:5712098;gbkey=CDS;product=ABC transporter;protein_id=YP_001531986.1;transl_table=11
NC_009952.1	RefSeq	gene	639402	640199	.	+	.	ID=gene653;Name=Dshi_0640;Dbxref=GeneID:5712099;gbkey=Gene;locus_tag=Dshi_0640
NC_009952.1	RefSeq	CDS	639402	640199	.	+	0	ID=cds636;Name=YP_001531987.1;Parent=gene653;Note=PFAM: peptidase S49%3B NCBI conserved domains: COG0616%2C SppA%3B middle swissprot hit to Putative signal peptide peptidase sppA from Bacillus halodurans%3B high Ref ZP hit to peptidase S49 %5BRhodobacterales bacterium HTCC2150%5D.;Dbxref=Genbank:YP_001531987.1,GeneID:5712099;gbkey=CDS;product=peptidase S49;protein_id=YP_001531987.1;transl_table=11
NC_009952.1	RefSeq	gene	640204	640374	.	+	.	ID=gene654;Name=Dshi_0641;Dbxref=GeneID:5711476;gbkey=Gene;locus_tag=Dshi_0641
NC_009952.1	RefSeq	CDS	640204	640374	.	+	0	ID=cds637;Name=YP_001531988.1;Parent=gene654;Note=no swissprot%2C no conserved domains%2C bad Ref ZP hit to hypothetical protein ISM_10031 %5BRoseovarius nubinhibens ISM%5D.;Dbxref=Genbank:YP_001531988.1,GeneID:5711476;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531988.1;transl_table=11
NC_009952.1	RefSeq	gene	640377	641315	.	+	.	ID=gene655;Name=Dshi_0642;Dbxref=GeneID:5711477;gbkey=Gene;locus_tag=Dshi_0642
NC_009952.1	RefSeq	CDS	640377	641315	.	+	0	ID=cds638;Name=YP_001531989.1;Parent=gene655;Note=TIGRFAM: Na%2B%2FCa%2B antiporter%2C CaCA family PFAM: sodium%2Fcalcium exchanger membrane region%2C NCBI conserved domains: COG0530%2C ECM27%2C Ca2%2B%2FNa%2B antiporter%3B bad swissprot hit to Sodium%2Fpotassium%2Fcalcium exchanger 1 from Homo sapiens%3B high Ref ZP hit to K%2B-dependent Na%2B%2FCa%2B exchanger related-protein %5BRoseobacter sp. AzwK-3b%5D%3B CaCA family;Dbxref=Genbank:YP_001531989.1,GeneID:5711477;gbkey=CDS;product=Na%2B%2FCa%2B antiporter;protein_id=YP_001531989.1;transl_table=11
NC_009952.1	RefSeq	gene	641326	642117	.	+	.	ID=gene656;Name=Dshi_0643;Dbxref=GeneID:5711478;gbkey=Gene;locus_tag=Dshi_0643
NC_009952.1	RefSeq	CDS	641326	642117	.	+	0	ID=cds639;Name=YP_001531990.1;Parent=gene656;Note=PFAM: short-chain dehydrogenase%2Freductase SDR%3B KR domain protein%3B NCBI conserved domains: PRK09134%2C short chain dehydrogenase%3B middle swissprot hit to 3-oxoacyl-%5Bacyl-carrier-protein%5D reductase from Staphylococcus epidermidis ATCC 12228%3B high Ref ZP hit to short chain dehydrogenase %5BRoseobacter sp. AzwK-3b%5D.;Dbxref=Genbank:YP_001531990.1,GeneID:5711478;gbkey=CDS;product=short chain dehydrogenase;protein_id=YP_001531990.1;transl_table=11
NC_009952.1	RefSeq	gene	642411	644306	.	+	.	ID=gene657;Name=uvrC;Dbxref=GeneID:5711479;gbkey=Gene;gene=uvrC;locus_tag=Dshi_0644
NC_009952.1	RefSeq	CDS	642411	644306	.	+	0	ID=cds640;Name=YP_001531991.1;Parent=gene657;Note=The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5%27 and 3%27 sides of the lesion. The N-terminal half is responsible for the 3%27 incision and the C-terminal half is responsible for the 5%27 incision;Dbxref=Genbank:YP_001531991.1,GeneID:5711479;gbkey=CDS;gene=uvrC;product=excinuclease ABC subunit C;protein_id=YP_001531991.1;transl_table=11
NC_009952.1	RefSeq	gene	644406	645413	.	+	.	ID=gene658;Name=Dshi_0645;Dbxref=GeneID:5711480;gbkey=Gene;locus_tag=Dshi_0645
NC_009952.1	RefSeq	CDS	644406	645413	.	+	0	ID=cds641;Name=YP_001531992.1;Parent=gene658;Note=TIGRFAM: TRAP transporter solute receptor%2C TAXI family%3B NCBI conserved domains: COG2358%2C Imp%2C TRAP-type uncharacterized transport system%2C periplasmic component%3B no significant swissprot%3B high Ref YP hit to TRAP-type uncharacterized transport system%2C periplasmic component from Hahella chejuensis KCTC 2396%3B periplasmic component;Dbxref=Genbank:YP_001531992.1,GeneID:5711480;gbkey=CDS;product=TRAP-type transport system;protein_id=YP_001531992.1;transl_table=11
NC_009952.1	RefSeq	gene	645472	647574	.	+	.	ID=gene659;Name=Dshi_0646;Dbxref=GeneID:5711481;gbkey=Gene;locus_tag=Dshi_0646
NC_009952.1	RefSeq	CDS	645472	647574	.	+	0	ID=cds642;Name=YP_001531993.1;Parent=gene659;Note=TIGRFAM: TRAP transporter%2C 4TM%2F12TM fusion protein PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit%3B NCBI conserved domains: COG4666%2C TRAP-type uncharacterized transport system%2C fused permease componen%3B bad swissprot hit to Sialic acid TRAP transporter permease protein siaT from Haemophilus influenzae%3B high Ref ZP hit to TRAP-type uncharacterized transport system%2C fused permease components %5BRoseobacter sp. CCS2%5D.;Dbxref=Genbank:YP_001531993.1,GeneID:5711481;gbkey=CDS;product=TRAP-type transport system permease;protein_id=YP_001531993.1;transl_table=11
NC_009952.1	RefSeq	gene	647766	650513	.	+	.	ID=gene660;Name=Dshi_0647;Dbxref=GeneID:5711482;gbkey=Gene;locus_tag=Dshi_0647
NC_009952.1	RefSeq	CDS	647766	650513	.	+	0	ID=cds643;Name=YP_001531994.1;Parent=gene660;Note=InterPro Scan: Integrin alpha N-terminal domain superfamily%3B no significant swissprot%3B low Ref ZP hit to hypothetical protein RED65_02278 %5BOceanobacter sp. RED65%5D;Dbxref=Genbank:YP_001531994.1,GeneID:5711482;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531994.1;transl_table=11
NC_009952.1	RefSeq	gene	650663	651262	.	-	.	ID=gene661;Name=recR;Dbxref=GeneID:5711483;gbkey=Gene;gene=recR;locus_tag=Dshi_0648
NC_009952.1	RefSeq	CDS	650663	651262	.	-	0	ID=cds644;Name=YP_001531995.1;Parent=gene661;Note=involved in a recombinational process of DNA repair%2C independent of the recBC complex;Dbxref=Genbank:YP_001531995.1,GeneID:5711483;gbkey=CDS;gene=recR;product=recombination protein RecR;protein_id=YP_001531995.1;transl_table=11
NC_009952.1	RefSeq	gene	651279	651623	.	-	.	ID=gene662;Name=Dshi_0649;Dbxref=GeneID:5711484;gbkey=Gene;locus_tag=Dshi_0649
NC_009952.1	RefSeq	CDS	651279	651623	.	-	0	ID=cds645;Name=YP_001531996.1;Parent=gene662;Note=PFAM: conserved hypothetical protein%3B NCBI conserved domains: pfam02575%2C DUF149%2C Uncharacterised BCR%2C YbaB family COG0718%3B low swissprot hit to UPF0133 protein HD_0326 from Haemophilus ducreyi%3B middle Ref YP hit to conserved hypothetical protein 103 %5BJannaschia sp. CCS1%5D.;Dbxref=Genbank:YP_001531996.1,GeneID:5711484;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531996.1;transl_table=11
NC_009952.1	RefSeq	gene	651643	653406	.	-	.	ID=gene663;Name=dnaX;Dbxref=GeneID:5711485;gbkey=Gene;gene=dnaX;locus_tag=Dshi_0650
NC_009952.1	RefSeq	CDS	651643	653406	.	-	0	ID=cds646;Name=YP_001531997.1;Parent=gene663;Note=catalyzes the DNA-template-directed extension of the 3%27-end of a DNA strand%3B the tau chain serves as a scaffold to help in the dimerizaton of the alpha%2Cepsilon and theta core complex%3B the gamma chain seems to interact with the delta and delta%27 subunits to transfer the beta subunit on the DNA;Dbxref=Genbank:YP_001531997.1,GeneID:5711485;gbkey=CDS;gene=dnaX;product=DNA polymerase III subunits gamma and tau;protein_id=YP_001531997.1;transl_table=11
NC_009952.1	RefSeq	gene	653737	654693	.	+	.	ID=gene664;Name=Dshi_0651;Dbxref=GeneID:5711487;gbkey=Gene;locus_tag=Dshi_0651
NC_009952.1	RefSeq	CDS	653737	654693	.	+	0	ID=cds647;Name=YP_001531998.1;Parent=gene664;Note=PFAM: NUDIX hydrolase%3B NADH pyrophosphatase-like %3B Zinc ribbon NADH pyrophosphatase%3B NCBI conserved domains: cd03429%2C NADH_pyrophosphatase%3B middle swissprot hit to NADH pyrophosphatase from Escherichia coli O6%3B high Ref ZP hit to hydrolase%2C NUDIX family %5BLoktanella vestfoldensis SKA53%5D.;Dbxref=Genbank:YP_001531998.1,GeneID:5711487;gbkey=CDS;product=NUDIX hydrolase;protein_id=YP_001531998.1;transl_table=11
NC_009952.1	RefSeq	gene	654714	655202	.	+	.	ID=gene665;Name=Dshi_0652;Dbxref=GeneID:5711488;gbkey=Gene;locus_tag=Dshi_0652
NC_009952.1	RefSeq	CDS	654714	655202	.	+	0	ID=cds648;Name=YP_001531999.1;Parent=gene665;Note=no significant swissprot%3B no conserved domains%3B low Ref ZP hit to hypothetical protein NAS141_10191 %5BSulfitobacter sp. NAS-14.1%5D.;Dbxref=Genbank:YP_001531999.1,GeneID:5711488;gbkey=CDS;product=hypothetical protein;protein_id=YP_001531999.1;transl_table=11
NC_009952.1	RefSeq	gene	655248	656090	.	-	.	ID=gene666;Name=pheA2;Dbxref=GeneID:5711489;gbkey=Gene;gene=pheA2;locus_tag=Dshi_0653
NC_009952.1	RefSeq	CDS	655248	656090	.	-	0	ID=cds649;Name=YP_001532000.1;Parent=gene666;Note=catalyzes the formation of phenylpyruvate from prephenate in phenylalanine biosynthesis;Dbxref=Genbank:YP_001532000.1,GeneID:5711489;gbkey=CDS;gene=pheA2;product=prephenate dehydratase;protein_id=YP_001532000.1;transl_table=11
NC_009952.1	RefSeq	gene	656214	656738	.	+	.	ID=gene667;Name=cycM;Dbxref=GeneID:5711490;gbkey=Gene;gene=cycM;locus_tag=Dshi_0654
NC_009952.1	RefSeq	CDS	656214	656738	.	+	0	ID=cds650;Name=YP_001532001.1;Parent=gene667;Note=PFAM: cytochrome c class I%3B NCBI conserved domains: pfam00034%2C Cytochrom_C%3B middle swissprot hit to Cytochrome c-552 from Paracoccus denitrificans%3B middle Ref ZP hit to cytochrome c552 %5BRoseobacter sp. AzwK-3b%5D.;Dbxref=Genbank:YP_001532001.1,GeneID:5711490;gbkey=CDS;gene=cycM;product=cytochrome c552;protein_id=YP_001532001.1;transl_table=11
NC_009952.1	RefSeq	gene	656989	658890	.	+	.	ID=gene668;Name=oppA;Dbxref=GeneID:5711491;gbkey=Gene;gene=oppA;locus_tag=Dshi_0655
NC_009952.1	RefSeq	CDS	656989	658890	.	+	0	ID=cds651;Name=YP_001532002.1;Parent=gene668;Note=PFAM: extracellular solute-binding protein family 5%3B NCBI conserved domains: COG4166%2C OppA%2C ABC-type oligopeptide transport system%3B high swissprot hit to Uncharacterized protein yejA precursor from Escherichia coli K12%3B high Ref hit to ABC peptide transporter%2C substrate binding protein %5BRhodobacter sphaeroides 2.4.1%5D.%3B substrate binding protein%3B alternative gene name: dppA;Dbxref=Genbank:YP_001532002.1,GeneID:5711491;gbkey=CDS;gene=oppA;product=ABC peptide transporter;protein_id=YP_001532002.1;transl_table=11
NC_009952.1	RefSeq	gene	658895	659992	.	+	.	ID=gene669;Name=oppBC1;Dbxref=GeneID:5711492;gbkey=Gene;gene=oppBC1;locus_tag=Dshi_0656
NC_009952.1	RefSeq	CDS	658895	659992	.	+	0	ID=cds652;Name=YP_001532003.1;Parent=gene669;Note=PFAM: binding-protein-dependent transport systems inner membrane component%3B NCBI conserved domains: COG0601%2C DppB%2C ABC-type dipeptide%2Foligopeptide%2Fnickel transport systems%2C permease components%3B high swissprot hit to Inner membrane ABC transporter permease protein yejB from Escherichia coli K12%3B high Ref ZP hit to ABC peptide transporter%2C inner membrane subunit %5BSulfitobacter sp. NAS-14.1%5D%3B permease protein%3B alternative gene name: dppBC;Dbxref=Genbank:YP_001532003.1,GeneID:5711492;gbkey=CDS;gene=oppBC1;product=ABC peptide transporter;protein_id=YP_001532003.1;transl_table=11
NC_009952.1	RefSeq	gene	659994	661172	.	+	.	ID=gene670;Name=oppBC2;Dbxref=GeneID:5711493;gbkey=Gene;gene=oppBC2;locus_tag=Dshi_0657
NC_009952.1	RefSeq	CDS	659994	661172	.	+	0	ID=cds653;Name=YP_001532004.1;Parent=gene670;Note=PFAM: binding-protein-dependent transport systems inner membrane component%3B NCBI conserved domains: COG1173%2C DppC%2C ABC-type dipeptide%2Foligopeptide%2Fnickel transport systems%2C permease components%3B high swissprot hit to Inner membrane ABC transporter permease protein yejE from Escherichia coli K12%3B high Ref YP hit to ABC peptide transporter%2C inner membrane subunit %5BRhodobacter Rhodobacter sphaeroides 2.4.1%5D%3B permease protein%3B alternative gene name: dppBC;Dbxref=Genbank:YP_001532004.1,GeneID:5711493;gbkey=CDS;gene=oppBC2;product=ABC peptide transporter;protein_id=YP_001532004.1;transl_table=11
NC_009952.1	RefSeq	gene	661169	662770	.	+	.	ID=gene671;Name=oppDF;Dbxref=GeneID:5711494;gbkey=Gene;gene=oppDF;locus_tag=Dshi_0658
NC_009952.1	RefSeq	CDS	661169	662770	.	+	0	ID=cds654;Name=YP_001532005.1;Parent=gene671;Note=PFAM: ABC transporter related%3B Oligopeptide%2Fdipeptide ABC transporter domain protein%3B NCBI conserved domains: cd03257%2C ABC_NikE_OppD_transporters%3B high swissprot hit to Uncharacterized ABC transporter ATP-binding protein yejF from Escherichia coli K12%3B high Ref ZP hit to peptide ABC transporter%2C ATP-binding protein%2C putative %5BRoseobacter sp. CCS2%5D%3B ATP-binding protein%3B alternative gene name: dppDF;Dbxref=Genbank:YP_001532005.1,GeneID:5711494;gbkey=CDS;gene=oppDF;product=ABC peptide transporter;protein_id=YP_001532005.1;transl_table=11
NC_009952.1	RefSeq	gene	662948	664309	.	-	.	ID=gene672;Name=hemN2;Dbxref=GeneID:5711495;gbkey=Gene;gene=hemN2;locus_tag=Dshi_0659
NC_009952.1	RefSeq	CDS	662948	664309	.	-	0	ID=cds655;Name=YP_001532006.1;Parent=gene672;Note=catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III;Dbxref=Genbank:YP_001532006.1,GeneID:5711495;gbkey=CDS;gene=hemN2;product=coproporphyrinogen III oxidase;protein_id=YP_001532006.1;transl_table=11
NC_009952.1	RefSeq	gene	664362	665111	.	+	.	ID=gene673;Name=fixK;Dbxref=GeneID:5711496;gbkey=Gene;gene=fixK;locus_tag=Dshi_0660
NC_009952.1	RefSeq	CDS	664362	665111	.	+	0	ID=cds656;Name=YP_001532007.1;Parent=gene673;Note=PFAM: cyclic nucleotide-binding%3B regulatory protein Crp%2C NCBI conserved domains: PRK09391%2C fixK%2C transcriptional regulator FixK%3B high swissprot hit to Transcriptional activator protein fnrL from Rhodobacter sphaeroides 2.4.1%3B high Ref ZP hit to transcriptional activator protein FnrL %5BRoseovarius sp. 217%5D.%3B Crp%2FFnr family%3B alternative gene name: fnrL;Dbxref=Genbank:YP_001532007.1,GeneID:5711496;gbkey=CDS;gene=fixK;product=transcriptional regulator;protein_id=YP_001532007.1;transl_table=11
NC_009952.1	RefSeq	gene	665449	667050	.	+	.	ID=gene674;Name=fixN;Dbxref=GeneID:5711497;gbkey=Gene;gene=fixN;locus_tag=Dshi_0661
NC_009952.1	RefSeq	CDS	665449	667050	.	+	0	ID=cds657;Name=YP_001532008.1;Parent=gene674;Note=CcoN%3B FixN;Dbxref=Genbank:YP_001532008.1,GeneID:5711497;gbkey=CDS;gene=fixN;product=cbb3-type cytochrome c oxidase subunit I;protein_id=YP_001532008.1;transl_table=11
NC_009952.1	RefSeq	gene	667065	667790	.	+	.	ID=gene675;Name=fixO;Dbxref=GeneID:5711498;gbkey=Gene;gene=fixO;locus_tag=Dshi_0662
NC_009952.1	RefSeq	CDS	667065	667790	.	+	0	ID=cds658;Name=YP_001532009.1;Parent=gene675;Note=CcoO%3B FixO;Dbxref=Genbank:YP_001532009.1,GeneID:5711498;gbkey=CDS;gene=fixO;product=cbb3-type cytochrome c oxidase subunit II;protein_id=YP_001532009.1;transl_table=11
NC_009952.1	RefSeq	gene	667803	668036	.	+	.	ID=gene676;Name=fixQ;Dbxref=GeneID:5711499;gbkey=Gene;gene=fixQ;locus_tag=Dshi_0663
NC_009952.1	RefSeq	CDS	667803	668036	.	+	0	ID=cds659;Name=YP_001532010.1;Parent=gene676;Note=PFAM: Cbb3-type cytochrome oxidase component%3B NCBI conserved domains: fixQ%3B no significant swissprot hit%3B low Ref ZP hit to cytochrome c oxidase%2C cbb3-type%2C subunit IV %5BLoktanella vestfoldensis SKA53%5D.%3B cbb3-type%2C subunit IV;Dbxref=Genbank:YP_001532010.1,GeneID:5711499;gbkey=CDS;gene=fixQ;product=cytochrome c oxidase;protein_id=YP_001532010.1;transl_table=11
NC_009952.1	RefSeq	gene	668033	668896	.	+	.	ID=gene677;Name=fixP;Dbxref=GeneID:5711500;gbkey=Gene;gene=fixP;locus_tag=Dshi_0664
NC_009952.1	RefSeq	CDS	668033	668896	.	+	0	ID=cds660;Name=YP_001532011.1;Parent=gene677;Note=TIGRFAM: cytochrome c oxidase%2C cbb3-type%2C subunit III PFAM: cytochrome c class I%3B NCBI conserved domains: COG2010%2C CccA%2C Cytochrome c%2C mono- and diheme variants%3B high Ref ZP hit to cytochrome c oxidase%2C cbb3-type%2C subunit III %5BJannaschia sp. CCS1%5D.%3B cbb3-type%2C subunit III;Dbxref=Genbank:YP_001532011.1,GeneID:5711500;gbkey=CDS;gene=fixP;product=cytochrome c oxidase;protein_id=YP_001532011.1;transl_table=11
NC_009952.1	RefSeq	gene	669212	670654	.	+	.	ID=gene678;Name=fixG;Dbxref=GeneID:5711501;gbkey=Gene;gene=fixG;locus_tag=Dshi_0665
NC_009952.1	RefSeq	CDS	669212	670654	.	+	0	ID=cds661;Name=YP_001532012.1;Parent=gene678;Note=TIGRFAM: Cytochrome c oxidase cbb3 type accessory protein FixG%3B PFAM00037 4Fe-4S binding domain%3B high swissprot hit to Nitrogen fixation protein fixG from Sinorhizobium meliloti%3B high Ref ZP hit to iron-sulfur-binding protein%2C RdxA%2FRdxB%2FFixG family %5BRoseobacter sp. AzwK-3b%5D.;Dbxref=Genbank:YP_001532012.1,GeneID:5711501;gbkey=CDS;gene=fixG;product=nitrogen fixation protein fixG;protein_id=YP_001532012.1;transl_table=11
NC_009952.1	RefSeq	gene	670651	671118	.	+	.	ID=gene679;Name=fixH;Dbxref=GeneID:5711502;gbkey=Gene;gene=fixH;locus_tag=Dshi_0666
NC_009952.1	RefSeq	CDS	670651	671118	.	+	0	ID=cds662;Name=YP_001532013.1;Parent=gene679;Note=PFAM: FixH family protein%3B NCBI conserved domains: fixH%3B low swissprot hit to Nitrogen fixation protein fixH from Sinorhizobium meliloti%2C middle Ref ZP hit to FixH %5BSilicibacter sp. TM1040%5D.;Dbxref=Genbank:YP_001532013.1,GeneID:5711502;gbkey=CDS;gene=fixH;product=nitrogen fixation protein fixH;protein_id=YP_001532013.1;transl_table=11
NC_009952.1	RefSeq	gene	671120	673309	.	+	.	ID=gene680;Name=fixI;Dbxref=GeneID:5711503;gbkey=Gene;gene=fixI;locus_tag=Dshi_0667
NC_009952.1	RefSeq	CDS	671120	673309	.	+	0	ID=cds663;Name=YP_001532014.1;Parent=gene680;Note=TIGRFAM: ATPase%2C P-type %28transporting%29%2C HAD superfamily%2C subfamily IC%3B copper-translocating P-type ATPase%3B heavy metal translocating P-type ATPase PFAM: Haloacid dehalogenase domain protein hydrolase%3B Heavy metal transport%2Fdetoxification protein%3B E1-E2 ATPase-associated domain protein%3B high swissprot hit to Nitrogen fixation protein fixI from Sinorhizobium meliloti%3B high Ref ZP hit to copper-t%3B E1-E2 type cation ATPase fixI;Dbxref=Genbank:YP_001532014.1,GeneID:5711503;gbkey=CDS;gene=fixI;product=nitrogen fixation protein fixI;protein_id=YP_001532014.1;transl_table=11
NC_009952.1	RefSeq	gene	673314	673472	.	+	.	ID=gene681;Name=fixS;Dbxref=GeneID:5711504;gbkey=Gene;gene=fixS;locus_tag=Dshi_0668
NC_009952.1	RefSeq	CDS	673314	673472	.	+	0	ID=cds664;Name=YP_001532015.1;Parent=gene681;Note=TIGRFAM: cytochrome oxidase maturation protein%2C cbb3-type PFAM: cytochrome oxidase maturation protein cbb3-type%3B NCBI conserved domains: fixS%2C ccoS%3B low swissprot hit to Nitrogen fixation protein fixS from Sinorhizobium meliloti%3B low Ref YP hit to cytochrome oxidase maturation protein%2C cbb3-type %5BRhodobacter sphaeroides ATCC 17025%5D.;Dbxref=Genbank:YP_001532015.1,GeneID:5711504;gbkey=CDS;gene=fixS;product=nitrogen fixation protein fixS;protein_id=YP_001532015.1;transl_table=11
NC_009952.1	RefSeq	gene	673560	675041	.	-	.	ID=gene682;Name=dacC2;Dbxref=GeneID:5711505;gbkey=Gene;gene=dacC2;locus_tag=Dshi_0669
NC_009952.1	RefSeq	CDS	673560	675041	.	-	0	ID=cds665;Name=YP_001532016.1;Parent=gene682;Note=PFAM: beta-lactamase%3B peptidase S11 D-alanyl-D-alanine carboxypeptidase 1%3B NCBI conserved domains: dacC%3B middle swissprot hit to D-alanyl-D-alanine carboxypeptidase dacC precursor from Escherichia coli K12%3B high Ref YP hit to D-alanyl-D-alanine carboxypeptidase family protein %5BRoseobacter denitrificans OCh 114%5D.;Dbxref=Genbank:YP_001532016.1,GeneID:5711505;gbkey=CDS;gene=dacC2;product=D-alanyl-D-alanine carboxypeptidase;protein_id=YP_001532016.1;transl_table=11
NC_009952.1	RefSeq	gene	675215	675919	.	-	.	ID=gene683;Name=Dshi_0670;Dbxref=GeneID:5711506;gbkey=Gene;locus_tag=Dshi_0670
NC_009952.1	RefSeq	CDS	675215	675919	.	-	0	ID=cds666;Name=YP_001532017.1;Parent=gene683;Note=ibu%3B PFAM: Haloacid dehalogenase domain protein hydrolase%3B NCBI conserved domains: COG1011%2C Predicted hydrolase %28HAD superfamily%29%3B bad swissprot hit to Uncharacterized HAD-hydrolase MTH_209 from Methanothermobacter thermautotrophicus str. Delta H%3B high Ref YP hit to Haloacid dehalogenase domain protein hydrolase %5BRhodobacter sphaeroides ATCC 17025%5D.;Dbxref=Genbank:YP_001532017.1,GeneID:5711506;gbkey=CDS;product=haloacid dehalogenase domain-containing protein hydrolase;protein_id=YP_001532017.1;transl_table=11
NC_009952.1	RefSeq	gene	676410	677411	.	+	.	ID=gene684;Name=rsmC;Dbxref=GeneID:5711507;gbkey=Gene;gene=rsmC;locus_tag=Dshi_0671
NC_009952.1	RefSeq	CDS	676410	677411	.	+	0	ID=cds667;Name=YP_001532018.1;Parent=gene684;Note=PFAM: methyltransferase small%3B Methyltransferase type 11%3B Methyltransferase type 12%3B NCBI conserved domains: rsmC%3B low swissprot hit to Ribosomal RNA small subunit methyltransferase C from Escherichia coli K12%3B high Ref ZP hit to Possible ribosomal RNA small subunit methyltransferase C RsmC from Roseobacter sp. CCS2;Dbxref=Genbank:YP_001532018.1,GeneID:5711507;gbkey=CDS;gene=rsmC;product=ribosomal RNA small subunit methyltransferase C;protein_id=YP_001532018.1;transl_table=11
NC_009952.1	RefSeq	gene	677442	678248	.	+	.	ID=gene685;Name=Dshi_0672;Dbxref=GeneID:5711508;gbkey=Gene;locus_tag=Dshi_0672
NC_009952.1	RefSeq	CDS	677442	678248	.	+	0	ID=cds668;Name=YP_001532019.1;Parent=gene685;Note=PFAM: short-chain dehydrogenase%2Freductase SDR%3B KR domain protein%3B low swissprot hit to 7-alpha-hydroxysteroid dehydrogenase from Escherichia coli K12%3B high Ref ZP hit to 7-alpha-hydroxysteroid dehydrogenase%2C putative %5BRoseovarius nubinhibens ISM%5D.;Dbxref=Genbank:YP_001532019.1,GeneID:5711508;gbkey=CDS;product=short-chain dehydrogenase%2Freductase SDR;protein_id=YP_001532019.1;transl_table=11
NC_009952.1	RefSeq	gene	678229	678606	.	-	.	ID=gene686;Name=Dshi_0673;Dbxref=GeneID:5711509;gbkey=Gene;locus_tag=Dshi_0673
NC_009952.1	RefSeq	CDS	678229	678606	.	-	0	ID=cds669;Name=YP_001532020.1;Parent=gene686;Note=no significant swissprot%2C no conserved domains%3B bad Ref ZP hit to hypothetical protein RTM1035_19081 %5BRoseovarius sp. TM1035%5D.;Dbxref=Genbank:YP_001532020.1,GeneID:5711509;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532020.1;transl_table=11
NC_009952.1	RefSeq	gene	678666	679559	.	+	.	ID=gene687;Name=hemF;Dbxref=GeneID:5711510;gbkey=Gene;gene=hemF;locus_tag=Dshi_0674
NC_009952.1	RefSeq	CDS	678666	679559	.	+	0	ID=cds670;Name=YP_001532021.1;Parent=gene687;Note=catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis;Dbxref=Genbank:YP_001532021.1,GeneID:5711510;gbkey=CDS;gene=hemF;product=coproporphyrinogen III oxidase;protein_id=YP_001532021.1;transl_table=11
NC_009952.1	RefSeq	gene	679714	681504	.	+	.	ID=gene688;Name=ggt2;Dbxref=GeneID:5711511;gbkey=Gene;gene=ggt2;locus_tag=Dshi_0675
NC_009952.1	RefSeq	CDS	679714	681504	.	+	0	ID=cds671;Name=YP_001532022.1;Parent=gene688;Note=TIGRFAM: gamma-glutamyltransferase PFAM: gamma-glutamyltranspeptidase%3B NCBI conserved domains: ggT%3B high swissprot hit to Gamma-glutamyltranspeptidase precursor from Escherichia coli K12%3B high Ref YP hit to Gamma-glutamyltransferase %5BJannaschia sp. CCS1%5D.;Dbxref=Genbank:YP_001532022.1,GeneID:5711511;gbkey=CDS;gene=ggt2;product=gamma-glutamyltransferase;protein_id=YP_001532022.1;transl_table=11
NC_009952.1	RefSeq	gene	681643	683742	.	+	.	ID=gene689;Name=Dshi_0676;Dbxref=GeneID:5711512;gbkey=Gene;locus_tag=Dshi_0676
NC_009952.1	RefSeq	CDS	681643	683742	.	+	0	ID=cds672;Name=YP_001532023.1;Parent=gene689;Note=PFAM: beta-lactamase%3B NCBI conserved domains: COG1680%2C AmpC%2C Beta-lactamase class C and other penicillin binding proteins%3B bad swissprot hit to Penicillin-binding protein 4%2A %28PBP 4%2A%29 from Bacillus subtilis%3B bad Ref YP hit to beta-lactamase %5BChloroflexus aurantiacus J-10-fl%5D;Dbxref=Genbank:YP_001532023.1,GeneID:5711512;gbkey=CDS;product=beta-lactamase;protein_id=YP_001532023.1;transl_table=11
NC_009952.1	RefSeq	gene	683755	684570	.	-	.	ID=gene690;Name=Dshi_0677;Dbxref=GeneID:5711513;gbkey=Gene;locus_tag=Dshi_0677
NC_009952.1	RefSeq	CDS	683755	684570	.	-	0	ID=cds673;Name=YP_001532024.1;Parent=gene690;Note=Pfam03567 Sulfotransferase%3B NCBI conserved domains: pfam03567%3B bad swissprot hit to Carbohydrate sulfotransferase 9 from Mus musculus%3B high Ref ZP hit to hypothetical protein R2601_13619 %5BRoseovarius sp. HTCC2601%5D.;Dbxref=Genbank:YP_001532024.1,GeneID:5711513;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532024.1;transl_table=11
NC_009952.1	RefSeq	gene	684684	686261	.	+	.	ID=gene691;Name=Dshi_0678;Dbxref=GeneID:5711514;gbkey=Gene;locus_tag=Dshi_0678
NC_009952.1	RefSeq	CDS	684684	686261	.	+	0	ID=cds674;Name=YP_001532025.1;Parent=gene691;Note=PFAM: glycosyl transferase family 14%3B NCBI conserved domains: pfam02485%2C Branch%2C Core-2%2FI-Branching enzyme%2C pfam03267%2C DUF266%2C Domain of unknown function%2C bad swissprot hit to Xylosyltransferase from Ciona intestinalis%3B high Ref YP hit to epsK domain protein %5BSilicibacter pomeroyi DSS-3%5D.;Dbxref=Genbank:YP_001532025.1,GeneID:5711514;gbkey=CDS;product=glycosyl transferase family protein;protein_id=YP_001532025.1;transl_table=11
NC_009952.1	RefSeq	gene	686270	686641	.	+	.	ID=gene692;Name=Dshi_0679;Dbxref=GeneID:5711515;gbkey=Gene;locus_tag=Dshi_0679
NC_009952.1	RefSeq	CDS	686270	686641	.	+	0	ID=cds675;Name=YP_001532026.1;Parent=gene692;Note=PFAM: histidine triad %28HIT%29 protein%3B NCBI conserved domains: cd01276%2C PKCI_related%2C Protein Kinase C Interacting protein related %28PKCI%29%2C COG0537%2C Hit%2C Diadenosine tetraphosphate %28Ap4A%29 hydrolase and other HIT family hydrolases%3B middle swissprot hit to Uncharacterized 13.2 kDa HIT-like protein in hisE 3region from Azospirillum brasilense%3B good Ref ZP hit to HIT-like protein%2C putative %5BRoseobacter sp. AzwK-3b%5D.;Dbxref=Genbank:YP_001532026.1,GeneID:5711515;gbkey=CDS;product=histidine triad %28HIT%29 protein;protein_id=YP_001532026.1;transl_table=11
NC_009952.1	RefSeq	gene	686761	687834	.	-	.	ID=gene693;Name=purK;Dbxref=GeneID:5711516;gbkey=Gene;gene=purK;locus_tag=Dshi_0680
NC_009952.1	RefSeq	CDS	686761	687834	.	-	0	ID=cds676;Name=YP_001532027.1;Parent=gene693;Note=With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway;Dbxref=Genbank:YP_001532027.1,GeneID:5711516;gbkey=CDS;gene=purK;product=phosphoribosylaminoimidazole carboxylase ATPase subunit;protein_id=YP_001532027.1;transl_table=11
NC_009952.1	RefSeq	gene	687827	688312	.	-	.	ID=gene694;Name=purE;Dbxref=GeneID:5711517;gbkey=Gene;gene=purE;locus_tag=Dshi_0681
NC_009952.1	RefSeq	CDS	687827	688312	.	-	0	ID=cds677;Name=YP_001532028.1;Parent=gene694;Note=TIGRFAM: phosphoribosylaminoimidazole carboxylase%2C catalytic subunit PFAM: 1-%285-phosphoribosyl%29-5-amino-4-imidazole-carboxylate %28AIR%29 carboxylase%3B NCBI conserved domains: purE%3B middle swissprot hit to Phosphoribosylaminoimidazole carboxylase catalytic subunit from Bacillus subtilis%3B high Ref YP hit to Phosphoribosylaminoimidazole carboxylase%2C catalytic subunit from Rhodobacter sphaeroides 2.4.1%3B catalytic subunit;Dbxref=Genbank:YP_001532028.1,GeneID:5711517;gbkey=CDS;gene=purE;product=phosphoribosylaminoimidazole carboxylase;protein_id=YP_001532028.1;transl_table=11
NC_009952.1	RefSeq	gene	688389	688613	.	-	.	ID=gene695;Name=Dshi_0682;Dbxref=GeneID:5711518;gbkey=Gene;locus_tag=Dshi_0682
NC_009952.1	RefSeq	CDS	688389	688613	.	-	0	ID=cds678;Name=YP_001532029.1;Parent=gene695;Note=PFAM: protein of unknown function DUF465%3B no significant swissprot%3B low Ref ZP hit to Protein of unknown function DUF465 %5BParacoccus denitrificans PD1222%5D.;Dbxref=Genbank:YP_001532029.1,GeneID:5711518;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532029.1;transl_table=11
NC_009952.1	RefSeq	gene	688790	689233	.	+	.	ID=gene696;Name=ibpAB;Dbxref=GeneID:5711118;gbkey=Gene;gene=ibpAB;locus_tag=Dshi_0683
NC_009952.1	RefSeq	CDS	688790	689233	.	+	0	ID=cds679;Name=YP_001532030.1;Parent=gene696;Note=PFAM: heat shock protein Hsp20%3B NCBI conserved domains: ibpA%3B low swissprot hit to Small heat shock protein ibpA from Salmonella choleraesuis%3B good Ref YP hit to heat shock protein Hsp20 %5BJannaschia sp. CCS1%5D.;Dbxref=Genbank:YP_001532030.1,GeneID:5711118;gbkey=CDS;gene=ibpAB;product=heat shock protein;protein_id=YP_001532030.1;transl_table=11
NC_009952.1	RefSeq	gene	689230	689457	.	+	.	ID=gene697;Name=ibpAB;Dbxref=GeneID:5711119;gbkey=Gene;gene=ibpAB;locus_tag=Dshi_0684
NC_009952.1	RefSeq	CDS	689230	689457	.	+	0	ID=cds680;Name=YP_001532031.1;Parent=gene697;Note=NCBI conserved domains: pfam06620 DUF1150%2C Protein of unknown function%2C COG5568%2C Uncharacterized small protein%3B no significant swissprot%3B low Ref ZP hit to hypothetical protein OB2597_07215 %5BOceanicola batsensis HTCC2597%5D.;Dbxref=Genbank:YP_001532031.1,GeneID:5711119;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532031.1;transl_table=11
NC_009952.1	RefSeq	gene	689465	690361	.	-	.	ID=gene698;Name=apbE2;Dbxref=GeneID:5711120;gbkey=Gene;gene=apbE2;locus_tag=Dshi_0685
NC_009952.1	RefSeq	CDS	689465	690361	.	-	0	ID=cds681;Name=YP_001532032.1;Parent=gene698;Note=PFAM: ApbE family lipoprotein KEGG: pde:Pden_2485 ApbE family lipoprotein;Dbxref=Genbank:YP_001532032.1,GeneID:5711120;gbkey=CDS;gene=apbE2;product=ApbE family lipoprotein;protein_id=YP_001532032.1;transl_table=11
NC_009952.1	RefSeq	gene	690358	692448	.	-	.	ID=gene699;Name=nosR1;Dbxref=GeneID:5711121;gbkey=Gene;gene=nosR1;locus_tag=Dshi_0686
NC_009952.1	RefSeq	CDS	690358	692448	.	-	0	ID=cds682;Name=YP_001532033.1;Parent=gene699;Note=InterPro Scan: PIRSF036354 nitrous oxide reductase expression regulator NosR%3B NCBI conserved domains: nosR%3B high swissprot hit to Regulatory protein nosR from Pseudomonas stutzeri%3B high Ref ZP hit to regulatory protein%2C putative %5BSagittula stellata E-37%5D.;Dbxref=Genbank:YP_001532033.1,GeneID:5711121;gbkey=CDS;gene=nosR1;product=regulator of nitric oxide reductase transcription;protein_id=YP_001532033.1;transl_table=11
NC_009952.1	RefSeq	gene	692556	693332	.	+	.	ID=gene700;Name=Dshi_0687;Dbxref=GeneID:5711122;gbkey=Gene;locus_tag=Dshi_0687
NC_009952.1	RefSeq	CDS	692556	693332	.	+	0	ID=cds683;Name=YP_001532034.1;Parent=gene700;Note=PFAM: binding-protein-dependent transport systems inner membrane component%3B NCBI conserved domains: COG0600%2C TauC%2C ABC-type nitrate%2Fsulfonate%2Fbicarbonate transport system%2C permease component%3B low swissprot hit to Putative aliphatic sulfonates transport permease protein ssuC from Bacillus subtilis%3B high Ref ZP hit to putative ABC transporter protein %5BSagittula stellata E-37%5D%3B other two ABC-transporter components %28ATP-binding%2C substrate-binding%29 are missing;Dbxref=Genbank:YP_001532034.1,GeneID:5711122;gbkey=CDS;product=two-component system%2C permease;protein_id=YP_001532034.1;transl_table=11
NC_009952.1	RefSeq	gene	693474	694838	.	-	.	ID=gene701;Name=Dshi_0688;Dbxref=GeneID:5711123;gbkey=Gene;locus_tag=Dshi_0688
NC_009952.1	RefSeq	CDS	693474	694838	.	-	0	ID=cds684;Name=YP_001532035.1;Parent=gene701;Note=PFAM: fumarate reductase%2Fsuccinate dehydrogenase flavoprotein domain protein%3B FAD dependent oxidoreductase%3B FAD-dependent pyridine nucleotide-disulphide oxidoreductase%3B NCBI conserved domains: PRK06481%2C fumarate reductase flavoprotein subunit%2C COG1053%2C SdhA%2C Succinate dehydrogenase%2Ffumarate reductase%2C flavoprotein subunit%3B middle swissprot hit to Fumarate reductase flavoprotein subunit precursor from Shewanella oneidensis%3B high Ref YP hit to fumarate reductase%2Fsuccinate dehydrogenase flavoprotein-like from Jannaschia sp. CCS1;Dbxref=Genbank:YP_001532035.1,GeneID:5711123;gbkey=CDS;product=fumarate reductase%2Fsuccinate dehydrogenase flavoprotein domain-containing protein;protein_id=YP_001532035.1;transl_table=11
NC_009952.1	RefSeq	gene	694835	695713	.	-	.	ID=gene702;Name=prpB;Dbxref=GeneID:5711124;gbkey=Gene;gene=prpB;locus_tag=Dshi_0689
NC_009952.1	RefSeq	CDS	694835	695713	.	-	0	ID=cds685;Name=YP_001532036.1;Parent=gene702;Note=NCBI conserved domains: COG2513%2C PrpB%2C PEP phosphonomutase and related enzymes%3B PRK11320%2C prpB%2C 2-methylisocitrate lyase%3B middle swissprot hit to Methylisocitrate lyase from Vibrio cholerae%3B high Ref YP hit to isocitrate lyase family protein %5BJannaschia sp. CCS1%5D.;Dbxref=Genbank:YP_001532036.1,GeneID:5711124;gbkey=CDS;gene=prpB;product=methylisocitrate lyase;protein_id=YP_001532036.1;transl_table=11
NC_009952.1	RefSeq	gene	695710	696312	.	-	.	ID=gene703;Name=entB;Dbxref=GeneID:5711125;gbkey=Gene;gene=entB;locus_tag=Dshi_0690
NC_009952.1	RefSeq	CDS	695710	696312	.	-	0	ID=cds686;Name=YP_001532037.1;Parent=gene703;Note=PFAM: isochorismatase hydrolase%3B NCBI conserved domains: COG1535%2C EntB%2C Isochorismate hydrolase%3B low swissprot hit to Isochorismatase %28Isochorismate lyase%29 from Escherichia coli K12%3B high Ref ZP hit to isochorismatase family protein %5BSulfitobacter sp. EE-36%5D.;Dbxref=Genbank:YP_001532037.1,GeneID:5711125;gbkey=CDS;gene=entB;product=isochorismatase;protein_id=YP_001532037.1;transl_table=11
NC_009952.1	RefSeq	gene	696309	698378	.	-	.	ID=gene704;Name=hyuA;Dbxref=GeneID:5711126;gbkey=Gene;gene=hyuA;locus_tag=Dshi_0691
NC_009952.1	RefSeq	CDS	696309	698378	.	-	0	ID=cds687;Name=YP_001532038.1;Parent=gene704;Note=PFAM: Hydantoinase%2Foxoprolinase%3B Hydantoinaseoxoprolinase domain protein%3B NCBI conserved domains: COG0145%2C HyuA%2C N-methylhydantoinase A%2Facetone carboxylase%2C beta subunit%3B high swissprot hit to Hydantoin utilization protein A from Pseudomonas sp. NS671%3B high Ref ZP hit to hydantoin utilization protein A %5BRoseovarius sp. HTCC2601%5D.;Dbxref=Genbank:YP_001532038.1,GeneID:5711126;gbkey=CDS;gene=hyuA;product=hydantoin utilization protein A;protein_id=YP_001532038.1;transl_table=11
NC_009952.1	RefSeq	gene	698375	700072	.	-	.	ID=gene705;Name=hyuB;Dbxref=GeneID:5711127;gbkey=Gene;gene=hyuB;locus_tag=Dshi_0692
NC_009952.1	RefSeq	CDS	698375	700072	.	-	0	ID=cds688;Name=YP_001532039.1;Parent=gene705;Note=PFAM: Hydantoinase B%2Foxoprolinase%2C NCBI conserved domains: COG0146%2C HyuB%2C N-methylhydantoinase B%2Facetone carboxylase%2C alpha subunit%3B good swissprot hit to Hydantoin utilization protein B from Pseudomonas sp. NS671%3B high Ref ZP hit to hydantoin utilization protein B%2C putative %5BRoseovarius sp. HTCC2601%5D.;Dbxref=Genbank:YP_001532039.1,GeneID:5711127;gbkey=CDS;gene=hyuB;product=hydantoin utilization protein B;protein_id=YP_001532039.1;transl_table=11
NC_009952.1	RefSeq	gene	700069	700644	.	-	.	ID=gene706;Name=pptA;Dbxref=GeneID:5711128;gbkey=Gene;gene=pptA;locus_tag=Dshi_0693
NC_009952.1	RefSeq	CDS	700069	700644	.	-	0	ID=cds689;Name=YP_001532040.1;Parent=gene706;Note=PFAM: 4-oxalocrotonate tautomerase%3B NCBI conserved domains: pfam01361%2C Tautomerase%3B no significant swissprot%2C good Ref ZP hit to tautomerase%2C putative %5BLoktanella vestfoldensis SKA53%5D.;Dbxref=Genbank:YP_001532040.1,GeneID:5711128;gbkey=CDS;gene=pptA;product=4-oxalocrotonate tautomerase;protein_id=YP_001532040.1;transl_table=11
NC_009952.1	RefSeq	gene	700802	701602	.	+	.	ID=gene707;Name=Dshi_0694;Dbxref=GeneID:5711129;gbkey=Gene;locus_tag=Dshi_0694
NC_009952.1	RefSeq	CDS	700802	701602	.	+	0	ID=cds690;Name=YP_001532041.1;Parent=gene707;Note=PFAM: regulatory protein GntR HTH%3B UbiC transcription regulator-associated domain protein%3B NCBI conserved domains: pfam07702%2C UTRA%3B low swissprot hit to Uncharacterized HTH-type transcriptional regulator yidP from Escherichia coli K12%3B high Ref YP hit to transcriptional regulator%2C GntR family %5BJannaschia sp. CCS1%5D.%3B GntR family;Dbxref=Genbank:YP_001532041.1,GeneID:5711129;gbkey=CDS;product=transcriptional regulator;protein_id=YP_001532041.1;transl_table=11
NC_009952.1	RefSeq	gene	701599	702993	.	+	.	ID=gene708;Name=leuC;Dbxref=GeneID:5711130;gbkey=Gene;gene=leuC;locus_tag=Dshi_0695
NC_009952.1	RefSeq	CDS	701599	702993	.	+	0	ID=cds691;Name=YP_001532042.1;Parent=gene708;Note=dehydratase component%2C catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate;Dbxref=Genbank:YP_001532042.1,GeneID:5711130;gbkey=CDS;gene=leuC;product=isopropylmalate isomerase large subunit;protein_id=YP_001532042.1;transl_table=11
NC_009952.1	RefSeq	gene	702990	703649	.	+	.	ID=gene709;Name=leuD;Dbxref=GeneID:5711131;gbkey=Gene;gene=leuD;locus_tag=Dshi_0696
NC_009952.1	RefSeq	CDS	702990	703649	.	+	0	ID=cds692;Name=YP_001532043.1;Parent=gene709;Note=TIGRFAM: 3-isopropylmalate dehydratase%2C small subunit PFAM: aconitate hydratase domain protein%3B NCBI conserved domains: PRK01641%2C leuD%2C isopropylmalate isomerase small subunit%3B good swissprot hit to 3-isopropylmalate dehydratase small subunit from Symbiobacterium thermophilum%3B good Ref ZP hit to 3-isopropylmalate dehydratase%2C small subunit %5BSulfitobacter sp. NAS-14.1%5D.;Dbxref=Genbank:YP_001532043.1,GeneID:5711131;gbkey=CDS;gene=leuD;product=3-isopropylmalate dehydratase small subunit;protein_id=YP_001532043.1;transl_table=11
NC_009952.1	RefSeq	gene	703665	704675	.	+	.	ID=gene710;Name=dctP1;Dbxref=GeneID:5711132;gbkey=Gene;gene=dctP1;locus_tag=Dshi_0697
NC_009952.1	RefSeq	CDS	703665	704675	.	+	0	ID=cds693;Name=YP_001532044.1;Parent=gene710;Note=PFAM: TRAP dicarboxylate transporter- DctP subunit%2C NCBI conserved domains: COG1638%2C DctP%3B bad swissprot hit to C4-dicarboxylate-binding periplasmic protein precursor from Rhodobacter capsulatus%3B high Ref ZP hit to TRAP dicarboxylate transporter- DctP subunit %5BHoeflea phototrophica DFL-43%5D.;Dbxref=Genbank:YP_001532044.1,GeneID:5711132;gbkey=CDS;gene=dctP1;product=TRAP dicarboxylate transporter subunit DctP;protein_id=YP_001532044.1;transl_table=11
NC_009952.1	RefSeq	gene	704719	705225	.	+	.	ID=gene711;Name=dctQ3;Dbxref=GeneID:5711133;gbkey=Gene;gene=dctQ3;locus_tag=Dshi_0698
NC_009952.1	RefSeq	CDS	704719	705225	.	+	0	ID=cds694;Name=YP_001532045.1;Parent=gene711;Note=PFAM: Tripartite ATP-independent periplasmic transporter DctQ component%2C NCBI conserved domains: dctQ and dctM small permease component%3B no significant swissprot%3B good Ref ZP hit to TRAP dicarboxylate transporter%2C DctQ subunit%2C putative from Sulfitobacter sp. EE-36;Dbxref=Genbank:YP_001532045.1,GeneID:5711133;gbkey=CDS;gene=dctQ3;product=TRAP dicarboxylate transporter subunit DctQ;protein_id=YP_001532045.1;transl_table=11
NC_009952.1	RefSeq	gene	705226	706539	.	+	.	ID=gene712;Name=dctM1;Dbxref=GeneID:5711134;gbkey=Gene;gene=dctM1;locus_tag=Dshi_0699
NC_009952.1	RefSeq	CDS	705226	706539	.	+	0	ID=cds695;Name=YP_001532046.1;Parent=gene712;Note=PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit%3B NCBI conserved domains: COG4664%2C FcbT3%2C TRAP-type mannitol%2Fchloroaromatic compound transport system%2C large permease component and dctMQ%3B middle swissprot hit to Putative TRAP transporter large permease protein HI0050 from Haemophilus influenzae%3B high Ref ZP hit to TRAP dicarboxylate transporter%2C DctM subunit %5BLoktanella vestfoldensis SKA53%5D.;Dbxref=Genbank:YP_001532046.1,GeneID:5711134;gbkey=CDS;gene=dctM1;product=TRAP dicarboxylate transporter subunit DctM;protein_id=YP_001532046.1;transl_table=11
NC_009952.1	RefSeq	gene	706599	708116	.	+	.	ID=gene713;Name=Dshi_0700;Dbxref=GeneID:5711135;gbkey=Gene;locus_tag=Dshi_0700
NC_009952.1	RefSeq	CDS	706599	708116	.	+	0	ID=cds696;Name=YP_001532047.1;Parent=gene713;Note=PFAM: AMP-dependent synthetase and ligase%3B NCBI conserved domains: COG0318%2C CaiC%2C Acyl-CoA synthetases %28AMP-forming%29%3B middle swissprot hit to 2-succinylbenzoate--CoA ligase %28OSB-CoA synthetase%29 from Bacillus anthracis%3B high Ref ZP hit to AMP-binding enzyme %5BRhodobacterales bacterium HTCC2654%5D.;Dbxref=Genbank:YP_001532047.1,GeneID:5711135;gbkey=CDS;product=AMP-dependent synthetase and ligase;protein_id=YP_001532047.1;transl_table=11
NC_009952.1	RefSeq	gene	708169	708822	.	-	.	ID=gene714;Name=Dshi_0701;Dbxref=GeneID:5711136;gbkey=Gene;locus_tag=Dshi_0701
NC_009952.1	RefSeq	CDS	708169	708822	.	-	0	ID=cds697;Name=YP_001532048.1;Parent=gene714;Note=PFAM: Methyltransferase type 11%3B Methyltransferase type 12%3B NCBI conserved domains: COG2226%2C UbiE%3B no significant swissprot%3B middle Ref YP hit to Methyltransferase type 12 %5BFlavobacterium johnsoniae UW101%5D;Dbxref=Genbank:YP_001532048.1,GeneID:5711136;gbkey=CDS;product=methyltransferase domain-containing protein;protein_id=YP_001532048.1;transl_table=11
NC_009952.1	RefSeq	gene	708819	709466	.	-	.	ID=gene715;Name=Dshi_0702;Dbxref=GeneID:5711137;gbkey=Gene;locus_tag=Dshi_0702
NC_009952.1	RefSeq	CDS	708819	709466	.	-	0	ID=cds698;Name=YP_001532049.1;Parent=gene715;Note=InterPro Scan and NCBI conserved domains: pfam08889%2C WbqC%3B no significant swissprot%3B low gb hit to WbnG %5BShigella dysenteriae%5D.;Dbxref=Genbank:YP_001532049.1,GeneID:5711137;gbkey=CDS;product=WbqC-like family protein;protein_id=YP_001532049.1;transl_table=11
NC_009952.1	RefSeq	gene	709466	710386	.	-	.	ID=gene716;Name=Dshi_0703;Dbxref=GeneID:5711138;gbkey=Gene;locus_tag=Dshi_0703
NC_009952.1	RefSeq	CDS	709466	710386	.	-	0	ID=cds699;Name=YP_001532050.1;Parent=gene716;Note=NCBI conserved domains: pfam00535%2C Glycos_transf_2%2C Glycosyl transferase family 2%3B no significant swissprot%3B low Ref YP hit to hypothetical protein Rsph17025_3846 %5BRhodobacter sphaeroides ATCC 17025%5D.;Dbxref=Genbank:YP_001532050.1,GeneID:5711138;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532050.1;transl_table=11
NC_009952.1	RefSeq	gene	710642	711829	.	+	.	ID=gene717;Name=Dshi_0704;Dbxref=GeneID:5711139;gbkey=Gene;locus_tag=Dshi_0704
NC_009952.1	RefSeq	CDS	710642	711829	.	+	0	ID=cds700;Name=YP_001532051.1;Parent=gene717;Note=PFAM: DegT%2FDnrJ%2FEryC1%2FStrS aminotransferase%3B aminotransferase class-III%3B NCBI conserved domains: pfam01041%2C DegT_DnrJ_EryC1%2C DegT%2FDnrJ%2FEryC1%2FStrS aminotransferase family%3B COG0399%2C WecE%2C Predicted pyridoxal phosphate-dependent enzyme%3B low swissprot hit to UDP-Ara4O aminotransferase from Salmonella typhi%3B middle Ref YP hit to DegT%2FDnrJ%2FEryC1%2FStrS aminotransferase %5BMethylobacillus flagellatus KT%5D;Dbxref=Genbank:YP_001532051.1,GeneID:5711139;gbkey=CDS;product=pyridoxal-phosphate-dependent aminotransferase;protein_id=YP_001532051.1;transl_table=11
NC_009952.1	RefSeq	gene	711826	713256	.	+	.	ID=gene718;Name=Dshi_0705;Dbxref=GeneID:5711140;gbkey=Gene;locus_tag=Dshi_0705
NC_009952.1	RefSeq	CDS	711826	713256	.	+	0	ID=cds701;Name=YP_001532052.1;Parent=gene718;Note=NCBI conserved domains: COG4421%2C Capsular polysaccharide biosynthesis protein%3B no significant swissprot%3B low Ref ZP hit to Capsular polysaccharide biosynthesis protein-like protein from Roseobacter sp. AzwK-3b;Dbxref=Genbank:YP_001532052.1,GeneID:5711140;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532052.1;transl_table=11
NC_009952.1	RefSeq	gene	714601	715269	.	+	.	ID=gene719;Name=Dshi_0707;Dbxref=GeneID:5711142;gbkey=Gene;locus_tag=Dshi_0707
NC_009952.1	RefSeq	CDS	714601	715269	.	+	0	ID=cds702;Name=YP_001532053.1;Parent=gene719;Note=NCBI conserved domains: cd00208%2C LbetaH%2C Left-Handed Parallel beta-Helix and COG1044%2C LpxD%2C UDP-3-O-%5B3-hydroxymyristoyl%5D%3B low swissprot hit to UDP-3-O-%5B3-hydroxymyristoyl%5D glucosamine N-acyltransferase from Nitrosococcus oceani ATCC 19707%3B middle Ref ZP hit to transferase hexapeptide repeat %5BPseudomonas putida W619%5D;Dbxref=Genbank:YP_001532053.1,GeneID:5711142;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532053.1;transl_table=11
NC_009952.1	RefSeq	gene	715275	716246	.	+	.	ID=gene720;Name=Dshi_0708;Dbxref=GeneID:5711143;gbkey=Gene;locus_tag=Dshi_0708
NC_009952.1	RefSeq	CDS	715275	716246	.	+	0	ID=cds703;Name=YP_001532054.1;Parent=gene720;Note=unsure GC frame Plot%2C no conserved domains%3B no significant swissprot%3B middle Ref YP hit to hypothetical protein BTH_I3215 %5BBurkholderia thailandensis E264%5D.;Dbxref=Genbank:YP_001532054.1,GeneID:5711143;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532054.1;transl_table=11
NC_009952.1	RefSeq	gene	716718	718664	.	+	.	ID=gene721;Name=atoDA;Dbxref=GeneID:5711144;gbkey=Gene;gene=atoDA;locus_tag=Dshi_0709
NC_009952.1	RefSeq	CDS	716718	718664	.	+	0	ID=cds704;Name=YP_001532055.1;Parent=gene721;Note=PFAM: coenzyme A transferase%3B NCBI conserved domains: atoDA%3B low swissprot hit to SCOT-S from Sus scrofa%3B high Ref ZP hit to Coenzyme A transferase %5BRoseobacter litoralis Och 149%5D.;Dbxref=Genbank:YP_001532055.1,GeneID:5711144;gbkey=CDS;gene=atoDA;product=acyl CoA:acetate%2F3-ketoacid CoA transferase%2C alpha and subunit beta;protein_id=YP_001532055.1;transl_table=11
NC_009952.1	RefSeq	gene	718730	719377	.	+	.	ID=gene722;Name=Dshi_0710;Dbxref=GeneID:5711145;gbkey=Gene;locus_tag=Dshi_0710
NC_009952.1	RefSeq	CDS	718730	719377	.	+	0	ID=cds705;Name=YP_001532056.1;Parent=gene722;Note=no significant swissprot%3B no conserved domains detected %28except from one signalpep. and six transmembr. regions%29%3B middle Ref ZP hit to hypothetical protein RLO149_12985 %5BRoseobacter litoralis Och 149%5D.;Dbxref=Genbank:YP_001532056.1,GeneID:5711145;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532056.1;transl_table=11
NC_009952.1	RefSeq	gene	719323	720249	.	-	.	ID=gene723;Name=Dshi_0711;Dbxref=GeneID:5711146;gbkey=Gene;locus_tag=Dshi_0711
NC_009952.1	RefSeq	CDS	719323	720249	.	-	0	ID=cds706;Name=YP_001532057.1;Parent=gene723;Note=specific inhibitor of chromosomal initiation of replication in vitro%3B binds the three 13-mers in the origin %28oriC%29 to block initiation of replication%3B also controls genes involved in arginine transport;Dbxref=Genbank:YP_001532057.1,GeneID:5711146;gbkey=CDS;product=chromosome replication initiation inhibitor protein;protein_id=YP_001532057.1;transl_table=11
NC_009952.1	RefSeq	gene	720340	720966	.	+	.	ID=gene724;Name=lysE;Dbxref=GeneID:5711147;gbkey=Gene;gene=lysE;locus_tag=Dshi_0712
NC_009952.1	RefSeq	CDS	720340	720966	.	+	0	ID=cds707;Name=YP_001532058.1;Parent=gene724;Note=NCBI conserved domains: COG1279%2C Lysine efflux permease%3B pfam01810%2C LysE%3B middle swissprot hit to Putative amino-acid transporter yggA from Aeromonas salmonicida%3B good Ref ZP hit to L-lysine exporter%2C putative %5BOceanibulbus indolifex HEL-45%5D.%3B LYSE%2FYGGA;Dbxref=Genbank:YP_001532058.1,GeneID:5711147;gbkey=CDS;gene=lysE;product=lysine exporter protein;protein_id=YP_001532058.1;transl_table=11
NC_009952.1	RefSeq	gene	721072	721935	.	+	.	ID=gene725;Name=Dshi_0713;Dbxref=GeneID:5711148;gbkey=Gene;locus_tag=Dshi_0713
NC_009952.1	RefSeq	CDS	721072	721935	.	+	0	ID=cds708;Name=YP_001532059.1;Parent=gene725;Note=NCBI conserved domains: COG3509%2C LpqC%3B no significant swissprot%3B low REf YP hit to polyhydroxybutyrate depolymerase %5BFrankia sp. EAN1pec%5D.;Dbxref=Genbank:YP_001532059.1,GeneID:5711148;gbkey=CDS;product=poly%283-hydroxybutyrate%29 depolymerase-like protein;protein_id=YP_001532059.1;transl_table=11
NC_009952.1	RefSeq	gene	721916	722884	.	+	.	ID=gene726;Name=Dshi_0714;Dbxref=GeneID:5711149;gbkey=Gene;locus_tag=Dshi_0714
NC_009952.1	RefSeq	CDS	721916	722884	.	+	0	ID=cds709;Name=YP_001532060.1;Parent=gene726;Note=NCBI conserved domains: pfam00892%2C DUF6%2C Integral membrane protein DUF6%3B COG0697%2C RhaT%2C Permeases of the drug%2Fmetabolite transporter %28DMT%29 superfamily%3B low swissprot hit to S-adenosylmethionine uptake transporter from Rickettsia typhi%3B high Ref ZP hit to membrane protein%2C putative %5BRoseobacter sp. MED193%5D.;Dbxref=Genbank:YP_001532060.1,GeneID:5711149;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532060.1;transl_table=11
NC_009952.1	RefSeq	gene	722969	723211	.	+	.	ID=gene727;Name=Dshi_0715;Dbxref=GeneID:5711150;gbkey=Gene;locus_tag=Dshi_0715
NC_009952.1	RefSeq	CDS	722969	723211	.	+	0	ID=cds710;Name=YP_001532061.1;Parent=gene727;Note=PFAM04325 Protein of unknown function %28DUF465%29%3B NCBI conserved domains: COG2841%2C Uncharacterized protein conserved in bacteria%3B no swissprot hit%3B low Ref YP hit to protein of unknown function DUF465 %5BSilicibacter sp. TM1040%5D.;Dbxref=Genbank:YP_001532061.1,GeneID:5711150;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532061.1;transl_table=11
NC_009952.1	RefSeq	gene	723225	724619	.	-	.	ID=gene728;Name=Dshi_0716;Dbxref=GeneID:5711151;gbkey=Gene;locus_tag=Dshi_0716
NC_009952.1	RefSeq	CDS	723225	724619	.	-	0	ID=cds711;Name=YP_001532062.1;Parent=gene728;Note=PFAM: helix-turn-helix domain protein%3B protein of unknown function DUF955%3B NCBI conserved domains: COG3800%2C Predicted transcriptional regulator%3B no significant swissprot%3B high Ref YP hit to transcriptional regulator%2C XRE family %5BSilicibacter sp. TM1040%5D.%3B XRE %28HTH-3%29 family;Dbxref=Genbank:YP_001532062.1,GeneID:5711151;gbkey=CDS;product=transcriptional regulator;protein_id=YP_001532062.1;transl_table=11
NC_009952.1	RefSeq	gene	724680	725906	.	-	.	ID=gene729;Name=Dshi_0717;Dbxref=GeneID:5711152;gbkey=Gene;locus_tag=Dshi_0717
NC_009952.1	RefSeq	CDS	724680	725906	.	-	0	ID=cds712;Name=YP_001532063.1;Parent=gene729;Note=TIGRFAM: drug resistance transporter%2C Bcr%2FCflA subfamily PFAM: major facilitator superfamily MFS_1%2C NCBI conserved domains: PRK11652%2C emrD%2C multidrug resistance protein D%3B low swissprot hit to Bicyclomycin resistance protein %28bcr%29 from Escherichia coli K12%3B high Ref ZP hit to MFS protein%2C putative %5BRoseobacter sp. AzwK-3b%5D.;Dbxref=Genbank:YP_001532063.1,GeneID:5711152;gbkey=CDS;product=multidrug resistance protein;protein_id=YP_001532063.1;transl_table=11
NC_009952.1	RefSeq	gene	726256	727788	.	+	.	ID=gene730;Name=pccB;Dbxref=GeneID:5711153;gbkey=Gene;gene=pccB;locus_tag=Dshi_0718
NC_009952.1	RefSeq	CDS	726256	727788	.	+	0	ID=cds713;Name=YP_001532064.1;Parent=gene730;Note=Probably a dodecamer composed of six biotin-containing alpha subunits and six beta subunits.;Dbxref=Genbank:YP_001532064.1,GeneID:5711153;gbkey=CDS;gene=pccB;product=carboxyl transferase;protein_id=YP_001532064.1;transl_table=11
NC_009952.1	RefSeq	gene	727888	728286	.	+	.	ID=gene731;Name=Dshi_0719;Dbxref=GeneID:5711154;gbkey=Gene;locus_tag=Dshi_0719
NC_009952.1	RefSeq	CDS	727888	728286	.	+	0	ID=cds714;Name=YP_001532065.1;Parent=gene731;Dbxref=Genbank:YP_001532065.1,GeneID:5711154;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532065.1;transl_table=11
NC_009952.1	RefSeq	gene	728279	728668	.	+	.	ID=gene732;Name=Dshi_0720;Dbxref=GeneID:5711155;gbkey=Gene;locus_tag=Dshi_0720
NC_009952.1	RefSeq	CDS	728279	728668	.	+	0	ID=cds715;Name=YP_001532066.1;Parent=gene732;Note=Active on single-stranded mRNA. Inhibits protein synthesis by cleavage of mRNA.;Dbxref=Genbank:YP_001532066.1,GeneID:5711155;gbkey=CDS;product=endoribonuclease L-PSP;protein_id=YP_001532066.1;transl_table=11
NC_009952.1	RefSeq	gene	728665	729036	.	+	.	ID=gene733;Name=Dshi_0721;Dbxref=GeneID:5711156;gbkey=Gene;locus_tag=Dshi_0721
NC_009952.1	RefSeq	CDS	728665	729036	.	+	0	ID=cds716;Name=YP_001532067.1;Parent=gene733;Note=weak similarity to genes in Rhodobacteraceae;Dbxref=Genbank:YP_001532067.1,GeneID:5711156;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532067.1;transl_table=11
NC_009952.1	RefSeq	gene	729051	729410	.	+	.	ID=gene734;Name=Dshi_0722;Dbxref=GeneID:5711157;gbkey=Gene;locus_tag=Dshi_0722
NC_009952.1	RefSeq	CDS	729051	729410	.	+	0	ID=cds717;Name=YP_001532068.1;Parent=gene734;Note=conserved in Rhodobacteraceae and Bradyrhizobiaceae;Dbxref=Genbank:YP_001532068.1,GeneID:5711157;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532068.1;transl_table=11
NC_009952.1	RefSeq	gene	729769	731814	.	+	.	ID=gene735;Name=pccA;Dbxref=GeneID:5711158;gbkey=Gene;gene=pccA;locus_tag=Dshi_0723
NC_009952.1	RefSeq	CDS	729769	731814	.	+	0	ID=cds718;Name=YP_001532069.1;Parent=gene735;Note=biotin-dependent enzyme%2C Probably a dodecamer composed of six biotin-containing alpha subunits and six beta subunits.;Dbxref=Genbank:YP_001532069.1,GeneID:5711158;gbkey=CDS;gene=pccA;product=carbamoyl-phosphate synthase L chain ATP-binding;protein_id=YP_001532069.1;transl_table=11
NC_009952.1	RefSeq	gene	731879	732328	.	-	.	ID=gene736;Name=Dshi_0724;Dbxref=GeneID:5711159;gbkey=Gene;locus_tag=Dshi_0724
NC_009952.1	RefSeq	CDS	731879	732328	.	-	0	ID=cds719;Name=YP_001532070.1;Parent=gene736;Dbxref=Genbank:YP_001532070.1,GeneID:5711159;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532070.1;transl_table=11
NC_009952.1	RefSeq	gene	732437	733432	.	+	.	ID=gene737;Name=Dshi_0725;Dbxref=GeneID:5711160;gbkey=Gene;locus_tag=Dshi_0725
NC_009952.1	RefSeq	CDS	732437	733432	.	+	0	ID=cds720;Name=YP_001532071.1;Parent=gene737;Dbxref=Genbank:YP_001532071.1,GeneID:5711160;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532071.1;transl_table=11
NC_009952.1	RefSeq	gene	733404	735542	.	+	.	ID=gene738;Name=bhbA;Dbxref=GeneID:5711161;gbkey=Gene;gene=bhbA;locus_tag=Dshi_0726
NC_009952.1	RefSeq	CDS	733404	735542	.	+	0	ID=cds721;Name=YP_001532072.1;Parent=gene738;Note=MDM%3B functions in conversion of succinate to propionate;Dbxref=Genbank:YP_001532072.1,GeneID:5711161;gbkey=CDS;gene=bhbA;product=methylmalonyl-CoA mutase;protein_id=YP_001532072.1;transl_table=11
NC_009952.1	RefSeq	gene	735721	736650	.	-	.	ID=gene739;Name=Dshi_0727;Dbxref=GeneID:5711162;gbkey=Gene;locus_tag=Dshi_0727
NC_009952.1	RefSeq	CDS	735721	736650	.	-	0	ID=cds722;Name=YP_001532073.1;Parent=gene739;Note=HTH and substrate binding domain%3B LysR family;Dbxref=Genbank:YP_001532073.1,GeneID:5711162;gbkey=CDS;product=transcriptional regulator;protein_id=YP_001532073.1;transl_table=11
NC_009952.1	RefSeq	gene	737004	739244	.	+	.	ID=gene740;Name=mnhA;Dbxref=GeneID:5711163;gbkey=Gene;gene=mnhA;locus_tag=Dshi_0728
NC_009952.1	RefSeq	CDS	737004	739244	.	+	0	ID=cds723;Name=YP_001532074.1;Parent=gene740;Dbxref=Genbank:YP_001532074.1,GeneID:5711163;gbkey=CDS;gene=mnhA;product=quinone dependent NADH dehydrogenase;protein_id=YP_001532074.1;transl_table=11
NC_009952.1	RefSeq	gene	739241	739693	.	+	.	ID=gene741;Name=mnhB;Dbxref=GeneID:5711164;gbkey=Gene;gene=mnhB;locus_tag=Dshi_0729
NC_009952.1	RefSeq	CDS	739241	739693	.	+	0	ID=cds724;Name=YP_001532075.1;Parent=gene741;Dbxref=Genbank:YP_001532075.1,GeneID:5711164;gbkey=CDS;gene=mnhB;product=Na%2B%2FH%2B antiporter MnhB subunit-like protein;protein_id=YP_001532075.1;transl_table=11
NC_009952.1	RefSeq	gene	739693	740112	.	+	.	ID=gene742;Name=mnhC;Dbxref=GeneID:5711165;gbkey=Gene;gene=mnhC;locus_tag=Dshi_0730
NC_009952.1	RefSeq	CDS	739693	740112	.	+	0	ID=cds725;Name=YP_001532076.1;Parent=gene742;Note=subunit C of antiporter complex involved in resistance to high concentrations of Na%2B%2C K%2B%2C Li%2B and%2For alkali;Dbxref=Genbank:YP_001532076.1,GeneID:5711165;gbkey=CDS;gene=mnhC;product=putative monovalent cation%2FH%2B antiporter subunit C;protein_id=YP_001532076.1;transl_table=11
NC_009952.1	RefSeq	gene	740109	741644	.	+	.	ID=gene743;Name=mnhD;Dbxref=GeneID:5711166;gbkey=Gene;gene=mnhD;locus_tag=Dshi_0731
NC_009952.1	RefSeq	CDS	740109	741644	.	+	0	ID=cds726;Name=YP_001532077.1;Parent=gene743;Dbxref=Genbank:YP_001532077.1,GeneID:5711166;gbkey=CDS;gene=mnhD;product=quinone dependent NADH dehydrogenase;protein_id=YP_001532077.1;transl_table=11
NC_009952.1	RefSeq	gene	741641	741994	.	+	.	ID=gene744;Name=mnhE;Dbxref=GeneID:5711167;gbkey=Gene;gene=mnhE;locus_tag=Dshi_0732
NC_009952.1	RefSeq	CDS	741641	741994	.	+	0	ID=cds727;Name=YP_001532078.1;Parent=gene744;Note=Members of the PhaE%2FMrpE family are predicted to be integral membrane proteins with three transmembrane regions%2C involved in regulation of pH. PhaE is part of a potassium efflux system involved in pH regulation;Dbxref=Genbank:YP_001532078.1,GeneID:5711167;gbkey=CDS;gene=mnhE;product=cation antiporter;protein_id=YP_001532078.1;transl_table=11
NC_009952.1	RefSeq	gene	741987	742343	.	+	.	ID=gene745;Name=mnhF;Dbxref=GeneID:5711168;gbkey=Gene;gene=mnhF;locus_tag=Dshi_0733
NC_009952.1	RefSeq	CDS	741987	742343	.	+	0	ID=cds728;Name=YP_001532079.1;Parent=gene745;Note=Members of the PhaF%2FMrpF family are predicted to be integral membrane proteins with three transmembrane regions%2C involved in regulation of pH. PhaF is part of a potassium efflux system involved in pH regulation;Dbxref=Genbank:YP_001532079.1,GeneID:5711168;gbkey=CDS;gene=mnhF;product=multiple resistance and pH regulation protein F;protein_id=YP_001532079.1;transl_table=11
NC_009952.1	RefSeq	gene	742340	742687	.	+	.	ID=gene746;Name=mnhG;Dbxref=GeneID:5711169;gbkey=Gene;gene=mnhG;locus_tag=Dshi_0734
NC_009952.1	RefSeq	CDS	742340	742687	.	+	0	ID=cds729;Name=YP_001532080.1;Parent=gene746;Note=family of small%2C transmembrane proteins believed to be components of Na%2B%2FH%2B and K%2B%2FH%2B antiporters. Members%2C including proteins designated MnhG from Staphylococcus aureus and PhaG from Rhizobium meliloti%2C show some similarity to chain L of the NADH dehydrogenase I%2C which also translocates protons.%3B MnhG%2FPhaG subunit;Dbxref=Genbank:YP_001532080.1,GeneID:5711169;gbkey=CDS;gene=mnhG;product=monovalent cation%2Fproton antiporter;protein_id=YP_001532080.1;transl_table=11
NC_009952.1	RefSeq	gene	742674	743288	.	+	.	ID=gene747;Name=mnhG;Dbxref=GeneID:5711170;gbkey=Gene;gene=mnhG;locus_tag=Dshi_0735
NC_009952.1	RefSeq	CDS	742674	743288	.	+	0	ID=cds730;Name=YP_001532081.1;Parent=gene747;Dbxref=Genbank:YP_001532081.1,GeneID:5711170;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532081.1;transl_table=11
NC_009952.1	RefSeq	gene	743285	743770	.	+	.	ID=gene748;Name=Dshi_0736;Dbxref=GeneID:5711171;gbkey=Gene;locus_tag=Dshi_0736
NC_009952.1	RefSeq	CDS	743285	743770	.	+	0	ID=cds731;Name=YP_001532082.1;Parent=gene748;Note=protein N-Acetyl-transferase;Dbxref=Genbank:YP_001532082.1,GeneID:5711171;gbkey=CDS;product=N-acetyltransferase GCN5;protein_id=YP_001532082.1;transl_table=11
NC_009952.1	RefSeq	gene	743834	744517	.	+	.	ID=gene749;Name=Dshi_0737;Dbxref=GeneID:5711172;gbkey=Gene;locus_tag=Dshi_0737
NC_009952.1	RefSeq	CDS	743834	744517	.	+	0	ID=cds732;Name=YP_001532083.1;Parent=gene749;Dbxref=Genbank:YP_001532083.1,GeneID:5711172;gbkey=CDS;product=heat shock protein DnaJ domain-containing protein;protein_id=YP_001532083.1;transl_table=11
NC_009952.1	RefSeq	gene	744578	744895	.	+	.	ID=gene750;Name=Dshi_0738;Dbxref=GeneID:5711173;gbkey=Gene;locus_tag=Dshi_0738
NC_009952.1	RefSeq	CDS	744578	744895	.	+	0	ID=cds733;Name=YP_001532084.1;Parent=gene750;Dbxref=Genbank:YP_001532084.1,GeneID:5711173;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532084.1;transl_table=11
NC_009952.1	RefSeq	gene	744912	746432	.	-	.	ID=gene751;Name=ppx;Dbxref=GeneID:5711174;gbkey=Gene;gene=ppx;locus_tag=Dshi_0739
NC_009952.1	RefSeq	CDS	744912	746432	.	-	0	ID=cds734;Name=YP_001532085.1;Parent=gene751;Note=This family consists of the N-terminal region of exopolyphosphatase %28Ppx%29  and guanosine pentaphosphate phospho-hydrolase %28GppA%29.;Dbxref=Genbank:YP_001532085.1,GeneID:5711174;gbkey=CDS;gene=ppx;product=Ppx%2FGppA phosphatase;protein_id=YP_001532085.1;transl_table=11
NC_009952.1	RefSeq	gene	746526	748700	.	-	.	ID=gene752;Name=ppk1;Dbxref=GeneID:5711175;gbkey=Gene;gene=ppk1;locus_tag=Dshi_0740
NC_009952.1	RefSeq	CDS	746526	748700	.	-	0	ID=cds735;Name=YP_001532086.1;Parent=gene752;Note=catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate;Dbxref=Genbank:YP_001532086.1,GeneID:5711175;gbkey=CDS;gene=ppk1;product=polyphosphate kinase;protein_id=YP_001532086.1;transl_table=11
NC_009952.1	RefSeq	gene	748740	749429	.	-	.	ID=gene753;Name=Dshi_0741;Dbxref=GeneID:5711176;gbkey=Gene;locus_tag=Dshi_0741
NC_009952.1	RefSeq	CDS	748740	749429	.	-	0	ID=cds736;Name=YP_001532087.1;Parent=gene753;Note=weak evidence for predicted function%3B DnaA;Dbxref=Genbank:YP_001532087.1,GeneID:5711176;gbkey=CDS;product=chromosomal replication initiator;protein_id=YP_001532087.1;transl_table=11
NC_009952.1	RefSeq	gene	749426	750511	.	-	.	ID=gene754;Name=Dshi_0742;Dbxref=GeneID:5711177;gbkey=Gene;locus_tag=Dshi_0742
NC_009952.1	RefSeq	CDS	749426	750511	.	-	0	ID=cds737;Name=YP_001532088.1;Parent=gene754;Note=predicted transmembrane protein %2810TMH%29;Dbxref=Genbank:YP_001532088.1,GeneID:5711177;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532088.1;transl_table=11
NC_009952.1	RefSeq	gene	750674	752056	.	+	.	ID=gene755;Name=mcsS;Dbxref=GeneID:5711178;gbkey=Gene;gene=mcsS;locus_tag=Dshi_0743
NC_009952.1	RefSeq	CDS	750674	752056	.	+	0	ID=cds738;Name=YP_001532089.1;Parent=gene755;Note=Mechanosensitive %28MS%29 channels provide protection against hypo-osmotic shock%2C responding both to stretching of the cell membrane and to membrane depolarisation.;Dbxref=Genbank:YP_001532089.1,GeneID:5711178;gbkey=CDS;gene=mcsS;product=mechanosensitive ion channel protein MscS;protein_id=YP_001532089.1;transl_table=11
NC_009952.1	RefSeq	gene	752138	753475	.	+	.	ID=gene756;Name=proS;Dbxref=GeneID:5711179;gbkey=Gene;gene=proS;locus_tag=Dshi_0744
NC_009952.1	RefSeq	CDS	752138	753475	.	+	0	ID=cds739;Name=YP_001532090.1;Parent=gene756;Note=catalyzes the formation of prolyl-tRNA%28Pro%29 from proline and tRNA%28Pro%29;Dbxref=Genbank:YP_001532090.1,GeneID:5711179;gbkey=CDS;gene=proS;product=prolyl-tRNA synthetase;protein_id=YP_001532090.1;transl_table=11
NC_009952.1	RefSeq	gene	753664	754239	.	+	.	ID=gene757;Name=Dshi_0745;Dbxref=GeneID:5711180;gbkey=Gene;locus_tag=Dshi_0745
NC_009952.1	RefSeq	CDS	753664	754239	.	+	0	ID=cds740;Name=YP_001532091.1;Parent=gene757;Note=This family of redoxins includes peroxiredoxin%2C thioredoxin and glutaredoxin proteins.;Dbxref=Genbank:YP_001532091.1,GeneID:5711180;gbkey=CDS;product=redoxin domain-containing protein;protein_id=YP_001532091.1;transl_table=11
NC_009952.1	RefSeq	gene	754337	755023	.	+	.	ID=gene758;Name=aqpZ;Dbxref=GeneID:5711181;gbkey=Gene;gene=aqpZ;locus_tag=Dshi_0746
NC_009952.1	RefSeq	CDS	754337	755023	.	+	0	ID=cds741;Name=YP_001532092.1;Parent=gene758;Note=Transport of water across the membrane.;Dbxref=Genbank:YP_001532092.1,GeneID:5711181;gbkey=CDS;gene=aqpZ;product=MIP family channel protein;protein_id=YP_001532092.1;transl_table=11
NC_009952.1	RefSeq	gene	755116	756402	.	+	.	ID=gene759;Name=lolC;Dbxref=GeneID:5711182;gbkey=Gene;gene=lolC;locus_tag=Dshi_0747
NC_009952.1	RefSeq	CDS	755116	756402	.	+	0	ID=cds742;Name=YP_001532093.1;Parent=gene759;Note=Part of an ATP-dependent transport system responsible for the release of lipoproteins targeted to the outer membrane from the inner membrane.%3B transmembrane protein%2C LolC%2FE family;Dbxref=Genbank:YP_001532093.1,GeneID:5711182;gbkey=CDS;gene=lolC;product=lipoprotein releasing system;protein_id=YP_001532093.1;transl_table=11
NC_009952.1	RefSeq	gene	756395	757078	.	+	.	ID=gene760;Name=lolD;Dbxref=GeneID:5711183;gbkey=Gene;gene=lolD;locus_tag=Dshi_0748
NC_009952.1	RefSeq	CDS	756395	757078	.	+	0	ID=cds743;Name=YP_001532094.1;Parent=gene760;Note=Part of the ABC transporter complex lolCDE involved in the translocation of mature outer membrane-directed lipoproteins%2C from the inner membrane to the periplasmic chaperone%2C lolA. Responsible for the formation of the lolA-lipoprotein complex in an ATP-dependent manner;Dbxref=Genbank:YP_001532094.1,GeneID:5711183;gbkey=CDS;gene=lolD;product=ABC transporter-like protein;protein_id=YP_001532094.1;transl_table=11
NC_009952.1	RefSeq	gene	758372	760336	.	-	.	ID=gene761;Name=Dshi_0749;Dbxref=GeneID:5711184;gbkey=Gene;locus_tag=Dshi_0749
NC_009952.1	RefSeq	CDS	758372	760336	.	-	0	ID=cds744;Name=YP_001532095.1;Parent=gene761;Note=decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling;Dbxref=Genbank:YP_001532095.1,GeneID:5711184;gbkey=CDS;product=DNA topoisomerase IV subunit B;protein_id=YP_001532095.1;transl_table=11
NC_009952.1	RefSeq	gene	760995	761789	.	+	.	ID=gene762;Name=Dshi_0750;Dbxref=GeneID:5711185;gbkey=Gene;locus_tag=Dshi_0750
NC_009952.1	RefSeq	CDS	760995	761789	.	+	0	ID=cds745;Name=YP_001532096.1;Parent=gene762;Dbxref=Genbank:YP_001532096.1,GeneID:5711185;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532096.1;transl_table=11
NC_009952.1	RefSeq	gene	761970	762914	.	+	.	ID=gene763;Name=ppk2;Dbxref=GeneID:5711186;gbkey=Gene;gene=ppk2;locus_tag=Dshi_0751
NC_009952.1	RefSeq	CDS	761970	762914	.	+	0	ID=cds746;Name=YP_001532097.1;Parent=gene763;Note=Protein with ppk2 Domain%2C cytoplasmatic;Dbxref=Genbank:YP_001532097.1,GeneID:5711186;gbkey=CDS;gene=ppk2;product=hypothetical protein;protein_id=YP_001532097.1;transl_table=11
NC_009952.1	RefSeq	gene	762957	763637	.	+	.	ID=gene764;Name=Dshi_0752;Dbxref=GeneID:5711187;gbkey=Gene;locus_tag=Dshi_0752
NC_009952.1	RefSeq	CDS	762957	763637	.	+	0	ID=cds747;Name=YP_001532098.1;Parent=gene764;Note=contains DUF1007 domain;Dbxref=Genbank:YP_001532098.1,GeneID:5711187;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532098.1;transl_table=11
NC_009952.1	RefSeq	gene	763625	764581	.	+	.	ID=gene765;Name=nicO;Dbxref=GeneID:5711188;gbkey=Gene;gene=nicO;locus_tag=Dshi_0753
NC_009952.1	RefSeq	CDS	763625	764581	.	+	0	ID=cds748;Name=YP_001532099.1;Parent=gene765;Note=incorporation of nickel into H2-uptake hydrogenase and urease%2C signal peptide cleveage after AA 22%2C inner membrane;Dbxref=Genbank:YP_001532099.1,GeneID:5711188;gbkey=CDS;gene=nicO;product=high-affinity nickel-transporter;protein_id=YP_001532099.1;transl_table=11
NC_009952.1	RefSeq	gene	764591	765187	.	+	.	ID=gene766;Name=Dshi_0754;Dbxref=GeneID:5711189;gbkey=Gene;locus_tag=Dshi_0754
NC_009952.1	RefSeq	CDS	764591	765187	.	+	0	ID=cds749;Name=YP_001532100.1;Parent=gene766;Note=SAM-dependent methyltransferase%2C Substrate not known KEGG: rsp:RSP_0765 SAM-dependent methyltransferase;Dbxref=Genbank:YP_001532100.1,GeneID:5711189;gbkey=CDS;product=type 11 methyltransferase;protein_id=YP_001532100.1;transl_table=11
NC_009952.1	RefSeq	gene	765229	766599	.	+	.	ID=gene767;Name=Dshi_0755;Dbxref=GeneID:5711190;gbkey=Gene;locus_tag=Dshi_0755
NC_009952.1	RefSeq	CDS	765229	766599	.	+	0	ID=cds750;Name=YP_001532101.1;Parent=gene767;Dbxref=Genbank:YP_001532101.1,GeneID:5711190;gbkey=CDS;product=MATE efflux family protein;protein_id=YP_001532101.1;transl_table=11
NC_009952.1	RefSeq	gene	766585	767244	.	-	.	ID=gene768;Name=Dshi_0756;Dbxref=GeneID:5711191;gbkey=Gene;locus_tag=Dshi_0756
NC_009952.1	RefSeq	CDS	766585	767244	.	-	0	ID=cds751;Name=YP_001532102.1;Parent=gene768;Dbxref=Genbank:YP_001532102.1,GeneID:5711191;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532102.1;transl_table=11
NC_009952.1	RefSeq	gene	767248	768648	.	-	.	ID=gene769;Name=Dshi_0757;Dbxref=GeneID:5711192;gbkey=Gene;locus_tag=Dshi_0757
NC_009952.1	RefSeq	CDS	767248	768648	.	-	0	ID=cds752;Name=YP_001532103.1;Parent=gene769;Dbxref=Genbank:YP_001532103.1,GeneID:5711192;gbkey=CDS;product=selenium-binding protein;protein_id=YP_001532103.1;transl_table=11
NC_009952.1	RefSeq	gene	768813	769301	.	-	.	ID=gene770;Name=Dshi_0758;Dbxref=GeneID:5711193;gbkey=Gene;locus_tag=Dshi_0758
NC_009952.1	RefSeq	CDS	768813	769301	.	-	0	ID=cds753;Name=YP_001532104.1;Parent=gene770;Note=MarR family;Dbxref=Genbank:YP_001532104.1,GeneID:5711193;gbkey=CDS;product=transcriptional regulator;protein_id=YP_001532104.1;transl_table=11
NC_009952.1	RefSeq	gene	769384	769752	.	+	.	ID=gene771;Name=Dshi_0759;Dbxref=GeneID:5711194;gbkey=Gene;locus_tag=Dshi_0759
NC_009952.1	RefSeq	CDS	769384	769752	.	+	0	ID=cds754;Name=YP_001532105.1;Parent=gene771;Dbxref=Genbank:YP_001532105.1,GeneID:5711194;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532105.1;transl_table=11
NC_009952.1	RefSeq	gene	770254	770736	.	-	.	ID=gene772;Name=Dshi_0760;Dbxref=GeneID:5711195;gbkey=Gene;locus_tag=Dshi_0760
NC_009952.1	RefSeq	CDS	770254	770736	.	-	0	ID=cds755;Name=YP_001532106.1;Parent=gene772;Dbxref=Genbank:YP_001532106.1,GeneID:5711195;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532106.1;transl_table=11
NC_009952.1	RefSeq	gene	770763	771179	.	-	.	ID=gene773;Name=Dshi_0761;Dbxref=GeneID:5711196;gbkey=Gene;locus_tag=Dshi_0761
NC_009952.1	RefSeq	CDS	770763	771179	.	-	0	ID=cds756;Name=YP_001532107.1;Parent=gene773;Note=conserved in Rhodobacteraceae;Dbxref=Genbank:YP_001532107.1,GeneID:5711196;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532107.1;transl_table=11
NC_009952.1	RefSeq	gene	771187	772389	.	-	.	ID=gene774;Name=aspC;Dbxref=GeneID:5711197;gbkey=Gene;gene=aspC;locus_tag=Dshi_0762
NC_009952.1	RefSeq	CDS	771187	772389	.	-	0	ID=cds757;Name=YP_001532108.1;Parent=gene774;Note=catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate;Dbxref=Genbank:YP_001532108.1,GeneID:5711197;gbkey=CDS;gene=aspC;product=aspartate aminotransferase;protein_id=YP_001532108.1;transl_table=11
NC_009952.1	RefSeq	gene	772480	772872	.	+	.	ID=gene775;Name=Dshi_0763;Dbxref=GeneID:5711198;gbkey=Gene;locus_tag=Dshi_0763
NC_009952.1	RefSeq	CDS	772480	772872	.	+	0	ID=cds758;Name=YP_001532109.1;Parent=gene775;Note=Helix-Turn-Helix motif%3B XRE family;Dbxref=Genbank:YP_001532109.1,GeneID:5711198;gbkey=CDS;product=transcriptional regulator;protein_id=YP_001532109.1;transl_table=11
NC_009952.1	RefSeq	gene	772869	773168	.	+	.	ID=gene776;Name=Dshi_0764;Dbxref=GeneID:5711199;gbkey=Gene;locus_tag=Dshi_0764
NC_009952.1	RefSeq	CDS	772869	773168	.	+	0	ID=cds759;Name=YP_001532110.1;Parent=gene776;Dbxref=Genbank:YP_001532110.1,GeneID:5711199;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532110.1;transl_table=11
NC_009952.1	RefSeq	gene	773281	773778	.	+	.	ID=gene777;Name=Dshi_0765;Dbxref=GeneID:5711200;gbkey=Gene;locus_tag=Dshi_0765
NC_009952.1	RefSeq	CDS	773281	773778	.	+	0	ID=cds760;Name=YP_001532111.1;Parent=gene777;Note=HTH domain%3B MarR family;Dbxref=Genbank:YP_001532111.1,GeneID:5711200;gbkey=CDS;product=transcriptional regulator;protein_id=YP_001532111.1;transl_table=11
NC_009952.1	RefSeq	gene	773856	774593	.	-	.	ID=gene778;Name=Dshi_0766;Dbxref=GeneID:5711201;gbkey=Gene;locus_tag=Dshi_0766
NC_009952.1	RefSeq	CDS	773856	774593	.	-	0	ID=cds761;Name=YP_001532112.1;Parent=gene778;Note=putative lipoprotein;Dbxref=Genbank:YP_001532112.1,GeneID:5711201;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532112.1;transl_table=11
NC_009952.1	RefSeq	gene	774595	775023	.	-	.	ID=gene779;Name=Dshi_0767;Dbxref=GeneID:5711202;gbkey=Gene;locus_tag=Dshi_0767
NC_009952.1	RefSeq	CDS	774595	775023	.	-	0	ID=cds762;Name=YP_001532113.1;Parent=gene779;Note=Lactoylglutathione lyase;Dbxref=Genbank:YP_001532113.1,GeneID:5711202;gbkey=CDS;product=glyoxalase%2Fbleomycin resistance protein%2Fdioxygenase;protein_id=YP_001532113.1;transl_table=11
NC_009952.1	RefSeq	gene	775200	776117	.	+	.	ID=gene780;Name=thyX;Dbxref=GeneID:5711203;gbkey=Gene;gene=thyX;locus_tag=Dshi_0768
NC_009952.1	RefSeq	CDS	775200	776117	.	+	0	ID=cds763;Name=YP_001532114.1;Parent=gene780;Note=flavin dependent thymidylate synthase%3B ThyX%3B thymidylate synthase complementing protein%3B catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate%3B the enzyme from Mycobacterium tuberculosis forms homotetramers%3B uses FAD as a cofactor;Dbxref=Genbank:YP_001532114.1,GeneID:5711203;gbkey=CDS;gene=thyX;product=FAD-dependent thymidylate synthase;protein_id=YP_001532114.1;transl_table=11
NC_009952.1	RefSeq	gene	776205	776414	.	-	.	ID=gene781;Name=csp1;Dbxref=GeneID:5711204;gbkey=Gene;gene=csp1;locus_tag=Dshi_0769
NC_009952.1	RefSeq	CDS	776205	776414	.	-	0	ID=cds764;Name=YP_001532115.1;Parent=gene781;Note=CSD%28cold shock DNA-binding%29 domain containing Protein%2C binds single stranded DNA%2C 4 homologs in E. coli cspABCD;Dbxref=Genbank:YP_001532115.1,GeneID:5711204;gbkey=CDS;gene=csp1;product=cold-shock DNA-binding domain-containing protein;protein_id=YP_001532115.1;transl_table=11
NC_009952.1	RefSeq	gene	776635	776946	.	+	.	ID=gene782;Name=Dshi_0770;Dbxref=GeneID:5711205;gbkey=Gene;locus_tag=Dshi_0770
NC_009952.1	RefSeq	CDS	776635	776946	.	+	0	ID=cds765;Name=YP_001532116.1;Parent=gene782;Note=conserved arsC domain;Dbxref=Genbank:YP_001532116.1,GeneID:5711205;gbkey=CDS;product=arsenate reductase-like protein;protein_id=YP_001532116.1;transl_table=11
NC_009952.1	RefSeq	gene	776904	777470	.	-	.	ID=gene783;Name=Dshi_0771;Dbxref=GeneID:5711206;gbkey=Gene;locus_tag=Dshi_0771
NC_009952.1	RefSeq	CDS	776904	777470	.	-	0	ID=cds766;Name=YP_001532117.1;Parent=gene783;Dbxref=Genbank:YP_001532117.1,GeneID:5711206;gbkey=CDS;product=DoxX family protein;protein_id=YP_001532117.1;transl_table=11
NC_009952.1	RefSeq	gene	777464	778210	.	-	.	ID=gene784;Name=Dshi_0772;Dbxref=GeneID:5711207;gbkey=Gene;locus_tag=Dshi_0772
NC_009952.1	RefSeq	CDS	777464	778210	.	-	0	ID=cds767;Name=YP_001532118.1;Parent=gene784;Dbxref=Genbank:YP_001532118.1,GeneID:5711207;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532118.1;transl_table=11
NC_009952.1	RefSeq	gene	778207	779157	.	-	.	ID=gene785;Name=Dshi_0773;Dbxref=GeneID:5711208;gbkey=Gene;locus_tag=Dshi_0773
NC_009952.1	RefSeq	CDS	778207	779157	.	-	0	ID=cds768;Name=YP_001532119.1;Parent=gene785;Dbxref=Genbank:YP_001532119.1,GeneID:5711208;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532119.1;transl_table=11
NC_009952.1	RefSeq	gene	779200	779487	.	-	.	ID=gene786;Name=Dshi_0774;Dbxref=GeneID:5711209;gbkey=Gene;locus_tag=Dshi_0774
NC_009952.1	RefSeq	CDS	779200	779487	.	-	0	ID=cds769;Name=YP_001532120.1;Parent=gene786;Note=predicted inner membrane protein%2C conserved in Rhodobacteraceae;Dbxref=Genbank:YP_001532120.1,GeneID:5711209;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532120.1;transl_table=11
NC_009952.1	RefSeq	gene	780036	781115	.	+	.	ID=gene787;Name=ttuC;Dbxref=GeneID:5711210;gbkey=Gene;gene=ttuC;locus_tag=Dshi_0775
NC_009952.1	RefSeq	CDS	780036	781115	.	+	0	ID=cds770;Name=YP_001532121.1;Parent=gene787;Note=multiple catalytic activities: EC:1.1.1.93: Tartrate %2B NAD%28%2B%29 %3C%3D%3E oxaloglycolate %2B NADH%3B EC:4.1.1.73: %28R%2CR%29-tartrate %3C%3D%3E D-glycerate %2B CO2%3B EC:1.1.1.83: %28R%29-malate %2B NAD%28%2B%29 %3C%3D%3E pyruvate %2B CO%282%29 %2B NADH%3B cytoplasmatic%3B Belongs to the isocitrate and isopropylmalate dehydrogenases family;Dbxref=Genbank:YP_001532121.1,GeneID:5711210;gbkey=CDS;gene=ttuC;product=tartrate dehydrogenase;protein_id=YP_001532121.1;transl_table=11
NC_009952.1	RefSeq	gene	781394	782179	.	+	.	ID=gene788;Name=Dshi_0776;Dbxref=GeneID:5711211;gbkey=Gene;locus_tag=Dshi_0776
NC_009952.1	RefSeq	CDS	781394	782179	.	+	0	ID=cds771;Name=YP_001532122.1;Parent=gene788;Note=similar to ppaA in the photosynthetic gene cluster%2C cytosolic;Dbxref=Genbank:YP_001532122.1,GeneID:5711211;gbkey=CDS;product=cobalamin B12-binding domain-containing protein;protein_id=YP_001532122.1;transl_table=11
NC_009952.1	RefSeq	gene	782164	784128	.	-	.	ID=gene789;Name=thrS;Dbxref=GeneID:5711212;gbkey=Gene;gene=thrS;locus_tag=Dshi_0777
NC_009952.1	RefSeq	CDS	782164	784128	.	-	0	ID=cds772;Name=YP_001532123.1;Parent=gene789;Note=catalyzes a two-step reaction%2C first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA%3B catalyzes the formation of threonyl-tRNA%28Thr%29 from threonine and tRNA%28Thr%29;Dbxref=Genbank:YP_001532123.1,GeneID:5711212;gbkey=CDS;gene=thrS;product=threonyl-tRNA synthetase;protein_id=YP_001532123.1;transl_table=11
NC_009952.1	RefSeq	gene	784257	784445	.	-	.	ID=gene790;Name=Dshi_0778;Dbxref=GeneID:5711213;gbkey=Gene;locus_tag=Dshi_0778
NC_009952.1	RefSeq	CDS	784257	784445	.	-	0	ID=cds773;Name=YP_001532124.1;Parent=gene790;Dbxref=Genbank:YP_001532124.1,GeneID:5711213;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532124.1;transl_table=11
NC_009952.1	RefSeq	gene	784566	785522	.	+	.	ID=gene791;Name=Dshi_0779;Dbxref=GeneID:5711214;gbkey=Gene;locus_tag=Dshi_0779
NC_009952.1	RefSeq	CDS	784566	785522	.	+	0	ID=cds774;Name=YP_001532125.1;Parent=gene791;Note=protein with 2 functional domains: MarR and acetyltransferase %28GNAT%29%3B MarR family with acetyltransferase activity;Dbxref=Genbank:YP_001532125.1,GeneID:5711214;gbkey=CDS;product=transcriptional regulator;protein_id=YP_001532125.1;transl_table=11
NC_009952.1	RefSeq	gene	785598	785674	.	+	.	ID=gene792;Name=Dshi_6018;Dbxref=GeneID:5711215;gbkey=Gene;locus_tag=Dshi_6018
NC_009952.1	RefSeq	tRNA	785598	785674	.	+	.	ID=rna17;Parent=gene792;Dbxref=GeneID:5711215;codons=25;gbkey=tRNA;product=tRNA-His
NC_009952.1	RefSeq	exon	785598	785674	.	+	.	ID=id20;Parent=rna17;Dbxref=GeneID:5711215;codons=25;gbkey=tRNA;product=tRNA-His
NC_009952.1	RefSeq	gene	785693	786637	.	-	.	ID=gene793;Name=Dshi_0780;Dbxref=GeneID:5711216;gbkey=Gene;locus_tag=Dshi_0780
NC_009952.1	RefSeq	CDS	785693	786637	.	-	0	ID=cds775;Name=YP_001532126.1;Parent=gene793;Note=Hydrolase%2C alpha%2Fbeta fold motiv with catalytic triade;Dbxref=Genbank:YP_001532126.1,GeneID:5711216;gbkey=CDS;product=alpha%2Fbeta hydrolase fold protein;protein_id=YP_001532126.1;transl_table=11
NC_009952.1	RefSeq	gene	786642	786929	.	-	.	ID=gene794;Name=Dshi_0781;Dbxref=GeneID:5711217;gbkey=Gene;locus_tag=Dshi_0781
NC_009952.1	RefSeq	CDS	786642	786929	.	-	0	ID=cds776;Name=YP_001532127.1;Parent=gene794;Note=contains SCP-2 sterol transfer family domain;Dbxref=Genbank:YP_001532127.1,GeneID:5711217;gbkey=CDS;product=sterol-binding domain-containing protein;protein_id=YP_001532127.1;transl_table=11
NC_009952.1	RefSeq	gene	787003	787569	.	+	.	ID=gene795;Name=Dshi_0782;Dbxref=GeneID:5711218;gbkey=Gene;locus_tag=Dshi_0782
NC_009952.1	RefSeq	CDS	787003	787569	.	+	0	ID=cds777;Name=YP_001532128.1;Parent=gene795;Note=putative Tetratricopeptide TPR_2 repeat protein;Dbxref=Genbank:YP_001532128.1,GeneID:5711218;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532128.1;transl_table=11
NC_009952.1	RefSeq	gene	787616	790579	.	+	.	ID=gene796;Name=Dshi_0783;Dbxref=GeneID:5711219;gbkey=Gene;locus_tag=Dshi_0783
NC_009952.1	RefSeq	CDS	787616	790579	.	+	0	ID=cds778;Name=YP_001532129.1;Parent=gene796;Note=contains Helicase domain;Dbxref=Genbank:YP_001532129.1,GeneID:5711219;gbkey=CDS;product=helicase domain-containing protein;protein_id=YP_001532129.1;transl_table=11
NC_009952.1	RefSeq	gene	790711	790959	.	+	.	ID=gene797;Name=Dshi_0784;Dbxref=GeneID:5711220;gbkey=Gene;locus_tag=Dshi_0784
NC_009952.1	RefSeq	CDS	790711	790959	.	+	0	ID=cds779;Name=YP_001532130.1;Parent=gene797;Dbxref=Genbank:YP_001532130.1,GeneID:5711220;gbkey=CDS;product=RNA-binding protein S4;protein_id=YP_001532130.1;transl_table=11
NC_009952.1	RefSeq	gene	791008	791346	.	+	.	ID=gene798;Name=fdxA;Dbxref=GeneID:5711221;gbkey=Gene;gene=fdxA;locus_tag=Dshi_0785
NC_009952.1	RefSeq	CDS	791008	791346	.	+	0	ID=cds780;Name=YP_001532131.1;Parent=gene798;Note=contains %5B3Fe-4S%5D and %5B4Fe-4S%5D Cys cluster;Dbxref=Genbank:YP_001532131.1,GeneID:5711221;gbkey=CDS;gene=fdxA;product=4Fe-4S ferredoxin;protein_id=YP_001532131.1;transl_table=11
NC_009952.1	RefSeq	gene	791654	792166	.	+	.	ID=gene799;Name=Dshi_0786;Dbxref=GeneID:5711222;gbkey=Gene;locus_tag=Dshi_0786
NC_009952.1	RefSeq	CDS	791654	792166	.	+	0	ID=cds781;Name=YP_001532132.1;Parent=gene799;Note=similar to N-terminus of M. xanthus carD protein%3B CarD family;Dbxref=Genbank:YP_001532132.1,GeneID:5711222;gbkey=CDS;product=transcriptional regulator;protein_id=YP_001532132.1;transl_table=11
NC_009952.1	RefSeq	gene	792216	792992	.	-	.	ID=gene800;Name=cobS1;Dbxref=GeneID:5711223;gbkey=Gene;gene=cobS1;locus_tag=Dshi_0787
NC_009952.1	RefSeq	CDS	792216	792992	.	-	0	ID=cds782;Name=YP_001532133.1;Parent=gene800;Note=Cobalamin biosynthesis%2C Reaction: Cobamide coenzyme %2B GMP %3C%3D%3E Adenosine-GDP-cobinamide %2B alpha-Ribazole;Dbxref=Genbank:YP_001532133.1,GeneID:5711223;gbkey=CDS;gene=cobS1;product=cobalamin-5-phosphate synthase CobS;protein_id=YP_001532133.1;transl_table=11
NC_009952.1	RefSeq	gene	793089	794126	.	+	.	ID=gene801;Name=cobT;Dbxref=GeneID:5711224;gbkey=Gene;gene=cobT;locus_tag=Dshi_0788
NC_009952.1	RefSeq	CDS	793089	794126	.	+	0	ID=cds783;Name=YP_001532134.1;Parent=gene801;Note=catalyzes the synthesis of alpha-ribazole-5%27-phosphate from nicotinate mononucleotide and 5%2C6-dimethylbenzimidazole;Dbxref=Genbank:YP_001532134.1,GeneID:5711224;gbkey=CDS;gene=cobT;product=nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase;protein_id=YP_001532134.1;transl_table=11
NC_009952.1	RefSeq	gene	794130	796142	.	-	.	ID=gene802;Name=kefC;Dbxref=GeneID:5711225;gbkey=Gene;gene=kefC;locus_tag=Dshi_0789
NC_009952.1	RefSeq	CDS	794130	796142	.	-	0	ID=cds784;Name=YP_001532135.1;Parent=gene802;Note=glutathione regulated%2C  K%2B%2FH%2B antiporter%2C NAD-binding domain;Dbxref=Genbank:YP_001532135.1,GeneID:5711225;gbkey=CDS;gene=kefC;product=potassium efflux system protein;protein_id=YP_001532135.1;transl_table=11
NC_009952.1	RefSeq	gene	796285	798666	.	-	.	ID=gene803;Name=Dshi_0790;Dbxref=GeneID:5711226;gbkey=Gene;locus_tag=Dshi_0790
NC_009952.1	RefSeq	CDS	796285	798666	.	-	0	ID=cds785;Name=YP_001532136.1;Parent=gene803;Note=conserved in Rhodobacteraceae;Dbxref=Genbank:YP_001532136.1,GeneID:5711226;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532136.1;transl_table=11
NC_009952.1	RefSeq	gene	798789	799526	.	+	.	ID=gene804;Name=Dshi_0791;Dbxref=GeneID:5711227;gbkey=Gene;locus_tag=Dshi_0791
NC_009952.1	RefSeq	CDS	798789	799526	.	+	0	ID=cds786;Name=YP_001532137.1;Parent=gene804;Note=protein of unknown function DUF541%2C bacterial membrane or periplasm protein;Dbxref=Genbank:YP_001532137.1,GeneID:5711227;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532137.1;transl_table=11
NC_009952.1	RefSeq	gene	799585	799959	.	-	.	ID=gene805;Name=Dshi_0792;Dbxref=GeneID:5711228;gbkey=Gene;locus_tag=Dshi_0792
NC_009952.1	RefSeq	CDS	799585	799959	.	-	0	ID=cds787;Name=YP_001532138.1;Parent=gene805;Dbxref=Genbank:YP_001532138.1,GeneID:5711228;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532138.1;transl_table=11
NC_009952.1	RefSeq	gene	800127	801422	.	-	.	ID=gene806;Name=metB2;Dbxref=GeneID:5711229;gbkey=Gene;gene=metB2;locus_tag=Dshi_0793
NC_009952.1	RefSeq	CDS	800127	801422	.	-	0	ID=cds788;Name=YP_001532139.1;Parent=gene806;Note=PLP-dependent%2C Reaction: O-Acetyl-L-homoserine %2B Methanethiol %3C%3D%3E L-Methionine %2B Acetate%2C Also reacts with other thiols and H2S%2C producing homocysteine or thioethers;Dbxref=Genbank:YP_001532139.1,GeneID:5711229;gbkey=CDS;gene=metB2;product=O-acetylhomoserine%2FO-acetylserine sulfhydrylase;protein_id=YP_001532139.1;transl_table=11
NC_009952.1	RefSeq	gene	801568	802155	.	+	.	ID=gene807;Name=hisB;Dbxref=GeneID:5711230;gbkey=Gene;gene=hisB;locus_tag=Dshi_0794
NC_009952.1	RefSeq	CDS	801568	802155	.	+	0	ID=cds789;Name=YP_001532140.1;Parent=gene807;Note=catalyzes the dehydration of D-erythro-1-%28imidazol-4-yl%29glycerol 3-phosphate to 3-%28imidazol-4-yl%29-2-oxopropyl phosphate in histidine biosynthesis;Dbxref=Genbank:YP_001532140.1,GeneID:5711230;gbkey=CDS;gene=hisB;product=imidazoleglycerol-phosphate dehydratase;protein_id=YP_001532140.1;transl_table=11
NC_009952.1	RefSeq	gene	802157	802795	.	+	.	ID=gene808;Name=hisH;Dbxref=GeneID:5711231;gbkey=Gene;gene=hisH;locus_tag=Dshi_0795
NC_009952.1	RefSeq	CDS	802157	802795	.	+	0	ID=cds790;Name=YP_001532141.1;Parent=gene808;Note=with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate%2C 5-aminoimidazol-4-carboxamide ribonucleotide%2C and glutamate in histidine biosynthesis%3B the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide;Dbxref=Genbank:YP_001532141.1,GeneID:5711231;gbkey=CDS;gene=hisH;product=imidazole glycerol phosphate synthase subunit HisH;protein_id=YP_001532141.1;transl_table=11
NC_009952.1	RefSeq	gene	802986	803912	.	-	.	ID=gene809;Name=argF;Dbxref=GeneID:5711232;gbkey=Gene;gene=argF;locus_tag=Dshi_0796
NC_009952.1	RefSeq	CDS	802986	803912	.	-	0	ID=cds791;Name=YP_001532142.1;Parent=gene809;Note=catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation;Dbxref=Genbank:YP_001532142.1,GeneID:5711232;gbkey=CDS;gene=argF;product=ornithine carbamoyltransferase;protein_id=YP_001532142.1;transl_table=11
NC_009952.1	RefSeq	gene	803909	804442	.	-	.	ID=gene810;Name=argF;Dbxref=GeneID:5711233;gbkey=Gene;gene=argF;locus_tag=Dshi_0797
NC_009952.1	RefSeq	CDS	803909	804442	.	-	0	ID=cds792;Name=YP_001532143.1;Parent=gene810;Note=weakly conserved GCN5-related N-acetyltransferase%2C possibly EC:3.5.1.16;Dbxref=Genbank:YP_001532143.1,GeneID:5711233;gbkey=CDS;product=N-acetyltransferase GCN5;protein_id=YP_001532143.1;transl_table=11
NC_009952.1	RefSeq	gene	804432	805613	.	-	.	ID=gene811;Name=argD;Dbxref=GeneID:5711234;gbkey=Gene;gene=argD;locus_tag=Dshi_0798
NC_009952.1	RefSeq	CDS	804432	805613	.	-	0	ID=cds793;Name=YP_001532144.1;Parent=gene811;Note=DapATase%3B functions in arginine biosynthetic pathway%3B catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N%282%29-acetyl-L-ornithine;Dbxref=Genbank:YP_001532144.1,GeneID:5711234;gbkey=CDS;gene=argD;product=acetylornithine transaminase protein;protein_id=YP_001532144.1;transl_table=11
NC_009952.1	RefSeq	gene	805880	806218	.	-	.	ID=gene812;Name=Dshi_0799;Dbxref=GeneID:5711235;gbkey=Gene;locus_tag=Dshi_0799
NC_009952.1	RefSeq	CDS	805880	806218	.	-	0	ID=cds794;Name=YP_001532145.1;Parent=gene812;Dbxref=Genbank:YP_001532145.1,GeneID:5711235;gbkey=CDS;product=putative DNA-binding protein;protein_id=YP_001532145.1;transl_table=11
NC_009952.1	RefSeq	gene	806381	807163	.	-	.	ID=gene813;Name=Dshi_0800;Dbxref=GeneID:5711236;gbkey=Gene;locus_tag=Dshi_0800
NC_009952.1	RefSeq	CDS	806381	807163	.	-	0	ID=cds795;Name=YP_001532146.1;Parent=gene813;Note=Helix-Turn-Helix motiv%2C iclR subfamily%3B IclR family;Dbxref=Genbank:YP_001532146.1,GeneID:5711236;gbkey=CDS;product=transcriptional regulator;protein_id=YP_001532146.1;transl_table=11
NC_009952.1	RefSeq	gene	807171	808529	.	-	.	ID=gene814;Name=Dshi_0801;Dbxref=GeneID:5711237;gbkey=Gene;locus_tag=Dshi_0801
NC_009952.1	RefSeq	CDS	807171	808529	.	-	0	ID=cds796;Name=YP_001532147.1;Parent=gene814;Note=TRAP gene cluster - dctPQM;Dbxref=Genbank:YP_001532147.1,GeneID:5711237;gbkey=CDS;product=TRAP dicarboxylate transporter subunit DctM;protein_id=YP_001532147.1;transl_table=11
NC_009952.1	RefSeq	gene	808526	809254	.	-	.	ID=gene815;Name=Dshi_0802;Dbxref=GeneID:5711238;gbkey=Gene;locus_tag=Dshi_0802
NC_009952.1	RefSeq	CDS	808526	809254	.	-	0	ID=cds797;Name=YP_001532148.1;Parent=gene815;Note=TRAP gene cluster - dctPQM;Dbxref=Genbank:YP_001532148.1,GeneID:5711238;gbkey=CDS;product=tripartite ATP-independent periplasmic transporter subunit DctQ;protein_id=YP_001532148.1;transl_table=11
NC_009952.1	RefSeq	gene	809305	810537	.	-	.	ID=gene816;Name=Dshi_0803;Dbxref=GeneID:5711239;gbkey=Gene;locus_tag=Dshi_0803
NC_009952.1	RefSeq	CDS	809305	810537	.	-	0	ID=cds798;Name=YP_001532149.1;Parent=gene816;Note=TRAP gene cluster - dctPQM;Dbxref=Genbank:YP_001532149.1,GeneID:5711239;gbkey=CDS;product=TRAP dicarboxylate transporter subunit DctP;protein_id=YP_001532149.1;transl_table=11
NC_009952.1	RefSeq	gene	810647	812269	.	+	.	ID=gene817;Name=Dshi_0804;Dbxref=GeneID:5711240;gbkey=Gene;locus_tag=Dshi_0804
NC_009952.1	RefSeq	CDS	810647	812269	.	+	0	ID=cds799;Name=YP_001532150.1;Parent=gene817;Note=contains N- and C-terminal GMC-oxidoreductase domain%2C FAD-binding;Dbxref=Genbank:YP_001532150.1,GeneID:5711240;gbkey=CDS;product=glucose-methanol-choline oxidoreductase;protein_id=YP_001532150.1;transl_table=11
NC_009952.1	RefSeq	gene	812303	814081	.	+	.	ID=gene818;Name=Dshi_0805;Dbxref=GeneID:5711241;gbkey=Gene;locus_tag=Dshi_0805
NC_009952.1	RefSeq	CDS	812303	814081	.	+	0	ID=cds800;Name=YP_001532151.1;Parent=gene818;Note=catalyzes the formation of acetyl phosphate and sulfite from 2-sulfoacetaldehyde%3B is active when grown on taurine as a sole carbon source;Dbxref=Genbank:YP_001532151.1,GeneID:5711241;gbkey=CDS;product=sulfoacetaldehyde acetyltransferase;protein_id=YP_001532151.1;transl_table=11
NC_009952.1	RefSeq	gene	814089	815120	.	+	.	ID=gene819;Name=tauZ;Dbxref=GeneID:5711242;gbkey=Gene;gene=tauZ;locus_tag=Dshi_0806
NC_009952.1	RefSeq	CDS	814089	815120	.	+	0	ID=cds801;Name=YP_001532152.1;Parent=gene819;Note=9 potential transmembrane domains;Dbxref=Genbank:YP_001532152.1,GeneID:5711242;gbkey=CDS;gene=tauZ;product=hypothetical protein;protein_id=YP_001532152.1;transl_table=11
NC_009952.1	RefSeq	gene	815127	816155	.	-	.	ID=gene820;Name=Dshi_0807;Dbxref=GeneID:5711243;gbkey=Gene;locus_tag=Dshi_0807
NC_009952.1	RefSeq	CDS	815127	816155	.	-	0	ID=cds802;Name=YP_001532153.1;Parent=gene820;Dbxref=Genbank:YP_001532153.1,GeneID:5711243;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532153.1;transl_table=11
NC_009952.1	RefSeq	gene	816307	817050	.	-	.	ID=gene821;Name=mipA;Dbxref=GeneID:5711244;gbkey=Gene;gene=mipA;locus_tag=Dshi_0808
NC_009952.1	RefSeq	CDS	816307	817050	.	-	0	ID=cds803;Name=YP_001532154.1;Parent=gene821;Note=integrates membrane bound lytic transglycosylase and penicillin-binding protein into a complex;Dbxref=Genbank:YP_001532154.1,GeneID:5711244;gbkey=CDS;gene=mipA;product=MltA-interacting MipA family protein;protein_id=YP_001532154.1;transl_table=11
NC_009952.1	RefSeq	gene	817541	819340	.	+	.	ID=gene822;Name=lepA;Dbxref=GeneID:5711435;gbkey=Gene;gene=lepA;locus_tag=Dshi_0809
NC_009952.1	RefSeq	CDS	817541	819340	.	+	0	ID=cds804;Name=YP_001532155.1;Parent=gene822;Note=binds to the ribosome on the universally-conserved alpha-sarcin loop;Dbxref=Genbank:YP_001532155.1,GeneID:5711435;gbkey=CDS;gene=lepA;product=GTP-binding protein LepA;protein_id=YP_001532155.1;transl_table=11
NC_009952.1	RefSeq	gene	820707	820949	.	+	.	ID=gene823;Name=Dshi_0810;Dbxref=GeneID:5711436;gbkey=Gene;locus_tag=Dshi_0810
NC_009952.1	RefSeq	CDS	820707	820949	.	+	0	ID=cds805;Name=YP_001532156.1;Parent=gene823;Dbxref=Genbank:YP_001532156.1,GeneID:5711436;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532156.1;transl_table=11
NC_009952.1	RefSeq	gene	820930	821163	.	+	.	ID=gene824;Name=Dshi_0811;Dbxref=GeneID:5711437;gbkey=Gene;locus_tag=Dshi_0811
NC_009952.1	RefSeq	CDS	820930	821163	.	+	0	ID=cds806;Name=YP_001532157.1;Parent=gene824;Dbxref=Genbank:YP_001532157.1,GeneID:5711437;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532157.1;transl_table=11
NC_009952.1	RefSeq	gene	821347	821664	.	+	.	ID=gene825;Name=Dshi_0812;Dbxref=GeneID:5711438;gbkey=Gene;locus_tag=Dshi_0812
NC_009952.1	RefSeq	CDS	821347	821664	.	+	0	ID=cds807;Name=YP_001532158.1;Parent=gene825;Note=TraR%2FDksA family;Dbxref=Genbank:YP_001532158.1,GeneID:5711438;gbkey=CDS;product=transcriptional regulator;protein_id=YP_001532158.1;transl_table=11
NC_009952.1	RefSeq	gene	821719	821967	.	+	.	ID=gene826;Name=Dshi_0813;Dbxref=GeneID:5711439;gbkey=Gene;locus_tag=Dshi_0813
NC_009952.1	RefSeq	CDS	821719	821967	.	+	0	ID=cds808;Name=YP_001532159.1;Parent=gene826;Note=2 predicted transmembrane domains;Dbxref=Genbank:YP_001532159.1,GeneID:5711439;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532159.1;transl_table=11
NC_009952.1	RefSeq	gene	822057	822242	.	+	.	ID=gene827;Name=Dshi_0814;Dbxref=GeneID:5711440;gbkey=Gene;locus_tag=Dshi_0814
NC_009952.1	RefSeq	CDS	822057	822242	.	+	0	ID=cds809;Name=YP_001532160.1;Parent=gene827;Note=conserved in Rhodobacteraceae and Bradyrhizobiaceae;Dbxref=Genbank:YP_001532160.1,GeneID:5711440;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532160.1;transl_table=11
NC_009952.1	RefSeq	gene	822447	822863	.	-	.	ID=gene828;Name=Dshi_0815;Dbxref=GeneID:5711441;gbkey=Gene;locus_tag=Dshi_0815
NC_009952.1	RefSeq	CDS	822447	822863	.	-	0	ID=cds810;Name=YP_001532161.1;Parent=gene828;Note=catalyzes the first step of the glyoxal pathway;Dbxref=Genbank:YP_001532161.1,GeneID:5711441;gbkey=CDS;product=glyoxalase%2Fbleomycin resistance protein%2Fdioxygenase;protein_id=YP_001532161.1;transl_table=11
NC_009952.1	RefSeq	gene	822910	823185	.	-	.	ID=gene829;Name=Dshi_0816;Dbxref=GeneID:5711442;gbkey=Gene;locus_tag=Dshi_0816
NC_009952.1	RefSeq	CDS	822910	823185	.	-	0	ID=cds811;Name=YP_001532162.1;Parent=gene829;Dbxref=Genbank:YP_001532162.1,GeneID:5711442;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532162.1;transl_table=11
NC_009952.1	RefSeq	gene	823262	823522	.	+	.	ID=gene830;Name=Dshi_0817;Dbxref=GeneID:5711443;gbkey=Gene;locus_tag=Dshi_0817
NC_009952.1	RefSeq	CDS	823262	823522	.	+	0	ID=cds812;Name=YP_001532163.1;Parent=gene830;Dbxref=Genbank:YP_001532163.1,GeneID:5711443;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532163.1;transl_table=11
NC_009952.1	RefSeq	gene	823519	823725	.	+	.	ID=gene831;Name=Dshi_0818;Dbxref=GeneID:5711444;gbkey=Gene;locus_tag=Dshi_0818
NC_009952.1	RefSeq	CDS	823519	823725	.	+	0	ID=cds813;Name=YP_001532164.1;Parent=gene831;Dbxref=Genbank:YP_001532164.1,GeneID:5711444;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532164.1;transl_table=11
NC_009952.1	RefSeq	gene	823750	824046	.	+	.	ID=gene832;Name=Dshi_0819;Dbxref=GeneID:5711445;gbkey=Gene;locus_tag=Dshi_0819
NC_009952.1	RefSeq	CDS	823750	824046	.	+	0	ID=cds814;Name=YP_001532165.1;Parent=gene832;Dbxref=Genbank:YP_001532165.1,GeneID:5711445;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532165.1;transl_table=11
NC_009952.1	RefSeq	gene	824267	825034	.	-	.	ID=gene833;Name=Dshi_0820;Dbxref=GeneID:5711446;gbkey=Gene;locus_tag=Dshi_0820
NC_009952.1	RefSeq	CDS	824267	825034	.	-	0	ID=cds815;Name=YP_001532166.1;Parent=gene833;Note=hydrolase%2C alpha%2Fbeta fold motif with catalytic triade;Dbxref=Genbank:YP_001532166.1,GeneID:5711446;gbkey=CDS;product=alpha%2Fbeta hydrolase fold protein;protein_id=YP_001532166.1;transl_table=11
NC_009952.1	RefSeq	gene	825116	825505	.	+	.	ID=gene834;Name=Dshi_5001;Dbxref=GeneID:8130631;gbkey=Gene;locus_tag=Dshi_5001
NC_009952.1	RefSeq	CDS	825116	825505	.	+	0	ID=cds816;Name=YP_003422325.1;Parent=gene834;Dbxref=Genbank:YP_003422325.1,GeneID:8130631;gbkey=CDS;product=hypothetical protein;protein_id=YP_003422325.1;transl_table=11
NC_009952.1	RefSeq	gene	825519	826814	.	-	.	ID=gene835;Name=glyA;Dbxref=GeneID:5711447;gbkey=Gene;gene=glyA;locus_tag=Dshi_0821
NC_009952.1	RefSeq	CDS	825519	826814	.	-	0	ID=cds817;Name=YP_001532167.1;Parent=gene835;Note=catalyzes the reaction of glycine with 5%2C10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate;Dbxref=Genbank:YP_001532167.1,GeneID:5711447;gbkey=CDS;gene=glyA;product=serine hydroxymethyltransferase;protein_id=YP_001532167.1;transl_table=11
NC_009952.1	RefSeq	gene	827012	827779	.	+	.	ID=gene836;Name=ppnK;Dbxref=GeneID:5711448;gbkey=Gene;gene=ppnK;locus_tag=Dshi_0822
NC_009952.1	RefSeq	CDS	827012	827779	.	+	0	ID=cds818;Name=YP_001532168.1;Parent=gene836;Note=catalyzes the phosphorylation of NAD to NADP;Dbxref=Genbank:YP_001532168.1,GeneID:5711448;gbkey=CDS;gene=ppnK;product=inorganic polyphosphate%2FATP-NAD kinase;protein_id=YP_001532168.1;transl_table=11
NC_009952.1	RefSeq	gene	827784	829175	.	-	.	ID=gene837;Name=Dshi_0823;Dbxref=GeneID:5711449;gbkey=Gene;locus_tag=Dshi_0823
NC_009952.1	RefSeq	CDS	827784	829175	.	-	0	ID=cds819;Name=YP_001532169.1;Parent=gene837;Note=Transcriptional regulater%2C ATP dependent Sigma54 interaction%2C part of two component system%3B Fis family;Dbxref=Genbank:YP_001532169.1,GeneID:5711449;gbkey=CDS;product=two component%2C sigma-54 specific%2C transcriptional regulator;protein_id=YP_001532169.1;transl_table=11
NC_009952.1	RefSeq	gene	829172	830701	.	-	.	ID=gene838;Name=Dshi_0824;Dbxref=GeneID:5711450;gbkey=Gene;locus_tag=Dshi_0824
NC_009952.1	RefSeq	CDS	829172	830701	.	-	0	ID=cds820;Name=YP_001532170.1;Parent=gene838;Note=C-Terminal domain of arcB %28aerobic respiration control%29%2C no PAS domain %28sensor%29;Dbxref=Genbank:YP_001532170.1,GeneID:5711450;gbkey=CDS;product=histidine kinase;protein_id=YP_001532170.1;transl_table=11
NC_009952.1	RefSeq	gene	830837	832729	.	-	.	ID=gene839;Name=Dshi_0825;Dbxref=GeneID:5711451;gbkey=Gene;locus_tag=Dshi_0825
NC_009952.1	RefSeq	CDS	830837	832729	.	-	0	ID=cds821;Name=YP_001532171.1;Parent=gene839;Note=AMP-binding domain%2C ligase similar to propionate-CoA and Acetyl-CoA ligase;Dbxref=Genbank:YP_001532171.1,GeneID:5711451;gbkey=CDS;product=AMP-dependent synthetase and ligase;protein_id=YP_001532171.1;transl_table=11
NC_009952.1	RefSeq	gene	832910	835189	.	-	.	ID=gene840;Name=Dshi_0826;Dbxref=GeneID:5711452;gbkey=Gene;locus_tag=Dshi_0826
NC_009952.1	RefSeq	CDS	832910	835189	.	-	0	ID=cds822;Name=YP_001532172.1;Parent=gene840;Note=NAD-dependent%3B catalyzes the oxidative decarboxylation of malate to form pyruvate%3B does not decarboxylate oxaloacetate;Dbxref=Genbank:YP_001532172.1,GeneID:5711452;gbkey=CDS;product=malic enzyme;protein_id=YP_001532172.1;transl_table=11
NC_009952.1	RefSeq	gene	835363	835755	.	+	.	ID=gene841;Name=cdd;Dbxref=GeneID:5711453;gbkey=Gene;gene=cdd;locus_tag=Dshi_0827
NC_009952.1	RefSeq	CDS	835363	835755	.	+	0	ID=cds823;Name=YP_001532173.1;Parent=gene841;Note=Reaction: Cytidine %2B H2O %3C%3D%3E Uridine %2B NH3;Dbxref=Genbank:YP_001532173.1,GeneID:5711453;gbkey=CDS;gene=cdd;product=cytidine deaminase;protein_id=YP_001532173.1;transl_table=11
NC_009952.1	RefSeq	gene	835752	837059	.	+	.	ID=gene842;Name=deoA;Dbxref=GeneID:5711454;gbkey=Gene;gene=deoA;locus_tag=Dshi_0828
NC_009952.1	RefSeq	CDS	835752	837059	.	+	0	ID=cds824;Name=YP_001532174.1;Parent=gene842;Note=Catalyzes the reversible phosphorolysis of thymidine%2C deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate;Dbxref=Genbank:YP_001532174.1,GeneID:5711454;gbkey=CDS;gene=deoA;product=thymidine phosphorylase;protein_id=YP_001532174.1;transl_table=11
NC_009952.1	RefSeq	gene	837056	838255	.	+	.	ID=gene843;Name=deoB;Dbxref=GeneID:5711455;gbkey=Gene;gene=deoB;locus_tag=Dshi_0829
NC_009952.1	RefSeq	CDS	837056	838255	.	+	0	ID=cds825;Name=YP_001532175.1;Parent=gene843;Note=catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose;Dbxref=Genbank:YP_001532175.1,GeneID:5711455;gbkey=CDS;gene=deoB;product=phosphopentomutase;protein_id=YP_001532175.1;transl_table=11
NC_009952.1	RefSeq	gene	838252	839247	.	+	.	ID=gene844;Name=add;Dbxref=GeneID:5711456;gbkey=Gene;gene=add;locus_tag=Dshi_0830
NC_009952.1	RefSeq	CDS	838252	839247	.	+	0	ID=cds826;Name=YP_001532176.1;Parent=gene844;Note=catalyzes the formation of inosine from adenosine;Dbxref=Genbank:YP_001532176.1,GeneID:5711456;gbkey=CDS;gene=add;product=adenosine deaminase;protein_id=YP_001532176.1;transl_table=11
NC_009952.1	RefSeq	gene	839244	839876	.	+	.	ID=gene845;Name=upp;Dbxref=GeneID:5711457;gbkey=Gene;gene=upp;locus_tag=Dshi_0831
NC_009952.1	RefSeq	CDS	839244	839876	.	+	0	ID=cds827;Name=YP_001532177.1;Parent=gene845;Note=Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate;Dbxref=Genbank:YP_001532177.1,GeneID:5711457;gbkey=CDS;gene=upp;product=uracil phosphoribosyltransferase;protein_id=YP_001532177.1;transl_table=11
NC_009952.1	RefSeq	gene	839877	840893	.	-	.	ID=gene846;Name=Dshi_0832;Dbxref=GeneID:5711458;gbkey=Gene;locus_tag=Dshi_0832
NC_009952.1	RefSeq	CDS	839877	840893	.	-	0	ID=cds828;Name=YP_001532178.1;Parent=gene846;Note=conserved in Rhodobacteraceae;Dbxref=Genbank:YP_001532178.1,GeneID:5711458;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532178.1;transl_table=11
NC_009952.1	RefSeq	gene	841358	842983	.	-	.	ID=gene847;Name=Dshi_0833;Dbxref=GeneID:5711459;gbkey=Gene;locus_tag=Dshi_0833
NC_009952.1	RefSeq	CDS	841358	842983	.	-	0	ID=cds829;Name=YP_001532179.1;Parent=gene847;Note=putative Acyl-CoA-Ligase %28inferred from Swiss-Prot%29;Dbxref=Genbank:YP_001532179.1,GeneID:5711459;gbkey=CDS;product=AMP-dependent synthetase and ligase;protein_id=YP_001532179.1;transl_table=11
NC_009952.1	RefSeq	gene	843077	843994	.	+	.	ID=gene848;Name=Dshi_0834;Dbxref=GeneID:5711460;gbkey=Gene;locus_tag=Dshi_0834
NC_009952.1	RefSeq	CDS	843077	843994	.	+	0	ID=cds830;Name=YP_001532180.1;Parent=gene848;Note=contains 1 N-terminal DUF6-domain;Dbxref=Genbank:YP_001532180.1,GeneID:5711460;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532180.1;transl_table=11
NC_009952.1	RefSeq	gene	844051	846264	.	-	.	ID=gene849;Name=fadJ;Dbxref=GeneID:5711461;gbkey=Gene;gene=fadJ;locus_tag=Dshi_0835
NC_009952.1	RefSeq	CDS	844051	846264	.	-	0	ID=cds831;Name=YP_001532181.1;Parent=gene849;Note=multifunctional enzyme: Enoyl-CoA hydratase%2F3-hydroxybutyryl-CoA epimerase%2C Reaction: %283S%29-3-Hydroxyacyl-CoA %3C%3D%3E trans-2%2C3-Dehydroacyl-CoA %2B H2O%2C Reaction: %28S%29-3-hydroxybutanoyl-CoA %3D %28R%29-3-hydroxybutanoyl-CoA%3B 3-hydroxyacyl-CoA dehydrogenase%2C Reaction%28EC:1.1.1.35%29:%283S%29-3-Hydroxyacyl-CoA %2B NAD%2B %3C%3D%3E 3-Oxoacyl-CoA %2B NADH %2B H%2B;Dbxref=Genbank:YP_001532181.1,GeneID:5711461;gbkey=CDS;gene=fadJ;product=3-hydroxyacyl-CoA dehydrogenase;protein_id=YP_001532181.1;transl_table=11
NC_009952.1	RefSeq	gene	846270	847481	.	-	.	ID=gene850;Name=fadA;Dbxref=GeneID:5711462;gbkey=Gene;gene=fadA;locus_tag=Dshi_0836
NC_009952.1	RefSeq	CDS	846270	847481	.	-	0	ID=cds832;Name=YP_001532182.1;Parent=gene850;Note=Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase%2C catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation;Dbxref=Genbank:YP_001532182.1,GeneID:5711462;gbkey=CDS;gene=fadA;product=acetyl-CoA acetyltransferase;protein_id=YP_001532182.1;transl_table=11
NC_009952.1	RefSeq	gene	847493	848128	.	-	.	ID=gene851;Name=Dshi_0837;Dbxref=GeneID:5711463;gbkey=Gene;locus_tag=Dshi_0837
NC_009952.1	RefSeq	CDS	847493	848128	.	-	0	ID=cds833;Name=YP_001532183.1;Parent=gene851;Note=not all GST-like proteins show catalytic activity;Dbxref=Genbank:YP_001532183.1,GeneID:5711463;gbkey=CDS;product=glutathione S-transferase domain-containing protein;protein_id=YP_001532183.1;transl_table=11
NC_009952.1	RefSeq	gene	848409	849557	.	-	.	ID=gene852;Name=Dshi_0838;Dbxref=GeneID:5711464;gbkey=Gene;locus_tag=Dshi_0838
NC_009952.1	RefSeq	CDS	848409	849557	.	-	0	ID=cds834;Name=YP_001532184.1;Parent=gene852;Note=contains all Acyl-CoA dehydrogenase domains%3B Reaction: Acyl-CoA %2B Acceptor %3C%3D%3E 2%2C3-Dehydroacyl-CoA %2B Reduced acceptor;Dbxref=Genbank:YP_001532184.1,GeneID:5711464;gbkey=CDS;product=acyl-CoA dehydrogenase domain-containing protein;protein_id=YP_001532184.1;transl_table=11
NC_009952.1	RefSeq	gene	849631	851409	.	-	.	ID=gene853;Name=Dshi_0839;Dbxref=GeneID:5711465;gbkey=Gene;locus_tag=Dshi_0839
NC_009952.1	RefSeq	CDS	849631	851409	.	-	0	ID=cds835;Name=YP_001532185.1;Parent=gene853;Note=Oxidoreductase acting on the CH-CH group of donors with other acceptors;Dbxref=Genbank:YP_001532185.1,GeneID:5711465;gbkey=CDS;product=acyl-CoA dehydrogenase domain-containing protein;protein_id=YP_001532185.1;transl_table=11
NC_009952.1	RefSeq	gene	851439	851840	.	-	.	ID=gene854;Name=Dshi_0840;Dbxref=GeneID:5711466;gbkey=Gene;locus_tag=Dshi_0840
NC_009952.1	RefSeq	CDS	851439	851840	.	-	0	ID=cds836;Name=YP_001532186.1;Parent=gene854;Note=contains winged helix DNA-binding motif%3B MerR family;Dbxref=Genbank:YP_001532186.1,GeneID:5711466;gbkey=CDS;product=transcriptional regulator;protein_id=YP_001532186.1;transl_table=11
NC_009952.1	RefSeq	gene	852286	853314	.	+	.	ID=gene855;Name=Dshi_0841;Dbxref=GeneID:5711467;gbkey=Gene;locus_tag=Dshi_0841
NC_009952.1	RefSeq	CDS	852286	853314	.	+	0	ID=cds837;Name=YP_001532187.1;Parent=gene855;Dbxref=Genbank:YP_001532187.1,GeneID:5711467;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532187.1;transl_table=11
NC_009952.1	RefSeq	gene	853357	853728	.	-	.	ID=gene856;Name=Dshi_0842;Dbxref=GeneID:5711468;gbkey=Gene;locus_tag=Dshi_0842
NC_009952.1	RefSeq	CDS	853357	853728	.	-	0	ID=cds838;Name=YP_001532188.1;Parent=gene856;Note=contains winged helix DNA-binding motif%3B MerR family;Dbxref=Genbank:YP_001532188.1,GeneID:5711468;gbkey=CDS;product=transcriptional regulator;protein_id=YP_001532188.1;transl_table=11
NC_009952.1	RefSeq	gene	853842	854276	.	+	.	ID=gene857;Name=Dshi_0843;Dbxref=GeneID:5711469;gbkey=Gene;locus_tag=Dshi_0843
NC_009952.1	RefSeq	CDS	853842	854276	.	+	0	ID=cds839;Name=YP_001532189.1;Parent=gene857;Note=thioesterase superfamily protein;Dbxref=Genbank:YP_001532189.1,GeneID:5711469;gbkey=CDS;product=thioesterase superfamily protein;protein_id=YP_001532189.1;transl_table=11
NC_009952.1	RefSeq	gene	854276	854797	.	+	.	ID=gene858;Name=Dshi_0844;Dbxref=GeneID:5711470;gbkey=Gene;locus_tag=Dshi_0844
NC_009952.1	RefSeq	CDS	854276	854797	.	+	0	ID=cds840;Name=YP_001532190.1;Parent=gene858;Note=thioesterase superfamily protein;Dbxref=Genbank:YP_001532190.1,GeneID:5711470;gbkey=CDS;product=thioesterase superfamily protein;protein_id=YP_001532190.1;transl_table=11
NC_009952.1	RefSeq	gene	854790	856109	.	+	.	ID=gene859;Name=Dshi_0845;Dbxref=GeneID:5711471;gbkey=Gene;locus_tag=Dshi_0845
NC_009952.1	RefSeq	CDS	854790	856109	.	+	0	ID=cds841;Name=YP_001532191.1;Parent=gene859;Note=contains two multi antimicrobial extrusion %28MATE%29 domains%2C drug%2Fsodium antiporter;Dbxref=Genbank:YP_001532191.1,GeneID:5711471;gbkey=CDS;product=MATE efflux family protein;protein_id=YP_001532191.1;transl_table=11
NC_009952.1	RefSeq	gene	856144	856491	.	-	.	ID=gene860;Name=arsC;Dbxref=GeneID:5711472;gbkey=Gene;gene=arsC;locus_tag=Dshi_0846
NC_009952.1	RefSeq	CDS	856144	856491	.	-	0	ID=cds842;Name=YP_001532192.1;Parent=gene860;Note=related to glutaredoxins%2C Reaction: Arsenate ion %2B Glutaredoxin %3C%3D%3E Arsenite %2B Glutaredoxin disulfide;Dbxref=Genbank:YP_001532192.1,GeneID:5711472;gbkey=CDS;gene=arsC;product=arsenate reductase;protein_id=YP_001532192.1;transl_table=11
NC_009952.1	RefSeq	gene	856488	857546	.	-	.	ID=gene861;Name=pyrD2;Dbxref=GeneID:5711473;gbkey=Gene;gene=pyrD2;locus_tag=Dshi_0847
NC_009952.1	RefSeq	CDS	856488	857546	.	-	0	ID=cds843;Name=YP_001532193.1;Parent=gene861;Note=catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway%3B uses a flavin nucleotide as an essential cofactor%3B class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus%2C which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors;Dbxref=Genbank:YP_001532193.1,GeneID:5711473;gbkey=CDS;gene=pyrD2;product=dihydroorotate dehydrogenase 2;protein_id=YP_001532193.1;transl_table=11
NC_009952.1	RefSeq	gene	857543	857878	.	-	.	ID=gene862;Name=pyrD2;Dbxref=GeneID:5711474;gbkey=Gene;gene=pyrD2;locus_tag=Dshi_0848
NC_009952.1	RefSeq	CDS	857543	857878	.	-	0	ID=cds844;Name=YP_001532194.1;Parent=gene862;Note=hypothetical bacterial and plant proteins of unknown function;Dbxref=Genbank:YP_001532194.1,GeneID:5711474;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532194.1;transl_table=11
NC_009952.1	RefSeq	gene	858004	859593	.	+	.	ID=gene863;Name=Dshi_0849;Dbxref=GeneID:5711475;gbkey=Gene;locus_tag=Dshi_0849
NC_009952.1	RefSeq	CDS	858004	859593	.	+	0	ID=cds845;Name=YP_001532195.1;Parent=gene863;Note=membrane bound%2C hydrolyzes extracellular nucleotides into membrane permeable nucleosides%2C Reaction: 5-Ribonucleotide %2B H2O %3C%3D%3E Ribonucleoside %2B Orthophosphate;Dbxref=Genbank:YP_001532195.1,GeneID:5711475;gbkey=CDS;product=5%27-nucleotidase;protein_id=YP_001532195.1;transl_table=11
NC_009952.1	RefSeq	gene	859653	861845	.	-	.	ID=gene864;Name=deaD;Dbxref=GeneID:5710539;gbkey=Gene;gene=deaD;locus_tag=Dshi_0850
NC_009952.1	RefSeq	CDS	859653	861845	.	-	0	ID=cds846;Name=YP_001532196.1;Parent=gene864;Note=he DEAD box helicases are involved in various aspects of RNA metabolism;Dbxref=Genbank:YP_001532196.1,GeneID:5710539;gbkey=CDS;gene=deaD;product=DEAD%2FDEAH box helicase;protein_id=YP_001532196.1;transl_table=11
NC_009952.1	RefSeq	gene	862042	862707	.	+	.	ID=gene865;Name=Dshi_0851;Dbxref=GeneID:5710540;gbkey=Gene;locus_tag=Dshi_0851
NC_009952.1	RefSeq	CDS	862042	862707	.	+	0	ID=cds847;Name=YP_001532197.1;Parent=gene865;Note=contains DUF159 domain;Dbxref=Genbank:YP_001532197.1,GeneID:5710540;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532197.1;transl_table=11
NC_009952.1	RefSeq	gene	862900	862973	.	+	.	ID=gene866;Name=Dshi_6019;Dbxref=GeneID:5710541;gbkey=Gene;locus_tag=Dshi_6019
NC_009952.1	RefSeq	tRNA	862900	862973	.	+	.	ID=rna18;Parent=gene866;Dbxref=GeneID:5710541;codons=62;gbkey=tRNA;product=tRNA-Gly
NC_009952.1	RefSeq	exon	862900	862973	.	+	.	ID=id21;Parent=rna18;Dbxref=GeneID:5710541;codons=62;gbkey=tRNA;product=tRNA-Gly
NC_009952.1	RefSeq	gene	863045	864853	.	+	.	ID=gene867;Name=msbA;Dbxref=GeneID:5710542;gbkey=Gene;gene=msbA;locus_tag=Dshi_0852
NC_009952.1	RefSeq	CDS	863045	864853	.	+	0	ID=cds848;Name=YP_001532198.1;Parent=gene867;Note=ABC transporter with fused ATPase and inner membrane subunits%2C Involved in lipid A export and inner membrane biogenesis%3B fused ATPase and inner membrane subunits;Dbxref=Genbank:YP_001532198.1,GeneID:5710542;gbkey=CDS;gene=msbA;product=lipid A ABC exporter family;protein_id=YP_001532198.1;transl_table=11
NC_009952.1	RefSeq	gene	865066	866964	.	+	.	ID=gene868;Name=fadD2;Dbxref=GeneID:5710543;gbkey=Gene;gene=fadD2;locus_tag=Dshi_0853
NC_009952.1	RefSeq	CDS	865066	866964	.	+	0	ID=cds849;Name=YP_001532199.1;Parent=gene868;Note=esterification and transport of exogeneous long chain fatty acids%2C Reaction: ATP %2B a long-chain carboxylic acid %2B CoA %3C%3D%3E AMP %2B diphosphate %2B an acyl-CoA;Dbxref=Genbank:YP_001532199.1,GeneID:5710543;gbkey=CDS;gene=fadD2;product=AMP-binding domain-containing protein;protein_id=YP_001532199.1;transl_table=11
NC_009952.1	RefSeq	gene	867049	867252	.	+	.	ID=gene869;Name=Dshi_0854;Dbxref=GeneID:5710544;gbkey=Gene;locus_tag=Dshi_0854
NC_009952.1	RefSeq	CDS	867049	867252	.	+	0	ID=cds850;Name=YP_001532200.1;Parent=gene869;Dbxref=Genbank:YP_001532200.1,GeneID:5710544;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532200.1;transl_table=11
NC_009952.1	RefSeq	gene	867282	868169	.	-	.	ID=gene870;Name=Dshi_0855;Dbxref=GeneID:5710545;gbkey=Gene;locus_tag=Dshi_0855
NC_009952.1	RefSeq	CDS	867282	868169	.	-	0	ID=cds851;Name=YP_001532201.1;Parent=gene870;Note=belongs to class of conserved hypothetical proteins with N-terminal transglutaminse domain%2C catalytic activity not proofed;Dbxref=Genbank:YP_001532201.1,GeneID:5710545;gbkey=CDS;product=transglutaminase domain-containing protein;protein_id=YP_001532201.1;transl_table=11
NC_009952.1	RefSeq	gene	868179	870593	.	-	.	ID=gene871;Name=Dshi_0856;Dbxref=GeneID:5710546;gbkey=Gene;locus_tag=Dshi_0856
NC_009952.1	RefSeq	CDS	868179	870593	.	-	0	ID=cds852;Name=YP_001532202.1;Parent=gene871;Note=contains DUF404%2C 407%2C 403 domains;Dbxref=Genbank:YP_001532202.1,GeneID:5710546;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532202.1;transl_table=11
NC_009952.1	RefSeq	gene	870602	873940	.	-	.	ID=gene872;Name=Dshi_0857;Dbxref=GeneID:5710547;gbkey=Gene;locus_tag=Dshi_0857
NC_009952.1	RefSeq	CDS	870602	873940	.	-	0	ID=cds853;Name=YP_001532203.1;Parent=gene872;Note=belongs to clas of conserved hypothetical proteins with N-terminal transglutaminse domain%2C catalytic activity not proofed;Dbxref=Genbank:YP_001532203.1,GeneID:5710547;gbkey=CDS;product=transglutaminase domain-containing protein;protein_id=YP_001532203.1;transl_table=11
NC_009952.1	RefSeq	gene	874196	874888	.	-	.	ID=gene873;Name=Dshi_0858;Dbxref=GeneID:5710548;gbkey=Gene;locus_tag=Dshi_0858
NC_009952.1	RefSeq	CDS	874196	874888	.	-	0	ID=cds854;Name=YP_001532204.1;Parent=gene873;Note=ABC transporter %28importer%29 gene cluster: 2nd ATP binding cassette %28ABC%29 domain%3B part of a heterotetramer;Dbxref=Genbank:YP_001532204.1,GeneID:5710548;gbkey=CDS;product=ABC transporter-like protein;protein_id=YP_001532204.1;transl_table=11
NC_009952.1	RefSeq	gene	874885	875637	.	-	.	ID=gene874;Name=Dshi_0859;Dbxref=GeneID:5710549;gbkey=Gene;locus_tag=Dshi_0859
NC_009952.1	RefSeq	CDS	874885	875637	.	-	0	ID=cds855;Name=YP_001532205.1;Parent=gene874;Note=ABC transporter %28importer%29 gene cluster: 1st ATP binding cassette %28ABC%29 domain%3B part of a heterotetramer;Dbxref=Genbank:YP_001532205.1,GeneID:5710549;gbkey=CDS;product=ABC transporter-like protein;protein_id=YP_001532205.1;transl_table=11
NC_009952.1	RefSeq	gene	875634	876608	.	-	.	ID=gene875;Name=Dshi_0860;Dbxref=GeneID:5710550;gbkey=Gene;locus_tag=Dshi_0860
NC_009952.1	RefSeq	CDS	875634	876608	.	-	0	ID=cds856;Name=YP_001532206.1;Parent=gene875;Note=ABC transporter %28importer%29 gene cluster: 2nd membrane spanning domain %28MSD%29%3B part of a heterotetramer;Dbxref=Genbank:YP_001532206.1,GeneID:5710550;gbkey=CDS;product=inner-membrane translocator;protein_id=YP_001532206.1;transl_table=11
NC_009952.1	RefSeq	gene	876610	877527	.	-	.	ID=gene876;Name=Dshi_0861;Dbxref=GeneID:5710551;gbkey=Gene;locus_tag=Dshi_0861
NC_009952.1	RefSeq	CDS	876610	877527	.	-	0	ID=cds857;Name=YP_001532207.1;Parent=gene876;Note=ABC transporter %28importer%29 gene cluster: 1st membrane spanning domain %28MSD%29%3B part of a heterotetramer;Dbxref=Genbank:YP_001532207.1,GeneID:5710551;gbkey=CDS;product=inner-membrane translocator;protein_id=YP_001532207.1;transl_table=11
NC_009952.1	RefSeq	gene	877656	878795	.	-	.	ID=gene877;Name=Dshi_0862;Dbxref=GeneID:5710552;gbkey=Gene;locus_tag=Dshi_0862
NC_009952.1	RefSeq	CDS	877656	878795	.	-	0	ID=cds858;Name=YP_001532208.1;Parent=gene877;Note=ABC transporter %28importer%29 gene cluster: receptor;Dbxref=Genbank:YP_001532208.1,GeneID:5710552;gbkey=CDS;product=extracellular ligand-binding receptor;protein_id=YP_001532208.1;transl_table=11
NC_009952.1	RefSeq	gene	878828	879064	.	-	.	ID=gene878;Name=Dshi_0863;Dbxref=GeneID:5710553;gbkey=Gene;locus_tag=Dshi_0863
NC_009952.1	RefSeq	CDS	878828	879064	.	-	0	ID=cds859;Name=YP_001532209.1;Parent=gene878;Note=helix-turn-helix DNA-binding motif%3B AsnC family;Dbxref=Genbank:YP_001532209.1,GeneID:5710553;gbkey=CDS;product=transcriptional regulator;protein_id=YP_001532209.1;transl_table=11
NC_009952.1	RefSeq	gene	879279	879737	.	+	.	ID=gene879;Name=Dshi_0864;Dbxref=GeneID:5710554;gbkey=Gene;locus_tag=Dshi_0864
NC_009952.1	RefSeq	CDS	879279	879737	.	+	0	ID=cds860;Name=YP_001532210.1;Parent=gene879;Note=putative oxidoreductase;Dbxref=Genbank:YP_001532210.1,GeneID:5710554;gbkey=CDS;product=%282Fe-2S%29-binding domain-containing protein;protein_id=YP_001532210.1;transl_table=11
NC_009952.1	RefSeq	gene	879739	881922	.	+	.	ID=gene880;Name=Dshi_0865;Dbxref=GeneID:5710555;gbkey=Gene;locus_tag=Dshi_0865
NC_009952.1	RefSeq	CDS	879739	881922	.	+	0	ID=cds861;Name=YP_001532211.1;Parent=gene880;Note=function not clear%2C similar to several Swiss-Prot curated proteins;Dbxref=Genbank:YP_001532211.1,GeneID:5710555;gbkey=CDS;product=aldehyde oxidase and xanthine dehydrogenase molybdopterin-binding;protein_id=YP_001532211.1;transl_table=11
NC_009952.1	RefSeq	gene	882060	882755	.	+	.	ID=gene881;Name=Dshi_0866;Dbxref=GeneID:5710556;gbkey=Gene;locus_tag=Dshi_0866
NC_009952.1	RefSeq	CDS	882060	882755	.	+	0	ID=cds862;Name=YP_001532212.1;Parent=gene881;Note=Hydrolase%2C alpha%2Fbeta fold motiv with catalytic triade%2C weak evidence;Dbxref=Genbank:YP_001532212.1,GeneID:5710556;gbkey=CDS;product=alpha%2Fbeta hydrolase fold protein;protein_id=YP_001532212.1;transl_table=11
NC_009952.1	RefSeq	gene	882752	883624	.	+	.	ID=gene882;Name=Dshi_0867;Dbxref=GeneID:5710557;gbkey=Gene;locus_tag=Dshi_0867
NC_009952.1	RefSeq	CDS	882752	883624	.	+	0	ID=cds863;Name=YP_001532213.1;Parent=gene882;Note=contains amidohydrolase 2 domain;Dbxref=Genbank:YP_001532213.1,GeneID:5710557;gbkey=CDS;product=amidohydrolase 2;protein_id=YP_001532213.1;transl_table=11
NC_009952.1	RefSeq	gene	883631	885007	.	-	.	ID=gene883;Name=Dshi_0868;Dbxref=GeneID:5710558;gbkey=Gene;locus_tag=Dshi_0868
NC_009952.1	RefSeq	CDS	883631	885007	.	-	0	ID=cds864;Name=YP_001532214.1;Parent=gene883;Note=peptidase related %28trEMBL%29;Dbxref=Genbank:YP_001532214.1,GeneID:5710558;gbkey=CDS;product=putative peptidase;protein_id=YP_001532214.1;transl_table=11
NC_009952.1	RefSeq	gene	885019	885909	.	-	.	ID=gene884;Name=Dshi_0869;Dbxref=GeneID:5710559;gbkey=Gene;locus_tag=Dshi_0869
NC_009952.1	RefSeq	CDS	885019	885909	.	-	0	ID=cds865;Name=YP_001532215.1;Parent=gene884;Note=phosphoesterase related %28trEMBL%29;Dbxref=Genbank:YP_001532215.1,GeneID:5710559;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532215.1;transl_table=11
NC_009952.1	RefSeq	gene	885921	887960	.	-	.	ID=gene885;Name=Dshi_0870;Dbxref=GeneID:5710560;gbkey=Gene;locus_tag=Dshi_0870
NC_009952.1	RefSeq	CDS	885921	887960	.	-	0	ID=cds866;Name=YP_001532216.1;Parent=gene885;Note=weak similarity to transcriptional regulator%2C SARP family%2C TPR repeats%3B SARP family;Dbxref=Genbank:YP_001532216.1,GeneID:5710560;gbkey=CDS;product=transcriptional regulator;protein_id=YP_001532216.1;transl_table=11
NC_009952.1	RefSeq	gene	888034	888300	.	-	.	ID=gene886;Name=Dshi_0871;Dbxref=GeneID:5710561;gbkey=Gene;locus_tag=Dshi_0871
NC_009952.1	RefSeq	CDS	888034	888300	.	-	0	ID=cds867;Name=YP_001532217.1;Parent=gene886;Dbxref=Genbank:YP_001532217.1,GeneID:5710561;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532217.1;transl_table=11
NC_009952.1	RefSeq	gene	888387	889970	.	+	.	ID=gene887;Name=Dshi_0872;Dbxref=GeneID:5710562;gbkey=Gene;locus_tag=Dshi_0872
NC_009952.1	RefSeq	CDS	888387	889970	.	+	0	ID=cds868;Name=YP_001532218.1;Parent=gene887;Note=ABC transporter %28importer%29 gene cluster: receptor %28cluster disrupted%29;Dbxref=Genbank:YP_001532218.1,GeneID:5710562;gbkey=CDS;product=family 5 extracellular solute-binding protein;protein_id=YP_001532218.1;transl_table=11
NC_009952.1	RefSeq	gene	890141	890812	.	+	.	ID=gene888;Name=Dshi_0873;Dbxref=GeneID:5710563;gbkey=Gene;locus_tag=Dshi_0873
NC_009952.1	RefSeq	CDS	890141	890812	.	+	0	ID=cds869;Name=YP_001532219.1;Parent=gene888;Dbxref=Genbank:YP_001532219.1,GeneID:5710563;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532219.1;transl_table=11
NC_009952.1	RefSeq	gene	890913	891137	.	+	.	ID=gene889;Name=Dshi_0874;Dbxref=GeneID:5710564;gbkey=Gene;locus_tag=Dshi_0874
NC_009952.1	RefSeq	CDS	890913	891137	.	+	0	ID=cds870;Name=YP_001532220.1;Parent=gene889;Note=part of extracellular ligand-binding receptor%3B family 5;Dbxref=Genbank:YP_001532220.1,GeneID:5710564;gbkey=CDS;product=extracellular solute-binding protein;protein_id=YP_001532220.1;transl_table=11
NC_009952.1	RefSeq	gene	891165	891431	.	+	.	ID=gene890;Name=Dshi_0875;Dbxref=GeneID:5710565;gbkey=Gene;locus_tag=Dshi_0875
NC_009952.1	RefSeq	CDS	891165	891431	.	+	0	ID=cds871;Name=YP_001532221.1;Parent=gene890;Dbxref=Genbank:YP_001532221.1,GeneID:5710565;gbkey=CDS;product=transposase IS3%2FIS911 family protein;protein_id=YP_001532221.1;transl_table=11
NC_009952.1	RefSeq	gene	891455	892276	.	+	.	ID=gene891;Name=Dshi_0876;Dbxref=GeneID:5710566;gbkey=Gene;locus_tag=Dshi_0876
NC_009952.1	RefSeq	CDS	891455	892276	.	+	0	ID=cds872;Name=YP_001532222.1;Parent=gene891;Dbxref=Genbank:YP_001532222.1,GeneID:5710566;gbkey=CDS;product=integrase catalytic subunit;protein_id=YP_001532222.1;transl_table=11
NC_009952.1	RefSeq	gene	892303	893685	.	+	.	ID=gene892;Name=Dshi_0877;Dbxref=GeneID:5710567;gbkey=Gene;locus_tag=Dshi_0877
NC_009952.1	RefSeq	CDS	892303	893685	.	+	0	ID=cds873;Name=YP_001532223.1;Parent=gene892;Note=ABC transporter %28importer%29 gene cluster: receptor%2C N-terminal truncated;Dbxref=Genbank:YP_001532223.1,GeneID:5710567;gbkey=CDS;product=4-phytase;protein_id=YP_001532223.1;transl_table=11
NC_009952.1	RefSeq	gene	894073	894540	.	-	.	ID=gene893;Name=Dshi_0878;Dbxref=GeneID:5710568;gbkey=Gene;locus_tag=Dshi_0878
NC_009952.1	RefSeq	CDS	894073	894540	.	-	0	ID=cds874;Name=YP_001532224.1;Parent=gene893;Dbxref=Genbank:YP_001532224.1,GeneID:5710568;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532224.1;transl_table=11
NC_009952.1	RefSeq	gene	895189	895593	.	-	.	ID=gene894;Name=Dshi_0879;Dbxref=GeneID:5710569;gbkey=Gene;locus_tag=Dshi_0879
NC_009952.1	RefSeq	CDS	895189	895593	.	-	0	ID=cds875;Name=YP_001532225.1;Parent=gene894;Dbxref=Genbank:YP_001532225.1,GeneID:5710569;gbkey=CDS;product=membrane protein;protein_id=YP_001532225.1;transl_table=11
NC_009952.1	RefSeq	gene	895664	896512	.	-	.	ID=gene895;Name=Dshi_0880;Dbxref=GeneID:5710570;gbkey=Gene;locus_tag=Dshi_0880
NC_009952.1	RefSeq	CDS	895664	896512	.	-	0	ID=cds876;Name=YP_001532226.1;Parent=gene895;Note=involved in the bacterial meta-cleavage pathways for degradation of aromatic compounds;Dbxref=Genbank:YP_001532226.1,GeneID:5710570;gbkey=CDS;product=hydratase%2Fdecarboxylase;protein_id=YP_001532226.1;transl_table=11
NC_009952.1	RefSeq	gene	896659	897645	.	+	.	ID=gene896;Name=Dshi_0881;Dbxref=GeneID:5710571;gbkey=Gene;locus_tag=Dshi_0881
NC_009952.1	RefSeq	CDS	896659	897645	.	+	0	ID=cds877;Name=YP_001532227.1;Parent=gene896;Note=ABC transporter %28importer%29 gene cluster: 1st membrane spanning domain %28MSD%29%3B part of a heterotetramer;Dbxref=Genbank:YP_001532227.1,GeneID:5710571;gbkey=CDS;product=binding-protein-dependent transport system inner membrane protein;protein_id=YP_001532227.1;transl_table=11
NC_009952.1	RefSeq	gene	897647	898615	.	+	.	ID=gene897;Name=Dshi_0882;Dbxref=GeneID:5710572;gbkey=Gene;locus_tag=Dshi_0882
NC_009952.1	RefSeq	CDS	897647	898615	.	+	0	ID=cds878;Name=YP_001532228.1;Parent=gene897;Note=ABC transporter %28importer%29 gene cluster: 2nd membrane spanning domain %28MSD%29%3B part of a heterotetramer;Dbxref=Genbank:YP_001532228.1,GeneID:5710572;gbkey=CDS;product=binding-protein-dependent transport system inner membrane protein;protein_id=YP_001532228.1;transl_table=11
NC_009952.1	RefSeq	gene	898620	898811	.	-	.	ID=gene898;Name=Dshi_0883;Dbxref=GeneID:5710573;gbkey=Gene;locus_tag=Dshi_0883
NC_009952.1	RefSeq	CDS	898620	898811	.	-	0	ID=cds879;Name=YP_001532229.1;Parent=gene898;Dbxref=Genbank:YP_001532229.1,GeneID:5710573;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532229.1;transl_table=11
NC_009952.1	RefSeq	gene	899031	900113	.	+	.	ID=gene899;Name=Dshi_0884;Dbxref=GeneID:5710574;gbkey=Gene;locus_tag=Dshi_0884
NC_009952.1	RefSeq	CDS	899031	900113	.	+	0	ID=cds880;Name=YP_001532230.1;Parent=gene899;Note=ABC transporter %28importer%29 gene cluster: 1st ATP binding cassette %28ABC%29 domain%3B part of a heterotetramer%3B ATPase subunit;Dbxref=Genbank:YP_001532230.1,GeneID:5710574;gbkey=CDS;product=oligopeptide%2Fdipeptide ABC transporter;protein_id=YP_001532230.1;transl_table=11
NC_009952.1	RefSeq	gene	900110	901078	.	+	.	ID=gene900;Name=Dshi_0885;Dbxref=GeneID:5710575;gbkey=Gene;locus_tag=Dshi_0885
NC_009952.1	RefSeq	CDS	900110	901078	.	+	0	ID=cds881;Name=YP_001532231.1;Parent=gene900;Note=ABC transporter %28importer%29 gene cluster: 2nd ATP binding cassette %28ABC%29 domain%3B part of a heterotetramer%3B ATPase subunit;Dbxref=Genbank:YP_001532231.1,GeneID:5710575;gbkey=CDS;product=oligopeptide%2Fdipeptide ABC transporter;protein_id=YP_001532231.1;transl_table=11
NC_009952.1	RefSeq	gene	901082	901924	.	-	.	ID=gene901;Name=Dshi_0886;Dbxref=GeneID:5710576;gbkey=Gene;locus_tag=Dshi_0886
NC_009952.1	RefSeq	CDS	901082	901924	.	-	0	ID=cds882;Name=YP_001532232.1;Parent=gene901;Note=Helix-Turn-Helix motif%2C iclR subfamily%3B IclR family;Dbxref=Genbank:YP_001532232.1,GeneID:5710576;gbkey=CDS;product=transcriptional regulator;protein_id=YP_001532232.1;transl_table=11
NC_009952.1	RefSeq	gene	902124	903314	.	+	.	ID=gene902;Name=sgaA2;Dbxref=GeneID:5710577;gbkey=Gene;gene=sgaA2;locus_tag=Dshi_0887
NC_009952.1	RefSeq	CDS	902124	903314	.	+	0	ID=cds883;Name=YP_001532233.1;Parent=gene902;Note=PLP-dependent enzyme%2C Reaction: L-serine %2B glyoxylate %3C%3D%3E 3-hydroxypyruvate %2B glycine;Dbxref=Genbank:YP_001532233.1,GeneID:5710577;gbkey=CDS;gene=sgaA2;product=serine--glyoxylate transaminase;protein_id=YP_001532233.1;transl_table=11
NC_009952.1	RefSeq	gene	903322	904296	.	+	.	ID=gene903;Name=Dshi_0888;Dbxref=GeneID:5710578;gbkey=Gene;locus_tag=Dshi_0888
NC_009952.1	RefSeq	CDS	903322	904296	.	+	0	ID=cds884;Name=YP_001532234.1;Parent=gene903;Note=PLP dependnet enzyme%2C catalytic activity not clear%2C Swiss-Prot hits to serine racemase%2C threonine dehydratase;Dbxref=Genbank:YP_001532234.1,GeneID:5710578;gbkey=CDS;product=pyridoxal-5%27-phosphate-dependent protein subunit beta;protein_id=YP_001532234.1;transl_table=11
NC_009952.1	RefSeq	gene	904311	905474	.	+	.	ID=gene904;Name=Dshi_0889;Dbxref=GeneID:5710579;gbkey=Gene;locus_tag=Dshi_0889
NC_009952.1	RefSeq	CDS	904311	905474	.	+	0	ID=cds885;Name=YP_001532235.1;Parent=gene904;Note=contains N-terminal domain of alanine racemase%2C C-terminal domain missing;Dbxref=Genbank:YP_001532235.1,GeneID:5710579;gbkey=CDS;product=alanine racemase domain-containing protein;protein_id=YP_001532235.1;transl_table=11
NC_009952.1	RefSeq	gene	905581	906573	.	+	.	ID=gene905;Name=Dshi_0890;Dbxref=GeneID:5710580;gbkey=Gene;locus_tag=Dshi_0890
NC_009952.1	RefSeq	CDS	905581	906573	.	+	0	ID=cds886;Name=YP_001532236.1;Parent=gene905;Note=catalyses the deamination of ornithine to proline%2C Reaction: L-Ornithine %3C%3D%3E L-Proline %2B NH3;Dbxref=Genbank:YP_001532236.1,GeneID:5710580;gbkey=CDS;product=ornithine cyclodeaminase;protein_id=YP_001532236.1;transl_table=11
NC_009952.1	RefSeq	gene	906667	907749	.	-	.	ID=gene906;Name=cysK;Dbxref=GeneID:5710581;gbkey=Gene;gene=cysK;locus_tag=Dshi_0891
NC_009952.1	RefSeq	CDS	906667	907749	.	-	0	ID=cds887;Name=YP_001532237.1;Parent=gene906;Note=PLP-dependent Enzyme%2C Reaction: O-Acetyl-L-serine %2B Hydrogen sulfide %3C%3D%3E L-Cysteine %2B Acetate;Dbxref=Genbank:YP_001532237.1,GeneID:5710581;gbkey=CDS;gene=cysK;product=cysteine synthase A;protein_id=YP_001532237.1;transl_table=11
NC_009952.1	RefSeq	gene	908084	909016	.	+	.	ID=gene907;Name=Dshi_0892;Dbxref=GeneID:5710582;gbkey=Gene;locus_tag=Dshi_0892
NC_009952.1	RefSeq	CDS	908084	909016	.	+	0	ID=cds888;Name=YP_001532238.1;Parent=gene907;Dbxref=Genbank:YP_001532238.1,GeneID:5710582;gbkey=CDS;product=transposase IS4 family protein;protein_id=YP_001532238.1;transl_table=11
NC_009952.1	RefSeq	gene	909083	910375	.	+	.	ID=gene908;Name=Dshi_0893;Dbxref=GeneID:5710583;gbkey=Gene;locus_tag=Dshi_0893
NC_009952.1	RefSeq	CDS	909083	910375	.	+	0	ID=cds889;Name=YP_001532239.1;Parent=gene908;Note=inner membrane protein;Dbxref=Genbank:YP_001532239.1,GeneID:5710583;gbkey=CDS;product=peptidoglycan-binding domain 1 protein;protein_id=YP_001532239.1;transl_table=11
NC_009952.1	RefSeq	gene	910592	911965	.	+	.	ID=gene909;Name=Dshi_0894;Dbxref=GeneID:5710584;gbkey=Gene;locus_tag=Dshi_0894
NC_009952.1	RefSeq	CDS	910592	911965	.	+	0	ID=cds890;Name=YP_001532240.1;Parent=gene909;Note=inner membrane protein;Dbxref=Genbank:YP_001532240.1,GeneID:5710584;gbkey=CDS;product=peptidoglycan-binding domain 1 protein;protein_id=YP_001532240.1;transl_table=11
NC_009952.1	RefSeq	gene	912355	914220	.	+	.	ID=gene910;Name=Dshi_0895;Dbxref=GeneID:5710585;gbkey=Gene;locus_tag=Dshi_0895
NC_009952.1	RefSeq	CDS	912355	914220	.	+	0	ID=cds891;Name=YP_001532241.1;Parent=gene910;Dbxref=Genbank:YP_001532241.1,GeneID:5710585;gbkey=CDS;product=peptidase S1 and S6 chymotrypsin%2FHap;protein_id=YP_001532241.1;transl_table=11
NC_009952.1	RefSeq	gene	914230	915495	.	+	.	ID=gene911;Name=Dshi_0896;Dbxref=GeneID:5710586;gbkey=Gene;locus_tag=Dshi_0896
NC_009952.1	RefSeq	CDS	914230	915495	.	+	0	ID=cds892;Name=YP_001532242.1;Parent=gene911;Dbxref=Genbank:YP_001532242.1,GeneID:5710586;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532242.1;transl_table=11
NC_009952.1	RefSeq	gene	915495	918620	.	+	.	ID=gene912;Name=Dshi_0897;Dbxref=GeneID:5710587;gbkey=Gene;locus_tag=Dshi_0897
NC_009952.1	RefSeq	CDS	915495	918620	.	+	0	ID=cds893;Name=YP_001532243.1;Parent=gene912;Note=Salmonella: activated by the global signal transduction%2Fregulatory system SsrA%2FB%2C when in eukaryotic cells;Dbxref=Genbank:YP_001532243.1,GeneID:5710587;gbkey=CDS;product=virulence protein SrfB;protein_id=YP_001532243.1;transl_table=11
NC_009952.1	RefSeq	gene	918640	921318	.	+	.	ID=gene913;Name=Dshi_0898;Dbxref=GeneID:5710588;gbkey=Gene;locus_tag=Dshi_0898
NC_009952.1	RefSeq	CDS	918640	921318	.	+	0	ID=cds894;Name=YP_001532244.1;Parent=gene913;Dbxref=Genbank:YP_001532244.1,GeneID:5710588;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532244.1;transl_table=11
NC_009952.1	RefSeq	gene	921315	922355	.	+	.	ID=gene914;Name=Dshi_0899;Dbxref=GeneID:5710589;gbkey=Gene;locus_tag=Dshi_0899
NC_009952.1	RefSeq	CDS	921315	922355	.	+	0	ID=cds895;Name=YP_001532245.1;Parent=gene914;Dbxref=Genbank:YP_001532245.1,GeneID:5710589;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532245.1;transl_table=11
NC_009952.1	RefSeq	gene	922370	924292	.	+	.	ID=gene915;Name=Dshi_0900;Dbxref=GeneID:5710590;gbkey=Gene;locus_tag=Dshi_0900
NC_009952.1	RefSeq	CDS	922370	924292	.	+	0	ID=cds896;Name=YP_001532246.1;Parent=gene915;Dbxref=Genbank:YP_001532246.1,GeneID:5710590;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532246.1;transl_table=11
NC_009952.1	RefSeq	gene	924297	925022	.	+	.	ID=gene916;Name=Dshi_0901;Dbxref=GeneID:5710591;gbkey=Gene;locus_tag=Dshi_0901
NC_009952.1	RefSeq	CDS	924297	925022	.	+	0	ID=cds897;Name=YP_001532247.1;Parent=gene916;Note=ABC transporter %28importer%29 gene cluster %28disrupted%29: ATP binding cassette %28ABC%29 domain%3B part of a heterotetramer;Dbxref=Genbank:YP_001532247.1,GeneID:5710591;gbkey=CDS;product=ABC transporter-like protein;protein_id=YP_001532247.1;transl_table=11
NC_009952.1	RefSeq	gene	925019	926218	.	+	.	ID=gene917;Name=Dshi_0902;Dbxref=GeneID:5710592;gbkey=Gene;locus_tag=Dshi_0902
NC_009952.1	RefSeq	CDS	925019	926218	.	+	0	ID=cds898;Name=YP_001532248.1;Parent=gene917;Note=ABC transporter %28importer%29 gene cluster %28disrupted%29: membrane spanning domain %28MSD%29%3B part of a heterotetramer;Dbxref=Genbank:YP_001532248.1,GeneID:5710592;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532248.1;transl_table=11
NC_009952.1	RefSeq	gene	926215	927828	.	+	.	ID=gene918;Name=Dshi_0903;Dbxref=GeneID:5710593;gbkey=Gene;locus_tag=Dshi_0903
NC_009952.1	RefSeq	CDS	926215	927828	.	+	0	ID=cds899;Name=YP_001532249.1;Parent=gene918;Dbxref=Genbank:YP_001532249.1,GeneID:5710593;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532249.1;transl_table=11
NC_009952.1	RefSeq	gene	927835	928704	.	-	.	ID=gene919;Name=Dshi_0904;Dbxref=GeneID:5710594;gbkey=Gene;locus_tag=Dshi_0904
NC_009952.1	RefSeq	CDS	927835	928704	.	-	0	ID=cds900;Name=YP_001532250.1;Parent=gene919;Note=conserved only in R. denitrificans;Dbxref=Genbank:YP_001532250.1,GeneID:5710594;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532250.1;transl_table=11
NC_009952.1	RefSeq	gene	928897	929556	.	+	.	ID=gene920;Name=Dshi_5007;Dbxref=GeneID:8130632;gbkey=Gene;locus_tag=Dshi_5007
NC_009952.1	RefSeq	CDS	928897	929556	.	+	0	ID=cds901;Name=YP_003422326.1;Parent=gene920;Dbxref=Genbank:YP_003422326.1,GeneID:8130632;gbkey=CDS;product=hypothetical protein;protein_id=YP_003422326.1;transl_table=11
NC_009952.1	RefSeq	gene	929570	930199	.	+	.	ID=gene921;Name=Dshi_0905;Dbxref=GeneID:5710595;gbkey=Gene;locus_tag=Dshi_0905
NC_009952.1	RefSeq	CDS	929570	930199	.	+	0	ID=cds902;Name=YP_001532251.1;Parent=gene921;Note=membrane protein%2C contains a pair of UPF0126 domains;Dbxref=Genbank:YP_001532251.1,GeneID:5710595;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532251.1;transl_table=11
NC_009952.1	RefSeq	gene	930196	930930	.	-	.	ID=gene922;Name=Dshi_0906;Dbxref=GeneID:5710596;gbkey=Gene;locus_tag=Dshi_0906
NC_009952.1	RefSeq	CDS	930196	930930	.	-	0	ID=cds903;Name=YP_001532252.1;Parent=gene922;Note=ABC transporter %28importer%29 gene cluster: membrane spanning domain %28MSD%29%3B part of a heterotetramer;Dbxref=Genbank:YP_001532252.1,GeneID:5710596;gbkey=CDS;product=binding-protein-dependent transport system inner membrane protein;protein_id=YP_001532252.1;transl_table=11
NC_009952.1	RefSeq	gene	930927	931655	.	-	.	ID=gene923;Name=Dshi_0907;Dbxref=GeneID:5710597;gbkey=Gene;locus_tag=Dshi_0907
NC_009952.1	RefSeq	CDS	930927	931655	.	-	0	ID=cds904;Name=YP_001532253.1;Parent=gene923;Note=ABC transporter %28importer%29 gene cluster: 1st ATP binding cassette %28ABC%29 domain%3B part of a heterotetramer;Dbxref=Genbank:YP_001532253.1,GeneID:5710597;gbkey=CDS;product=ABC transporter-like protein;protein_id=YP_001532253.1;transl_table=11
NC_009952.1	RefSeq	gene	931652	932350	.	-	.	ID=gene924;Name=Dshi_0908;Dbxref=GeneID:5710598;gbkey=Gene;locus_tag=Dshi_0908
NC_009952.1	RefSeq	CDS	931652	932350	.	-	0	ID=cds905;Name=YP_001532254.1;Parent=gene924;Note=involved in thiamine biosynthesis%3B TenA family;Dbxref=Genbank:YP_001532254.1,GeneID:5710598;gbkey=CDS;product=transcriptional activator;protein_id=YP_001532254.1;transl_table=11
NC_009952.1	RefSeq	gene	932347	933282	.	-	.	ID=gene925;Name=Dshi_0909;Dbxref=GeneID:5710599;gbkey=Gene;locus_tag=Dshi_0909
NC_009952.1	RefSeq	CDS	932347	933282	.	-	0	ID=cds906;Name=YP_001532255.1;Parent=gene925;Note=ABC transporter %28importer%29 gene cluster: receptor%2C NMT1%2FTHI5 like domain%2C involved in Thiamine biosynthesis;Dbxref=Genbank:YP_001532255.1,GeneID:5710599;gbkey=CDS;product=NMT1%2FTHI5 like domain-containing protein;protein_id=YP_001532255.1;transl_table=11
NC_009952.1	RefSeq	gene	933279	934244	.	-	.	ID=gene926;Name=thiF;Dbxref=GeneID:5710600;gbkey=Gene;gene=thiF;locus_tag=Dshi_0910
NC_009952.1	RefSeq	CDS	933279	934244	.	-	0	ID=cds907;Name=YP_001532256.1;Parent=gene926;Note=contains thiF and MoeZ%2FB-domain;Dbxref=Genbank:YP_001532256.1,GeneID:5710600;gbkey=CDS;gene=thiF;product=UBA%2FTHIF-type NAD%2FFAD-binding protein;protein_id=YP_001532256.1;transl_table=11
NC_009952.1	RefSeq	gene	934241	934840	.	-	.	ID=gene927;Name=thiE;Dbxref=GeneID:5710601;gbkey=Gene;gene=thiE;locus_tag=Dshi_0911
NC_009952.1	RefSeq	CDS	934241	934840	.	-	0	ID=cds908;Name=YP_001532257.1;Parent=gene927;Note=Magnesium dependent%2C Reaction: 2-Methyl-4-amino-5-hydroxymethylpyrimidine diphosphate %2B 4-Methyl-5-%282-phosphoethyl%29-thiazole %3C%3D%3E Pyrophosphate %2B Thiaminmonophosphate;Dbxref=Genbank:YP_001532257.1,GeneID:5710601;gbkey=CDS;gene=thiE;product=thiamine-phosphate diphosphorylase;protein_id=YP_001532257.1;transl_table=11
NC_009952.1	RefSeq	gene	934837	935631	.	-	.	ID=gene928;Name=thiG;Dbxref=GeneID:5710602;gbkey=Gene;gene=thiG;locus_tag=Dshi_0912
NC_009952.1	RefSeq	CDS	934837	935631	.	-	0	ID=cds909;Name=YP_001532258.1;Parent=gene928;Note=Required for the synthesis of the thiazole moiety of thiamine;Dbxref=Genbank:YP_001532258.1,GeneID:5710602;gbkey=CDS;gene=thiG;product=thiazole biosynthesis family protein;protein_id=YP_001532258.1;transl_table=11
NC_009952.1	RefSeq	gene	935635	935829	.	-	.	ID=gene929;Name=Dshi_0913;Dbxref=GeneID:5710603;gbkey=Gene;locus_tag=Dshi_0913
NC_009952.1	RefSeq	CDS	935635	935829	.	-	0	ID=cds910;Name=YP_001532259.1;Parent=gene929;Note=involved in sulphur transfer;Dbxref=Genbank:YP_001532259.1,GeneID:5710603;gbkey=CDS;product=thiamine biosynthesis protein ThiS;protein_id=YP_001532259.1;transl_table=11
NC_009952.1	RefSeq	gene	935813	936790	.	-	.	ID=gene930;Name=thiO;Dbxref=GeneID:5710604;gbkey=Gene;gene=thiO;locus_tag=Dshi_0914
NC_009952.1	RefSeq	CDS	935813	936790	.	-	0	ID=cds911;Name=YP_001532260.1;Parent=gene930;Note=FAD dependent oxidoreductase%2C active with glycine%2C sarcosine%2C N-ethylglycine%2C D-alanine%2C D-alpha-aminobutyrate%2C D-proline%2C D-pipecolate and N-methyl-D-alanine;Dbxref=Genbank:YP_001532260.1,GeneID:5710604;gbkey=CDS;gene=thiO;product=glycine oxidase ThiO;protein_id=YP_001532260.1;transl_table=11
NC_009952.1	RefSeq	gene	936787	937584	.	-	.	ID=gene931;Name=thiD;Dbxref=GeneID:5710605;gbkey=Gene;gene=thiD;locus_tag=Dshi_0915
NC_009952.1	RefSeq	CDS	936787	937584	.	-	0	ID=cds912;Name=YP_001532261.1;Parent=gene931;Note=cofactor biosynthesis%2C Reaction: ATP %2B 4-amino-2-methyl-5-phosphomethylpyrimidine %3C%3D%3E ADP %2B 4-amino-2-methyl-5-diphosphomethylpyrimidine;Dbxref=Genbank:YP_001532261.1,GeneID:5710605;gbkey=CDS;gene=thiD;product=phosphomethylpyrimidine kinase;protein_id=YP_001532261.1;transl_table=11
NC_009952.1	RefSeq	gene	937856	939046	.	+	.	ID=gene932;Name=Dshi_0916;Dbxref=GeneID:5710606;gbkey=Gene;locus_tag=Dshi_0916
NC_009952.1	RefSeq	CDS	937856	939046	.	+	0	ID=cds913;Name=YP_001532262.1;Parent=gene932;Note=RND transporters are involved in multidrug resistance and heavy metal resistance. The resistance is performed by H%2B driven export of the toxic compounds.%3B RND family%2C MFP subunit;Dbxref=Genbank:YP_001532262.1,GeneID:5710606;gbkey=CDS;product=efflux transporter;protein_id=YP_001532262.1;transl_table=11
NC_009952.1	RefSeq	gene	939057	942221	.	+	.	ID=gene933;Name=Dshi_0917;Dbxref=GeneID:5710607;gbkey=Gene;locus_tag=Dshi_0917
NC_009952.1	RefSeq	CDS	939057	942221	.	+	0	ID=cds914;Name=YP_001532263.1;Parent=gene933;Note=RND transporters are involved in multidrug resistance%2C heavy metal resistance. The resistance is performed by H%2B driven export of the toxic compounds.;Dbxref=Genbank:YP_001532263.1,GeneID:5710607;gbkey=CDS;product=acriflavin resistance protein;protein_id=YP_001532263.1;transl_table=11
NC_009952.1	RefSeq	gene	942472	943404	.	-	.	ID=gene934;Name=Dshi_0918;Dbxref=GeneID:5710608;gbkey=Gene;locus_tag=Dshi_0918
NC_009952.1	RefSeq	CDS	942472	943404	.	-	0	ID=cds915;Name=YP_001532264.1;Parent=gene934;Note=belongs to a mostly uncharacterised family of membrane transport proteins found in eukaryotes%2C bacteria and archaea;Dbxref=Genbank:YP_001532264.1,GeneID:5710608;gbkey=CDS;product=auxin efflux carrier;protein_id=YP_001532264.1;transl_table=11
NC_009952.1	RefSeq	gene	943401	944207	.	-	.	ID=gene935;Name=Dshi_0919;Dbxref=GeneID:5710609;gbkey=Gene;locus_tag=Dshi_0919
NC_009952.1	RefSeq	CDS	943401	944207	.	-	0	ID=cds916;Name=YP_001532265.1;Parent=gene935;Note=Metallo-beta-lactamase superfamily%2C apart from the beta-lactamases a number of other proteins contain this domain;Dbxref=Genbank:YP_001532265.1,GeneID:5710609;gbkey=CDS;product=beta-lactamase domain-containing protein;protein_id=YP_001532265.1;transl_table=11
NC_009952.1	RefSeq	gene	944204	945013	.	-	.	ID=gene936;Name=Dshi_0920;Dbxref=GeneID:5710610;gbkey=Gene;locus_tag=Dshi_0920
NC_009952.1	RefSeq	CDS	944204	945013	.	-	0	ID=cds917;Name=YP_001532266.1;Parent=gene936;Note=related to a large superfamily of metalloenzymes%2C TatD%2C a member of this family has been shown experimentally to be a DNase enzyme%3B TatD family;Dbxref=Genbank:YP_001532266.1,GeneID:5710610;gbkey=CDS;product=hydrolase;protein_id=YP_001532266.1;transl_table=11
NC_009952.1	RefSeq	gene	945036	946181	.	-	.	ID=gene937;Name=Dshi_0921;Dbxref=GeneID:5710611;gbkey=Gene;locus_tag=Dshi_0921
NC_009952.1	RefSeq	CDS	945036	946181	.	-	0	ID=cds918;Name=YP_001532267.1;Parent=gene937;Note=catalyzes the DNA-template-directed extension of the 3%27-end of a DNA strand%3B the delta%27 subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA;Dbxref=Genbank:YP_001532267.1,GeneID:5710611;gbkey=CDS;product=DNA polymerase III subunit delta%27;protein_id=YP_001532267.1;transl_table=11
NC_009952.1	RefSeq	gene	946178	946801	.	-	.	ID=gene938;Name=tmk;Dbxref=GeneID:5710612;gbkey=Gene;gene=tmk;locus_tag=Dshi_0922
NC_009952.1	RefSeq	CDS	946178	946801	.	-	0	ID=cds919;Name=YP_001532268.1;Parent=gene938;Note=Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis%2C Reaction: ATP %2B dTMP %3C%3D%3E ADP %2B dTDP;Dbxref=Genbank:YP_001532268.1,GeneID:5710612;gbkey=CDS;gene=tmk;product=dTMP kinase;protein_id=YP_001532268.1;transl_table=11
NC_009952.1	RefSeq	gene	946801	947982	.	-	.	ID=gene939;Name=dacC1;Dbxref=GeneID:5710613;gbkey=Gene;gene=dacC1;locus_tag=Dshi_0923
NC_009952.1	RefSeq	CDS	946801	947982	.	-	0	ID=cds920;Name=YP_001532269.1;Parent=gene939;Note=Removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors%2C Preferential cleavage: %28Ac%292-L-Lys-D-Ala-D-Ala;Dbxref=Genbank:YP_001532269.1,GeneID:5710613;gbkey=CDS;gene=dacC1;product=serine-type D-Ala-D-Ala carboxypeptidase;protein_id=YP_001532269.1;transl_table=11
NC_009952.1	RefSeq	gene	947994	948800	.	-	.	ID=gene940;Name=Dshi_0924;Dbxref=GeneID:5710614;gbkey=Gene;locus_tag=Dshi_0924
NC_009952.1	RefSeq	CDS	947994	948800	.	-	0	ID=cds921;Name=YP_001532270.1;Parent=gene940;Note=contains SPOR domain%2C involved in binding peptidoglycan;Dbxref=Genbank:YP_001532270.1,GeneID:5710614;gbkey=CDS;product=sporulation domain-containing protein;protein_id=YP_001532270.1;transl_table=11
NC_009952.1	RefSeq	gene	949041	949130	.	+	.	ID=gene941;Name=Dshi_6020;Dbxref=GeneID:5710615;gbkey=Gene;locus_tag=Dshi_6020
NC_009952.1	RefSeq	tRNA	949041	949130	.	+	.	ID=rna19;Parent=gene941;Dbxref=GeneID:5710615;codons=6;gbkey=tRNA;product=tRNA-Ser
NC_009952.1	RefSeq	exon	949041	949130	.	+	.	ID=id22;Parent=rna19;Dbxref=GeneID:5710615;codons=6;gbkey=tRNA;product=tRNA-Ser
NC_009952.1	RefSeq	gene	949418	949618	.	+	.	ID=gene942;Name=Dshi_0925;Dbxref=GeneID:5710616;gbkey=Gene;locus_tag=Dshi_0925
NC_009952.1	RefSeq	CDS	949418	949618	.	+	0	ID=cds922;Name=YP_001532271.1;Parent=gene942;Note=weak conservation;Dbxref=Genbank:YP_001532271.1,GeneID:5710616;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532271.1;transl_table=11
NC_009952.1	RefSeq	gene	949670	950479	.	-	.	ID=gene943;Name=Dshi_0926;Dbxref=GeneID:5710617;gbkey=Gene;locus_tag=Dshi_0926
NC_009952.1	RefSeq	CDS	949670	950479	.	-	0	ID=cds923;Name=YP_001532272.1;Parent=gene943;Dbxref=Genbank:YP_001532272.1,GeneID:5710617;gbkey=CDS;product=integrase catalytic subunit;protein_id=YP_001532272.1;transl_table=11
NC_009952.1	RefSeq	gene	950503	950730	.	-	.	ID=gene944;Name=Dshi_0927;Dbxref=GeneID:5710618;gbkey=Gene;locus_tag=Dshi_0927
NC_009952.1	RefSeq	CDS	950503	950730	.	-	0	ID=cds924;Name=YP_001532273.1;Parent=gene944;Dbxref=Genbank:YP_001532273.1,GeneID:5710618;gbkey=CDS;product=transposase IS3%2FIS911 family protein;protein_id=YP_001532273.1;transl_table=11
NC_009952.1	RefSeq	gene	950829	951632	.	-	.	ID=gene945;Name=Dshi_0928;Dbxref=GeneID:5710619;gbkey=Gene;locus_tag=Dshi_0928
NC_009952.1	RefSeq	CDS	950829	951632	.	-	0	ID=cds925;Name=YP_001532274.1;Parent=gene945;Note=inner membrane protein;Dbxref=Genbank:YP_001532274.1,GeneID:5710619;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532274.1;transl_table=11
NC_009952.1	RefSeq	gene	952573	953553	.	-	.	ID=gene946;Name=Dshi_0929;Dbxref=GeneID:5710620;gbkey=Gene;locus_tag=Dshi_0929
NC_009952.1	RefSeq	CDS	952573	953553	.	-	0	ID=cds926;Name=YP_001532275.1;Parent=gene946;Note=contains 2 UspA domains%2C expression is enhanced when the cell is exposed to stress agents%2C enhances the rate of cell survival during prolonged exposure to such conditions;Dbxref=Genbank:YP_001532275.1,GeneID:5710620;gbkey=CDS;product=UspA domain-containing protein;protein_id=YP_001532275.1;transl_table=11
NC_009952.1	RefSeq	gene	953550	955277	.	-	.	ID=gene947;Name=Dshi_0930;Dbxref=GeneID:5710621;gbkey=Gene;locus_tag=Dshi_0930
NC_009952.1	RefSeq	CDS	953550	955277	.	-	0	ID=cds927;Name=YP_001532276.1;Parent=gene947;Note=Na%2FH antiporters are key transporters in maintaining the pH of actively metabolising cells;Dbxref=Genbank:YP_001532276.1,GeneID:5710621;gbkey=CDS;product=sodium%2Fhydrogen exchanger;protein_id=YP_001532276.1;transl_table=11
NC_009952.1	RefSeq	gene	955308	956327	.	-	.	ID=gene948;Name=adhA;Dbxref=GeneID:5710622;gbkey=Gene;gene=adhA;locus_tag=Dshi_0931
NC_009952.1	RefSeq	CDS	955308	956327	.	-	0	ID=cds928;Name=YP_001532277.1;Parent=gene948;Note=zinc-containing alcohol dehydrogenase family%2C Reaction: An alcohol %2B NAD%2B %3C%3D%3E an aldehyde or ketone %2B NADH;Dbxref=Genbank:YP_001532277.1,GeneID:5710622;gbkey=CDS;gene=adhA;product=alcohol dehydrogenase GroES domain-containing protein;protein_id=YP_001532277.1;transl_table=11
NC_009952.1	RefSeq	gene	956341	959109	.	-	.	ID=gene949;Name=Dshi_0932;Dbxref=GeneID:5710623;gbkey=Gene;locus_tag=Dshi_0932
NC_009952.1	RefSeq	CDS	956341	959109	.	-	0	ID=cds929;Name=YP_001532278.1;Parent=gene949;Note=members of this ATPase-family are involved in Na%2B%2FK%2B%2C H%2B%2FK%2B%2C Ca%2B%2B and Mg%2B%2B transport%3B P-type %28transporting%29%2C HAD superfamily%2C subfamily IC;Dbxref=Genbank:YP_001532278.1,GeneID:5710623;gbkey=CDS;product=ATPase;protein_id=YP_001532278.1;transl_table=11
NC_009952.1	RefSeq	gene	959106	959327	.	-	.	ID=gene950;Name=Dshi_0933;Dbxref=GeneID:5710624;gbkey=Gene;locus_tag=Dshi_0933
NC_009952.1	RefSeq	CDS	959106	959327	.	-	0	ID=cds930;Name=YP_001532279.1;Parent=gene950;Note=weak evidence for function as DNA binding domain%2C excisionase family%3B excisionase family;Dbxref=Genbank:YP_001532279.1,GeneID:5710624;gbkey=CDS;product=DNA-binding domain-containing protein;protein_id=YP_001532279.1;transl_table=11
NC_009952.1	RefSeq	gene	959824	960150	.	+	.	ID=gene951;Name=Dshi_0934;Dbxref=GeneID:5710625;gbkey=Gene;locus_tag=Dshi_0934
NC_009952.1	RefSeq	CDS	959824	960150	.	+	0	ID=cds931;Name=YP_001532280.1;Parent=gene951;Dbxref=Genbank:YP_001532280.1,GeneID:5710625;gbkey=CDS;product=transposase IS3%2FIS911 family protein;protein_id=YP_001532280.1;transl_table=11
NC_009952.1	RefSeq	gene	960258	960719	.	-	.	ID=gene952;Name=Dshi_0935;Dbxref=GeneID:5710626;gbkey=Gene;locus_tag=Dshi_0935
NC_009952.1	RefSeq	CDS	960258	960719	.	-	0	ID=cds932;Name=YP_001532281.1;Parent=gene952;Dbxref=Genbank:YP_001532281.1,GeneID:5710626;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532281.1;transl_table=11
NC_009952.1	RefSeq	gene	960784	963285	.	-	.	ID=gene953;Name=Dshi_0936;Dbxref=GeneID:5710627;gbkey=Gene;locus_tag=Dshi_0936
NC_009952.1	RefSeq	CDS	960784	963285	.	-	0	ID=cds933;Name=YP_001532282.1;Parent=gene953;Note=exported or inner-membrane bound%2C catalyzes hydrolization of sulfate from organic compounds;Dbxref=Genbank:YP_001532282.1,GeneID:5710627;gbkey=CDS;product=sulfatase;protein_id=YP_001532282.1;transl_table=11
NC_009952.1	RefSeq	gene	963377	964288	.	-	.	ID=gene954;Name=Dshi_0937;Dbxref=GeneID:5710628;gbkey=Gene;locus_tag=Dshi_0937
NC_009952.1	RefSeq	CDS	963377	964288	.	-	0	ID=cds934;Name=YP_001532283.1;Parent=gene954;Dbxref=Genbank:YP_001532283.1,GeneID:5710628;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532283.1;transl_table=11
NC_009952.1	RefSeq	gene	964490	965500	.	+	.	ID=gene955;Name=Dshi_0938;Dbxref=GeneID:5710629;gbkey=Gene;locus_tag=Dshi_0938
NC_009952.1	RefSeq	CDS	964490	965500	.	+	0	ID=cds935;Name=YP_001532284.1;Parent=gene955;Note=helix-turn-helix DNA-binding motif%3B AraC family;Dbxref=Genbank:YP_001532284.1,GeneID:5710629;gbkey=CDS;product=transcriptional regulator;protein_id=YP_001532284.1;transl_table=11
NC_009952.1	RefSeq	gene	965791	965877	.	-	.	ID=gene956;Name=Dshi_0939;Dbxref=GeneID:5710630;gbkey=Gene;locus_tag=Dshi_0939
NC_009952.1	RefSeq	CDS	965791	965877	.	-	0	ID=cds936;Name=YP_001532285.1;Parent=gene956;Note=28aa of a transposase orfA IS5 family element %28normally about 100-120aa%29;Dbxref=Genbank:YP_001532285.1,GeneID:5710630;gbkey=CDS;product=transposase orfA IS5 family element;protein_id=YP_001532285.1;transl_table=11
NC_009952.1	RefSeq	gene	965987	966301	.	+	.	ID=gene957;Name=Dshi_0940;Dbxref=GeneID:5710631;gbkey=Gene;locus_tag=Dshi_0940
NC_009952.1	RefSeq	CDS	965987	966301	.	+	0	ID=cds937;Name=YP_001532286.1;Parent=gene957;Dbxref=Genbank:YP_001532286.1,GeneID:5710631;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532286.1;transl_table=11
NC_009952.1	RefSeq	gene	966631	967482	.	+	.	ID=gene958;Name=Dshi_0941;Dbxref=GeneID:5710632;gbkey=Gene;locus_tag=Dshi_0941
NC_009952.1	RefSeq	CDS	966631	967482	.	+	0	ID=cds938;Name=YP_001532287.1;Parent=gene958;Dbxref=Genbank:YP_001532287.1,GeneID:5710632;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532287.1;transl_table=11
NC_009952.1	RefSeq	gene	967479	968444	.	+	.	ID=gene959;Name=Dshi_0942;Dbxref=GeneID:5710633;gbkey=Gene;locus_tag=Dshi_0942
NC_009952.1	RefSeq	CDS	967479	968444	.	+	0	ID=cds939;Name=YP_001532288.1;Parent=gene959;Note=Members of the M23 peptidase family are zinc-metallopeptidases%2C most are endopeptidases%2C inner membrane location: possible function as cell wall peptidase;Dbxref=Genbank:YP_001532288.1,GeneID:5710633;gbkey=CDS;product=peptidase M23B;protein_id=YP_001532288.1;transl_table=11
NC_009952.1	RefSeq	gene	968525	969388	.	-	.	ID=gene960;Name=Dshi_0943;Dbxref=GeneID:5710634;gbkey=Gene;locus_tag=Dshi_0943
NC_009952.1	RefSeq	CDS	968525	969388	.	-	0	ID=cds940;Name=YP_001532289.1;Parent=gene960;Note=contains CAAX amino terminal protease domain;Dbxref=Genbank:YP_001532289.1,GeneID:5710634;gbkey=CDS;product=abortive infection protein;protein_id=YP_001532289.1;transl_table=11
NC_009952.1	RefSeq	gene	969742	970260	.	-	.	ID=gene961;Name=Dshi_0944;Dbxref=GeneID:5710635;gbkey=Gene;locus_tag=Dshi_0944
NC_009952.1	RefSeq	CDS	969742	970260	.	-	0	ID=cds941;Name=YP_001532290.1;Parent=gene961;Note=putative transmembrane protein %28PSORT%29;Dbxref=Genbank:YP_001532290.1,GeneID:5710635;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532290.1;transl_table=11
NC_009952.1	RefSeq	gene	970257	971039	.	-	.	ID=gene962;Name=Dshi_0945;Dbxref=GeneID:5710636;gbkey=Gene;locus_tag=Dshi_0945
NC_009952.1	RefSeq	CDS	970257	971039	.	-	0	ID=cds942;Name=YP_001532291.1;Parent=gene962;Note=contains C-terminal putative peptidoglycan-binding domain%2C found in metalloproteases%2C N-terminus not characterized;Dbxref=Genbank:YP_001532291.1,GeneID:5710636;gbkey=CDS;product=peptidoglycan-binding domain 1 protein;protein_id=YP_001532291.1;transl_table=11
NC_009952.1	RefSeq	gene	971323	971721	.	-	.	ID=gene963;Name=Dshi_0946;Dbxref=GeneID:5710637;gbkey=Gene;locus_tag=Dshi_0946
NC_009952.1	RefSeq	CDS	971323	971721	.	-	0	ID=cds943;Name=YP_001532292.1;Parent=gene963;Note=conserved in bacteria;Dbxref=Genbank:YP_001532292.1,GeneID:5710637;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532292.1;transl_table=11
NC_009952.1	RefSeq	gene	971779	972486	.	-	.	ID=gene964;Name=pthA;Dbxref=GeneID:5710638;gbkey=Gene;gene=pthA;locus_tag=Dshi_0947
NC_009952.1	RefSeq	CDS	971779	972486	.	-	0	ID=cds944;Name=YP_001532293.1;Parent=gene964;Note=Enables the recycling of peptidyl-tRNAs produced at termination of translation;Dbxref=Genbank:YP_001532293.1,GeneID:5710638;gbkey=CDS;gene=pthA;product=peptidyl-tRNA hydrolase;protein_id=YP_001532293.1;transl_table=11
NC_009952.1	RefSeq	gene	972616	973788	.	+	.	ID=gene965;Name=lldD2;Dbxref=GeneID:5710639;gbkey=Gene;gene=lldD2;locus_tag=Dshi_0948
NC_009952.1	RefSeq	CDS	972616	973788	.	+	0	ID=cds945;Name=YP_001532294.1;Parent=gene965;Note=FMN-dependent dehydrogenase%2C Reaction: %28S%29-lactate %2B 2 ferricytochrome c %3C%3D%3E pyruvate %2B 2 ferrocytochrome c %2B 2 H%2B%3B cytochrome;Dbxref=Genbank:YP_001532294.1,GeneID:5710639;gbkey=CDS;gene=lldD2;product=L-lactate dehydrogenase;protein_id=YP_001532294.1;transl_table=11
NC_009952.1	RefSeq	gene	973840	974457	.	+	.	ID=gene966;Name=Dshi_0949;Dbxref=GeneID:5710640;gbkey=Gene;locus_tag=Dshi_0949
NC_009952.1	RefSeq	CDS	973840	974457	.	+	0	ID=cds946;Name=YP_001532295.1;Parent=gene966;Dbxref=Genbank:YP_001532295.1,GeneID:5710640;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532295.1;transl_table=11
NC_009952.1	RefSeq	gene	974567	975202	.	+	.	ID=gene967;Name=rplY;Dbxref=GeneID:5710641;gbkey=Gene;gene=rplY;locus_tag=Dshi_0950
NC_009952.1	RefSeq	CDS	974567	975202	.	+	0	ID=cds947;Name=YP_001532296.1;Parent=gene967;Note=the Ctc family of proteins consists of two types%2C one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response;Dbxref=Genbank:YP_001532296.1,GeneID:5710641;gbkey=CDS;gene=rplY;product=50S ribosomal protein L25%2Fgeneral stress protein Ctc;protein_id=YP_001532296.1;transl_table=11
NC_009952.1	RefSeq	gene	975412	975882	.	-	.	ID=gene968;Name=Dshi_0951;Dbxref=GeneID:5710642;gbkey=Gene;locus_tag=Dshi_0951
NC_009952.1	RefSeq	CDS	975412	975882	.	-	0	ID=cds948;Name=YP_001532297.1;Parent=gene968;Dbxref=Genbank:YP_001532297.1,GeneID:5710642;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532297.1;transl_table=11
NC_009952.1	RefSeq	gene	976376	977194	.	-	.	ID=gene969;Name=trpA;Dbxref=GeneID:5710643;gbkey=Gene;gene=trpA;locus_tag=Dshi_0952
NC_009952.1	RefSeq	CDS	976376	977194	.	-	0	ID=cds949;Name=YP_001532298.1;Parent=gene969;Note=catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis;Dbxref=Genbank:YP_001532298.1,GeneID:5710643;gbkey=CDS;gene=trpA;product=tryptophan synthase subunit alpha;protein_id=YP_001532298.1;transl_table=11
NC_009952.1	RefSeq	gene	977230	978582	.	-	.	ID=gene970;Name=Dshi_0953;Dbxref=GeneID:5710644;gbkey=Gene;locus_tag=Dshi_0953
NC_009952.1	RefSeq	CDS	977230	978582	.	-	0	ID=cds950;Name=YP_001532299.1;Parent=gene970;Note=contains two multi antimicrobial extrusion %28MATE%29 domains%2C drug%2Fsodium antiporter;Dbxref=Genbank:YP_001532299.1,GeneID:5710644;gbkey=CDS;product=MATE efflux family protein;protein_id=YP_001532299.1;transl_table=11
NC_009952.1	RefSeq	gene	978833	979930	.	+	.	ID=gene971;Name=engD;Dbxref=GeneID:5710645;gbkey=Gene;gene=engD;locus_tag=Dshi_0954
NC_009952.1	RefSeq	CDS	978833	979930	.	+	0	ID=cds951;Name=YP_001532300.1;Parent=gene971;Note=translation-associated GTPase%3B the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure %28PDB: 1NI3%29%3B fluorescence spectroscopy revealed nucleic acid binding%3B the yeast protein YBR025c interacts with the translation elongation factor eEF1;Dbxref=Genbank:YP_001532300.1,GeneID:5710645;gbkey=CDS;gene=engD;product=GTP-dependent nucleic acid-binding protein EngD;protein_id=YP_001532300.1;transl_table=11
NC_009952.1	RefSeq	gene	979967	980662	.	-	.	ID=gene972;Name=Dshi_0955;Dbxref=GeneID:5710646;gbkey=Gene;locus_tag=Dshi_0955
NC_009952.1	RefSeq	CDS	979967	980662	.	-	0	ID=cds952;Name=YP_001532301.1;Parent=gene972;Note=similar to predicted racemases;Dbxref=Genbank:YP_001532301.1,GeneID:5710646;gbkey=CDS;product=hydantoin racemase;protein_id=YP_001532301.1;transl_table=11
NC_009952.1	RefSeq	gene	980662	981948	.	-	.	ID=gene973;Name=Dshi_0956;Dbxref=GeneID:5710647;gbkey=Gene;locus_tag=Dshi_0956
NC_009952.1	RefSeq	CDS	980662	981948	.	-	0	ID=cds953;Name=YP_001532302.1;Parent=gene973;Note=TRAP gene cluster - dctPQM%3B DctM subunit;Dbxref=Genbank:YP_001532302.1,GeneID:5710647;gbkey=CDS;product=TRAP dicarboxylate transporter;protein_id=YP_001532302.1;transl_table=11
NC_009952.1	RefSeq	gene	981948	982469	.	-	.	ID=gene974;Name=Dshi_0957;Dbxref=GeneID:5710648;gbkey=Gene;locus_tag=Dshi_0957
NC_009952.1	RefSeq	CDS	981948	982469	.	-	0	ID=cds954;Name=YP_001532303.1;Parent=gene974;Note=TRAP gene cluster - dctPQM;Dbxref=Genbank:YP_001532303.1,GeneID:5710648;gbkey=CDS;product=tripartite ATP-independent periplasmic transporter subunit DctQ;protein_id=YP_001532303.1;transl_table=11
NC_009952.1	RefSeq	gene	982492	983472	.	-	.	ID=gene975;Name=Dshi_0958;Dbxref=GeneID:5710649;gbkey=Gene;locus_tag=Dshi_0958
NC_009952.1	RefSeq	CDS	982492	983472	.	-	0	ID=cds955;Name=YP_001532304.1;Parent=gene975;Note=TRAP gene cluster - dctPQM%3B DctP subunit;Dbxref=Genbank:YP_001532304.1,GeneID:5710649;gbkey=CDS;product=TRAP dicarboxylate transporter;protein_id=YP_001532304.1;transl_table=11
NC_009952.1	RefSeq	gene	983690	984535	.	-	.	ID=gene976;Name=Dshi_0959;Dbxref=GeneID:5710650;gbkey=Gene;locus_tag=Dshi_0959
NC_009952.1	RefSeq	CDS	983690	984535	.	-	0	ID=cds956;Name=YP_001532305.1;Parent=gene976;Note=helix-turn-helix DNA-binding motif%2C SIS domain%2C found in proteins that regulate the expression of genes involved in synthesis of phosphosugars%3B RpiR family;Dbxref=Genbank:YP_001532305.1,GeneID:5710650;gbkey=CDS;product=transcriptional regulator;protein_id=YP_001532305.1;transl_table=11
NC_009952.1	RefSeq	gene	984738	985418	.	+	.	ID=gene977;Name=Dshi_0960;Dbxref=GeneID:5710651;gbkey=Gene;locus_tag=Dshi_0960
NC_009952.1	RefSeq	CDS	984738	985418	.	+	0	ID=cds957;Name=YP_001532306.1;Parent=gene977;Note=N-terminal HTH region%2C C-terminal FCD effector binding domain%3B GntR family;Dbxref=Genbank:YP_001532306.1,GeneID:5710651;gbkey=CDS;product=transcriptional regulator;protein_id=YP_001532306.1;transl_table=11
NC_009952.1	RefSeq	gene	985534	986037	.	-	.	ID=gene978;Name=Dshi_0961;Dbxref=GeneID:5710652;gbkey=Gene;locus_tag=Dshi_0961
NC_009952.1	RefSeq	CDS	985534	986037	.	-	0	ID=cds958;Name=YP_001532307.1;Parent=gene978;Note=C-terminal domain is missing%2C probable pseudogene;Dbxref=Genbank:YP_001532307.1,GeneID:5710652;gbkey=CDS;product=catechol dioxygenase domain-containing protein;protein_id=YP_001532307.1;transl_table=11
NC_009952.1	RefSeq	gene	987364	987915	.	-	.	ID=gene979;Name=Dshi_0964;Dbxref=GeneID:5710655;gbkey=Gene;locus_tag=Dshi_0964
NC_009952.1	RefSeq	CDS	987364	987915	.	-	0	ID=cds959;Name=YP_001532308.1;Parent=gene979;Dbxref=Genbank:YP_001532308.1,GeneID:5710655;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532308.1;transl_table=11
NC_009952.1	RefSeq	gene	988027	988380	.	-	.	ID=gene980;Name=Dshi_0965;Dbxref=GeneID:5710656;gbkey=Gene;locus_tag=Dshi_0965
NC_009952.1	RefSeq	CDS	988027	988380	.	-	0	ID=cds960;Name=YP_001532309.1;Parent=gene980;Dbxref=Genbank:YP_001532309.1,GeneID:5710656;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532309.1;transl_table=11
NC_009952.1	RefSeq	gene	989049	989933	.	-	.	ID=gene981;Name=Dshi_0967;Dbxref=GeneID:5710658;gbkey=Gene;locus_tag=Dshi_0967
NC_009952.1	RefSeq	CDS	989049	989933	.	-	0	ID=cds961;Name=YP_001532310.1;Parent=gene981;Note=FAA is the last enzyme in the tyrosine catabolic pathway;Dbxref=Genbank:YP_001532310.1,GeneID:5710658;gbkey=CDS;product=fumarylacetoacetate %28FAA%29 hydrolase;protein_id=YP_001532310.1;transl_table=11
NC_009952.1	RefSeq	gene	990030	990485	.	+	.	ID=gene982;Name=Dshi_0968;Dbxref=GeneID:5710481;gbkey=Gene;locus_tag=Dshi_0968
NC_009952.1	RefSeq	CDS	990030	990485	.	+	0	ID=cds962;Name=YP_001532311.1;Parent=gene982;Note=The majority of proteins in this family consist of a single copy of this domain%2C though it is also found as a repeat;Dbxref=Genbank:YP_001532311.1,GeneID:5710481;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532311.1;transl_table=11
NC_009952.1	RefSeq	gene	990448	991947	.	-	.	ID=gene983;Name=mtlK;Dbxref=GeneID:5710482;gbkey=Gene;gene=mtlK;locus_tag=Dshi_0969
NC_009952.1	RefSeq	CDS	990448	991947	.	-	0	ID=cds963;Name=YP_001532312.1;Parent=gene983;Note=Reaction: D-mannitol %2B NAD%2B %3C%3D%3E D-fructose %2B NADH;Dbxref=Genbank:YP_001532312.1,GeneID:5710482;gbkey=CDS;gene=mtlK;product=mannitol dehydrogenase domain-containing protein;protein_id=YP_001532312.1;transl_table=11
NC_009952.1	RefSeq	gene	991935	992426	.	-	.	ID=gene984;Name=mtlK;Dbxref=GeneID:5710483;gbkey=Gene;gene=mtlK;locus_tag=Dshi_0970
NC_009952.1	RefSeq	CDS	991935	992426	.	-	0	ID=cds964;Name=YP_001532313.1;Parent=gene984;Note=N-terminal truncated;Dbxref=Genbank:YP_001532313.1,GeneID:5710483;gbkey=CDS;product=short-chain dehydrogenase%2Freductase SDR;protein_id=YP_001532313.1;transl_table=11
NC_009952.1	RefSeq	gene	992438	993442	.	-	.	ID=gene985;Name=Dshi_0971;Dbxref=GeneID:5710484;gbkey=Gene;locus_tag=Dshi_0971
NC_009952.1	RefSeq	CDS	992438	993442	.	-	0	ID=cds965;Name=YP_001532314.1;Parent=gene985;Note=ABC transporter %28importer%29 gene cluster: 1st ATP binding cassette %28ABC%29 domain%3B part of a heterotetramer%2C no second ABC domain protein%2C single TOBE domain;Dbxref=Genbank:YP_001532314.1,GeneID:5710484;gbkey=CDS;product=ABC transporter-like protein;protein_id=YP_001532314.1;transl_table=11
NC_009952.1	RefSeq	gene	993455	994285	.	-	.	ID=gene986;Name=Dshi_0972;Dbxref=GeneID:5710485;gbkey=Gene;locus_tag=Dshi_0972
NC_009952.1	RefSeq	CDS	993455	994285	.	-	0	ID=cds966;Name=YP_001532315.1;Parent=gene986;Note=ABC transporter %28importer%29 gene cluster: 2nd membrane spanning domain %28MSD%29%3B part of a heterotetramer;Dbxref=Genbank:YP_001532315.1,GeneID:5710485;gbkey=CDS;product=binding-protein-dependent transport system inner membrane protein;protein_id=YP_001532315.1;transl_table=11
NC_009952.1	RefSeq	gene	994296	995162	.	-	.	ID=gene987;Name=Dshi_0973;Dbxref=GeneID:5710486;gbkey=Gene;locus_tag=Dshi_0973
NC_009952.1	RefSeq	CDS	994296	995162	.	-	0	ID=cds967;Name=YP_001532316.1;Parent=gene987;Note=ABC transporter %28importer%29 gene cluster: 1st membrane spanning domain %28MSD%29%3B part of a heterotetramer;Dbxref=Genbank:YP_001532316.1,GeneID:5710486;gbkey=CDS;product=binding-protein-dependent transport system inner membrane protein;protein_id=YP_001532316.1;transl_table=11
NC_009952.1	RefSeq	gene	995276	996583	.	-	.	ID=gene988;Name=Dshi_0974;Dbxref=GeneID:5710487;gbkey=Gene;locus_tag=Dshi_0974
NC_009952.1	RefSeq	CDS	995276	996583	.	-	0	ID=cds968;Name=YP_001532317.1;Parent=gene988;Note=ABC transporter %28importer%29 gene cluster: receptor;Dbxref=Genbank:YP_001532317.1,GeneID:5710487;gbkey=CDS;product=family 1 extracellular solute-binding protein;protein_id=YP_001532317.1;transl_table=11
NC_009952.1	RefSeq	gene	996698	997732	.	-	.	ID=gene989;Name=Dshi_0975;Dbxref=GeneID:5710488;gbkey=Gene;locus_tag=Dshi_0975
NC_009952.1	RefSeq	CDS	996698	997732	.	-	0	ID=cds969;Name=YP_001532318.1;Parent=gene989;Note=LacI family;Dbxref=Genbank:YP_001532318.1,GeneID:5710488;gbkey=CDS;product=transcriptional regulator;protein_id=YP_001532318.1;transl_table=11
NC_009952.1	RefSeq	gene	997950	998168	.	+	.	ID=gene990;Name=Dshi_0976;Dbxref=GeneID:5710489;gbkey=Gene;locus_tag=Dshi_0976
NC_009952.1	RefSeq	CDS	997950	998168	.	+	0	ID=cds970;Name=YP_001532319.1;Parent=gene990;Dbxref=Genbank:YP_001532319.1,GeneID:5710489;gbkey=CDS;product=resolvase-like protein;protein_id=YP_001532319.1;transl_table=11
NC_009952.1	RefSeq	gene	998366	998440	.	-	.	ID=gene991;Name=Dshi_6021;Dbxref=GeneID:5710490;gbkey=Gene;locus_tag=Dshi_6021
NC_009952.1	RefSeq	tRNA	998366	998440	.	-	.	ID=rna20;Parent=gene991;Dbxref=GeneID:5710490;codons=37;gbkey=tRNA;product=tRNA-Thr
NC_009952.1	RefSeq	exon	998366	998440	.	-	.	ID=id23;Parent=rna20;Dbxref=GeneID:5710490;codons=37;gbkey=tRNA;product=tRNA-Thr
NC_009952.1	RefSeq	gene	998735	1000003	.	+	.	ID=gene992;Name=murA;Dbxref=GeneID:5710491;gbkey=Gene;gene=murA;locus_tag=Dshi_0977
NC_009952.1	RefSeq	CDS	998735	1000003	.	+	0	ID=cds971;Name=YP_001532320.1;Parent=gene992;Note=adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation%3B gram-positive bacteria have 2 copies of MurA which are active;Dbxref=Genbank:YP_001532320.1,GeneID:5710491;gbkey=CDS;gene=murA;product=UDP-N-acetylglucosamine 1-carboxyvinyltransferase;protein_id=YP_001532320.1;transl_table=11
NC_009952.1	RefSeq	gene	1000000	1000476	.	+	.	ID=gene993;Name=murA;Dbxref=GeneID:5710492;gbkey=Gene;gene=murA;locus_tag=Dshi_0978
NC_009952.1	RefSeq	CDS	1000000	1000476	.	+	0	ID=cds972;Name=YP_001532321.1;Parent=gene993;Note=conserved in alphaproteobacteria;Dbxref=Genbank:YP_001532321.1,GeneID:5710492;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532321.1;transl_table=11
NC_009952.1	RefSeq	gene	1000537	1001853	.	+	.	ID=gene994;Name=hisD;Dbxref=GeneID:5710493;gbkey=Gene;gene=hisD;locus_tag=Dshi_0979
NC_009952.1	RefSeq	CDS	1000537	1001853	.	+	0	ID=cds973;Name=YP_001532322.1;Parent=gene994;Note=catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis%3B functions as a dimer;Dbxref=Genbank:YP_001532322.1,GeneID:5710493;gbkey=CDS;gene=hisD;product=histidinol dehydrogenase;protein_id=YP_001532322.1;transl_table=11
NC_009952.1	RefSeq	gene	1001850	1002329	.	+	.	ID=gene995;Name=hisD;Dbxref=GeneID:5710494;gbkey=Gene;gene=hisD;locus_tag=Dshi_0980
NC_009952.1	RefSeq	CDS	1001850	1002329	.	+	0	ID=cds974;Name=YP_001532323.1;Parent=gene995;Note=conserved uncharacterized protein;Dbxref=Genbank:YP_001532323.1,GeneID:5710494;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532323.1;transl_table=11
NC_009952.1	RefSeq	gene	1002333	1002788	.	+	.	ID=gene996;Name=Dshi_0981;Dbxref=GeneID:5710495;gbkey=Gene;locus_tag=Dshi_0981
NC_009952.1	RefSeq	CDS	1002333	1002788	.	+	0	ID=cds975;Name=YP_001532324.1;Parent=gene996;Note=function not clear%2C homology to protein tyrosine phosphatase and arsenate reductase;Dbxref=Genbank:YP_001532324.1,GeneID:5710495;gbkey=CDS;product=protein tyrosine phosphatase;protein_id=YP_001532324.1;transl_table=11
NC_009952.1	RefSeq	gene	1002938	1003156	.	+	.	ID=gene997;Name=infA;Dbxref=GeneID:5710496;gbkey=Gene;gene=infA;locus_tag=Dshi_0982
NC_009952.1	RefSeq	CDS	1002938	1003156	.	+	0	ID=cds976;Name=YP_001532325.1;Parent=gene997;Note=stimulates the activities of the other two initiation factors%2C IF-2 and IF-3;Dbxref=Genbank:YP_001532325.1,GeneID:5710496;gbkey=CDS;gene=infA;product=translation initiation factor IF-1;protein_id=YP_001532325.1;transl_table=11
NC_009952.1	RefSeq	gene	1003159	1003743	.	+	.	ID=gene998;Name=Dshi_0983;Dbxref=GeneID:5710497;gbkey=Gene;locus_tag=Dshi_0983
NC_009952.1	RefSeq	CDS	1003159	1003743	.	+	0	ID=cds977;Name=YP_001532326.1;Parent=gene998;Note=putative inhibitor of septum formation;Dbxref=Genbank:YP_001532326.1,GeneID:5710497;gbkey=CDS;product=maf protein;protein_id=YP_001532326.1;transl_table=11
NC_009952.1	RefSeq	gene	1003740	1004783	.	+	.	ID=gene999;Name=Dshi_0984;Dbxref=GeneID:5710498;gbkey=Gene;locus_tag=Dshi_0984
NC_009952.1	RefSeq	CDS	1003740	1004783	.	+	0	ID=cds978;Name=YP_001532327.1;Parent=gene999;Note=Ribonuclease G and E-like family;Dbxref=Genbank:YP_001532327.1,GeneID:5710498;gbkey=CDS;product=ribonuclease;protein_id=YP_001532327.1;transl_table=11
NC_009952.1	RefSeq	gene	1005076	1005150	.	+	.	ID=gene1000;Name=Dshi_6022;Dbxref=GeneID:5710499;gbkey=Gene;locus_tag=Dshi_6022
NC_009952.1	RefSeq	tRNA	1005076	1005150	.	+	.	ID=rna21;Parent=gene1000;Dbxref=GeneID:5710499;codons=1;gbkey=tRNA;product=tRNA-Phe
NC_009952.1	RefSeq	exon	1005076	1005150	.	+	.	ID=id24;Parent=rna21;Dbxref=GeneID:5710499;codons=1;gbkey=tRNA;product=tRNA-Phe
NC_009952.1	RefSeq	gene	1005574	1005831	.	-	.	ID=gene1001;Name=Dshi_0985;Dbxref=GeneID:5710500;gbkey=Gene;locus_tag=Dshi_0985
NC_009952.1	RefSeq	CDS	1005574	1005831	.	-	0	ID=cds979;Name=YP_001532328.1;Parent=gene1001;Dbxref=Genbank:YP_001532328.1,GeneID:5710500;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532328.1;transl_table=11
NC_009952.1	RefSeq	gene	1006009	1006383	.	-	.	ID=gene1002;Name=Dshi_0986;Dbxref=GeneID:5710501;gbkey=Gene;locus_tag=Dshi_0986
NC_009952.1	RefSeq	CDS	1006009	1006383	.	-	0	ID=cds980;Name=YP_001532329.1;Parent=gene1002;Note=DNA-binding%2C putative transcriptional regulator;Dbxref=Genbank:YP_001532329.1,GeneID:5710501;gbkey=CDS;product=helix-turn-helix domain-containing protein;protein_id=YP_001532329.1;transl_table=11
NC_009952.1	RefSeq	gene	1006380	1006733	.	-	.	ID=gene1003;Name=Dshi_0987;Dbxref=GeneID:5710502;gbkey=Gene;locus_tag=Dshi_0987
NC_009952.1	RefSeq	CDS	1006380	1006733	.	-	0	ID=cds981;Name=YP_001532330.1;Parent=gene1003;Note=conserved in bacteria;Dbxref=Genbank:YP_001532330.1,GeneID:5710502;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532330.1;transl_table=11
NC_009952.1	RefSeq	gene	1007057	1008169	.	-	.	ID=gene1004;Name=Dshi_0988;Dbxref=GeneID:5710503;gbkey=Gene;locus_tag=Dshi_0988
NC_009952.1	RefSeq	CDS	1007057	1008169	.	-	0	ID=cds982;Name=YP_001532331.1;Parent=gene1004;Note=Phage integrase proteins cleave DNA substrates by a series of staggered cuts%2C during which the protein becomes covalently linked to the DNA through a catalytic tyrosine residue at the carboxy end of the alignment;Dbxref=Genbank:YP_001532331.1,GeneID:5710503;gbkey=CDS;product=integrase family protein;protein_id=YP_001532331.1;transl_table=11
NC_009952.1	RefSeq	gene	1008195	1008434	.	-	.	ID=gene1005;Name=Dshi_0989;Dbxref=GeneID:5710504;gbkey=Gene;locus_tag=Dshi_0989
NC_009952.1	RefSeq	CDS	1008195	1008434	.	-	0	ID=cds983;Name=YP_001532332.1;Parent=gene1005;Dbxref=Genbank:YP_001532332.1,GeneID:5710504;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532332.1;transl_table=11
NC_009952.1	RefSeq	gene	1009203	1013882	.	-	.	ID=gene1006;Name=Dshi_0990;Dbxref=GeneID:5710505;gbkey=Gene;locus_tag=Dshi_0990
NC_009952.1	RefSeq	CDS	1009203	1013882	.	-	0	ID=cds984;Name=YP_001532333.1;Parent=gene1006;Dbxref=Genbank:YP_001532333.1,GeneID:5710505;gbkey=CDS;product=putative DNA helicase-like protein;protein_id=YP_001532333.1;transl_table=11
NC_009952.1	RefSeq	gene	1014095	1017562	.	-	.	ID=gene1007;Name=Dshi_0991;Dbxref=GeneID:5710506;gbkey=Gene;locus_tag=Dshi_0991
NC_009952.1	RefSeq	CDS	1014095	1017562	.	-	0	ID=cds985;Name=YP_001532334.1;Parent=gene1007;Dbxref=Genbank:YP_001532334.1,GeneID:5710506;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532334.1;transl_table=11
NC_009952.1	RefSeq	gene	1017620	1020436	.	-	.	ID=gene1008;Name=Dshi_0992;Dbxref=GeneID:5710507;gbkey=Gene;locus_tag=Dshi_0992
NC_009952.1	RefSeq	CDS	1017620	1020436	.	-	0	ID=cds986;Name=YP_001532335.1;Parent=gene1008;Note=protects the organism against invading foreign DNA%2C part of a heteromeric enzyme complex%2C mod %28modification methyltransferase%29subunit is missing;Dbxref=Genbank:YP_001532335.1,GeneID:5710507;gbkey=CDS;product=type III restriction protein res subunit;protein_id=YP_001532335.1;transl_table=11
NC_009952.1	RefSeq	gene	1021732	1021821	.	-	.	ID=gene1009;Name=Dshi_6023;Dbxref=GeneID:5710508;gbkey=Gene;locus_tag=Dshi_6023
NC_009952.1	RefSeq	tRNA	1021732	1021821	.	-	.	ID=rna22;Parent=gene1009;Dbxref=GeneID:5710508;codons=45;gbkey=tRNA;product=tRNA-Ser
NC_009952.1	RefSeq	exon	1021732	1021821	.	-	.	ID=id25;Parent=rna22;Dbxref=GeneID:5710508;codons=45;gbkey=tRNA;product=tRNA-Ser
NC_009952.1	RefSeq	gene	1022112	1023083	.	+	.	ID=gene1010;Name=Dshi_0993;Dbxref=GeneID:5710509;gbkey=Gene;locus_tag=Dshi_0993
NC_009952.1	RefSeq	CDS	1022112	1023083	.	+	0	ID=cds987;Name=YP_001532336.1;Parent=gene1010;Note=TRAP gene cluster - dctPQM%3B TAXI family;Dbxref=Genbank:YP_001532336.1,GeneID:5710509;gbkey=CDS;product=TRAP transporter solute receptor;protein_id=YP_001532336.1;transl_table=11
NC_009952.1	RefSeq	gene	1023150	1025069	.	+	.	ID=gene1011;Name=Dshi_0994;Dbxref=GeneID:5710510;gbkey=Gene;locus_tag=Dshi_0994
NC_009952.1	RefSeq	CDS	1023150	1025069	.	+	0	ID=cds988;Name=YP_001532337.1;Parent=gene1011;Note=TRAP gene cluster - dctPQM%3B 4TM%2F12TM fusion protein;Dbxref=Genbank:YP_001532337.1,GeneID:5710510;gbkey=CDS;product=TRAP transporter;protein_id=YP_001532337.1;transl_table=11
NC_009952.1	RefSeq	gene	1025066	1025971	.	-	.	ID=gene1012;Name=Dshi_0995;Dbxref=GeneID:5710511;gbkey=Gene;locus_tag=Dshi_0995
NC_009952.1	RefSeq	CDS	1025066	1025971	.	-	0	ID=cds989;Name=YP_001532338.1;Parent=gene1012;Note=contains substrate binding domain%2C putative homotetramer%3B LysR family;Dbxref=Genbank:YP_001532338.1,GeneID:5710511;gbkey=CDS;product=transcriptional regulator;protein_id=YP_001532338.1;transl_table=11
NC_009952.1	RefSeq	gene	1026072	1027577	.	+	.	ID=gene1013;Name=Dshi_0996;Dbxref=GeneID:5710512;gbkey=Gene;locus_tag=Dshi_0996
NC_009952.1	RefSeq	CDS	1026072	1027577	.	+	0	ID=cds990;Name=YP_001532339.1;Parent=gene1013;Note=subunit of NADH dehydrogenase%2C electron transport chain%28ETC%29 complex I;Dbxref=Genbank:YP_001532339.1,GeneID:5710512;gbkey=CDS;product=NADH%2FUbiquinone%2Fplastoquinone;protein_id=YP_001532339.1;transl_table=11
NC_009952.1	RefSeq	gene	1027607	1029982	.	+	.	ID=gene1014;Name=Dshi_0997;Dbxref=GeneID:5710513;gbkey=Gene;locus_tag=Dshi_0997
NC_009952.1	RefSeq	CDS	1027607	1029982	.	+	0	ID=cds991;Name=YP_001532340.1;Parent=gene1014;Note=putative inner membrane protein;Dbxref=Genbank:YP_001532340.1,GeneID:5710513;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532340.1;transl_table=11
NC_009952.1	RefSeq	gene	1030013	1031707	.	-	.	ID=gene1015;Name=ade;Dbxref=GeneID:5710514;gbkey=Gene;gene=ade;locus_tag=Dshi_0998
NC_009952.1	RefSeq	CDS	1030013	1031707	.	-	0	ID=cds992;Name=YP_001532341.1;Parent=gene1015;Note=Adenine deaminases reaction is important for adenine utilisation as a purine and also as a nitrogen source%2C Reaction: Adenine %2B H2O %3C%3D%3E hypoxanthine %2B NH3%2C Manganese dependent;Dbxref=Genbank:YP_001532341.1,GeneID:5710514;gbkey=CDS;gene=ade;product=adenine deaminase;protein_id=YP_001532341.1;transl_table=11
NC_009952.1	RefSeq	gene	1031760	1032641	.	-	.	ID=gene1016;Name=Dshi_0999;Dbxref=GeneID:5710515;gbkey=Gene;locus_tag=Dshi_0999
NC_009952.1	RefSeq	CDS	1031760	1032641	.	-	0	ID=cds993;Name=YP_001532342.1;Parent=gene1016;Note=found both in prokaryotes and eukaryotes%3B related to the human bile acid:sodium symporters%3B transmembrane proteins;Dbxref=Genbank:YP_001532342.1,GeneID:5710515;gbkey=CDS;product=bile acid:sodium symporter;protein_id=YP_001532342.1;transl_table=11
NC_009952.1	RefSeq	gene	1032645	1034366	.	-	.	ID=gene1017;Name=fadD4;Dbxref=GeneID:5710516;gbkey=Gene;gene=fadD4;locus_tag=Dshi_1000
NC_009952.1	RefSeq	CDS	1032645	1034366	.	-	0	ID=cds994;Name=YP_001532343.1;Parent=gene1017;Note=esterification and transport of exogeneous long chain fatty acids%2C Reaction: ATP %2B a long-chain carboxylic acid %2B CoA %3C%3D%3E AMP %2B diphosphate %2B an acyl-CoA;Dbxref=Genbank:YP_001532343.1,GeneID:5710516;gbkey=CDS;gene=fadD4;product=AMP-dependent synthetase and ligase;protein_id=YP_001532343.1;transl_table=11
NC_009952.1	RefSeq	gene	1034458	1035408	.	-	.	ID=gene1018;Name=serA2;Dbxref=GeneID:5710517;gbkey=Gene;gene=serA2;locus_tag=Dshi_1001
NC_009952.1	RefSeq	CDS	1034458	1035408	.	-	0	ID=cds995;Name=YP_001532344.1;Parent=gene1018;Note=NAD-binding%2C Reaction: 2-hydroxyglutarate %2B NAD%2B %3C%3D%3E 2-oxoglutarate %2B NADH;Dbxref=Genbank:YP_001532344.1,GeneID:5710517;gbkey=CDS;gene=serA2;product=D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding subunit;protein_id=YP_001532344.1;transl_table=11
NC_009952.1	RefSeq	gene	1035541	1036683	.	-	.	ID=gene1019;Name=metB1;Dbxref=GeneID:5710518;gbkey=Gene;gene=metB1;locus_tag=Dshi_1002
NC_009952.1	RefSeq	CDS	1035541	1036683	.	-	0	ID=cds996;Name=YP_001532345.1;Parent=gene1019;Note=PLP-dependent enzyme%2C Methionine metabolism%2C Reaction: O4-succinyl-L-homoserine %2B L-cysteine %3C%3D%3E L-cystathionine %2B succinate;Dbxref=Genbank:YP_001532345.1,GeneID:5710518;gbkey=CDS;gene=metB1;product=cystathionine gamma-synthase;protein_id=YP_001532345.1;transl_table=11
NC_009952.1	RefSeq	gene	1036698	1037711	.	-	.	ID=gene1020;Name=Dshi_1003;Dbxref=GeneID:5710519;gbkey=Gene;locus_tag=Dshi_1003
NC_009952.1	RefSeq	CDS	1036698	1037711	.	-	0	ID=cds997;Name=YP_001532346.1;Parent=gene1020;Note=This family consists of bacterial antibiotic resistance proteins%2C which confer resistance to various aminoglycosides;Dbxref=Genbank:YP_001532346.1,GeneID:5710519;gbkey=CDS;product=aminoglycoside phosphotransferase;protein_id=YP_001532346.1;transl_table=11
NC_009952.1	RefSeq	gene	1037708	1038925	.	-	.	ID=gene1021;Name=Dshi_1004;Dbxref=GeneID:5710520;gbkey=Gene;locus_tag=Dshi_1004
NC_009952.1	RefSeq	CDS	1037708	1038925	.	-	0	ID=cds998;Name=YP_001532347.1;Parent=gene1021;Note=contains middle and C-terminal domain%2C N-terminal domain not conserved;Dbxref=Genbank:YP_001532347.1,GeneID:5710520;gbkey=CDS;product=acyl-CoA dehydrogenase domain-containing protein;protein_id=YP_001532347.1;transl_table=11
NC_009952.1	RefSeq	gene	1039022	1039978	.	+	.	ID=gene1022;Name=Dshi_1005;Dbxref=GeneID:5710521;gbkey=Gene;locus_tag=Dshi_1005
NC_009952.1	RefSeq	CDS	1039022	1039978	.	+	0	ID=cds999;Name=YP_001532348.1;Parent=gene1022;Note=This family contains integral membrane proteins with 5 to 6 predicted transmembrane spans. The family include ribonuclease BN that is involved in tRNA maturation. This family of proteins does not seem to contain any completely conserved polar residues that would be expected in a nuclease enzyme%2C suggesting that many members of this family may not have this catalytic activity;Dbxref=Genbank:YP_001532348.1,GeneID:5710521;gbkey=CDS;product=putative ribonuclease BN;protein_id=YP_001532348.1;transl_table=11
NC_009952.1	RefSeq	gene	1039975	1041198	.	-	.	ID=gene1023;Name=Dshi_1006;Dbxref=GeneID:5710522;gbkey=Gene;locus_tag=Dshi_1006
NC_009952.1	RefSeq	CDS	1039975	1041198	.	-	0	ID=cds1000;Name=YP_001532349.1;Parent=gene1023;Note=The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients%2C similar to tetracycline resistence protein;Dbxref=Genbank:YP_001532349.1,GeneID:5710522;gbkey=CDS;product=major facilitator superfamily protein;protein_id=YP_001532349.1;transl_table=11
NC_009952.1	RefSeq	gene	1041475	1042281	.	-	.	ID=gene1024;Name=catD;Dbxref=GeneID:5710523;gbkey=Gene;gene=catD;locus_tag=Dshi_1007
NC_009952.1	RefSeq	CDS	1041475	1042281	.	-	0	ID=cds1001;Name=YP_001532350.1;Parent=gene1024;Note=Reaction: 3-oxoadipate enol-lactone %2B H2O %3D 3-oxoadipate;Dbxref=Genbank:YP_001532350.1,GeneID:5710523;gbkey=CDS;gene=catD;product=3-oxoadipate enol-lactonase;protein_id=YP_001532350.1;transl_table=11
NC_009952.1	RefSeq	gene	1042293	1043081	.	-	.	ID=gene1025;Name=fabI1;Dbxref=GeneID:5710524;gbkey=Gene;gene=fabI1;locus_tag=Dshi_1008
NC_009952.1	RefSeq	CDS	1042293	1043081	.	-	0	ID=cds1002;Name=YP_001532351.1;Parent=gene1025;Note=Substrate: acyl-carrier-protein %28ACP%29%2C Reaction: Acyl-ACP %2B NAD%2B %3D trans-2%2C3-dehydroacyl-ACP %2B NADH;Dbxref=Genbank:YP_001532351.1,GeneID:5710524;gbkey=CDS;gene=fabI1;product=enoyl-%28acyl-carrier-protein%29 reductase;protein_id=YP_001532351.1;transl_table=11
NC_009952.1	RefSeq	gene	1043106	1044335	.	-	.	ID=gene1026;Name=fabB;Dbxref=GeneID:5710525;gbkey=Gene;gene=fabB;locus_tag=Dshi_1009
NC_009952.1	RefSeq	CDS	1043106	1044335	.	-	0	ID=cds1003;Name=YP_001532352.1;Parent=gene1026;Note=Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Specific for elongation from C-10 to unsaturated C-16 and C-18 fatty acids%2C Substrate: acyl-carrier-protein %28ACP%29%2C Reaction: Acyl-ACP %2B malonyl-ACP %3C%3D%3E 3-oxoacyl-ACP %2B CO2 %2B ACP;Dbxref=Genbank:YP_001532352.1,GeneID:5710525;gbkey=CDS;gene=fabB;product=beta-ketoacyl synthase;protein_id=YP_001532352.1;transl_table=11
NC_009952.1	RefSeq	gene	1044358	1044867	.	-	.	ID=gene1027;Name=fabA;Dbxref=GeneID:5710526;gbkey=Gene;gene=fabA;locus_tag=Dshi_1010
NC_009952.1	RefSeq	CDS	1044358	1044867	.	-	0	ID=cds1004;Name=YP_001532353.1;Parent=gene1027;Note=catalyzes the dehydration of %283R%29-3-hydroxydecanoyl-ACP to 2%2C3-decenoyl-ACP or 3%2C4-decenoyl-ACP;Dbxref=Genbank:YP_001532353.1,GeneID:5710526;gbkey=CDS;gene=fabA;product=3-hydroxydecanoyl-ACP dehydratase;protein_id=YP_001532353.1;transl_table=11
NC_009952.1	RefSeq	gene	1045050	1045466	.	+	.	ID=gene1028;Name=Dshi_1011;Dbxref=GeneID:5710527;gbkey=Gene;locus_tag=Dshi_1011
NC_009952.1	RefSeq	CDS	1045050	1045466	.	+	0	ID=cds1005;Name=YP_001532354.1;Parent=gene1028;Note=Fur family includes metal ion uptake regulator proteins%2C that bind to the operator DNA and controls transcription of metal ion-responsive genes%3B Fur family;Dbxref=Genbank:YP_001532354.1,GeneID:5710527;gbkey=CDS;product=ferric uptake regulator;protein_id=YP_001532354.1;transl_table=11
NC_009952.1	RefSeq	gene	1045725	1046909	.	-	.	ID=gene1029;Name=metK;Dbxref=GeneID:5710528;gbkey=Gene;gene=metK;locus_tag=Dshi_1012
NC_009952.1	RefSeq	CDS	1045725	1046909	.	-	0	ID=cds1006;Name=YP_001532355.1;Parent=gene1029;Note=catalyzes the formation of S-adenosylmethionine from methionine and ATP%3B methionine adenosyltransferase;Dbxref=Genbank:YP_001532355.1,GeneID:5710528;gbkey=CDS;gene=metK;product=S-adenosylmethionine synthetase;protein_id=YP_001532355.1;transl_table=11
NC_009952.1	RefSeq	gene	1046997	1048490	.	-	.	ID=gene1030;Name=Dshi_1013;Dbxref=GeneID:5710529;gbkey=Gene;locus_tag=Dshi_1013
NC_009952.1	RefSeq	CDS	1046997	1048490	.	-	0	ID=cds1007;Name=YP_001532356.1;Parent=gene1030;Note=Transfers the fatty acyl group on membrane lipoproteins;Dbxref=Genbank:YP_001532356.1,GeneID:5710529;gbkey=CDS;product=apolipoprotein N-acyltransferase;protein_id=YP_001532356.1;transl_table=11
NC_009952.1	RefSeq	gene	1048493	1049401	.	-	.	ID=gene1031;Name=Dshi_1014;Dbxref=GeneID:5710530;gbkey=Gene;locus_tag=Dshi_1014
NC_009952.1	RefSeq	CDS	1048493	1049401	.	-	0	ID=cds1008;Name=YP_001532357.1;Parent=gene1031;Note=CBS domains have been shown to bind ligands with an adenosyl group such as AMP%2C ATP and S-AdoMet;Dbxref=Genbank:YP_001532357.1,GeneID:5710530;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532357.1;transl_table=11
NC_009952.1	RefSeq	gene	1049443	1049988	.	-	.	ID=gene1032;Name=Dshi_1015;Dbxref=GeneID:5710531;gbkey=Gene;locus_tag=Dshi_1015
NC_009952.1	RefSeq	CDS	1049443	1049988	.	-	0	ID=cds1009;Name=YP_001532358.1;Parent=gene1032;Dbxref=Genbank:YP_001532358.1,GeneID:5710531;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532358.1;transl_table=11
NC_009952.1	RefSeq	gene	1049966	1050979	.	-	.	ID=gene1033;Name=Dshi_1016;Dbxref=GeneID:5710532;gbkey=Gene;locus_tag=Dshi_1016
NC_009952.1	RefSeq	CDS	1049966	1050979	.	-	0	ID=cds1010;Name=YP_001532359.1;Parent=gene1033;Note=PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation.;Dbxref=Genbank:YP_001532359.1,GeneID:5710532;gbkey=CDS;product=PhoH family protein;protein_id=YP_001532359.1;transl_table=11
NC_009952.1	RefSeq	gene	1051254	1053368	.	+	.	ID=gene1034;Name=hemB2;Dbxref=GeneID:5710533;gbkey=Gene;gene=hemB2;locus_tag=Dshi_1017
NC_009952.1	RefSeq	CDS	1051254	1053368	.	+	0	ID=cds1011;Name=YP_001532360.1;Parent=gene1034;Note=Fur family includes metal ion uptake regulator proteins%2C that bind to the operator DNA and controls transcription of metal ion-responsive genes;Dbxref=Genbank:YP_001532360.1,GeneID:5710533;gbkey=CDS;gene=hemB2;product=TonB-dependent heme%2Fhemoglobin receptor family protein;protein_id=YP_001532360.1;transl_table=11
NC_009952.1	RefSeq	gene	1053428	1053700	.	+	.	ID=gene1035;Name=Dshi_1018;Dbxref=GeneID:5710534;gbkey=Gene;locus_tag=Dshi_1018
NC_009952.1	RefSeq	CDS	1053428	1053700	.	+	0	ID=cds1012;Name=YP_001532361.1;Parent=gene1035;Note=putative inner membrane protein;Dbxref=Genbank:YP_001532361.1,GeneID:5710534;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532361.1;transl_table=11
NC_009952.1	RefSeq	gene	1053712	1055025	.	-	.	ID=gene1036;Name=Dshi_1019;Dbxref=GeneID:5710535;gbkey=Gene;locus_tag=Dshi_1019
NC_009952.1	RefSeq	CDS	1053712	1055025	.	-	0	ID=cds1013;Name=YP_001532362.1;Parent=gene1036;Note=catalyzes the formation of 2-methylthio-N6-%28dimethylallyl%29adenosine %28ms%282%29i%286%29A%29 at position 37 in tRNAs that read codons beginning with uridine from N6-%28dimethylallyl%29adenosine %28i%286%29A%29;Dbxref=Genbank:YP_001532362.1,GeneID:5710535;gbkey=CDS;product=%28dimethylallyl%29adenosine tRNA methylthiotransferase;protein_id=YP_001532362.1;transl_table=11
NC_009952.1	RefSeq	gene	1055162	1056058	.	+	.	ID=gene1037;Name=Dshi_1020;Dbxref=GeneID:5710536;gbkey=Gene;locus_tag=Dshi_1020
NC_009952.1	RefSeq	CDS	1055162	1056058	.	+	0	ID=cds1014;Name=YP_001532363.1;Parent=gene1037;Dbxref=Genbank:YP_001532363.1,GeneID:5710536;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532363.1;transl_table=11
NC_009952.1	RefSeq	gene	1056510	1057241	.	+	.	ID=gene1038;Name=trmB;Dbxref=GeneID:5710537;gbkey=Gene;gene=trmB;locus_tag=Dshi_1021
NC_009952.1	RefSeq	CDS	1056510	1057241	.	+	0	ID=cds1015;Name=YP_001532364.1;Parent=gene1038;Note=tRNA %28guanine-N%287%29-%29-methyltransferase%3B catalyzes the formation of N%287%29-methylguanine at position 46 %28m7G46%29 in tRNA by transferring the methyl residue from S-adenosyl-L-methionine;Dbxref=Genbank:YP_001532364.1,GeneID:5710537;gbkey=CDS;gene=trmB;product=tRNA %28guanine-N%287%29-%29-methyltransferase;protein_id=YP_001532364.1;transl_table=11
NC_009952.1	RefSeq	gene	1057354	1058706	.	+	.	ID=gene1039;Name=aroA;Dbxref=GeneID:5710538;gbkey=Gene;gene=aroA;locus_tag=Dshi_1022
NC_009952.1	RefSeq	CDS	1057354	1058706	.	+	0	ID=cds1016;Name=YP_001532365.1;Parent=gene1039;Note=catalyzes the formation of 5-O-%281-carboxyvinyl%29-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis;Dbxref=Genbank:YP_001532365.1,GeneID:5710538;gbkey=CDS;gene=aroA;product=3-phosphoshikimate 1-carboxyvinyltransferase;protein_id=YP_001532365.1;transl_table=11
NC_009952.1	RefSeq	gene	1058724	1059362	.	+	.	ID=gene1040;Name=cmk;Dbxref=GeneID:5710991;gbkey=Gene;gene=cmk;locus_tag=Dshi_1023
NC_009952.1	RefSeq	CDS	1058724	1059362	.	+	0	ID=cds1017;Name=YP_001532366.1;Parent=gene1040;Note=Catalyzes the formation of %28d%29CDP from ATP and %28d%29CMP;Dbxref=Genbank:YP_001532366.1,GeneID:5710991;gbkey=CDS;gene=cmk;product=cytidylate kinase;protein_id=YP_001532366.1;transl_table=11
NC_009952.1	RefSeq	gene	1059484	1059801	.	+	.	ID=gene1041;Name=Dshi_1024;Dbxref=GeneID:5710992;gbkey=Gene;locus_tag=Dshi_1024
NC_009952.1	RefSeq	CDS	1059484	1059801	.	+	0	ID=cds1018;Name=YP_001532367.1;Parent=gene1041;Note=involved in formation of nucleoid structure and affects gene expression%2C similar to Rba. capsulatus Puf and Puh operon regulator hvrA;Dbxref=Genbank:YP_001532367.1,GeneID:5710992;gbkey=CDS;product=histone family protein nucleoid-structuring protein H-NS;protein_id=YP_001532367.1;transl_table=11
NC_009952.1	RefSeq	gene	1060024	1061700	.	+	.	ID=gene1042;Name=rpsA;Dbxref=GeneID:5710993;gbkey=Gene;gene=rpsA;locus_tag=Dshi_1025
NC_009952.1	RefSeq	CDS	1060024	1061700	.	+	0	ID=cds1019;Name=YP_001532368.1;Parent=gene1042;Note=in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit%3B autoregulates expression via a C-terminal domain%3B in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats%3B the S1 nucleic acid-binding domain is found associated with other proteins;Dbxref=Genbank:YP_001532368.1,GeneID:5710993;gbkey=CDS;gene=rpsA;product=30S ribosomal protein S1;protein_id=YP_001532368.1;transl_table=11
NC_009952.1	RefSeq	gene	1061749	1062312	.	-	.	ID=gene1043;Name=Dshi_1026;Dbxref=GeneID:5710994;gbkey=Gene;locus_tag=Dshi_1026
NC_009952.1	RefSeq	CDS	1061749	1062312	.	-	0	ID=cds1020;Name=YP_001532369.1;Parent=gene1043;Note=involved in septum formation;Dbxref=Genbank:YP_001532369.1,GeneID:5710994;gbkey=CDS;product=intracellular septation protein A;protein_id=YP_001532369.1;transl_table=11
NC_009952.1	RefSeq	gene	1062676	1062963	.	+	.	ID=gene1044;Name=ihfB;Dbxref=GeneID:5710995;gbkey=Gene;gene=ihfB;locus_tag=Dshi_1027
NC_009952.1	RefSeq	CDS	1062676	1062963	.	+	0	ID=cds1021;Name=YP_001532370.1;Parent=gene1044;Note=This protein is one of the two subunits of integration host factor%2C a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control;Dbxref=Genbank:YP_001532370.1,GeneID:5710995;gbkey=CDS;gene=ihfB;product=integration host factor subunit beta;protein_id=YP_001532370.1;transl_table=11
NC_009952.1	RefSeq	gene	1062968	1063333	.	+	.	ID=gene1045;Name=Dshi_1028;Dbxref=GeneID:5710996;gbkey=Gene;locus_tag=Dshi_1028
NC_009952.1	RefSeq	CDS	1062968	1063333	.	+	0	ID=cds1022;Name=YP_001532371.1;Parent=gene1045;Note=conserved in Rhodobacteraceae;Dbxref=Genbank:YP_001532371.1,GeneID:5710996;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532371.1;transl_table=11
NC_009952.1	RefSeq	gene	1063346	1064032	.	+	.	ID=gene1046;Name=trpF;Dbxref=GeneID:5710997;gbkey=Gene;gene=trpF;locus_tag=Dshi_1029
NC_009952.1	RefSeq	CDS	1063346	1064032	.	+	0	ID=cds1023;Name=YP_001532372.1;Parent=gene1046;Note=tryptophan biosynthesis%2C Reaction: N-%285-phospho-beta-D-ribosyl%29anthranilate %3C%3D%3E 1-%282-carboxyphenylamino%29-1-deoxy-D-ribulose 5-phosphate;Dbxref=Genbank:YP_001532372.1,GeneID:5710997;gbkey=CDS;gene=trpF;product=phosphoribosylanthranilate isomerase;protein_id=YP_001532372.1;transl_table=11
NC_009952.1	RefSeq	gene	1064067	1064297	.	+	.	ID=gene1047;Name=Dshi_1030;Dbxref=GeneID:5710998;gbkey=Gene;locus_tag=Dshi_1030
NC_009952.1	RefSeq	CDS	1064067	1064297	.	+	0	ID=cds1024;Name=YP_001532373.1;Parent=gene1047;Dbxref=Genbank:YP_001532373.1,GeneID:5710998;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532373.1;transl_table=11
NC_009952.1	RefSeq	gene	1064459	1065691	.	+	.	ID=gene1048;Name=trpB;Dbxref=GeneID:5710999;gbkey=Gene;gene=trpB;locus_tag=Dshi_1031
NC_009952.1	RefSeq	CDS	1064459	1065691	.	+	0	ID=cds1025;Name=YP_001532374.1;Parent=gene1048;Note=catalyzes the formation of L-tryptophan from L-serine and 1-%28indol-3-yl%29glycerol 3-phosphate;Dbxref=Genbank:YP_001532374.1,GeneID:5710999;gbkey=CDS;gene=trpB;product=tryptophan synthase subunit beta;protein_id=YP_001532374.1;transl_table=11
NC_009952.1	RefSeq	gene	1065916	1066362	.	+	.	ID=gene1049;Name=Dshi_1032;Dbxref=GeneID:5711000;gbkey=Gene;locus_tag=Dshi_1032
NC_009952.1	RefSeq	CDS	1065916	1066362	.	+	0	ID=cds1026;Name=YP_001532375.1;Parent=gene1049;Note=structure: signal peptide%2C Poly-DDR-repeat domain;Dbxref=Genbank:YP_001532375.1,GeneID:5711000;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532375.1;transl_table=11
NC_009952.1	RefSeq	gene	1066444	1066914	.	+	.	ID=gene1050;Name=Dshi_1033;Dbxref=GeneID:5711001;gbkey=Gene;locus_tag=Dshi_1033
NC_009952.1	RefSeq	CDS	1066444	1066914	.	+	0	ID=cds1027;Name=YP_001532376.1;Parent=gene1050;Note=structure: signal peptide%2C Poly-DDR-repeat domain;Dbxref=Genbank:YP_001532376.1,GeneID:5711001;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532376.1;transl_table=11
NC_009952.1	RefSeq	gene	1066907	1067449	.	+	.	ID=gene1051;Name=Dshi_1034;Dbxref=GeneID:5711002;gbkey=Gene;locus_tag=Dshi_1034
NC_009952.1	RefSeq	CDS	1066907	1067449	.	+	0	ID=cds1028;Name=YP_001532377.1;Parent=gene1051;Note=C-terminal LuxR Helix-Turn-helix motif%3B LuxR family;Dbxref=Genbank:YP_001532377.1,GeneID:5711002;gbkey=CDS;product=transcriptional regulator;protein_id=YP_001532377.1;transl_table=11
NC_009952.1	RefSeq	gene	1067835	1068809	.	+	.	ID=gene1052;Name=Dshi_1035;Dbxref=GeneID:5711003;gbkey=Gene;locus_tag=Dshi_1035
NC_009952.1	RefSeq	CDS	1067835	1068809	.	+	0	ID=cds1029;Name=YP_001532378.1;Parent=gene1052;Note=TRAP gene cluster - dctPQM;Dbxref=Genbank:YP_001532378.1,GeneID:5711003;gbkey=CDS;product=TRAP dicarboxylate transporter subunit DctP;protein_id=YP_001532378.1;transl_table=11
NC_009952.1	RefSeq	gene	1068862	1069407	.	+	.	ID=gene1053;Name=Dshi_1036;Dbxref=GeneID:5711004;gbkey=Gene;locus_tag=Dshi_1036
NC_009952.1	RefSeq	CDS	1068862	1069407	.	+	0	ID=cds1030;Name=YP_001532379.1;Parent=gene1053;Note=TRAP gene cluster - dctPQM;Dbxref=Genbank:YP_001532379.1,GeneID:5711004;gbkey=CDS;product=tripartite ATP-independent periplasmic transporter subunit DctQ;protein_id=YP_001532379.1;transl_table=11
NC_009952.1	RefSeq	gene	1069438	1070742	.	+	.	ID=gene1054;Name=Dshi_1037;Dbxref=GeneID:5711005;gbkey=Gene;locus_tag=Dshi_1037
NC_009952.1	RefSeq	CDS	1069438	1070742	.	+	0	ID=cds1031;Name=YP_001532380.1;Parent=gene1054;Note=TRAP gene cluster - dctPQM%3B DctM subunit;Dbxref=Genbank:YP_001532380.1,GeneID:5711005;gbkey=CDS;product=TRAP dicarboxylate transporter;protein_id=YP_001532380.1;transl_table=11
NC_009952.1	RefSeq	gene	1070739	1071509	.	-	.	ID=gene1055;Name=Dshi_1038;Dbxref=GeneID:5711006;gbkey=Gene;locus_tag=Dshi_1038
NC_009952.1	RefSeq	CDS	1070739	1071509	.	-	0	ID=cds1032;Name=YP_001532381.1;Parent=gene1055;Note=Glutamate racemase%2C which interconverts L-glutamate into D-glutamate%2C is required for the biosynthesis of peptidoglycan;Dbxref=Genbank:YP_001532381.1,GeneID:5711006;gbkey=CDS;product=Asp%2FGlu racemase;protein_id=YP_001532381.1;transl_table=11
NC_009952.1	RefSeq	gene	1071506	1072714	.	-	.	ID=gene1056;Name=Dshi_1039;Dbxref=GeneID:5711007;gbkey=Gene;locus_tag=Dshi_1039
NC_009952.1	RefSeq	CDS	1071506	1072714	.	-	0	ID=cds1033;Name=YP_001532382.1;Parent=gene1056;Note=Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction%2C two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD%28P%29H.;Dbxref=Genbank:YP_001532382.1,GeneID:5711007;gbkey=CDS;product=monooxygenase FAD-binding;protein_id=YP_001532382.1;transl_table=11
NC_009952.1	RefSeq	gene	1072711	1075002	.	-	.	ID=gene1057;Name=Dshi_1040;Dbxref=GeneID:5711008;gbkey=Gene;locus_tag=Dshi_1040
NC_009952.1	RefSeq	CDS	1072711	1075002	.	-	0	ID=cds1034;Name=YP_001532383.1;Parent=gene1057;Note=high similarity to predicted Carbon-monoxide dehydrogenase proteins;Dbxref=Genbank:YP_001532383.1,GeneID:5711008;gbkey=CDS;product=aldehyde oxidase and xanthine dehydrogenase molybdopterin-binding;protein_id=YP_001532383.1;transl_table=11
NC_009952.1	RefSeq	gene	1075005	1076324	.	-	.	ID=gene1058;Name=Dshi_1041;Dbxref=GeneID:5711009;gbkey=Gene;locus_tag=Dshi_1041
NC_009952.1	RefSeq	CDS	1075005	1076324	.	-	0	ID=cds1035;Name=YP_001532384.1;Parent=gene1058;Note=TRAP gene cluster - dctPQM%3B DctM subunit;Dbxref=Genbank:YP_001532384.1,GeneID:5711009;gbkey=CDS;product=TRAP dicarboxylate transporter;protein_id=YP_001532384.1;transl_table=11
NC_009952.1	RefSeq	gene	1076328	1076834	.	-	.	ID=gene1059;Name=Dshi_1042;Dbxref=GeneID:5711010;gbkey=Gene;locus_tag=Dshi_1042
NC_009952.1	RefSeq	CDS	1076328	1076834	.	-	0	ID=cds1036;Name=YP_001532385.1;Parent=gene1059;Note=TRAP gene cluster - dctPQM;Dbxref=Genbank:YP_001532385.1,GeneID:5711010;gbkey=CDS;product=tripartite ATP-independent periplasmic transporter subunit DctQ;protein_id=YP_001532385.1;transl_table=11
NC_009952.1	RefSeq	gene	1076851	1077846	.	-	.	ID=gene1060;Name=Dshi_1043;Dbxref=GeneID:5711011;gbkey=Gene;locus_tag=Dshi_1043
NC_009952.1	RefSeq	CDS	1076851	1077846	.	-	0	ID=cds1037;Name=YP_001532386.1;Parent=gene1060;Note=TRAP gene cluster - dctPQM;Dbxref=Genbank:YP_001532386.1,GeneID:5711011;gbkey=CDS;product=TRAP dicarboxylate transporter subunit DctP;protein_id=YP_001532386.1;transl_table=11
NC_009952.1	RefSeq	gene	1078350	1079054	.	+	.	ID=gene1061;Name=Dshi_1044;Dbxref=GeneID:5711012;gbkey=Gene;locus_tag=Dshi_1044
NC_009952.1	RefSeq	CDS	1078350	1079054	.	+	0	ID=cds1038;Name=YP_001532387.1;Parent=gene1061;Note=N-terminal HTH region%2C C-terminal FCD effector binding domain%3B GntR family;Dbxref=Genbank:YP_001532387.1,GeneID:5711012;gbkey=CDS;product=transcriptional regulator;protein_id=YP_001532387.1;transl_table=11
NC_009952.1	RefSeq	gene	1079051	1079896	.	+	.	ID=gene1062;Name=Dshi_1045;Dbxref=GeneID:5711013;gbkey=Gene;locus_tag=Dshi_1045
NC_009952.1	RefSeq	CDS	1079051	1079896	.	+	0	ID=cds1039;Name=YP_001532388.1;Parent=gene1062;Dbxref=Genbank:YP_001532388.1,GeneID:5711013;gbkey=CDS;product=HpcH%2FHpaI aldolase;protein_id=YP_001532388.1;transl_table=11
NC_009952.1	RefSeq	gene	1079893	1081023	.	+	.	ID=gene1063;Name=Dshi_1046;Dbxref=GeneID:5711014;gbkey=Gene;locus_tag=Dshi_1046
NC_009952.1	RefSeq	CDS	1079893	1081023	.	+	0	ID=cds1040;Name=YP_001532389.1;Parent=gene1063;Note=contains Amidase signature %28AS%29 motif%2C AS enzymes catalyse the hydrolysis of amide bonds %28CO-NH2%29;Dbxref=Genbank:YP_001532389.1,GeneID:5711014;gbkey=CDS;product=amidase;protein_id=YP_001532389.1;transl_table=11
NC_009952.1	RefSeq	gene	1081020	1081880	.	-	.	ID=gene1064;Name=Dshi_1047;Dbxref=GeneID:5711015;gbkey=Gene;locus_tag=Dshi_1047
NC_009952.1	RefSeq	CDS	1081020	1081880	.	-	0	ID=cds1041;Name=YP_001532390.1;Parent=gene1064;Dbxref=Genbank:YP_001532390.1,GeneID:5711015;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532390.1;transl_table=11
NC_009952.1	RefSeq	gene	1081882	1082679	.	-	.	ID=gene1065;Name=Dshi_1048;Dbxref=GeneID:5711016;gbkey=Gene;locus_tag=Dshi_1048
NC_009952.1	RefSeq	CDS	1081882	1082679	.	-	0	ID=cds1042;Name=YP_001532391.1;Parent=gene1065;Note=Enoyl-CoA hydratase and 3-2trans-enoyl-CoA isomerase are two enzymes involved in fatty acid metabolism;Dbxref=Genbank:YP_001532391.1,GeneID:5711016;gbkey=CDS;product=enoyl-CoA hydratase%2Fisomerase;protein_id=YP_001532391.1;transl_table=11
NC_009952.1	RefSeq	gene	1082676	1083461	.	-	.	ID=gene1066;Name=Dshi_1049;Dbxref=GeneID:5711017;gbkey=Gene;locus_tag=Dshi_1049
NC_009952.1	RefSeq	CDS	1082676	1083461	.	-	0	ID=cds1043;Name=YP_001532392.1;Parent=gene1066;Note=large family of oxidoreductases;Dbxref=Genbank:YP_001532392.1,GeneID:5711017;gbkey=CDS;product=short chain dehydrogenase;protein_id=YP_001532392.1;transl_table=11
NC_009952.1	RefSeq	gene	1083469	1083843	.	-	.	ID=gene1067;Name=Dshi_1050;Dbxref=GeneID:5711018;gbkey=Gene;locus_tag=Dshi_1050
NC_009952.1	RefSeq	CDS	1083469	1083843	.	-	0	ID=cds1044;Name=YP_001532393.1;Parent=gene1067;Dbxref=Genbank:YP_001532393.1,GeneID:5711018;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532393.1;transl_table=11
NC_009952.1	RefSeq	gene	1083833	1085182	.	-	.	ID=gene1068;Name=Dshi_1051;Dbxref=GeneID:5711019;gbkey=Gene;locus_tag=Dshi_1051
NC_009952.1	RefSeq	CDS	1083833	1085182	.	-	0	ID=cds1045;Name=YP_001532394.1;Parent=gene1068;Note=This family includes 2-methylcitrate dehydratase %28PrpD%29 that is required for propionate catabolism. It catalyses the third step of the 2-methylcitric acid cycle.;Dbxref=Genbank:YP_001532394.1,GeneID:5711019;gbkey=CDS;product=MmgE%2FPrpD family protein;protein_id=YP_001532394.1;transl_table=11
NC_009952.1	RefSeq	gene	1085608	1086777	.	+	.	ID=gene1069;Name=Dshi_1052;Dbxref=GeneID:5711020;gbkey=Gene;locus_tag=Dshi_1052
NC_009952.1	RefSeq	CDS	1085608	1086777	.	+	0	ID=cds1046;Name=YP_001532395.1;Parent=gene1069;Note=ABC transporter %28importer%29 gene cluster: receptor;Dbxref=Genbank:YP_001532395.1,GeneID:5711020;gbkey=CDS;product=spermidine%2Fputrescine-binding periplasmic protein-like protein;protein_id=YP_001532395.1;transl_table=11
NC_009952.1	RefSeq	gene	1086781	1087698	.	+	.	ID=gene1070;Name=Dshi_1053;Dbxref=GeneID:5711021;gbkey=Gene;locus_tag=Dshi_1053
NC_009952.1	RefSeq	CDS	1086781	1087698	.	+	0	ID=cds1047;Name=YP_001532396.1;Parent=gene1070;Note=ABC transporter %28importer%29 gene cluster: 1st membrane spanning domain %28MSD%29%3B part of a heterotetramer;Dbxref=Genbank:YP_001532396.1,GeneID:5711021;gbkey=CDS;product=binding-protein-dependent transport system inner membrane protein;protein_id=YP_001532396.1;transl_table=11
NC_009952.1	RefSeq	gene	1087709	1088599	.	+	.	ID=gene1071;Name=Dshi_1054;Dbxref=GeneID:5711022;gbkey=Gene;locus_tag=Dshi_1054
NC_009952.1	RefSeq	CDS	1087709	1088599	.	+	0	ID=cds1048;Name=YP_001532397.1;Parent=gene1071;Note=ABC transporter %28importer%29 gene cluster: 2nd membrane spanning domain %28MSD%29%3B part of a heterotetramer;Dbxref=Genbank:YP_001532397.1,GeneID:5711022;gbkey=CDS;product=binding-protein-dependent transport system inner membrane protein;protein_id=YP_001532397.1;transl_table=11
NC_009952.1	RefSeq	gene	1088608	1089708	.	+	.	ID=gene1072;Name=Dshi_1055;Dbxref=GeneID:5711023;gbkey=Gene;locus_tag=Dshi_1055
NC_009952.1	RefSeq	CDS	1088608	1089708	.	+	0	ID=cds1049;Name=YP_001532398.1;Parent=gene1072;Note=ABC transporter %28importer%29 gene cluster %28disrupted%29: ATP binding cassette %28ABC%29 domain%3B part of a heterotetramer;Dbxref=Genbank:YP_001532398.1,GeneID:5711023;gbkey=CDS;product=ABC transporter-like protein;protein_id=YP_001532398.1;transl_table=11
NC_009952.1	RefSeq	gene	1089720	1090628	.	+	.	ID=gene1073;Name=Dshi_1056;Dbxref=GeneID:5711024;gbkey=Gene;locus_tag=Dshi_1056
NC_009952.1	RefSeq	CDS	1089720	1090628	.	+	0	ID=cds1050;Name=YP_001532399.1;Parent=gene1073;Dbxref=Genbank:YP_001532399.1,GeneID:5711024;gbkey=CDS;product=polysaccharide deacetylase;protein_id=YP_001532399.1;transl_table=11
NC_009952.1	RefSeq	gene	1090625	1091812	.	+	.	ID=gene1074;Name=Dshi_1057;Dbxref=GeneID:5711025;gbkey=Gene;locus_tag=Dshi_1057
NC_009952.1	RefSeq	CDS	1090625	1091812	.	+	0	ID=cds1051;Name=YP_001532400.1;Parent=gene1074;Note=Family III CoA-transferases occur in prokaryotes and eukaryotes%2C and catalyse CoA-transfer reactions in a highly substrate- and stereo-specific manner;Dbxref=Genbank:YP_001532400.1,GeneID:5711025;gbkey=CDS;product=L-carnitine dehydratase%2Fbile acid-inducible protein F;protein_id=YP_001532400.1;transl_table=11
NC_009952.1	RefSeq	gene	1091824	1093014	.	+	.	ID=gene1075;Name=Dshi_1058;Dbxref=GeneID:5711026;gbkey=Gene;locus_tag=Dshi_1058
NC_009952.1	RefSeq	CDS	1091824	1093014	.	+	0	ID=cds1052;Name=YP_001532401.1;Parent=gene1075;Note=N-terminal%2C middle and C-terminal domain%2C Oxidoreductase acting on the CH-CH group of donors with other acceptors;Dbxref=Genbank:YP_001532401.1,GeneID:5711026;gbkey=CDS;product=acyl-CoA dehydrogenase domain-containing protein;protein_id=YP_001532401.1;transl_table=11
NC_009952.1	RefSeq	gene	1093034	1094338	.	-	.	ID=gene1076;Name=Dshi_1059;Dbxref=GeneID:5711027;gbkey=Gene;locus_tag=Dshi_1059
NC_009952.1	RefSeq	CDS	1093034	1094338	.	-	0	ID=cds1053;Name=YP_001532402.1;Parent=gene1076;Dbxref=Genbank:YP_001532402.1,GeneID:5711027;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532402.1;transl_table=11
NC_009952.1	RefSeq	gene	1094355	1095233	.	-	.	ID=gene1077;Name=Dshi_1060;Dbxref=GeneID:5711028;gbkey=Gene;locus_tag=Dshi_1060
NC_009952.1	RefSeq	CDS	1094355	1095233	.	-	0	ID=cds1054;Name=YP_001532403.1;Parent=gene1077;Dbxref=Genbank:YP_001532403.1,GeneID:5711028;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532403.1;transl_table=11
NC_009952.1	RefSeq	gene	1095405	1096250	.	-	.	ID=gene1078;Name=Dshi_1061;Dbxref=GeneID:5711029;gbkey=Gene;locus_tag=Dshi_1061
NC_009952.1	RefSeq	CDS	1095405	1096250	.	-	0	ID=cds1055;Name=YP_001532404.1;Parent=gene1078;Dbxref=Genbank:YP_001532404.1,GeneID:5711029;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532404.1;transl_table=11
NC_009952.1	RefSeq	gene	1096310	1096927	.	-	.	ID=gene1079;Name=Dshi_1062;Dbxref=GeneID:5711030;gbkey=Gene;locus_tag=Dshi_1062
NC_009952.1	RefSeq	CDS	1096310	1096927	.	-	0	ID=cds1056;Name=YP_001532405.1;Parent=gene1079;Note=high similarity to cobalt-zinc-cadmium resistance protein czcN%2C but no other czc genes in genome%2C inner membrane protein;Dbxref=Genbank:YP_001532405.1,GeneID:5711030;gbkey=CDS;product=isoprenylcysteine carboxyl methyltransferase;protein_id=YP_001532405.1;transl_table=11
NC_009952.1	RefSeq	gene	1097007	1097243	.	-	.	ID=gene1080;Name=Dshi_1063;Dbxref=GeneID:5711031;gbkey=Gene;locus_tag=Dshi_1063
NC_009952.1	RefSeq	CDS	1097007	1097243	.	-	0	ID=cds1057;Name=YP_001532406.1;Parent=gene1080;Dbxref=Genbank:YP_001532406.1,GeneID:5711031;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532406.1;transl_table=11
NC_009952.1	RefSeq	gene	1097236	1097727	.	-	.	ID=gene1081;Name=rufX;Dbxref=GeneID:5711032;gbkey=Gene;gene=rufX;locus_tag=Dshi_1064
NC_009952.1	RefSeq	CDS	1097236	1097727	.	-	0	ID=cds1058;Name=YP_001532407.1;Parent=gene1081;Note=similar to RuvC resolvase with substantial differences%3B NMR structural information suggests this protein is monomeric%3B unknown cellular function;Dbxref=Genbank:YP_001532407.1,GeneID:5711032;gbkey=CDS;gene=rufX;product=Holliday junction resolvase-like protein;protein_id=YP_001532407.1;transl_table=11
NC_009952.1	RefSeq	gene	1098107	1098376	.	+	.	ID=gene1082;Name=Dshi_1065;Dbxref=GeneID:5711033;gbkey=Gene;locus_tag=Dshi_1065
NC_009952.1	RefSeq	CDS	1098107	1098376	.	+	0	ID=cds1059;Name=YP_001532408.1;Parent=gene1082;Dbxref=Genbank:YP_001532408.1,GeneID:5711033;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532408.1;transl_table=11
NC_009952.1	RefSeq	gene	1098458	1098886	.	+	.	ID=gene1083;Name=Dshi_1066;Dbxref=GeneID:5711034;gbkey=Gene;locus_tag=Dshi_1066
NC_009952.1	RefSeq	CDS	1098458	1098886	.	+	0	ID=cds1060;Name=YP_001532409.1;Parent=gene1083;Dbxref=Genbank:YP_001532409.1,GeneID:5711034;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532409.1;transl_table=11
NC_009952.1	RefSeq	gene	1099165	1099764	.	+	.	ID=gene1084;Name=sod;Dbxref=GeneID:5711035;gbkey=Gene;gene=sod;locus_tag=Dshi_1067
NC_009952.1	RefSeq	CDS	1099165	1099764	.	+	0	ID=cds1061;Name=YP_001532410.1;Parent=gene1084;Note=Destroys radicals which are normally produced within the cells and which are toxic to biological systems%2C Reaction: 2 superoxide %2B 2 H%2B %3D O2 %2B H2O2;Dbxref=Genbank:YP_001532410.1,GeneID:5711035;gbkey=CDS;gene=sod;product=superoxide dismutase;protein_id=YP_001532410.1;transl_table=11
NC_009952.1	RefSeq	gene	1099844	1100293	.	-	.	ID=gene1085;Name=Dshi_1068;Dbxref=GeneID:5711036;gbkey=Gene;locus_tag=Dshi_1068
NC_009952.1	RefSeq	CDS	1099844	1100293	.	-	0	ID=cds1062;Name=YP_001532411.1;Parent=gene1085;Note=conserved in Rhodobacteraceae;Dbxref=Genbank:YP_001532411.1,GeneID:5711036;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532411.1;transl_table=11
NC_009952.1	RefSeq	gene	1100355	1100849	.	+	.	ID=gene1086;Name=Dshi_1069;Dbxref=GeneID:5711037;gbkey=Gene;locus_tag=Dshi_1069
NC_009952.1	RefSeq	CDS	1100355	1100849	.	+	0	ID=cds1063;Name=YP_001532412.1;Parent=gene1086;Note=This family consists of the SufE-related proteins. These have been implicated in Fe-S metabolism and export;Dbxref=Genbank:YP_001532412.1,GeneID:5711037;gbkey=CDS;product=Fe-S metabolism associated SufE;protein_id=YP_001532412.1;transl_table=11
NC_009952.1	RefSeq	gene	1101037	1101669	.	-	.	ID=gene1087;Name=Dshi_1070;Dbxref=GeneID:5711038;gbkey=Gene;locus_tag=Dshi_1070
NC_009952.1	RefSeq	CDS	1101037	1101669	.	-	0	ID=cds1064;Name=YP_001532413.1;Parent=gene1087;Dbxref=Genbank:YP_001532413.1,GeneID:5711038;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532413.1;transl_table=11
NC_009952.1	RefSeq	gene	1101666	1102001	.	-	.	ID=gene1088;Name=Dshi_1071;Dbxref=GeneID:5711039;gbkey=Gene;locus_tag=Dshi_1071
NC_009952.1	RefSeq	CDS	1101666	1102001	.	-	0	ID=cds1065;Name=YP_001532414.1;Parent=gene1088;Dbxref=Genbank:YP_001532414.1,GeneID:5711039;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532414.1;transl_table=11
NC_009952.1	RefSeq	gene	1101982	1102200	.	-	.	ID=gene1089;Name=Dshi_1072;Dbxref=GeneID:5711040;gbkey=Gene;locus_tag=Dshi_1072
NC_009952.1	RefSeq	CDS	1101982	1102200	.	-	0	ID=cds1066;Name=YP_001532415.1;Parent=gene1089;Dbxref=Genbank:YP_001532415.1,GeneID:5711040;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532415.1;transl_table=11
NC_009952.1	RefSeq	gene	1102259	1103038	.	-	.	ID=gene1090;Name=Dshi_1073;Dbxref=GeneID:5711041;gbkey=Gene;locus_tag=Dshi_1073
NC_009952.1	RefSeq	CDS	1102259	1103038	.	-	0	ID=cds1067;Name=YP_001532416.1;Parent=gene1090;Note=contains B12-binding domain%2C enzymatic domain not present;Dbxref=Genbank:YP_001532416.1,GeneID:5711041;gbkey=CDS;product=methionine synthase;protein_id=YP_001532416.1;transl_table=11
NC_009952.1	RefSeq	gene	1103070	1104095	.	-	.	ID=gene1091;Name=Dshi_1074;Dbxref=GeneID:5711042;gbkey=Gene;locus_tag=Dshi_1074
NC_009952.1	RefSeq	CDS	1103070	1104095	.	-	0	ID=cds1068;Name=YP_001532417.1;Parent=gene1091;Note=catalyzes the formation of methionine from L-homocysteine and S-adenosyl-L-methionine;Dbxref=Genbank:YP_001532417.1,GeneID:5711042;gbkey=CDS;product=methionine synthase I;protein_id=YP_001532417.1;transl_table=11
NC_009952.1	RefSeq	gene	1104398	1104712	.	-	.	ID=gene1092;Name=Dshi_1075;Dbxref=GeneID:5711043;gbkey=Gene;locus_tag=Dshi_1075
NC_009952.1	RefSeq	CDS	1104398	1104712	.	-	0	ID=cds1069;Name=YP_001532418.1;Parent=gene1092;Dbxref=Genbank:YP_001532418.1,GeneID:5711043;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532418.1;transl_table=11
NC_009952.1	RefSeq	gene	1104888	1105649	.	+	.	ID=gene1093;Name=purC;Dbxref=GeneID:5711044;gbkey=Gene;gene=purC;locus_tag=Dshi_1076
NC_009952.1	RefSeq	CDS	1104888	1105649	.	+	0	ID=cds1070;Name=YP_001532419.1;Parent=gene1093;Note=catalyzes the formation of %28S%29-2-%285-amino-1-%285-phospho-D-ribosyl%29imidazole-4-carboxamido%29succinate from 5-amino-1-%285-phospho-D-ribosyl%29imidazole-4-carboxylate and L-aspartate in purine biosynthesis%3B SAICAR synthase;Dbxref=Genbank:YP_001532419.1,GeneID:5711044;gbkey=CDS;gene=purC;product=phosphoribosylaminoimidazolesuccinocarboxamide synthase;protein_id=YP_001532419.1;transl_table=11
NC_009952.1	RefSeq	gene	1105786	1106016	.	+	.	ID=gene1094;Name=purS;Dbxref=GeneID:5711045;gbkey=Gene;gene=purS;locus_tag=Dshi_1077
NC_009952.1	RefSeq	CDS	1105786	1106016	.	+	0	ID=cds1071;Name=YP_001532420.1;Parent=gene1094;Note=part of heterotrimer with purL%282500131741%29 and purQ%282500131101%29%2C required for enzymatic activity of the complex;Dbxref=Genbank:YP_001532420.1,GeneID:5711045;gbkey=CDS;gene=purS;product=phosphoribosylformylglycinamidine synthase;protein_id=YP_001532420.1;transl_table=11
NC_009952.1	RefSeq	gene	1106016	1107053	.	+	.	ID=gene1095;Name=purS;Dbxref=GeneID:5711046;gbkey=Gene;gene=purS;locus_tag=Dshi_1078
NC_009952.1	RefSeq	CDS	1106016	1107053	.	+	0	ID=cds1072;Name=YP_001532421.1;Parent=gene1095;Note=Reaction: An alcohol %2B NAD%2B %3D an aldehyde or ketone %2B NADH;Dbxref=Genbank:YP_001532421.1,GeneID:5711046;gbkey=CDS;product=alcohol dehydrogenase zinc-binding domain-containing protein;protein_id=YP_001532421.1;transl_table=11
NC_009952.1	RefSeq	gene	1107066	1107737	.	+	.	ID=gene1096;Name=purQ;Dbxref=GeneID:5711047;gbkey=Gene;gene=purQ;locus_tag=Dshi_1079
NC_009952.1	RefSeq	CDS	1107066	1107737	.	+	0	ID=cds1073;Name=YP_001532422.1;Parent=gene1096;Note=Part of a heterotrimer with purL%282500131741%29 and purS%282500131099%29%2C Reaction: ATP %2B N2-formyl-N1-%285-phospho-D-ribosyl%29glycinamide %2B L-glutamine %2B H2O %3D ADP %2B phosphate %2B 2-%28formamido%29-N1-%285-phospho-D-ribosyl%29acetamidine %2B L-glutamate;Dbxref=Genbank:YP_001532422.1,GeneID:5711047;gbkey=CDS;gene=purQ;product=phosphoribosylformylglycinamidine synthase I;protein_id=YP_001532422.1;transl_table=11
NC_009952.1	RefSeq	gene	1107811	1109568	.	+	.	ID=gene1097;Name=Dshi_1080;Dbxref=GeneID:5711048;gbkey=Gene;locus_tag=Dshi_1080
NC_009952.1	RefSeq	CDS	1107811	1109568	.	+	0	ID=cds1074;Name=YP_001532423.1;Parent=gene1097;Note=integral membrane bound sensor histidine kinase%2C similar to C4-dicarboxylate transport sensor protein dctB;Dbxref=Genbank:YP_001532423.1,GeneID:5711048;gbkey=CDS;product=integral membrane sensor signal transduction histidine kinase;protein_id=YP_001532423.1;transl_table=11
NC_009952.1	RefSeq	gene	1109596	1110921	.	+	.	ID=gene1098;Name=Dshi_1081;Dbxref=GeneID:5711049;gbkey=Gene;locus_tag=Dshi_1081
NC_009952.1	RefSeq	CDS	1109596	1110921	.	+	0	ID=cds1075;Name=YP_001532424.1;Parent=gene1098;Note=sigma54 specific%2C similar to C4-dicarboxylate transport transcriptional regulatory protein dctD%3B sigma54 specific%2C transcriptional regulator%2C Fis family;Dbxref=Genbank:YP_001532424.1,GeneID:5711049;gbkey=CDS;product=two component;protein_id=YP_001532424.1;transl_table=11
NC_009952.1	RefSeq	gene	1111025	1111882	.	-	.	ID=gene1099;Name=ate;Dbxref=GeneID:5711050;gbkey=Gene;gene=ate;locus_tag=Dshi_1082
NC_009952.1	RefSeq	CDS	1111025	1111882	.	-	0	ID=cds1076;Name=YP_001532425.1;Parent=gene1099;Note=Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate;Dbxref=Genbank:YP_001532425.1,GeneID:5711050;gbkey=CDS;gene=ate;product=arginyl-tRNA-protein transferase;protein_id=YP_001532425.1;transl_table=11
NC_009952.1	RefSeq	gene	1111953	1112393	.	-	.	ID=gene1100;Name=Dshi_1083;Dbxref=GeneID:5711051;gbkey=Gene;locus_tag=Dshi_1083
NC_009952.1	RefSeq	CDS	1111953	1112393	.	-	0	ID=cds1077;Name=YP_001532426.1;Parent=gene1100;Note=two transmembrane domains%2C RDD domain;Dbxref=Genbank:YP_001532426.1,GeneID:5711051;gbkey=CDS;product=RDD domain-containing protein;protein_id=YP_001532426.1;transl_table=11
NC_009952.1	RefSeq	gene	1112500	1112910	.	-	.	ID=gene1101;Name=Dshi_1084;Dbxref=GeneID:5711052;gbkey=Gene;locus_tag=Dshi_1084
NC_009952.1	RefSeq	CDS	1112500	1112910	.	-	0	ID=cds1078;Name=YP_001532427.1;Parent=gene1101;Dbxref=Genbank:YP_001532427.1,GeneID:5711052;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532427.1;transl_table=11
NC_009952.1	RefSeq	gene	1113043	1113513	.	-	.	ID=gene1102;Name=Dshi_1085;Dbxref=GeneID:5711053;gbkey=Gene;locus_tag=Dshi_1085
NC_009952.1	RefSeq	CDS	1113043	1113513	.	-	0	ID=cds1079;Name=YP_001532428.1;Parent=gene1102;Note=YbaK%2Fprolyl-tRNA synthetase associated domain of unknown funktion;Dbxref=Genbank:YP_001532428.1,GeneID:5711053;gbkey=CDS;product=YbaK%2Fprolyl-tRNA synthetase associated domain-containing protein;protein_id=YP_001532428.1;transl_table=11
NC_009952.1	RefSeq	gene	1113620	1114048	.	+	.	ID=gene1103;Name=Dshi_1086;Dbxref=GeneID:5711054;gbkey=Gene;locus_tag=Dshi_1086
NC_009952.1	RefSeq	CDS	1113620	1114048	.	+	0	ID=cds1080;Name=YP_001532429.1;Parent=gene1103;Dbxref=Genbank:YP_001532429.1,GeneID:5711054;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532429.1;transl_table=11
NC_009952.1	RefSeq	gene	1114171	1115130	.	+	.	ID=gene1104;Name=Dshi_1087;Dbxref=GeneID:5711055;gbkey=Gene;locus_tag=Dshi_1087
NC_009952.1	RefSeq	CDS	1114171	1115130	.	+	0	ID=cds1081;Name=YP_001532430.1;Parent=gene1104;Note=TRAP gene cluster - dctPQM%3B TAXI family;Dbxref=Genbank:YP_001532430.1,GeneID:5711055;gbkey=CDS;product=TRAP transporter solute receptor;protein_id=YP_001532430.1;transl_table=11
NC_009952.1	RefSeq	gene	1115143	1116930	.	+	.	ID=gene1105;Name=Dshi_1088;Dbxref=GeneID:5711056;gbkey=Gene;locus_tag=Dshi_1088
NC_009952.1	RefSeq	CDS	1115143	1116930	.	+	0	ID=cds1082;Name=YP_001532431.1;Parent=gene1105;Note=TRAP gene cluster - dctPQM%3B 4TM%2F12TM fusion protein;Dbxref=Genbank:YP_001532431.1,GeneID:5711056;gbkey=CDS;product=TRAP transporter;protein_id=YP_001532431.1;transl_table=11
NC_009952.1	RefSeq	gene	1117014	1118006	.	+	.	ID=gene1106;Name=Dshi_1089;Dbxref=GeneID:5711057;gbkey=Gene;locus_tag=Dshi_1089
NC_009952.1	RefSeq	CDS	1117014	1118006	.	+	0	ID=cds1083;Name=YP_001532432.1;Parent=gene1106;Note=TRAP gene cluster - dctPQM;Dbxref=Genbank:YP_001532432.1,GeneID:5711057;gbkey=CDS;product=TRAP dicarboxylate transporter subunit DctP;protein_id=YP_001532432.1;transl_table=11
NC_009952.1	RefSeq	gene	1118068	1118565	.	+	.	ID=gene1107;Name=Dshi_1090;Dbxref=GeneID:5711058;gbkey=Gene;locus_tag=Dshi_1090
NC_009952.1	RefSeq	CDS	1118068	1118565	.	+	0	ID=cds1084;Name=YP_001532433.1;Parent=gene1107;Note=TRAP gene cluster - dctPQM;Dbxref=Genbank:YP_001532433.1,GeneID:5711058;gbkey=CDS;product=tripartite ATP-independent periplasmic transporter subunit DctQ;protein_id=YP_001532433.1;transl_table=11
NC_009952.1	RefSeq	gene	1118562	1119836	.	+	.	ID=gene1108;Name=Dshi_1091;Dbxref=GeneID:5711059;gbkey=Gene;locus_tag=Dshi_1091
NC_009952.1	RefSeq	CDS	1118562	1119836	.	+	0	ID=cds1085;Name=YP_001532434.1;Parent=gene1108;Note=TRAP gene cluster - dctPQM%3B DctM subunit;Dbxref=Genbank:YP_001532434.1,GeneID:5711059;gbkey=CDS;product=TRAP dicarboxylate transporter;protein_id=YP_001532434.1;transl_table=11
NC_009952.1	RefSeq	gene	1119841	1120722	.	+	.	ID=gene1109;Name=Dshi_1092;Dbxref=GeneID:5711060;gbkey=Gene;locus_tag=Dshi_1092
NC_009952.1	RefSeq	CDS	1119841	1120722	.	+	0	ID=cds1086;Name=YP_001532435.1;Parent=gene1109;Note=Reaction: 1-Carboxyvinyl carboxyphosphonate %3C%3D%3E 3-%28Hydrohydroxyphosphoryl%29pyruvate %2B CO2;Dbxref=Genbank:YP_001532435.1,GeneID:5711060;gbkey=CDS;product=carboxyvinyl-carboxyphosphonatephosphorylmutase;protein_id=YP_001532435.1;transl_table=11
NC_009952.1	RefSeq	gene	1120783	1121310	.	+	.	ID=gene1110;Name=Dshi_1093;Dbxref=GeneID:5711061;gbkey=Gene;locus_tag=Dshi_1093
NC_009952.1	RefSeq	CDS	1120783	1121310	.	+	0	ID=cds1087;Name=YP_001532436.1;Parent=gene1110;Dbxref=Genbank:YP_001532436.1,GeneID:5711061;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532436.1;transl_table=11
NC_009952.1	RefSeq	gene	1121391	1122380	.	+	.	ID=gene1111;Name=Dshi_1094;Dbxref=GeneID:5711062;gbkey=Gene;locus_tag=Dshi_1094
NC_009952.1	RefSeq	CDS	1121391	1122380	.	+	0	ID=cds1088;Name=YP_001532437.1;Parent=gene1111;Note=Domains: GAF %28present in phytochromes and cGMP-specific phosphodiesterases%29%2C FIS%3B Fis family;Dbxref=Genbank:YP_001532437.1,GeneID:5711062;gbkey=CDS;product=transcriptional regulator;protein_id=YP_001532437.1;transl_table=11
NC_009952.1	RefSeq	gene	1122494	1124014	.	+	.	ID=gene1112;Name=Dshi_1095;Dbxref=GeneID:5711063;gbkey=Gene;locus_tag=Dshi_1095
NC_009952.1	RefSeq	CDS	1122494	1124014	.	+	0	ID=cds1089;Name=YP_001532438.1;Parent=gene1112;Note=Reaction: An aldehyde %2B NAD%2B %2B H2O %3D an acid %2B NADH;Dbxref=Genbank:YP_001532438.1,GeneID:5711063;gbkey=CDS;product=aldehyde dehydrogenase;protein_id=YP_001532438.1;transl_table=11
NC_009952.1	RefSeq	gene	1124071	1124751	.	-	.	ID=gene1113;Name=Dshi_1096;Dbxref=GeneID:5711064;gbkey=Gene;locus_tag=Dshi_1096
NC_009952.1	RefSeq	CDS	1124071	1124751	.	-	0	ID=cds1090;Name=YP_001532439.1;Parent=gene1113;Note=putative GDSL-like lipase%3B G-D-S-L;Dbxref=Genbank:YP_001532439.1,GeneID:5711064;gbkey=CDS;product=lipolytic protein;protein_id=YP_001532439.1;transl_table=11
NC_009952.1	RefSeq	gene	1124897	1125964	.	-	.	ID=gene1114;Name=Dshi_1097;Dbxref=GeneID:5711065;gbkey=Gene;locus_tag=Dshi_1097
NC_009952.1	RefSeq	CDS	1124897	1125964	.	-	0	ID=cds1091;Name=YP_001532440.1;Parent=gene1114;Note=two YeeE%2FYedE-domains;Dbxref=Genbank:YP_001532440.1,GeneID:5711065;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532440.1;transl_table=11
NC_009952.1	RefSeq	gene	1126077	1127306	.	+	.	ID=gene1115;Name=Dshi_1098;Dbxref=GeneID:5711066;gbkey=Gene;locus_tag=Dshi_1098
NC_009952.1	RefSeq	CDS	1126077	1127306	.	+	0	ID=cds1092;Name=YP_001532441.1;Parent=gene1115;Note=inner membrane single-polypeptide secondary carrier;Dbxref=Genbank:YP_001532441.1,GeneID:5711066;gbkey=CDS;product=major facilitator superfamily protein;protein_id=YP_001532441.1;transl_table=11
NC_009952.1	RefSeq	gene	1127361	1128023	.	+	.	ID=gene1116;Name=msrA2;Dbxref=GeneID:5711067;gbkey=Gene;gene=msrA2;locus_tag=Dshi_1099
NC_009952.1	RefSeq	CDS	1127361	1128023	.	+	0	ID=cds1093;Name=YP_001532442.1;Parent=gene1116;Note=repairs damaged proteins. Methionine sulfoxide in proteins is reduced to methionine.;Dbxref=Genbank:YP_001532442.1,GeneID:5711067;gbkey=CDS;gene=msrA2;product=peptide methionine sulfoxide reductase;protein_id=YP_001532442.1;transl_table=11
NC_009952.1	RefSeq	gene	1128118	1128987	.	+	.	ID=gene1117;Name=prmA;Dbxref=GeneID:5711068;gbkey=Gene;gene=prmA;locus_tag=Dshi_1100
NC_009952.1	RefSeq	CDS	1128118	1128987	.	+	0	ID=cds1094;Name=YP_001532443.1;Parent=gene1117;Note=Methylates ribosomal protein L11;Dbxref=Genbank:YP_001532443.1,GeneID:5711068;gbkey=CDS;gene=prmA;product=ribosomal L11 methyltransferase;protein_id=YP_001532443.1;transl_table=11
NC_009952.1	RefSeq	gene	1129052	1129375	.	+	.	ID=gene1118;Name=Dshi_1101;Dbxref=GeneID:5711069;gbkey=Gene;locus_tag=Dshi_1101
NC_009952.1	RefSeq	CDS	1129052	1129375	.	+	0	ID=cds1095;Name=YP_001532444.1;Parent=gene1118;Dbxref=Genbank:YP_001532444.1,GeneID:5711069;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532444.1;transl_table=11
NC_009952.1	RefSeq	gene	1129452	1129649	.	-	.	ID=gene1119;Name=Dshi_1102;Dbxref=GeneID:5711070;gbkey=Gene;locus_tag=Dshi_1102
NC_009952.1	RefSeq	CDS	1129452	1129649	.	-	0	ID=cds1096;Name=YP_001532445.1;Parent=gene1119;Dbxref=Genbank:YP_001532445.1,GeneID:5711070;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532445.1;transl_table=11
NC_009952.1	RefSeq	gene	1129962	1130492	.	+	.	ID=gene1120;Name=ruvC;Dbxref=GeneID:5711071;gbkey=Gene;gene=ruvC;locus_tag=Dshi_1103
NC_009952.1	RefSeq	CDS	1129962	1130492	.	+	0	ID=cds1097;Name=YP_001532446.1;Parent=gene1120;Note=endonuclease%3B resolves Holliday structures%3B forms a complex of RuvABC%3B the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration%3B RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity;Dbxref=Genbank:YP_001532446.1,GeneID:5711071;gbkey=CDS;gene=ruvC;product=Holliday junction resolvase;protein_id=YP_001532446.1;transl_table=11
NC_009952.1	RefSeq	gene	1130489	1131163	.	+	.	ID=gene1121;Name=ruvA;Dbxref=GeneID:5711072;gbkey=Gene;gene=ruvA;locus_tag=Dshi_1104
NC_009952.1	RefSeq	CDS	1130489	1131163	.	+	0	ID=cds1098;Name=YP_001532447.1;Parent=gene1121;Note=plays an essential role in ATP-dependent branch migration of the Holliday junction;Dbxref=Genbank:YP_001532447.1,GeneID:5711072;gbkey=CDS;gene=ruvA;product=Holliday junction DNA helicase RuvA;protein_id=YP_001532447.1;transl_table=11
NC_009952.1	RefSeq	gene	1131167	1132240	.	+	.	ID=gene1122;Name=ruvB;Dbxref=GeneID:5711073;gbkey=Gene;gene=ruvB;locus_tag=Dshi_1105
NC_009952.1	RefSeq	CDS	1131167	1132240	.	+	0	ID=cds1099;Name=YP_001532448.1;Parent=gene1122;Note=promotes strand exchange during homologous recombination%3B RuvAB complex promotes branch migration%3B RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences%3B forms hexameric rings around opposite DNA arms%3B requires ATP for branch migration and orientation of RuvAB complex determines direction of migration;Dbxref=Genbank:YP_001532448.1,GeneID:5711073;gbkey=CDS;gene=ruvB;product=Holliday junction DNA helicase RuvB;protein_id=YP_001532448.1;transl_table=11
NC_009952.1	RefSeq	gene	1132304	1132930	.	+	.	ID=gene1123;Name=Dshi_1106;Dbxref=GeneID:5711074;gbkey=Gene;locus_tag=Dshi_1106
NC_009952.1	RefSeq	CDS	1132304	1132930	.	+	0	ID=cds1100;Name=YP_001532449.1;Parent=gene1123;Note=conserved in Rhodobacteraceae;Dbxref=Genbank:YP_001532449.1,GeneID:5711074;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532449.1;transl_table=11
NC_009952.1	RefSeq	gene	1132927	1133337	.	+	.	ID=gene1124;Name=Dshi_1107;Dbxref=GeneID:5711075;gbkey=Gene;locus_tag=Dshi_1107
NC_009952.1	RefSeq	CDS	1132927	1133337	.	+	0	ID=cds1101;Name=YP_001532450.1;Parent=gene1124;Note=The significance of this thioesterase to the tol-pal system is unclear;Dbxref=Genbank:YP_001532450.1,GeneID:5711075;gbkey=CDS;product=Pol-Pal system-associated acyl-CoA thioesterase;protein_id=YP_001532450.1;transl_table=11
NC_009952.1	RefSeq	gene	1133433	1134107	.	+	.	ID=gene1125;Name=tolQ;Dbxref=GeneID:5711076;gbkey=Gene;gene=tolQ;locus_tag=Dshi_1108
NC_009952.1	RefSeq	CDS	1133433	1134107	.	+	0	ID=cds1102;Name=YP_001532451.1;Parent=gene1125;Note=outer membrane integrity and transport system Tol-Pal: TolQRAB-Pal;Dbxref=Genbank:YP_001532451.1,GeneID:5711076;gbkey=CDS;gene=tolQ;product=Tol-Pal system protein TolQ;protein_id=YP_001532451.1;transl_table=11
NC_009952.1	RefSeq	gene	1134195	1134599	.	+	.	ID=gene1126;Name=tolR;Dbxref=GeneID:5711077;gbkey=Gene;gene=tolR;locus_tag=Dshi_1109
NC_009952.1	RefSeq	CDS	1134195	1134599	.	+	0	ID=cds1103;Name=YP_001532452.1;Parent=gene1126;Note=outer membrane integrity and transport system Tol-Pal: TolQRAB-Pal;Dbxref=Genbank:YP_001532452.1,GeneID:5711077;gbkey=CDS;gene=tolR;product=biopolymer transport TolR;protein_id=YP_001532452.1;transl_table=11
NC_009952.1	RefSeq	gene	1134607	1135662	.	+	.	ID=gene1127;Name=tolA;Dbxref=GeneID:5711078;gbkey=Gene;gene=tolA;locus_tag=Dshi_1110
NC_009952.1	RefSeq	CDS	1134607	1135662	.	+	0	ID=cds1104;Name=YP_001532453.1;Parent=gene1127;Note=outer membrane integrity and transport system Tol-Pal: TolQRAB-Pal;Dbxref=Genbank:YP_001532453.1,GeneID:5711078;gbkey=CDS;gene=tolA;product=hypothetical protein;protein_id=YP_001532453.1;transl_table=11
NC_009952.1	RefSeq	gene	1135659	1136999	.	+	.	ID=gene1128;Name=tolB;Dbxref=GeneID:5711079;gbkey=Gene;gene=tolB;locus_tag=Dshi_1111
NC_009952.1	RefSeq	CDS	1135659	1136999	.	+	0	ID=cds1105;Name=YP_001532454.1;Parent=gene1128;Note=forms dimers%3B may be involved in cell envelope integrity%3B interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA;Dbxref=Genbank:YP_001532454.1,GeneID:5711079;gbkey=CDS;gene=tolB;product=translocation protein TolB;protein_id=YP_001532454.1;transl_table=11
NC_009952.1	RefSeq	gene	1137066	1137593	.	+	.	ID=gene1129;Name=pal;Dbxref=GeneID:5711080;gbkey=Gene;gene=pal;locus_tag=Dshi_1112
NC_009952.1	RefSeq	CDS	1137066	1137593	.	+	0	ID=cds1106;Name=YP_001532455.1;Parent=gene1129;Note=outer membrane integrity and transport system Tol-Pal: TolQRAB-Pal;Dbxref=Genbank:YP_001532455.1,GeneID:5711080;gbkey=CDS;gene=pal;product=peptidoglycan-associated lipoprotein;protein_id=YP_001532455.1;transl_table=11
NC_009952.1	RefSeq	STS	1137240	1137548	.	+	.	ID=id26;Dbxref=UniSTS:518994,GeneID:5711080;gbkey=STS;gene=pal
NC_009952.1	RefSeq	gene	1137614	1138432	.	+	.	ID=gene1130;Name=Dshi_1113;Dbxref=GeneID:5711081;gbkey=Gene;locus_tag=Dshi_1113
NC_009952.1	RefSeq	CDS	1137614	1138432	.	+	0	ID=cds1107;Name=YP_001532456.1;Parent=gene1130;Note=contains 1 Tetratricopeptide repeat;Dbxref=Genbank:YP_001532456.1,GeneID:5711081;gbkey=CDS;product=Tol-Pal system protein YbgF;protein_id=YP_001532456.1;transl_table=11
NC_009952.1	RefSeq	gene	1138429	1139682	.	+	.	ID=gene1131;Name=tilS;Dbxref=GeneID:5711082;gbkey=Gene;gene=tilS;locus_tag=Dshi_1114
NC_009952.1	RefSeq	CDS	1138429	1139682	.	+	0	ID=cds1108;Name=YP_001532457.1;Parent=gene1131;Note=Ligates Lysine to a tRNA cytidine%2C thus changing the amino acid specificity of the tRNA from methionine to isoleucine;Dbxref=Genbank:YP_001532457.1,GeneID:5711082;gbkey=CDS;gene=tilS;product=tRNA%28Ile%29-lysidine synthetase;protein_id=YP_001532457.1;transl_table=11
NC_009952.1	RefSeq	gene	1139764	1141680	.	+	.	ID=gene1132;Name=ftsH;Dbxref=GeneID:5711083;gbkey=Gene;gene=ftsH;locus_tag=Dshi_1115
NC_009952.1	RefSeq	CDS	1139764	1141680	.	+	0	ID=cds1109;Name=YP_001532458.1;Parent=gene1132;Note=membrane-bound ATP-dependent protease universally conserved in prokaryotes;Dbxref=Genbank:YP_001532458.1,GeneID:5711083;gbkey=CDS;gene=ftsH;product=ATP-dependent metalloprotease FtsH;protein_id=YP_001532458.1;transl_table=11
NC_009952.1	RefSeq	gene	1141820	1142431	.	+	.	ID=gene1133;Name=Dshi_1116;Dbxref=GeneID:5711084;gbkey=Gene;locus_tag=Dshi_1116
NC_009952.1	RefSeq	CDS	1141820	1142431	.	+	0	ID=cds1110;Name=YP_001532459.1;Parent=gene1133;Dbxref=Genbank:YP_001532459.1,GeneID:5711084;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532459.1;transl_table=11
NC_009952.1	RefSeq	gene	1142513	1142929	.	-	.	ID=gene1134;Name=Dshi_1117;Dbxref=GeneID:5711085;gbkey=Gene;locus_tag=Dshi_1117
NC_009952.1	RefSeq	CDS	1142513	1142929	.	-	0	ID=cds1111;Name=YP_001532460.1;Parent=gene1134;Note=thioesterase superfamily protein;Dbxref=Genbank:YP_001532460.1,GeneID:5711085;gbkey=CDS;product=thioesterase superfamily protein;protein_id=YP_001532460.1;transl_table=11
NC_009952.1	RefSeq	gene	1142926	1143639	.	-	.	ID=gene1135;Name=Dshi_1118;Dbxref=GeneID:5711086;gbkey=Gene;locus_tag=Dshi_1118
NC_009952.1	RefSeq	CDS	1142926	1143639	.	-	0	ID=cds1112;Name=YP_001532461.1;Parent=gene1135;Dbxref=Genbank:YP_001532461.1,GeneID:5711086;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532461.1;transl_table=11
NC_009952.1	RefSeq	gene	1143663	1146086	.	-	.	ID=gene1136;Name=Dshi_1119;Dbxref=GeneID:5711087;gbkey=Gene;locus_tag=Dshi_1119
NC_009952.1	RefSeq	CDS	1143663	1146086	.	-	0	ID=cds1113;Name=YP_001532462.1;Parent=gene1136;Note=contains DEAD%2FH associated domain;Dbxref=Genbank:YP_001532462.1,GeneID:5711087;gbkey=CDS;product=DEAD%2FDEAH box helicase;protein_id=YP_001532462.1;transl_table=11
NC_009952.1	RefSeq	gene	1146135	1147442	.	-	.	ID=gene1137;Name=Dshi_1120;Dbxref=GeneID:5711088;gbkey=Gene;locus_tag=Dshi_1120
NC_009952.1	RefSeq	CDS	1146135	1147442	.	-	0	ID=cds1114;Name=YP_001532463.1;Parent=gene1137;Dbxref=Genbank:YP_001532463.1,GeneID:5711088;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532463.1;transl_table=11
NC_009952.1	RefSeq	gene	1147479	1147988	.	-	.	ID=gene1138;Name=Dshi_1121;Dbxref=GeneID:5711089;gbkey=Gene;locus_tag=Dshi_1121
NC_009952.1	RefSeq	CDS	1147479	1147988	.	-	0	ID=cds1115;Name=YP_001532464.1;Parent=gene1138;Note=peptidase A24A prepilin type IV;Dbxref=Genbank:YP_001532464.1,GeneID:5711089;gbkey=CDS;product=peptidase A24A prepilin type IV;protein_id=YP_001532464.1;transl_table=11
NC_009952.1	RefSeq	gene	1147996	1148847	.	-	.	ID=gene1139;Name=Dshi_1122;Dbxref=GeneID:5711090;gbkey=Gene;locus_tag=Dshi_1122
NC_009952.1	RefSeq	CDS	1147996	1148847	.	-	0	ID=cds1116;Name=YP_001532465.1;Parent=gene1139;Dbxref=Genbank:YP_001532465.1,GeneID:5711090;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532465.1;transl_table=11
NC_009952.1	RefSeq	gene	1148895	1149425	.	-	.	ID=gene1140;Name=Dshi_1123;Dbxref=GeneID:5711091;gbkey=Gene;locus_tag=Dshi_1123
NC_009952.1	RefSeq	CDS	1148895	1149425	.	-	0	ID=cds1117;Name=YP_001532466.1;Parent=gene1140;Note=contains 2 TPR domains%2C involved in protein-protein interaction;Dbxref=Genbank:YP_001532466.1,GeneID:5711091;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532466.1;transl_table=11
NC_009952.1	RefSeq	gene	1149478	1150473	.	-	.	ID=gene1141;Name=Dshi_1124;Dbxref=GeneID:5711092;gbkey=Gene;locus_tag=Dshi_1124
NC_009952.1	RefSeq	CDS	1149478	1150473	.	-	0	ID=cds1118;Name=YP_001532467.1;Parent=gene1141;Dbxref=Genbank:YP_001532467.1,GeneID:5711092;gbkey=CDS;product=type II secretion system protein;protein_id=YP_001532467.1;transl_table=11
NC_009952.1	RefSeq	gene	1150478	1151446	.	-	.	ID=gene1142;Name=Dshi_1125;Dbxref=GeneID:5711093;gbkey=Gene;locus_tag=Dshi_1125
NC_009952.1	RefSeq	CDS	1150478	1151446	.	-	0	ID=cds1119;Name=YP_001532468.1;Parent=gene1142;Dbxref=Genbank:YP_001532468.1,GeneID:5711093;gbkey=CDS;product=type II secretion system protein;protein_id=YP_001532468.1;transl_table=11
NC_009952.1	RefSeq	gene	1151449	1152903	.	-	.	ID=gene1143;Name=Dshi_1126;Dbxref=GeneID:5711094;gbkey=Gene;locus_tag=Dshi_1126
NC_009952.1	RefSeq	CDS	1151449	1152903	.	-	0	ID=cds1120;Name=YP_001532469.1;Parent=gene1143;Dbxref=Genbank:YP_001532469.1,GeneID:5711094;gbkey=CDS;product=type II secretion system protein E;protein_id=YP_001532469.1;transl_table=11
NC_009952.1	RefSeq	gene	1152923	1154230	.	-	.	ID=gene1144;Name=Dshi_1127;Dbxref=GeneID:5711095;gbkey=Gene;locus_tag=Dshi_1127
NC_009952.1	RefSeq	CDS	1152923	1154230	.	-	0	ID=cds1121;Name=YP_001532470.1;Parent=gene1144;Dbxref=Genbank:YP_001532470.1,GeneID:5711095;gbkey=CDS;product=response regulator receiver protein;protein_id=YP_001532470.1;transl_table=11
NC_009952.1	RefSeq	gene	1154427	1155065	.	-	.	ID=gene1145;Name=Dshi_1128;Dbxref=GeneID:5711096;gbkey=Gene;locus_tag=Dshi_1128
NC_009952.1	RefSeq	CDS	1154427	1155065	.	-	0	ID=cds1122;Name=YP_001532471.1;Parent=gene1145;Note=It can function as an adhesin and invasin%2C participate in biofilm formation%2C act as both an immune target and evasin%2C and serves as a receptor for several bacteriophages.;Dbxref=Genbank:YP_001532471.1,GeneID:5711096;gbkey=CDS;product=OmpA%2FMotB domain-containing protein;protein_id=YP_001532471.1;transl_table=11
NC_009952.1	RefSeq	gene	1155070	1156494	.	-	.	ID=gene1146;Name=Dshi_1129;Dbxref=GeneID:5711097;gbkey=Gene;locus_tag=Dshi_1129
NC_009952.1	RefSeq	CDS	1155070	1156494	.	-	0	ID=cds1123;Name=YP_001532472.1;Parent=gene1146;Note=Bacterial type II and III secretion system protein;Dbxref=Genbank:YP_001532472.1,GeneID:5711097;gbkey=CDS;product=type II and III secretion system protein;protein_id=YP_001532472.1;transl_table=11
NC_009952.1	RefSeq	gene	1156688	1157530	.	-	.	ID=gene1147;Name=Dshi_1130;Dbxref=GeneID:5711098;gbkey=Gene;locus_tag=Dshi_1130
NC_009952.1	RefSeq	CDS	1156688	1157530	.	-	0	ID=cds1124;Name=YP_001532473.1;Parent=gene1147;Note=Domains: SAF;Dbxref=Genbank:YP_001532473.1,GeneID:5711098;gbkey=CDS;product=SAF domain-containing protein;protein_id=YP_001532473.1;transl_table=11
NC_009952.1	RefSeq	gene	1157706	1157918	.	-	.	ID=gene1148;Name=Dshi_1131;Dbxref=GeneID:5711099;gbkey=Gene;locus_tag=Dshi_1131
NC_009952.1	RefSeq	CDS	1157706	1157918	.	-	0	ID=cds1125;Name=YP_001532474.1;Parent=gene1148;Note=conserved in Rhodobacteraceae;Dbxref=Genbank:YP_001532474.1,GeneID:5711099;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532474.1;transl_table=11
NC_009952.1	RefSeq	gene	1158153	1158365	.	-	.	ID=gene1149;Name=Dshi_1132;Dbxref=GeneID:5711100;gbkey=Gene;locus_tag=Dshi_1132
NC_009952.1	RefSeq	CDS	1158153	1158365	.	-	0	ID=cds1126;Name=YP_001532475.1;Parent=gene1149;Note=conserved in Rhodobacteraceae;Dbxref=Genbank:YP_001532475.1,GeneID:5711100;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532475.1;transl_table=11
NC_009952.1	RefSeq	gene	1158693	1159541	.	+	.	ID=gene1150;Name=Dshi_1133;Dbxref=GeneID:5711101;gbkey=Gene;locus_tag=Dshi_1133
NC_009952.1	RefSeq	CDS	1158693	1159541	.	+	0	ID=cds1127;Name=YP_001532476.1;Parent=gene1150;Note=found in phages%2C type II%2C type III and type IV secretion systems;Dbxref=Genbank:YP_001532476.1,GeneID:5711101;gbkey=CDS;product=lytic transglycosylase catalytic subunit;protein_id=YP_001532476.1;transl_table=11
NC_009952.1	RefSeq	gene	1159632	1160258	.	-	.	ID=gene1151;Name=Dshi_1134;Dbxref=GeneID:5711102;gbkey=Gene;locus_tag=Dshi_1134
NC_009952.1	RefSeq	CDS	1159632	1160258	.	-	0	ID=cds1128;Name=YP_001532477.1;Parent=gene1151;Note=Reaction: Succinyl-CoA %2B a 3-oxo acid %3C%3D%3E succinate %2B a 3-oxoacyl-CoA;Dbxref=Genbank:YP_001532477.1,GeneID:5711102;gbkey=CDS;product=3-oxoacid CoA-transferase subunit B;protein_id=YP_001532477.1;transl_table=11
NC_009952.1	RefSeq	gene	1160285	1161301	.	-	.	ID=gene1152;Name=Dshi_1135;Dbxref=GeneID:5711103;gbkey=Gene;locus_tag=Dshi_1135
NC_009952.1	RefSeq	CDS	1160285	1161301	.	-	0	ID=cds1129;Name=YP_001532478.1;Parent=gene1152;Note=contains putative PAS photoreceptor domain;Dbxref=Genbank:YP_001532478.1,GeneID:5711103;gbkey=CDS;product=putative signal transduction histidine kinase;protein_id=YP_001532478.1;transl_table=11
NC_009952.1	RefSeq	gene	1161319	1162014	.	-	.	ID=gene1153;Name=Dshi_1136;Dbxref=GeneID:5711104;gbkey=Gene;locus_tag=Dshi_1136
NC_009952.1	RefSeq	CDS	1161319	1162014	.	-	0	ID=cds1130;Name=YP_001532479.1;Parent=gene1153;Note=Reaction: Succinyl-CoA %2B a 3-oxo acid %3C%3D%3E succinate %2B a 3-oxoacyl-CoA;Dbxref=Genbank:YP_001532479.1,GeneID:5711104;gbkey=CDS;product=3-oxoacid CoA-transferase subunit A;protein_id=YP_001532479.1;transl_table=11
NC_009952.1	RefSeq	gene	1162114	1164816	.	-	.	ID=gene1154;Name=topA;Dbxref=GeneID:5711105;gbkey=Gene;gene=topA;locus_tag=Dshi_1137
NC_009952.1	RefSeq	CDS	1162114	1164816	.	-	0	ID=cds1131;Name=YP_001532480.1;Parent=gene1154;Note=catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining%2C maintains net negative superhelicity;Dbxref=Genbank:YP_001532480.1,GeneID:5711105;gbkey=CDS;gene=topA;product=DNA topoisomerase I;protein_id=YP_001532480.1;transl_table=11
NC_009952.1	RefSeq	gene	1165063	1166202	.	-	.	ID=gene1155;Name=Dshi_1138;Dbxref=GeneID:5711106;gbkey=Gene;locus_tag=Dshi_1138
NC_009952.1	RefSeq	CDS	1165063	1166202	.	-	0	ID=cds1132;Name=YP_001532481.1;Parent=gene1155;Note=required to protect incoming ssDNA from immediate degradation;Dbxref=Genbank:YP_001532481.1,GeneID:5711106;gbkey=CDS;product=DNA protecting protein DprA;protein_id=YP_001532481.1;transl_table=11
NC_009952.1	RefSeq	gene	1166474	1167895	.	-	.	ID=gene1156;Name=tldD;Dbxref=GeneID:5711107;gbkey=Gene;gene=tldD;locus_tag=Dshi_1139
NC_009952.1	RefSeq	CDS	1166474	1167895	.	-	0	ID=cds1133;Name=YP_001532482.1;Parent=gene1156;Note=Suppresses the inhibitory activity of the carbon storage regulator;Dbxref=Genbank:YP_001532482.1,GeneID:5711107;gbkey=CDS;gene=tldD;product=peptidase U62 modulator of DNA gyrase;protein_id=YP_001532482.1;transl_table=11
NC_009952.1	RefSeq	gene	1168156	1168968	.	+	.	ID=gene1157;Name=ctaC;Dbxref=GeneID:5711108;gbkey=Gene;gene=ctaC;locus_tag=Dshi_1140
NC_009952.1	RefSeq	CDS	1168156	1168968	.	+	0	ID=cds1134;Name=YP_001532483.1;Parent=gene1157;Note=part of oligomeric enzyme complex in the electron transport chain%2C transfers electrons from cytochrome c to the catalytic subunit I via hemA and copper;Dbxref=Genbank:YP_001532483.1,GeneID:5711108;gbkey=CDS;gene=ctaC;product=cytochrome c oxidase subunit II;protein_id=YP_001532483.1;transl_table=11
NC_009952.1	RefSeq	gene	1168989	1169975	.	+	.	ID=gene1158;Name=ctaB;Dbxref=GeneID:5711109;gbkey=Gene;gene=ctaB;locus_tag=Dshi_1141
NC_009952.1	RefSeq	CDS	1168989	1169975	.	+	0	ID=cds1135;Name=YP_001532484.1;Parent=gene1158;Note=converts protoheme IX and farnesyl diphosphate to heme O;Dbxref=Genbank:YP_001532484.1,GeneID:5711109;gbkey=CDS;gene=ctaB;product=protoheme IX farnesyltransferase;protein_id=YP_001532484.1;transl_table=11
NC_009952.1	RefSeq	gene	1169979	1170164	.	+	.	ID=gene1159;Name=Dshi_1142;Dbxref=GeneID:5711110;gbkey=Gene;locus_tag=Dshi_1142
NC_009952.1	RefSeq	CDS	1169979	1170164	.	+	0	ID=cds1136;Name=YP_001532485.1;Parent=gene1159;Dbxref=Genbank:YP_001532485.1,GeneID:5711110;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532485.1;transl_table=11
NC_009952.1	RefSeq	gene	1170161	1170772	.	+	.	ID=gene1160;Name=ctaG;Dbxref=GeneID:5711111;gbkey=Gene;gene=ctaG;locus_tag=Dshi_1143
NC_009952.1	RefSeq	CDS	1170161	1170772	.	+	0	ID=cds1137;Name=YP_001532486.1;Parent=gene1160;Note=involved in the insertion of copper into subunit I of cytochrome C oxidase;Dbxref=Genbank:YP_001532486.1,GeneID:5711111;gbkey=CDS;gene=ctaG;product=cytochrome C oxidase assembly protein;protein_id=YP_001532486.1;transl_table=11
NC_009952.1	RefSeq	gene	1170794	1171600	.	+	.	ID=gene1161;Name=ctaE;Dbxref=GeneID:5711112;gbkey=Gene;gene=ctaE;locus_tag=Dshi_1144
NC_009952.1	RefSeq	CDS	1170794	1171600	.	+	0	ID=cds1138;Name=YP_001532487.1;Parent=gene1161;Note=part of oligomeric enzyme complex in the electron transport chain%2C subunit I and III form the catalytic active compound;Dbxref=Genbank:YP_001532487.1,GeneID:5711112;gbkey=CDS;gene=ctaE;product=cytochrome c oxidase subunit III;protein_id=YP_001532487.1;transl_table=11
NC_009952.1	RefSeq	gene	1171698	1172399	.	+	.	ID=gene1162;Name=Dshi_1145;Dbxref=GeneID:5711113;gbkey=Gene;locus_tag=Dshi_1145
NC_009952.1	RefSeq	CDS	1171698	1172399	.	+	0	ID=cds1139;Name=YP_001532488.1;Parent=gene1162;Note=similar to SURF1 protein%2C involved in cox complex assembly;Dbxref=Genbank:YP_001532488.1,GeneID:5711113;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532488.1;transl_table=11
NC_009952.1	RefSeq	gene	1172413	1173804	.	+	.	ID=gene1163;Name=thrC;Dbxref=GeneID:5711114;gbkey=Gene;gene=thrC;locus_tag=Dshi_1146
NC_009952.1	RefSeq	CDS	1172413	1173804	.	+	0	ID=cds1140;Name=YP_001532489.1;Parent=gene1163;Note=catalyzes the formation of L-threonine from O-phospho-L-homoserine;Dbxref=Genbank:YP_001532489.1,GeneID:5711114;gbkey=CDS;gene=thrC;product=threonine synthase;protein_id=YP_001532489.1;transl_table=11
NC_009952.1	RefSeq	gene	1173801	1175081	.	+	.	ID=gene1164;Name=thrC;Dbxref=GeneID:5711115;gbkey=Gene;gene=thrC;locus_tag=Dshi_1147
NC_009952.1	RefSeq	CDS	1173801	1175081	.	+	0	ID=cds1141;Name=YP_001532490.1;Parent=gene1164;Note=uncharacterized zinc protease M16 family;Dbxref=Genbank:YP_001532490.1,GeneID:5711115;gbkey=CDS;product=processing peptidase;protein_id=YP_001532490.1;transl_table=11
NC_009952.1	RefSeq	gene	1175081	1175665	.	+	.	ID=gene1165;Name=Dshi_1148;Dbxref=GeneID:5711116;gbkey=Gene;locus_tag=Dshi_1148
NC_009952.1	RefSeq	CDS	1175081	1175665	.	+	0	ID=cds1142;Name=YP_001532491.1;Parent=gene1165;Note=protein N-Acetyl-transferase;Dbxref=Genbank:YP_001532491.1,GeneID:5711116;gbkey=CDS;product=N-acetyltransferase GCN5;protein_id=YP_001532491.1;transl_table=11
NC_009952.1	RefSeq	gene	1175811	1176419	.	-	.	ID=gene1166;Name=infC;Dbxref=GeneID:5711117;gbkey=Gene;gene=infC;locus_tag=Dshi_1149
NC_009952.1	RefSeq	CDS	1175811	1176419	.	-	0	ID=cds1143;Name=YP_001532492.1;Parent=gene1166;Note=IF-3 has several functions that are required and promote translation initiation including%3B preventing association of 70S by binding to 30S%3B monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA%28fMet%29 from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites%3B stimulates codon-anticodon interactions at P-site%3B involved in moving mRNA to the P-site%3B and in recycling subunits;Dbxref=Genbank:YP_001532492.1,GeneID:5711117;gbkey=CDS;gene=infC;product=translation initiation factor IF-3;protein_id=YP_001532492.1;transl_table=11
NC_009952.1	RefSeq	gene	1176572	1177432	.	-	.	ID=gene1167;Name=Dshi_1150;Dbxref=GeneID:5711918;gbkey=Gene;locus_tag=Dshi_1150
NC_009952.1	RefSeq	CDS	1176572	1177432	.	-	0	ID=cds1144;Name=YP_001532493.1;Parent=gene1167;Note=Reaction: 2 reduced ferredoxin %2B NADP%2B %3C%3D%3E 2 oxidized ferredoxin %2B NADPH;Dbxref=Genbank:YP_001532493.1,GeneID:5711918;gbkey=CDS;product=ferredoxin--NADP%28%2B%29 reductase;protein_id=YP_001532493.1;transl_table=11
NC_009952.1	RefSeq	gene	1177500	1177916	.	-	.	ID=gene1168;Name=Dshi_1151;Dbxref=GeneID:5711919;gbkey=Gene;locus_tag=Dshi_1151
NC_009952.1	RefSeq	CDS	1177500	1177916	.	-	0	ID=cds1145;Name=YP_001532494.1;Parent=gene1168;Note=conserved in bacteria;Dbxref=Genbank:YP_001532494.1,GeneID:5711919;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532494.1;transl_table=11
NC_009952.1	RefSeq	gene	1177913	1178668	.	-	.	ID=gene1169;Name=cysH;Dbxref=GeneID:5711920;gbkey=Gene;gene=cysH;locus_tag=Dshi_1152
NC_009952.1	RefSeq	CDS	1177913	1178668	.	-	0	ID=cds1146;Name=YP_001532495.1;Parent=gene1169;Note=catalyzes the reduction of 3%27-phosphoadenylyl sulfate into sulfite;Dbxref=Genbank:YP_001532495.1,GeneID:5711920;gbkey=CDS;gene=cysH;product=phosphoadenosine phosphosulfate reductase;protein_id=YP_001532495.1;transl_table=11
NC_009952.1	RefSeq	gene	1178658	1180325	.	-	.	ID=gene1170;Name=cysI;Dbxref=GeneID:5711921;gbkey=Gene;gene=cysI;locus_tag=Dshi_1153
NC_009952.1	RefSeq	CDS	1178658	1180325	.	-	0	ID=cds1147;Name=YP_001532496.1;Parent=gene1170;Note=catalyseses the six-electron reduction of sulphite to sulphide;Dbxref=Genbank:YP_001532496.1,GeneID:5711921;gbkey=CDS;gene=cysI;product=nitrite%2Fsulfite reductase hemoprotein beta-component ferrodoxin domain-containing protein;protein_id=YP_001532496.1;transl_table=11
NC_009952.1	RefSeq	gene	1180350	1180655	.	-	.	ID=gene1171;Name=Dshi_1154;Dbxref=GeneID:5711922;gbkey=Gene;locus_tag=Dshi_1154
NC_009952.1	RefSeq	CDS	1180350	1180655	.	-	0	ID=cds1148;Name=YP_001532497.1;Parent=gene1171;Note=conserved in Alphaproteobacteria;Dbxref=Genbank:YP_001532497.1,GeneID:5711922;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532497.1;transl_table=11
NC_009952.1	RefSeq	gene	1180655	1182040	.	-	.	ID=gene1172;Name=Dshi_1155;Dbxref=GeneID:5711923;gbkey=Gene;locus_tag=Dshi_1155
NC_009952.1	RefSeq	CDS	1180655	1182040	.	-	0	ID=cds1149;Name=YP_001532498.1;Parent=gene1172;Note=For siroheme%3B for sulfite reductase.;Dbxref=Genbank:YP_001532498.1,GeneID:5711923;gbkey=CDS;product=uroporphyrin-III C-methyltransferase;protein_id=YP_001532498.1;transl_table=11
NC_009952.1	RefSeq	gene	1182178	1182645	.	+	.	ID=gene1173;Name=Dshi_1156;Dbxref=GeneID:5711924;gbkey=Gene;locus_tag=Dshi_1156
NC_009952.1	RefSeq	CDS	1182178	1182645	.	+	0	ID=cds1150;Name=YP_001532499.1;Parent=gene1173;Note=Helix-Turn-Helix motif%2C AsnC%2FLrp subfamily%3B AsnC family;Dbxref=Genbank:YP_001532499.1,GeneID:5711924;gbkey=CDS;product=transcriptional regulator;protein_id=YP_001532499.1;transl_table=11
NC_009952.1	RefSeq	gene	1182730	1184175	.	-	.	ID=gene1174;Name=Dshi_1157;Dbxref=GeneID:5711925;gbkey=Gene;locus_tag=Dshi_1157
NC_009952.1	RefSeq	CDS	1182730	1184175	.	-	0	ID=cds1151;Name=YP_001532500.1;Parent=gene1174;Dbxref=Genbank:YP_001532500.1,GeneID:5711925;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532500.1;transl_table=11
NC_009952.1	RefSeq	gene	1184225	1185181	.	-	.	ID=gene1175;Name=rih;Dbxref=GeneID:5711926;gbkey=Gene;gene=rih;locus_tag=Dshi_1158
NC_009952.1	RefSeq	CDS	1184225	1185181	.	-	0	ID=cds1152;Name=YP_001532501.1;Parent=gene1175;Note=preference for inosine%2Furidine;Dbxref=Genbank:YP_001532501.1,GeneID:5711926;gbkey=CDS;gene=rih;product=inosine%2Furidine-preferring nucleoside hydrolase;protein_id=YP_001532501.1;transl_table=11
NC_009952.1	RefSeq	gene	1185626	1186144	.	+	.	ID=gene1176;Name=Dshi_1159;Dbxref=GeneID:5711927;gbkey=Gene;locus_tag=Dshi_1159
NC_009952.1	RefSeq	CDS	1185626	1186144	.	+	0	ID=cds1153;Name=YP_001532502.1;Parent=gene1176;Dbxref=Genbank:YP_001532502.1,GeneID:5711927;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532502.1;transl_table=11
NC_009952.1	RefSeq	gene	1186149	1186988	.	-	.	ID=gene1177;Name=Dshi_1160;Dbxref=GeneID:5711928;gbkey=Gene;locus_tag=Dshi_1160
NC_009952.1	RefSeq	CDS	1186149	1186988	.	-	0	ID=cds1154;Name=YP_001532503.1;Parent=gene1177;Note=contains 2 MazG domains;Dbxref=Genbank:YP_001532503.1,GeneID:5711928;gbkey=CDS;product=MazG family protein;protein_id=YP_001532503.1;transl_table=11
NC_009952.1	RefSeq	gene	1187053	1188213	.	+	.	ID=gene1178;Name=Dshi_1161;Dbxref=GeneID:5711929;gbkey=Gene;locus_tag=Dshi_1161
NC_009952.1	RefSeq	CDS	1187053	1188213	.	+	0	ID=cds1155;Name=YP_001532504.1;Parent=gene1178;Note=Degradation of proteins%2C peptides%2C and glycopeptides;Dbxref=Genbank:YP_001532504.1,GeneID:5711929;gbkey=CDS;product=amidohydrolase;protein_id=YP_001532504.1;transl_table=11
NC_009952.1	RefSeq	gene	1188220	1191789	.	-	.	ID=gene1179;Name=Dshi_1162;Dbxref=GeneID:5711930;gbkey=Gene;locus_tag=Dshi_1162
NC_009952.1	RefSeq	CDS	1188220	1191789	.	-	0	ID=cds1156;Name=YP_001532505.1;Parent=gene1179;Note=RND transporters are involved in multidrug resistance%2C heavy metal resistance. The resistance is performed by H%2B driven export of the toxic compounds.;Dbxref=Genbank:YP_001532505.1,GeneID:5711930;gbkey=CDS;product=acriflavin resistance protein;protein_id=YP_001532505.1;transl_table=11
NC_009952.1	RefSeq	gene	1191786	1192937	.	-	.	ID=gene1180;Name=Dshi_1163;Dbxref=GeneID:5711931;gbkey=Gene;locus_tag=Dshi_1163
NC_009952.1	RefSeq	CDS	1191786	1192937	.	-	0	ID=cds1157;Name=YP_001532506.1;Parent=gene1180;Note=RND transporters are involved in multidrug resistance and heavy metal resistance. The resistance is performed by H%2B driven export of the toxic compounds.%3B RND family%2C MFP subunit;Dbxref=Genbank:YP_001532506.1,GeneID:5711931;gbkey=CDS;product=efflux transporter;protein_id=YP_001532506.1;transl_table=11
NC_009952.1	RefSeq	gene	1193168	1193821	.	+	.	ID=gene1181;Name=Dshi_1164;Dbxref=GeneID:5711932;gbkey=Gene;locus_tag=Dshi_1164
NC_009952.1	RefSeq	CDS	1193168	1193821	.	+	0	ID=cds1158;Name=YP_001532507.1;Parent=gene1181;Note=conserved in Rhodobacteraceae and Rhizobiales;Dbxref=Genbank:YP_001532507.1,GeneID:5711932;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532507.1;transl_table=11
NC_009952.1	RefSeq	gene	1193808	1195160	.	+	.	ID=gene1182;Name=Dshi_1165;Dbxref=GeneID:5711933;gbkey=Gene;locus_tag=Dshi_1165
NC_009952.1	RefSeq	CDS	1193808	1195160	.	+	0	ID=cds1159;Name=YP_001532508.1;Parent=gene1182;Note=contains PQQ repeat domain involved in PQQ binding;Dbxref=Genbank:YP_001532508.1,GeneID:5711933;gbkey=CDS;product=pyrrolo-quinoline quinone;protein_id=YP_001532508.1;transl_table=11
NC_009952.1	RefSeq	gene	1195258	1196730	.	+	.	ID=gene1183;Name=engA;Dbxref=GeneID:5711934;gbkey=Gene;gene=engA;locus_tag=Dshi_1166
NC_009952.1	RefSeq	CDS	1195258	1196730	.	+	0	ID=cds1160;Name=YP_001532509.1;Parent=gene1183;Note=EngA%3B essential Neisserial GTPase%3B synchronizes cellular events by interacting with multiple targets with tandem G-domains%3B overexpression in Escherichia coli suppresses rrmJ mutation%3B structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains;Dbxref=Genbank:YP_001532509.1,GeneID:5711934;gbkey=CDS;gene=engA;product=GTP-binding protein EngA;protein_id=YP_001532509.1;transl_table=11
NC_009952.1	RefSeq	gene	1196727	1198073	.	-	.	ID=gene1184;Name=engA;Dbxref=GeneID:5711935;gbkey=Gene;gene=engA;locus_tag=Dshi_1167
NC_009952.1	RefSeq	CDS	1196727	1198073	.	-	0	ID=cds1161;Name=YP_001532510.1;Parent=gene1184;Note=Ste24p and the proteins related to it define a subfamily of proteins that are likely to function as intracellular%2C membrane-associated zinc metalloproteases;Dbxref=Genbank:YP_001532510.1,GeneID:5711935;gbkey=CDS;product=peptidase M48 Ste24p;protein_id=YP_001532510.1;transl_table=11
NC_009952.1	RefSeq	gene	1198126	1199301	.	+	.	ID=gene1185;Name=Dshi_1168;Dbxref=GeneID:5711936;gbkey=Gene;locus_tag=Dshi_1168
NC_009952.1	RefSeq	CDS	1198126	1199301	.	+	0	ID=cds1162;Name=YP_001532511.1;Parent=gene1185;Note=PLP-dependent enzyme;Dbxref=Genbank:YP_001532511.1,GeneID:5711936;gbkey=CDS;product=class I%2FII aminotransferase;protein_id=YP_001532511.1;transl_table=11
NC_009952.1	RefSeq	gene	1199349	1200617	.	+	.	ID=gene1186;Name=amiC;Dbxref=GeneID:5711937;gbkey=Gene;gene=amiC;locus_tag=Dshi_1169
NC_009952.1	RefSeq	CDS	1199349	1200617	.	+	0	ID=cds1163;Name=YP_001532512.1;Parent=gene1186;Note=cleaves the amide bond between N-acetylmuramoyl and L-amino acids in bacterial cell walls%2C probably involved in cell-wall hydrolysis%2C septation or recycling;Dbxref=Genbank:YP_001532512.1,GeneID:5711937;gbkey=CDS;gene=amiC;product=N-acetylmuramoyl-L-alanine amidase;protein_id=YP_001532512.1;transl_table=11
NC_009952.1	RefSeq	gene	1200611	1201234	.	-	.	ID=gene1187;Name=amiC;Dbxref=GeneID:5711938;gbkey=Gene;gene=amiC;locus_tag=Dshi_1170
NC_009952.1	RefSeq	CDS	1200611	1201234	.	-	0	ID=cds1164;Name=YP_001532513.1;Parent=gene1187;Note=SAM dependent enzyme;Dbxref=Genbank:YP_001532513.1,GeneID:5711938;gbkey=CDS;product=type 11 methyltransferase;protein_id=YP_001532513.1;transl_table=11
NC_009952.1	RefSeq	gene	1201406	1203928	.	+	.	ID=gene1188;Name=Dshi_1171;Dbxref=GeneID:5711939;gbkey=Gene;locus_tag=Dshi_1171
NC_009952.1	RefSeq	CDS	1201406	1203928	.	+	0	ID=cds1165;Name=YP_001532514.1;Parent=gene1188;Note=penicillin-binding proteins are bifunctional proteins consisting of transglycosylase and transpeptidase in the N- and C-terminus respectively%3B 1A family;Dbxref=Genbank:YP_001532514.1,GeneID:5711939;gbkey=CDS;product=penicillin-binding protein;protein_id=YP_001532514.1;transl_table=11
NC_009952.1	RefSeq	gene	1204202	1205329	.	+	.	ID=gene1189;Name=prfB;Dbxref=GeneID:5711940;gbkey=Gene;gene=prfB;locus_tag=Dshi_1172
NC_009952.1	RefSeq	CDS	1204202	1205329	.	+	0	ID=cds1166;Name=YP_001532515.1;Parent=gene1189;Note=recognizes the termination signals UGA and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF2%3B in some organisms control of PrfB protein levels is maintained through a %2B1 ribosomal frameshifting mechanism%3B this protein is similar to release factor 1;Dbxref=Genbank:YP_001532515.1,GeneID:5711940;gbkey=CDS;gene=prfB;product=peptide chain release factor 2;protein_id=YP_001532515.1;transl_table=11
NC_009952.1	RefSeq	gene	1205414	1206421	.	+	.	ID=gene1190;Name=Dshi_1173;Dbxref=GeneID:5711941;gbkey=Gene;locus_tag=Dshi_1173
NC_009952.1	RefSeq	CDS	1205414	1206421	.	+	0	ID=cds1167;Name=YP_001532516.1;Parent=gene1190;Note=proposed to be required for the biosynthesis of the pyrimidine moiety of thiamine;Dbxref=Genbank:YP_001532516.1,GeneID:5711941;gbkey=CDS;product=NMT1%2FTHI5 like domain-containing protein;protein_id=YP_001532516.1;transl_table=11
NC_009952.1	RefSeq	gene	1206505	1207314	.	+	.	ID=gene1191;Name=Dshi_1174;Dbxref=GeneID:5711942;gbkey=Gene;locus_tag=Dshi_1174
NC_009952.1	RefSeq	CDS	1206505	1207314	.	+	0	ID=cds1168;Name=YP_001532517.1;Parent=gene1191;Note=putative inner membrane protein;Dbxref=Genbank:YP_001532517.1,GeneID:5711942;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532517.1;transl_table=11
NC_009952.1	RefSeq	gene	1207399	1207956	.	-	.	ID=gene1192;Name=Dshi_1175;Dbxref=GeneID:5711943;gbkey=Gene;locus_tag=Dshi_1175
NC_009952.1	RefSeq	CDS	1207399	1207956	.	-	0	ID=cds1169;Name=YP_001532518.1;Parent=gene1192;Dbxref=Genbank:YP_001532518.1,GeneID:5711943;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532518.1;transl_table=11
NC_009952.1	RefSeq	gene	1207946	1209274	.	-	.	ID=gene1193;Name=Dshi_1176;Dbxref=GeneID:5711944;gbkey=Gene;locus_tag=Dshi_1176
NC_009952.1	RefSeq	CDS	1207946	1209274	.	-	0	ID=cds1170;Name=YP_001532519.1;Parent=gene1193;Note=catalytic activity has not been demonstrated;Dbxref=Genbank:YP_001532519.1,GeneID:5711944;gbkey=CDS;product=peptidase M23B;protein_id=YP_001532519.1;transl_table=11
NC_009952.1	RefSeq	gene	1209449	1210306	.	-	.	ID=gene1194;Name=Dshi_1177;Dbxref=GeneID:5711945;gbkey=Gene;locus_tag=Dshi_1177
NC_009952.1	RefSeq	CDS	1209449	1210306	.	-	0	ID=cds1171;Name=YP_001532520.1;Parent=gene1194;Dbxref=Genbank:YP_001532520.1,GeneID:5711945;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532520.1;transl_table=11
NC_009952.1	RefSeq	gene	1210336	1210797	.	-	.	ID=gene1195;Name=Dshi_1178;Dbxref=GeneID:5711946;gbkey=Gene;locus_tag=Dshi_1178
NC_009952.1	RefSeq	CDS	1210336	1210797	.	-	0	ID=cds1172;Name=YP_001532521.1;Parent=gene1195;Note=related to alkyl hydroperoxide reductase%2F Thiol specific antioxidant;Dbxref=Genbank:YP_001532521.1,GeneID:5711946;gbkey=CDS;product=alkyl hydroperoxide reductase;protein_id=YP_001532521.1;transl_table=11
NC_009952.1	RefSeq	gene	1210889	1214206	.	+	.	ID=gene1196;Name=Dshi_1179;Dbxref=GeneID:5711947;gbkey=Gene;locus_tag=Dshi_1179
NC_009952.1	RefSeq	CDS	1210889	1214206	.	+	0	ID=cds1173;Name=YP_001532522.1;Parent=gene1196;Note=putative outer membrane protein;Dbxref=Genbank:YP_001532522.1,GeneID:5711947;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532522.1;transl_table=11
NC_009952.1	RefSeq	gene	1214235	1215296	.	+	.	ID=gene1197;Name=queA;Dbxref=GeneID:5711948;gbkey=Gene;gene=queA;locus_tag=Dshi_1180
NC_009952.1	RefSeq	CDS	1214235	1215296	.	+	0	ID=cds1174;Name=YP_001532523.1;Parent=gene1197;Note=Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step;Dbxref=Genbank:YP_001532523.1,GeneID:5711948;gbkey=CDS;gene=queA;product=S-adenosylmethionine--tRNA ribosyltransferase-isomerase;protein_id=YP_001532523.1;transl_table=11
NC_009952.1	RefSeq	gene	1215344	1216738	.	-	.	ID=gene1198;Name=Dshi_1181;Dbxref=GeneID:5711949;gbkey=Gene;locus_tag=Dshi_1181
NC_009952.1	RefSeq	CDS	1215344	1216738	.	-	0	ID=cds1175;Name=YP_001532524.1;Parent=gene1198;Note=Family M20 are Glutamate carboxypeptidases. Peptidase family M25 contains X-His dipeptidases;Dbxref=Genbank:YP_001532524.1,GeneID:5711949;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532524.1;transl_table=11
NC_009952.1	RefSeq	gene	1216936	1218159	.	+	.	ID=gene1199;Name=hemA2;Dbxref=GeneID:5711950;gbkey=Gene;gene=hemA2;locus_tag=Dshi_1182
NC_009952.1	RefSeq	CDS	1216936	1218159	.	+	0	ID=cds1176;Name=YP_001532525.1;Parent=gene1199;Note=catalyzes the formation of 5-aminolevulinate from succinyl-CoA and glycine;Dbxref=Genbank:YP_001532525.1,GeneID:5711950;gbkey=CDS;gene=hemA2;product=5-aminolevulinate synthase;protein_id=YP_001532525.1;transl_table=11
NC_009952.1	RefSeq	gene	1218363	1219592	.	+	.	ID=gene1200;Name=Dshi_1183;Dbxref=GeneID:5711951;gbkey=Gene;locus_tag=Dshi_1183
NC_009952.1	RefSeq	CDS	1218363	1219592	.	+	0	ID=cds1177;Name=YP_001532526.1;Parent=gene1200;Note=conserved in Rhodobacteraceae;Dbxref=Genbank:YP_001532526.1,GeneID:5711951;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532526.1;transl_table=11
NC_009952.1	RefSeq	gene	1219665	1220816	.	+	.	ID=gene1201;Name=ispG;Dbxref=GeneID:5711952;gbkey=Gene;gene=ispG;locus_tag=Dshi_1184
NC_009952.1	RefSeq	CDS	1219665	1220816	.	+	0	ID=cds1178;Name=YP_001532527.1;Parent=gene1201;Note=catalyzes the conversion of 2C-methyl-D-erythritol 2%2C4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate%3B involved in isoprenoid synthesis;Dbxref=Genbank:YP_001532527.1,GeneID:5711952;gbkey=CDS;gene=ispG;product=4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase;protein_id=YP_001532527.1;transl_table=11
NC_009952.1	RefSeq	gene	1220983	1221825	.	-	.	ID=gene1202;Name=ksgA;Dbxref=GeneID:5711953;gbkey=Gene;gene=ksgA;locus_tag=Dshi_1185
NC_009952.1	RefSeq	CDS	1220983	1221825	.	-	0	ID=cds1179;Name=YP_001532528.1;Parent=gene1202;Note=catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine %28S-AdoMet%29 to two adjacent adenosine bases A1518 and A1519 in 16S rRNA%3B mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin;Dbxref=Genbank:YP_001532528.1,GeneID:5711953;gbkey=CDS;gene=ksgA;product=dimethyladenosine transferase;protein_id=YP_001532528.1;transl_table=11
NC_009952.1	RefSeq	gene	1221827	1222810	.	-	.	ID=gene1203;Name=pdxA;Dbxref=GeneID:5711954;gbkey=Gene;gene=pdxA;locus_tag=Dshi_1186
NC_009952.1	RefSeq	CDS	1221827	1222810	.	-	0	ID=cds1180;Name=YP_001532529.1;Parent=gene1203;Note=catalyzes oxidation of 4-%28phosphohydroxy%29-L-threonine into 2-amino-3-oxo-4-%28phosphohydroxy%29butyric acid which decarboxylates to form 1-amino-3-%28phosphohydroxy%29propan-2-one %283-amino-2-oxopropyl phosphate%29;Dbxref=Genbank:YP_001532529.1,GeneID:5711954;gbkey=CDS;gene=pdxA;product=4-hydroxythreonine-4-phosphate dehydrogenase;protein_id=YP_001532529.1;transl_table=11
NC_009952.1	RefSeq	gene	1222807	1224003	.	-	.	ID=gene1204;Name=pdxA;Dbxref=GeneID:5711955;gbkey=Gene;gene=pdxA;locus_tag=Dshi_1187
NC_009952.1	RefSeq	CDS	1222807	1224003	.	-	0	ID=cds1181;Name=YP_001532530.1;Parent=gene1204;Note=contains SurA domain and Peptidyl-prolyl cis-trans isomerase domain%2C periplasmatic;Dbxref=Genbank:YP_001532530.1,GeneID:5711955;gbkey=CDS;product=SurA domain-containing protein;protein_id=YP_001532530.1;transl_table=11
NC_009952.1	RefSeq	gene	1224020	1226170	.	-	.	ID=gene1205;Name=ostA;Dbxref=GeneID:5711956;gbkey=Gene;gene=ostA;locus_tag=Dshi_1188
NC_009952.1	RefSeq	CDS	1224020	1226170	.	-	0	ID=cds1182;Name=YP_001532531.1;Parent=gene1205;Note=involved in outer membrane permeability;Dbxref=Genbank:YP_001532531.1,GeneID:5711956;gbkey=CDS;gene=ostA;product=organic solvent tolerance protein;protein_id=YP_001532531.1;transl_table=11
NC_009952.1	RefSeq	gene	1226167	1227264	.	-	.	ID=gene1206;Name=ostA;Dbxref=GeneID:5711957;gbkey=Gene;gene=ostA;locus_tag=Dshi_1189
NC_009952.1	RefSeq	CDS	1226167	1227264	.	-	0	ID=cds1183;Name=YP_001532532.1;Parent=gene1206;Note=permease YjgP%2FYjgQ family of unknown function;Dbxref=Genbank:YP_001532532.1,GeneID:5711957;gbkey=CDS;product=YjgP%2FYjgQ family permease;protein_id=YP_001532532.1;transl_table=11
NC_009952.1	RefSeq	gene	1227261	1228403	.	-	.	ID=gene1207;Name=Dshi_1190;Dbxref=GeneID:5711958;gbkey=Gene;locus_tag=Dshi_1190
NC_009952.1	RefSeq	CDS	1227261	1228403	.	-	0	ID=cds1184;Name=YP_001532533.1;Parent=gene1207;Note=permease YjgP%2FYjgQ family of unknown function;Dbxref=Genbank:YP_001532533.1,GeneID:5711958;gbkey=CDS;product=YjgP%2FYjgQ family permease;protein_id=YP_001532533.1;transl_table=11
NC_009952.1	RefSeq	gene	1228563	1230029	.	+	.	ID=gene1208;Name=pepA1;Dbxref=GeneID:5711959;gbkey=Gene;gene=pepA1;locus_tag=Dshi_1191
NC_009952.1	RefSeq	CDS	1228563	1230029	.	+	0	ID=cds1185;Name=YP_001532534.1;Parent=gene1208;Note=catalyzes the removal of N-terminal amino acids preferably leucine from various peptides;Dbxref=Genbank:YP_001532534.1,GeneID:5711959;gbkey=CDS;gene=pepA1;product=leucyl aminopeptidase;protein_id=YP_001532534.1;transl_table=11
NC_009952.1	RefSeq	gene	1230035	1230490	.	+	.	ID=gene1209;Name=holC;Dbxref=GeneID:5711960;gbkey=Gene;gene=holC;locus_tag=Dshi_1192
NC_009952.1	RefSeq	CDS	1230035	1230490	.	+	0	ID=cds1186;Name=YP_001532535.1;Parent=gene1209;Note=binds to single-strand binding %28SSB%29 protein and acts as a bridge between the DnaX clamp loader complex and the SSB;Dbxref=Genbank:YP_001532535.1,GeneID:5711960;gbkey=CDS;gene=holC;product=DNA polymerase III subunit chi;protein_id=YP_001532535.1;transl_table=11
NC_009952.1	RefSeq	gene	1230737	1231909	.	-	.	ID=gene1210;Name=Dshi_1193;Dbxref=GeneID:5711961;gbkey=Gene;locus_tag=Dshi_1193
NC_009952.1	RefSeq	CDS	1230737	1231909	.	-	0	ID=cds1187;Name=YP_001532536.1;Parent=gene1210;Note=Cytochrome P450 enzymes are a superfamily of haem-containing mono-oxygenase;Dbxref=Genbank:YP_001532536.1,GeneID:5711961;gbkey=CDS;product=cytochrome P450;protein_id=YP_001532536.1;transl_table=11
NC_009952.1	RefSeq	gene	1231911	1234142	.	-	.	ID=gene1211;Name=Dshi_1194;Dbxref=GeneID:5711962;gbkey=Gene;locus_tag=Dshi_1194
NC_009952.1	RefSeq	CDS	1231911	1234142	.	-	0	ID=cds1188;Name=YP_001532537.1;Parent=gene1211;Note=TRAP gene cluster - dctPQM%3B 4TM%2F12TM fusion protein;Dbxref=Genbank:YP_001532537.1,GeneID:5711962;gbkey=CDS;product=TRAP transporter;protein_id=YP_001532537.1;transl_table=11
NC_009952.1	RefSeq	gene	1234239	1235231	.	-	.	ID=gene1212;Name=Dshi_1195;Dbxref=GeneID:5711963;gbkey=Gene;locus_tag=Dshi_1195
NC_009952.1	RefSeq	CDS	1234239	1235231	.	-	0	ID=cds1189;Name=YP_001532538.1;Parent=gene1212;Note=TRAP gene cluster - dctPQM%3B TAXI family;Dbxref=Genbank:YP_001532538.1,GeneID:5711963;gbkey=CDS;product=TRAP transporter solute receptor;protein_id=YP_001532538.1;transl_table=11
NC_009952.1	RefSeq	gene	1235704	1237050	.	-	.	ID=gene1213;Name=dctD;Dbxref=GeneID:5711964;gbkey=Gene;gene=dctD;locus_tag=Dshi_1196
NC_009952.1	RefSeq	CDS	1235704	1237050	.	-	0	ID=cds1190;Name=YP_001532539.1;Parent=gene1213;Note=Member of the two-component regulatory system dctB%2FdctD involved in the transport of C4-dicarboxylates. When activated by dctB acts in conjunction with sigma-54 to activate the transcription of dctA.%3B Fis family;Dbxref=Genbank:YP_001532539.1,GeneID:5711964;gbkey=CDS;gene=dctD;product=two component%2C sigma-54 specific%2C transcriptional regulator;protein_id=YP_001532539.1;transl_table=11
NC_009952.1	RefSeq	gene	1237047	1238915	.	-	.	ID=gene1214;Name=dctB;Dbxref=GeneID:5711965;gbkey=Gene;gene=dctB;locus_tag=Dshi_1197
NC_009952.1	RefSeq	CDS	1237047	1238915	.	-	0	ID=cds1191;Name=YP_001532540.1;Parent=gene1214;Note=Member of the two-component regulatory system dctB%2FdctD involved in the transport of C4-dicarboxylates. DctB functions as a membrane-associated protein kinase that phosphorylates dctD in response to environmental signals.;Dbxref=Genbank:YP_001532540.1,GeneID:5711965;gbkey=CDS;gene=dctB;product=integral membrane sensor signal transduction histidine kinase;protein_id=YP_001532540.1;transl_table=11
NC_009952.1	RefSeq	gene	1238964	1239965	.	-	.	ID=gene1215;Name=Dshi_1198;Dbxref=GeneID:5711966;gbkey=Gene;locus_tag=Dshi_1198
NC_009952.1	RefSeq	CDS	1238964	1239965	.	-	0	ID=cds1192;Name=YP_001532541.1;Parent=gene1215;Dbxref=Genbank:YP_001532541.1,GeneID:5711966;gbkey=CDS;product=beta-lactamase;protein_id=YP_001532541.1;transl_table=11
NC_009952.1	RefSeq	gene	1240118	1240912	.	+	.	ID=gene1216;Name=suhB1;Dbxref=GeneID:5711967;gbkey=Gene;gene=suhB1;locus_tag=Dshi_1199
NC_009952.1	RefSeq	CDS	1240118	1240912	.	+	0	ID=cds1193;Name=YP_001532542.1;Parent=gene1216;Note=Mg-dependent%2C Reaction: Myo-inositol phosphate %2B H2O %3D myo-inositol %2B phosphate;Dbxref=Genbank:YP_001532542.1,GeneID:5711967;gbkey=CDS;gene=suhB1;product=inositol-phosphate phosphatase;protein_id=YP_001532542.1;transl_table=11
NC_009952.1	RefSeq	gene	1240915	1241691	.	-	.	ID=gene1217;Name=Dshi_1200;Dbxref=GeneID:5711968;gbkey=Gene;locus_tag=Dshi_1200
NC_009952.1	RefSeq	CDS	1240915	1241691	.	-	0	ID=cds1194;Name=YP_001532543.1;Parent=gene1217;Note=putative inner membrane serine protease;Dbxref=Genbank:YP_001532543.1,GeneID:5711968;gbkey=CDS;product=rhomboid family protein;protein_id=YP_001532543.1;transl_table=11
NC_009952.1	RefSeq	gene	1241780	1242331	.	+	.	ID=gene1218;Name=Dshi_1201;Dbxref=GeneID:5711969;gbkey=Gene;locus_tag=Dshi_1201
NC_009952.1	RefSeq	CDS	1241780	1242331	.	+	0	ID=cds1195;Name=YP_001532544.1;Parent=gene1218;Note=2 TPR%2C TPR mediates protein-protein interactions and the assembly of multiprotein complexes;Dbxref=Genbank:YP_001532544.1,GeneID:5711969;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532544.1;transl_table=11
NC_009952.1	RefSeq	gene	1242383	1242468	.	+	.	ID=gene1219;Name=Dshi_6024;Dbxref=GeneID:5711970;gbkey=Gene;locus_tag=Dshi_6024
NC_009952.1	RefSeq	tRNA	1242383	1242468	.	+	.	ID=rna23;Parent=gene1219;Dbxref=GeneID:5711970;codons=2;gbkey=tRNA;product=tRNA-Leu
NC_009952.1	RefSeq	exon	1242383	1242468	.	+	.	ID=id27;Parent=rna23;Dbxref=GeneID:5711970;codons=2;gbkey=tRNA;product=tRNA-Leu
NC_009952.1	RefSeq	gene	1242487	1243116	.	-	.	ID=gene1220;Name=Dshi_1202;Dbxref=GeneID:5711971;gbkey=Gene;locus_tag=Dshi_1202
NC_009952.1	RefSeq	CDS	1242487	1243116	.	-	0	ID=cds1196;Name=YP_001532545.1;Parent=gene1220;Note=contains DnaJ-Domain%2C wich mediats interaction with DnaK in heat shock proteins;Dbxref=Genbank:YP_001532545.1,GeneID:5711971;gbkey=CDS;product=heat shock protein DnaJ domain-containing protein;protein_id=YP_001532545.1;transl_table=11
NC_009952.1	RefSeq	gene	1243189	1243446	.	+	.	ID=gene1221;Name=Dshi_1203;Dbxref=GeneID:5711972;gbkey=Gene;locus_tag=Dshi_1203
NC_009952.1	RefSeq	CDS	1243189	1243446	.	+	0	ID=cds1197;Name=YP_001532546.1;Parent=gene1221;Note=In E. coli overexpression of this protein causes round morphology;Dbxref=Genbank:YP_001532546.1,GeneID:5711972;gbkey=CDS;product=BolA family protein;protein_id=YP_001532546.1;transl_table=11
NC_009952.1	RefSeq	gene	1243456	1243872	.	-	.	ID=gene1222;Name=Dshi_1204;Dbxref=GeneID:5711762;gbkey=Gene;locus_tag=Dshi_1204
NC_009952.1	RefSeq	CDS	1243456	1243872	.	-	0	ID=cds1198;Name=YP_001532547.1;Parent=gene1222;Note=conserved in Rhodobacteraceae;Dbxref=Genbank:YP_001532547.1,GeneID:5711762;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532547.1;transl_table=11
NC_009952.1	RefSeq	gene	1244215	1244763	.	+	.	ID=gene1223;Name=Dshi_1205;Dbxref=GeneID:5711763;gbkey=Gene;locus_tag=Dshi_1205
NC_009952.1	RefSeq	CDS	1244215	1244763	.	+	0	ID=cds1199;Name=YP_001532548.1;Parent=gene1223;Dbxref=Genbank:YP_001532548.1,GeneID:5711763;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532548.1;transl_table=11
NC_009952.1	RefSeq	gene	1245054	1245302	.	-	.	ID=gene1224;Name=Dshi_1206;Dbxref=GeneID:5711764;gbkey=Gene;locus_tag=Dshi_1206
NC_009952.1	RefSeq	CDS	1245054	1245302	.	-	0	ID=cds1200;Name=YP_001532549.1;Parent=gene1224;Dbxref=Genbank:YP_001532549.1,GeneID:5711764;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532549.1;transl_table=11
NC_009952.1	RefSeq	gene	1245310	1246827	.	-	.	ID=gene1225;Name=gatB;Dbxref=GeneID:5711765;gbkey=Gene;gene=gatB;locus_tag=Dshi_1207
NC_009952.1	RefSeq	CDS	1245310	1246827	.	-	0	ID=cds1201;Name=YP_001532550.1;Parent=gene1225;Note=allows the formation of correctly charged Asn-tRNA%28Asn%29 or Gln-tRNA%28Gln%29 through the transamidation of misacylated Asp-tRNA%28Asn%29 or Glu-tRNA%28Gln%29 in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases%3B reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA%28Asn%29 or phospho-Glu-tRNA;Dbxref=Genbank:YP_001532550.1,GeneID:5711765;gbkey=CDS;gene=gatB;product=aspartyl%2Fglutamyl-tRNA amidotransferase subunit B;protein_id=YP_001532550.1;transl_table=11
NC_009952.1	RefSeq	gene	1247009	1247605	.	+	.	ID=gene1226;Name=Dshi_1208;Dbxref=GeneID:5711766;gbkey=Gene;locus_tag=Dshi_1208
NC_009952.1	RefSeq	CDS	1247009	1247605	.	+	0	ID=cds1202;Name=YP_001532551.1;Parent=gene1226;Dbxref=Genbank:YP_001532551.1,GeneID:5711766;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532551.1;transl_table=11
NC_009952.1	RefSeq	gene	1247697	1248803	.	+	.	ID=gene1227;Name=coxC;Dbxref=GeneID:5711767;gbkey=Gene;gene=coxC;locus_tag=Dshi_1209
NC_009952.1	RefSeq	CDS	1247697	1248803	.	+	0	ID=cds1203;Name=YP_001532552.1;Parent=gene1227;Note=integral membrane sensor and DNA-binding protein;Dbxref=Genbank:YP_001532552.1,GeneID:5711767;gbkey=CDS;gene=coxC;product=putative integral membrane sensor protein;protein_id=YP_001532552.1;transl_table=11
NC_009952.1	RefSeq	gene	1249012	1249866	.	+	.	ID=gene1228;Name=coxM;Dbxref=GeneID:5711768;gbkey=Gene;gene=coxM;locus_tag=Dshi_1210
NC_009952.1	RefSeq	CDS	1249012	1249866	.	+	0	ID=cds1204;Name=YP_001532553.1;Parent=gene1228;Note=Aerobic-type carbon monoxide dehydrogenase%2C middle subunit%2C part of heterotrimer coxLMS;Dbxref=Genbank:YP_001532553.1,GeneID:5711768;gbkey=CDS;gene=coxM;product=molybdopterin dehydrogenase FAD-binding;protein_id=YP_001532553.1;transl_table=11
NC_009952.1	RefSeq	gene	1249879	1250370	.	+	.	ID=gene1229;Name=coxS;Dbxref=GeneID:5711769;gbkey=Gene;gene=coxS;locus_tag=Dshi_1211
NC_009952.1	RefSeq	CDS	1249879	1250370	.	+	0	ID=cds1205;Name=YP_001532554.1;Parent=gene1229;Note=Aerobic-type carbon monoxide dehydrogenase%2C small subunit%2C part of heterotrimer coxLMS%2C %282Fe-2S%29-binding;Dbxref=Genbank:YP_001532554.1,GeneID:5711769;gbkey=CDS;gene=coxS;product=%282Fe-2S%29-binding domain-containing protein;protein_id=YP_001532554.1;transl_table=11
NC_009952.1	RefSeq	gene	1250367	1252787	.	+	.	ID=gene1230;Name=coxL2;Dbxref=GeneID:5711770;gbkey=Gene;gene=coxL2;locus_tag=Dshi_1212
NC_009952.1	RefSeq	CDS	1250367	1252787	.	+	0	ID=cds1206;Name=YP_001532555.1;Parent=gene1230;Note=Aerobic-type carbon monoxide dehydrogenase%2C large subunit%2C part of heterotrimer coxLMS;Dbxref=Genbank:YP_001532555.1,GeneID:5711770;gbkey=CDS;gene=coxL2;product=carbon-monoxide dehydrogenase large subunit;protein_id=YP_001532555.1;transl_table=11
NC_009952.1	RefSeq	gene	1252829	1253737	.	+	.	ID=gene1231;Name=coxD;Dbxref=GeneID:5711771;gbkey=Gene;gene=coxD;locus_tag=Dshi_1213
NC_009952.1	RefSeq	CDS	1252829	1253737	.	+	0	ID=cds1207;Name=YP_001532556.1;Parent=gene1231;Note=ATPase activity;Dbxref=Genbank:YP_001532556.1,GeneID:5711771;gbkey=CDS;gene=coxD;product=ATPase;protein_id=YP_001532556.1;transl_table=11
NC_009952.1	RefSeq	gene	1253734	1254912	.	+	.	ID=gene1232;Name=coxE;Dbxref=GeneID:5711772;gbkey=Gene;gene=coxE;locus_tag=Dshi_1214
NC_009952.1	RefSeq	CDS	1253734	1254912	.	+	0	ID=cds1208;Name=YP_001532557.1;Parent=gene1232;Note=Protein containing von Willebrand factor type A %28vWA%29 domain;Dbxref=Genbank:YP_001532557.1,GeneID:5711772;gbkey=CDS;gene=coxE;product=VWA containing CoxE family protein;protein_id=YP_001532557.1;transl_table=11
NC_009952.1	RefSeq	gene	1254912	1255724	.	+	.	ID=gene1233;Name=coxF;Dbxref=GeneID:5711773;gbkey=Gene;gene=coxF;locus_tag=Dshi_1215
NC_009952.1	RefSeq	CDS	1254912	1255724	.	+	0	ID=cds1209;Name=YP_001532558.1;Parent=gene1233;Dbxref=Genbank:YP_001532558.1,GeneID:5711773;gbkey=CDS;gene=coxF;product=hypothetical protein;protein_id=YP_001532558.1;transl_table=11
NC_009952.1	RefSeq	gene	1255823	1256800	.	-	.	ID=gene1234;Name=panE;Dbxref=GeneID:5711774;gbkey=Gene;gene=panE;locus_tag=Dshi_1216
NC_009952.1	RefSeq	CDS	1255823	1256800	.	-	0	ID=cds1210;Name=YP_001532559.1;Parent=gene1234;Note=ketopantoate reductase%3B catalyzes the NADPH reduction of ketopantoate to pantoate%3B functions in pantothenate %28vitamin B5%29 biosynthesis;Dbxref=Genbank:YP_001532559.1,GeneID:5711774;gbkey=CDS;gene=panE;product=2-dehydropantoate 2-reductase;protein_id=YP_001532559.1;transl_table=11
NC_009952.1	RefSeq	gene	1256903	1258444	.	-	.	ID=gene1235;Name=Dshi_1217;Dbxref=GeneID:5711775;gbkey=Gene;locus_tag=Dshi_1217
NC_009952.1	RefSeq	CDS	1256903	1258444	.	-	0	ID=cds1211;Name=YP_001532560.1;Parent=gene1235;Note=putative acyl-coA synthetase;Dbxref=Genbank:YP_001532560.1,GeneID:5711775;gbkey=CDS;product=AMP-dependent synthetase and ligase;protein_id=YP_001532560.1;transl_table=11
NC_009952.1	RefSeq	gene	1258541	1260055	.	-	.	ID=gene1236;Name=Dshi_1218;Dbxref=GeneID:5711776;gbkey=Gene;locus_tag=Dshi_1218
NC_009952.1	RefSeq	CDS	1258541	1260055	.	-	0	ID=cds1212;Name=YP_001532561.1;Parent=gene1236;Dbxref=Genbank:YP_001532561.1,GeneID:5711776;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532561.1;transl_table=11
NC_009952.1	RefSeq	gene	1260068	1260553	.	-	.	ID=gene1237;Name=Dshi_1219;Dbxref=GeneID:5711777;gbkey=Gene;locus_tag=Dshi_1219
NC_009952.1	RefSeq	CDS	1260068	1260553	.	-	0	ID=cds1213;Name=YP_001532562.1;Parent=gene1237;Note=conserved in Rhodobacteraceae;Dbxref=Genbank:YP_001532562.1,GeneID:5711777;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532562.1;transl_table=11
NC_009952.1	RefSeq	gene	1260637	1261623	.	-	.	ID=gene1238;Name=Dshi_1220;Dbxref=GeneID:5711778;gbkey=Gene;locus_tag=Dshi_1220
NC_009952.1	RefSeq	CDS	1260637	1261623	.	-	0	ID=cds1214;Name=YP_001532563.1;Parent=gene1238;Dbxref=Genbank:YP_001532563.1,GeneID:5711778;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532563.1;transl_table=11
NC_009952.1	RefSeq	gene	1261791	1263197	.	+	.	ID=gene1239;Name=Dshi_1221;Dbxref=GeneID:5711779;gbkey=Gene;locus_tag=Dshi_1221
NC_009952.1	RefSeq	CDS	1261791	1263197	.	+	0	ID=cds1215;Name=YP_001532564.1;Parent=gene1239;Note=Helix-Turn-Helix motif%2C XRE family%2C Domain of unknown funktion DUF955%3B XRE family;Dbxref=Genbank:YP_001532564.1,GeneID:5711779;gbkey=CDS;product=transcriptional regulator;protein_id=YP_001532564.1;transl_table=11
NC_009952.1	RefSeq	gene	1263528	1264271	.	-	.	ID=gene1240;Name=Dshi_1222;Dbxref=GeneID:5711780;gbkey=Gene;locus_tag=Dshi_1222
NC_009952.1	RefSeq	CDS	1263528	1264271	.	-	0	ID=cds1216;Name=YP_001532565.1;Parent=gene1240;Note=most enzymes of this family are NAD%2FNADP-dependent oxidoreductases;Dbxref=Genbank:YP_001532565.1,GeneID:5711780;gbkey=CDS;product=short-chain dehydrogenase%2Freductase SDR;protein_id=YP_001532565.1;transl_table=11
NC_009952.1	RefSeq	gene	1264297	1266852	.	-	.	ID=gene1241;Name=pepN;Dbxref=GeneID:5711781;gbkey=Gene;gene=pepN;locus_tag=Dshi_1223
NC_009952.1	RefSeq	CDS	1264297	1266852	.	-	0	ID=cds1217;Name=YP_001532566.1;Parent=gene1241;Note=involved in the degradation of intracellular peptides generated by protein breakdown during normal growth or in response to nutrient starvation%2C Release of an N-terminal amino acid%2C Xaa-%7C-Yaa- from a peptide%2C amide or arylamide. Xaa is preferably Ala%2C but may be most amino acids including Pro %28slow action%29.;Dbxref=Genbank:YP_001532566.1,GeneID:5711781;gbkey=CDS;gene=pepN;product=aminopeptidase N;protein_id=YP_001532566.1;transl_table=11
NC_009952.1	RefSeq	gene	1267060	1267575	.	+	.	ID=gene1242;Name=Dshi_1224;Dbxref=GeneID:5711782;gbkey=Gene;locus_tag=Dshi_1224
NC_009952.1	RefSeq	CDS	1267060	1267575	.	+	0	ID=cds1218;Name=YP_001532567.1;Parent=gene1242;Dbxref=Genbank:YP_001532567.1,GeneID:5711782;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532567.1;transl_table=11
NC_009952.1	RefSeq	gene	1267586	1269130	.	+	.	ID=gene1243;Name=Dshi_1225;Dbxref=GeneID:5711783;gbkey=Gene;locus_tag=Dshi_1225
NC_009952.1	RefSeq	CDS	1267586	1269130	.	+	0	ID=cds1219;Name=YP_001532568.1;Parent=gene1243;Note=Photolyase%2FCryptochrome family protein%2C catalytic activity not proved;Dbxref=Genbank:YP_001532568.1,GeneID:5711783;gbkey=CDS;product=deoxyribodipyrimidine photo-lyase;protein_id=YP_001532568.1;transl_table=11
NC_009952.1	RefSeq	gene	1269139	1269306	.	+	.	ID=gene1244;Name=Dshi_1226;Dbxref=GeneID:5711784;gbkey=Gene;locus_tag=Dshi_1226
NC_009952.1	RefSeq	CDS	1269139	1269306	.	+	0	ID=cds1220;Name=YP_001532569.1;Parent=gene1244;Dbxref=Genbank:YP_001532569.1,GeneID:5711784;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532569.1;transl_table=11
NC_009952.1	RefSeq	gene	1269474	1271648	.	+	.	ID=gene1245;Name=glcB;Dbxref=GeneID:5711785;gbkey=Gene;gene=glcB;locus_tag=Dshi_1227
NC_009952.1	RefSeq	CDS	1269474	1271648	.	+	0	ID=cds1221;Name=YP_001532570.1;Parent=gene1245;Note=catalyzes the formation of malate from glyoxylate and acetyl-CoA;Dbxref=Genbank:YP_001532570.1,GeneID:5711785;gbkey=CDS;gene=glcB;product=malate synthase G;protein_id=YP_001532570.1;transl_table=11
NC_009952.1	RefSeq	gene	1271732	1272154	.	+	.	ID=gene1246;Name=Dshi_1228;Dbxref=GeneID:5711786;gbkey=Gene;locus_tag=Dshi_1228
NC_009952.1	RefSeq	CDS	1271732	1272154	.	+	0	ID=cds1222;Name=YP_001532571.1;Parent=gene1246;Dbxref=Genbank:YP_001532571.1,GeneID:5711786;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532571.1;transl_table=11
NC_009952.1	RefSeq	gene	1272260	1273039	.	+	.	ID=gene1247;Name=Dshi_1229;Dbxref=GeneID:5711787;gbkey=Gene;locus_tag=Dshi_1229
NC_009952.1	RefSeq	CDS	1272260	1273039	.	+	0	ID=cds1223;Name=YP_001532572.1;Parent=gene1247;Note=gamma-glutamyl hydrolase activity;Dbxref=Genbank:YP_001532572.1,GeneID:5711787;gbkey=CDS;product=peptidase C26;protein_id=YP_001532572.1;transl_table=11
NC_009952.1	RefSeq	gene	1273036	1274217	.	-	.	ID=gene1248;Name=Dshi_1230;Dbxref=GeneID:5711788;gbkey=Gene;locus_tag=Dshi_1230
NC_009952.1	RefSeq	CDS	1273036	1274217	.	-	0	ID=cds1224;Name=YP_001532573.1;Parent=gene1248;Note=Catalyzes the cleavage of L-kynurenine and L-3-hydroxykynurenine%2C PLP-dependent;Dbxref=Genbank:YP_001532573.1,GeneID:5711788;gbkey=CDS;product=kynureninase;protein_id=YP_001532573.1;transl_table=11
NC_009952.1	RefSeq	gene	1274344	1275300	.	+	.	ID=gene1249;Name=Dshi_1231;Dbxref=GeneID:5711789;gbkey=Gene;locus_tag=Dshi_1231
NC_009952.1	RefSeq	CDS	1274344	1275300	.	+	0	ID=cds1225;Name=YP_001532574.1;Parent=gene1249;Note=domain weakly conserved;Dbxref=Genbank:YP_001532574.1,GeneID:5711789;gbkey=CDS;product=beta-lactamase domain-containing protein;protein_id=YP_001532574.1;transl_table=11
NC_009952.1	RefSeq	gene	1275516	1275992	.	+	.	ID=gene1250;Name=Dshi_1232;Dbxref=GeneID:5711790;gbkey=Gene;locus_tag=Dshi_1232
NC_009952.1	RefSeq	CDS	1275516	1275992	.	+	0	ID=cds1226;Name=YP_001532575.1;Parent=gene1250;Note=predicted domain weakly conserved;Dbxref=Genbank:YP_001532575.1,GeneID:5711790;gbkey=CDS;product=isoprenylcysteine carboxyl methyltransferase family protein;protein_id=YP_001532575.1;transl_table=11
NC_009952.1	RefSeq	gene	1276126	1277742	.	+	.	ID=gene1251;Name=pntA;Dbxref=GeneID:5711791;gbkey=Gene;gene=pntA;locus_tag=Dshi_1233
NC_009952.1	RefSeq	CDS	1276126	1277742	.	+	0	ID=cds1227;Name=YP_001532576.1;Parent=gene1251;Note=forms a tetramer composed of 2 alpha subunits and 2 beta subunits in the inner membrane%3B involved in catalyzing transfer of hydride ion equivalents between NAD and NADP%3B stereospecific %28AB-specific%29%3B functions as a proton pump by translocating protons from cytoplasm to periplasm;Dbxref=Genbank:YP_001532576.1,GeneID:5711791;gbkey=CDS;gene=pntA;product=NAD%28P%29 transhydrogenase subunit alpha;protein_id=YP_001532576.1;transl_table=11
NC_009952.1	RefSeq	gene	1277755	1279251	.	+	.	ID=gene1252;Name=pntB;Dbxref=GeneID:5711792;gbkey=Gene;gene=pntB;locus_tag=Dshi_1234
NC_009952.1	RefSeq	CDS	1277755	1279251	.	+	0	ID=cds1228;Name=YP_001532577.1;Parent=gene1252;Note=transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane%2C heterodimer pntA%2FB%3B AB-specific;Dbxref=Genbank:YP_001532577.1,GeneID:5711792;gbkey=CDS;gene=pntB;product=NAD%28P%29%28%2B%29 transhydrogenase;protein_id=YP_001532577.1;transl_table=11
NC_009952.1	RefSeq	gene	1279366	1280808	.	+	.	ID=gene1253;Name=xylB1;Dbxref=GeneID:5711793;gbkey=Gene;gene=xylB1;locus_tag=Dshi_1235
NC_009952.1	RefSeq	CDS	1279366	1280808	.	+	0	ID=cds1229;Name=YP_001532578.1;Parent=gene1253;Note=Reaction: ATP %2B D-xylulose %3D ADP %2B D-xylulose 5-phosphate;Dbxref=Genbank:YP_001532578.1,GeneID:5711793;gbkey=CDS;gene=xylB1;product=xylulokinase;protein_id=YP_001532578.1;transl_table=11
NC_009952.1	RefSeq	gene	1280772	1281659	.	-	.	ID=gene1254;Name=dmsC;Dbxref=GeneID:5711794;gbkey=Gene;gene=dmsC;locus_tag=Dshi_1236
NC_009952.1	RefSeq	CDS	1280772	1281659	.	-	0	ID=cds1230;Name=YP_001532579.1;Parent=gene1254;Note=dimethyl sulphoxide reductase is a heterotrimeric enzyme%2C composed of a membrane extrinsic catalytic dimer %28DmsAB%29 and a membrane intrinsic polytopic anchor subunit %28DmsC%29;Dbxref=Genbank:YP_001532579.1,GeneID:5711794;gbkey=CDS;gene=dmsC;product=DMSO reductase anchor subunit;protein_id=YP_001532579.1;transl_table=11
NC_009952.1	RefSeq	gene	1281663	1282409	.	-	.	ID=gene1255;Name=dmsB;Dbxref=GeneID:5711795;gbkey=Gene;gene=dmsB;locus_tag=Dshi_1237
NC_009952.1	RefSeq	CDS	1281663	1282409	.	-	0	ID=cds1231;Name=YP_001532580.1;Parent=gene1255;Note=dimethyl sulphoxide reductase is a heterotrimeric enzyme%2C composed of a membrane extrinsic catalytic dimer %28DmsAB%29 and a membrane intrinsic polytopic anchor subunit %28DmsC%29%2C 4Fe-4S ferredoxin iron-sulfur binding domain protein;Dbxref=Genbank:YP_001532580.1,GeneID:5711795;gbkey=CDS;gene=dmsB;product=4Fe-4S ferredoxin;protein_id=YP_001532580.1;transl_table=11
NC_009952.1	RefSeq	gene	1282492	1285278	.	-	.	ID=gene1256;Name=dmsA2;Dbxref=GeneID:5711796;gbkey=Gene;gene=dmsA2;locus_tag=Dshi_1238
NC_009952.1	RefSeq	CDS	1282492	1285278	.	-	0	ID=cds1232;Name=YP_001532581.1;Parent=gene1256;Note=dimethyl sulphoxide reductase is a heterotrimeric enzyme%2C composed of a membrane extrinsic catalytic dimer %28DmsAB%29 and a membrane intrinsic polytopic anchor subunit %28DmsC%29%2C molybdopterin oxidoreductase Fe4S4 region;Dbxref=Genbank:YP_001532581.1,GeneID:5711796;gbkey=CDS;gene=dmsA2;product=molybdopterin oxidoreductase Fe4S4 region;protein_id=YP_001532581.1;transl_table=11
NC_009952.1	RefSeq	gene	1285260	1287167	.	-	.	ID=gene1257;Name=lacZ;Dbxref=GeneID:5711797;gbkey=Gene;gene=lacZ;locus_tag=Dshi_1239
NC_009952.1	RefSeq	CDS	1285260	1287167	.	-	0	ID=cds1233;Name=YP_001532582.1;Parent=gene1257;Note=Hydrolysis of terminal non-reducing beta-D-galactose residues in beta-D-galactosides%2C homotrimer;Dbxref=Genbank:YP_001532582.1,GeneID:5711797;gbkey=CDS;gene=lacZ;product=beta-galactosidase;protein_id=YP_001532582.1;transl_table=11
NC_009952.1	RefSeq	gene	1287164	1288024	.	-	.	ID=gene1258;Name=lacZ;Dbxref=GeneID:5711798;gbkey=Gene;gene=lacZ;locus_tag=Dshi_1240
NC_009952.1	RefSeq	CDS	1287164	1288024	.	-	0	ID=cds1234;Name=YP_001532583.1;Parent=gene1258;Note=domain found in various proteins;Dbxref=Genbank:YP_001532583.1,GeneID:5711798;gbkey=CDS;product=SMP-30%2Fgluconolaconase%2FLRE domain-containing protein;protein_id=YP_001532583.1;transl_table=11
NC_009952.1	RefSeq	gene	1288021	1288626	.	-	.	ID=gene1259;Name=dgoA;Dbxref=GeneID:5711799;gbkey=Gene;gene=dgoA;locus_tag=Dshi_1241
NC_009952.1	RefSeq	CDS	1288021	1288626	.	-	0	ID=cds1235;Name=YP_001532584.1;Parent=gene1259;Note=Keto-hydroxyglutarate-aldolase%2Fketo-deoxy-phosphogluconate aldolase;Dbxref=Genbank:YP_001532584.1,GeneID:5711799;gbkey=CDS;gene=dgoA;product=KDPG and KHG aldolase;protein_id=YP_001532584.1;transl_table=11
NC_009952.1	RefSeq	gene	1288623	1289519	.	-	.	ID=gene1260;Name=dgoK;Dbxref=GeneID:5711800;gbkey=Gene;gene=dgoK;locus_tag=Dshi_1242
NC_009952.1	RefSeq	CDS	1288623	1289519	.	-	0	ID=cds1236;Name=YP_001532585.1;Parent=gene1260;Note=catalyses the second step in D-galactonate degradation;Dbxref=Genbank:YP_001532585.1,GeneID:5711800;gbkey=CDS;gene=dgoK;product=2-dehydro-3-deoxygalactonokinase;protein_id=YP_001532585.1;transl_table=11
NC_009952.1	RefSeq	gene	1289516	1290292	.	-	.	ID=gene1261;Name=dgoK;Dbxref=GeneID:5711801;gbkey=Gene;gene=dgoK;locus_tag=Dshi_1243
NC_009952.1	RefSeq	CDS	1289516	1290292	.	-	0	ID=cds1237;Name=YP_001532586.1;Parent=gene1261;Note=large family of oxidoreductases%2C NAD%2C NADP-dependent;Dbxref=Genbank:YP_001532586.1,GeneID:5711801;gbkey=CDS;product=short-chain dehydrogenase%2Freductase SDR;protein_id=YP_001532586.1;transl_table=11
NC_009952.1	RefSeq	gene	1290292	1292001	.	-	.	ID=gene1262;Name=ilvD2;Dbxref=GeneID:5711802;gbkey=Gene;gene=ilvD2;locus_tag=Dshi_1244
NC_009952.1	RefSeq	CDS	1290292	1292001	.	-	0	ID=cds1238;Name=YP_001532587.1;Parent=gene1262;Note=catalyzes the formation of 3-methyl-2-oxobutanoate from 2%2C3%2C-dihydroxy-3-methylbutanoate;Dbxref=Genbank:YP_001532587.1,GeneID:5711802;gbkey=CDS;gene=ilvD2;product=dihydroxy-acid dehydratase;protein_id=YP_001532587.1;transl_table=11
NC_009952.1	RefSeq	gene	1292045	1293385	.	-	.	ID=gene1263;Name=melA;Dbxref=GeneID:5711803;gbkey=Gene;gene=melA;locus_tag=Dshi_1245
NC_009952.1	RefSeq	CDS	1292045	1293385	.	-	0	ID=cds1239;Name=YP_001532588.1;Parent=gene1263;Note=glycoside hydrolase family 4 protein%2C Hydrolysis of terminal%2C non-reducing alpha-D-galactose residues%2C NAD and Mn-dependent;Dbxref=Genbank:YP_001532588.1,GeneID:5711803;gbkey=CDS;gene=melA;product=glycoside hydrolase family protein;protein_id=YP_001532588.1;transl_table=11
NC_009952.1	RefSeq	gene	1293382	1294230	.	-	.	ID=gene1264;Name=melA;Dbxref=GeneID:5711804;gbkey=Gene;gene=melA;locus_tag=Dshi_1246
NC_009952.1	RefSeq	CDS	1293382	1294230	.	-	0	ID=cds1240;Name=YP_001532589.1;Parent=gene1264;Note=ABC-type sugar transport system%2C permease component%2C no ATPase in cluster;Dbxref=Genbank:YP_001532589.1,GeneID:5711804;gbkey=CDS;product=binding-protein-dependent transport system inner membrane protein;protein_id=YP_001532589.1;transl_table=11
NC_009952.1	RefSeq	gene	1294232	1295158	.	-	.	ID=gene1265;Name=Dshi_1247;Dbxref=GeneID:5711805;gbkey=Gene;locus_tag=Dshi_1247
NC_009952.1	RefSeq	CDS	1294232	1295158	.	-	0	ID=cds1241;Name=YP_001532590.1;Parent=gene1265;Note=ABC-type sugar transport system%2C permease component%2C no ATPase in cluster;Dbxref=Genbank:YP_001532590.1,GeneID:5711805;gbkey=CDS;product=binding-protein-dependent transport system inner membrane protein;protein_id=YP_001532590.1;transl_table=11
NC_009952.1	RefSeq	gene	1295236	1296480	.	-	.	ID=gene1266;Name=Dshi_1248;Dbxref=GeneID:5711806;gbkey=Gene;locus_tag=Dshi_1248
NC_009952.1	RefSeq	CDS	1295236	1296480	.	-	0	ID=cds1242;Name=YP_001532591.1;Parent=gene1266;Note=ABC-type sugar transport system%2C ligand binding component%2C no ATPase in cluster;Dbxref=Genbank:YP_001532591.1,GeneID:5711806;gbkey=CDS;product=family 1 extracellular solute-binding protein;protein_id=YP_001532591.1;transl_table=11
NC_009952.1	RefSeq	gene	1296622	1297437	.	+	.	ID=gene1267;Name=Dshi_1249;Dbxref=GeneID:5711807;gbkey=Gene;locus_tag=Dshi_1249
NC_009952.1	RefSeq	CDS	1296622	1297437	.	+	0	ID=cds1243;Name=YP_001532592.1;Parent=gene1267;Note=Helix-Turn-Helix motif%2C iclR subfamily%3B IclR family;Dbxref=Genbank:YP_001532592.1,GeneID:5711807;gbkey=CDS;product=transcriptional regulator;protein_id=YP_001532592.1;transl_table=11
NC_009952.1	RefSeq	gene	1297453	1298508	.	+	.	ID=gene1268;Name=Dshi_1250;Dbxref=GeneID:5711808;gbkey=Gene;locus_tag=Dshi_1250
NC_009952.1	RefSeq	CDS	1297453	1298508	.	+	0	ID=cds1244;Name=YP_001532593.1;Parent=gene1268;Note=ABC transporter %28importer%29 gene cluster %28disrupted%29: ATP binding cassette %28ABC%29 domain%3B part of a heterotetramer;Dbxref=Genbank:YP_001532593.1,GeneID:5711808;gbkey=CDS;product=ABC transporter-like protein;protein_id=YP_001532593.1;transl_table=11
NC_009952.1	RefSeq	gene	1298515	1298802	.	-	.	ID=gene1269;Name=Dshi_1251;Dbxref=GeneID:5711809;gbkey=Gene;locus_tag=Dshi_1251
NC_009952.1	RefSeq	CDS	1298515	1298802	.	-	0	ID=cds1245;Name=YP_001532594.1;Parent=gene1269;Dbxref=Genbank:YP_001532594.1,GeneID:5711809;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532594.1;transl_table=11
NC_009952.1	RefSeq	gene	1299255	1299977	.	-	.	ID=gene1270;Name=Dshi_1252;Dbxref=GeneID:5711810;gbkey=Gene;locus_tag=Dshi_1252
NC_009952.1	RefSeq	CDS	1299255	1299977	.	-	0	ID=cds1246;Name=YP_001532595.1;Parent=gene1270;Dbxref=Genbank:YP_001532595.1,GeneID:5711810;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532595.1;transl_table=11
NC_009952.1	RefSeq	gene	1300089	1300952	.	+	.	ID=gene1271;Name=Dshi_1253;Dbxref=GeneID:5711811;gbkey=Gene;locus_tag=Dshi_1253
NC_009952.1	RefSeq	CDS	1300089	1300952	.	+	0	ID=cds1247;Name=YP_001532596.1;Parent=gene1271;Note=putative protein-phosphotyrosine-phosphatase activity%2C ArsR family regulators are sensitive to metal ions%3B ArsR family;Dbxref=Genbank:YP_001532596.1,GeneID:5711811;gbkey=CDS;product=transcriptional regulator;protein_id=YP_001532596.1;transl_table=11
NC_009952.1	RefSeq	gene	1300949	1301971	.	+	.	ID=gene1272;Name=Dshi_1254;Dbxref=GeneID:5711812;gbkey=Gene;locus_tag=Dshi_1254
NC_009952.1	RefSeq	CDS	1300949	1301971	.	+	0	ID=cds1248;Name=YP_001532597.1;Parent=gene1272;Note=tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis%3B type I;Dbxref=Genbank:YP_001532597.1,GeneID:5711812;gbkey=CDS;product=glyceraldehyde-3-phosphate dehydrogenase;protein_id=YP_001532597.1;transl_table=11
NC_009952.1	RefSeq	gene	1301968	1303236	.	+	.	ID=gene1273;Name=Dshi_1255;Dbxref=GeneID:5711813;gbkey=Gene;locus_tag=Dshi_1255
NC_009952.1	RefSeq	CDS	1301968	1303236	.	+	0	ID=cds1249;Name=YP_001532598.1;Parent=gene1273;Note=The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients;Dbxref=Genbank:YP_001532598.1,GeneID:5711813;gbkey=CDS;product=major facilitator superfamily protein;protein_id=YP_001532598.1;transl_table=11
NC_009952.1	RefSeq	gene	1303304	1303924	.	+	.	ID=gene1274;Name=Dshi_1256;Dbxref=GeneID:5711814;gbkey=Gene;locus_tag=Dshi_1256
NC_009952.1	RefSeq	CDS	1303304	1303924	.	+	0	ID=cds1250;Name=YP_001532599.1;Parent=gene1274;Note=the exo genes are involved in exopolysaccharide biosynthesis%2C exoD of Rhizobium meliloti encodes a function needed for alfalfa nodule invasion;Dbxref=Genbank:YP_001532599.1,GeneID:5711814;gbkey=CDS;product=exopolysaccharide synthesis ExoD;protein_id=YP_001532599.1;transl_table=11
NC_009952.1	RefSeq	gene	1303935	1304216	.	-	.	ID=gene1275;Name=Dshi_1257;Dbxref=GeneID:5711815;gbkey=Gene;locus_tag=Dshi_1257
NC_009952.1	RefSeq	CDS	1303935	1304216	.	-	0	ID=cds1251;Name=YP_001532600.1;Parent=gene1275;Dbxref=Genbank:YP_001532600.1,GeneID:5711815;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532600.1;transl_table=11
NC_009952.1	RefSeq	gene	1304262	1305005	.	+	.	ID=gene1276;Name=Dshi_1258;Dbxref=GeneID:5711816;gbkey=Gene;locus_tag=Dshi_1258
NC_009952.1	RefSeq	CDS	1304262	1305005	.	+	0	ID=cds1252;Name=YP_001532601.1;Parent=gene1276;Note=most enzymes of this family are NAD%2FNADP-dependent oxidoreductases;Dbxref=Genbank:YP_001532601.1,GeneID:5711816;gbkey=CDS;product=short-chain dehydrogenase%2Freductase SDR;protein_id=YP_001532601.1;transl_table=11
NC_009952.1	RefSeq	gene	1305092	1307596	.	+	.	ID=gene1277;Name=Dshi_1259;Dbxref=GeneID:5711817;gbkey=Gene;locus_tag=Dshi_1259
NC_009952.1	RefSeq	CDS	1305092	1307596	.	+	0	ID=cds1253;Name=YP_001532602.1;Parent=gene1277;Dbxref=Genbank:YP_001532602.1,GeneID:5711817;gbkey=CDS;product=heavy metal translocating P-type ATPase;protein_id=YP_001532602.1;transl_table=11
NC_009952.1	RefSeq	gene	1307607	1308002	.	+	.	ID=gene1278;Name=Dshi_1260;Dbxref=GeneID:5711818;gbkey=Gene;locus_tag=Dshi_1260
NC_009952.1	RefSeq	CDS	1307607	1308002	.	+	0	ID=cds1254;Name=YP_001532603.1;Parent=gene1278;Note=contains winged helix DNA-binding motif%3B MerR family;Dbxref=Genbank:YP_001532603.1,GeneID:5711818;gbkey=CDS;product=transcriptional regulator;protein_id=YP_001532603.1;transl_table=11
NC_009952.1	RefSeq	gene	1308092	1309300	.	+	.	ID=gene1279;Name=gltS;Dbxref=GeneID:5711819;gbkey=Gene;gene=gltS;locus_tag=Dshi_1261
NC_009952.1	RefSeq	CDS	1308092	1309300	.	+	0	ID=cds1255;Name=YP_001532604.1;Parent=gene1279;Note=sodium-dependent uptake of extracellular glutamate;Dbxref=Genbank:YP_001532604.1,GeneID:5711819;gbkey=CDS;gene=gltS;product=sodium%2Fglutamate symporter;protein_id=YP_001532604.1;transl_table=11
NC_009952.1	RefSeq	gene	1309307	1312360	.	-	.	ID=gene1280;Name=Dshi_1262;Dbxref=GeneID:5711820;gbkey=Gene;locus_tag=Dshi_1262
NC_009952.1	RefSeq	CDS	1309307	1312360	.	-	0	ID=cds1256;Name=YP_001532605.1;Parent=gene1280;Note=RND transporters are involved in multidrug resistance%2C heavy metal resistance. The resistance is performed by H%2B driven export of the toxic compounds.;Dbxref=Genbank:YP_001532605.1,GeneID:5711820;gbkey=CDS;product=acriflavin resistance protein;protein_id=YP_001532605.1;transl_table=11
NC_009952.1	RefSeq	gene	1312365	1313612	.	-	.	ID=gene1281;Name=Dshi_1263;Dbxref=GeneID:5711821;gbkey=Gene;locus_tag=Dshi_1263
NC_009952.1	RefSeq	CDS	1312365	1313612	.	-	0	ID=cds1257;Name=YP_001532606.1;Parent=gene1281;Note=RND transporters are involved in multidrug resistance and heavy metal resistance. The resistance is performed by H%2B driven export of the toxic compounds.%3B RND family%2C MFP subunit;Dbxref=Genbank:YP_001532606.1,GeneID:5711821;gbkey=CDS;product=efflux transporter;protein_id=YP_001532606.1;transl_table=11
NC_009952.1	RefSeq	gene	1313689	1314135	.	+	.	ID=gene1282;Name=Dshi_1264;Dbxref=GeneID:5711822;gbkey=Gene;locus_tag=Dshi_1264
NC_009952.1	RefSeq	CDS	1313689	1314135	.	+	0	ID=cds1258;Name=YP_001532607.1;Parent=gene1282;Note=two membrane helix type ion channel;Dbxref=Genbank:YP_001532607.1,GeneID:5711822;gbkey=CDS;product=ion transport 2 domain-containing protein;protein_id=YP_001532607.1;transl_table=11
NC_009952.1	RefSeq	gene	1314155	1315138	.	-	.	ID=gene1283;Name=idhA;Dbxref=GeneID:5711823;gbkey=Gene;gene=idhA;locus_tag=Dshi_1265
NC_009952.1	RefSeq	CDS	1314155	1315138	.	-	0	ID=cds1259;Name=YP_001532608.1;Parent=gene1283;Note=carbohydrate degradation;Dbxref=Genbank:YP_001532608.1,GeneID:5711823;gbkey=CDS;gene=idhA;product=inositol 2-dehydrogenase;protein_id=YP_001532608.1;transl_table=11
NC_009952.1	RefSeq	gene	1315135	1315977	.	-	.	ID=gene1284;Name=fbaA;Dbxref=GeneID:5711824;gbkey=Gene;gene=fbaA;locus_tag=Dshi_1266
NC_009952.1	RefSeq	CDS	1315135	1315977	.	-	0	ID=cds1260;Name=YP_001532609.1;Parent=gene1284;Note=zinc-dependent%2C homodimeric enzyme;Dbxref=Genbank:YP_001532609.1,GeneID:5711824;gbkey=CDS;gene=fbaA;product=ketose-bisphosphate aldolase;protein_id=YP_001532609.1;transl_table=11
NC_009952.1	RefSeq	gene	1315974	1316834	.	-	.	ID=gene1285;Name=iolB;Dbxref=GeneID:5711825;gbkey=Gene;gene=iolB;locus_tag=Dshi_1267
NC_009952.1	RefSeq	CDS	1315974	1316834	.	-	0	ID=cds1261;Name=YP_001532610.1;Parent=gene1285;Dbxref=Genbank:YP_001532610.1,GeneID:5711825;gbkey=CDS;gene=iolB;product=hypothetical protein;protein_id=YP_001532610.1;transl_table=11
NC_009952.1	RefSeq	gene	1316838	1317839	.	-	.	ID=gene1286;Name=iolC;Dbxref=GeneID:5711826;gbkey=Gene;gene=iolC;locus_tag=Dshi_1268
NC_009952.1	RefSeq	CDS	1316838	1317839	.	-	0	ID=cds1262;Name=YP_001532611.1;Parent=gene1286;Note=putative enzyme involved in myo-inositol catabolism;Dbxref=Genbank:YP_001532611.1,GeneID:5711826;gbkey=CDS;gene=iolC;product=PfkB domain-containing protein;protein_id=YP_001532611.1;transl_table=11
NC_009952.1	RefSeq	gene	1317836	1319701	.	-	.	ID=gene1287;Name=iolD;Dbxref=GeneID:5711827;gbkey=Gene;gene=iolD;locus_tag=Dshi_1269
NC_009952.1	RefSeq	CDS	1317836	1319701	.	-	0	ID=cds1263;Name=YP_001532612.1;Parent=gene1287;Note=putative enzyme involved in myo-inositol catabolism%2C Thiamine-dependent;Dbxref=Genbank:YP_001532612.1,GeneID:5711827;gbkey=CDS;gene=iolD;product=thiamine pyrophosphate protein central region;protein_id=YP_001532612.1;transl_table=11
NC_009952.1	RefSeq	gene	1319800	1320918	.	+	.	ID=gene1288;Name=Dshi_1270;Dbxref=GeneID:5711828;gbkey=Gene;locus_tag=Dshi_1270
NC_009952.1	RefSeq	CDS	1319800	1320918	.	+	0	ID=cds1264;Name=YP_001532613.1;Parent=gene1288;Note=NAD-dependent oxidoreductase;Dbxref=Genbank:YP_001532613.1,GeneID:5711828;gbkey=CDS;product=oxidoreductase domain-containing protein;protein_id=YP_001532613.1;transl_table=11
NC_009952.1	RefSeq	gene	1320915	1321811	.	+	.	ID=gene1289;Name=Dshi_1271;Dbxref=GeneID:5711829;gbkey=Gene;locus_tag=Dshi_1271
NC_009952.1	RefSeq	CDS	1320915	1321811	.	+	0	ID=cds1265;Name=YP_001532614.1;Parent=gene1289;Note=putative enzyme involved in myo-inositol catabolism;Dbxref=Genbank:YP_001532614.1,GeneID:5711829;gbkey=CDS;product=xylose isomerase domain-containing protein;protein_id=YP_001532614.1;transl_table=11
NC_009952.1	RefSeq	gene	1321819	1322952	.	+	.	ID=gene1290;Name=Dshi_1272;Dbxref=GeneID:5711830;gbkey=Gene;locus_tag=Dshi_1272
NC_009952.1	RefSeq	CDS	1321819	1322952	.	+	0	ID=cds1266;Name=YP_001532615.1;Parent=gene1290;Note=NAD-dependent oxidoreductase;Dbxref=Genbank:YP_001532615.1,GeneID:5711830;gbkey=CDS;product=oxidoreductase domain-containing protein;protein_id=YP_001532615.1;transl_table=11
NC_009952.1	RefSeq	gene	1322983	1323981	.	-	.	ID=gene1291;Name=Dshi_1273;Dbxref=GeneID:5711831;gbkey=Gene;locus_tag=Dshi_1273
NC_009952.1	RefSeq	CDS	1322983	1323981	.	-	0	ID=cds1267;Name=YP_001532616.1;Parent=gene1291;Note=Helix-Turn-Helix motif%2C Sugar -binding domain%3B LacI family;Dbxref=Genbank:YP_001532616.1,GeneID:5711831;gbkey=CDS;product=transcriptional regulator;protein_id=YP_001532616.1;transl_table=11
NC_009952.1	RefSeq	gene	1324124	1325101	.	+	.	ID=gene1292;Name=Dshi_1274;Dbxref=GeneID:5711832;gbkey=Gene;locus_tag=Dshi_1274
NC_009952.1	RefSeq	CDS	1324124	1325101	.	+	0	ID=cds1268;Name=YP_001532617.1;Parent=gene1292;Note=ATPase gene cluster: periplasmatic binding component%2C permease component%2C ATPase component;Dbxref=Genbank:YP_001532617.1,GeneID:5711832;gbkey=CDS;product=periplasmic-binding protein%2FLacI transcriptional regulator;protein_id=YP_001532617.1;transl_table=11
NC_009952.1	RefSeq	gene	1325167	1326291	.	+	.	ID=gene1293;Name=Dshi_1275;Dbxref=GeneID:5711833;gbkey=Gene;locus_tag=Dshi_1275
NC_009952.1	RefSeq	CDS	1325167	1326291	.	+	0	ID=cds1269;Name=YP_001532618.1;Parent=gene1293;Note=ATPase gene cluster: periplasmatic binding component%2C permease component%2C ATPase component;Dbxref=Genbank:YP_001532618.1,GeneID:5711833;gbkey=CDS;product=monosaccharide-transporting ATPase;protein_id=YP_001532618.1;transl_table=11
NC_009952.1	RefSeq	gene	1326293	1327087	.	+	.	ID=gene1294;Name=Dshi_1276;Dbxref=GeneID:5711834;gbkey=Gene;locus_tag=Dshi_1276
NC_009952.1	RefSeq	CDS	1326293	1327087	.	+	0	ID=cds1270;Name=YP_001532619.1;Parent=gene1294;Note=ATPase gene cluster: periplasmatic binding component%2C permease component%2C ATPase component;Dbxref=Genbank:YP_001532619.1,GeneID:5711834;gbkey=CDS;product=ABC transporter-like protein;protein_id=YP_001532619.1;transl_table=11
NC_009952.1	RefSeq	gene	1327074	1327316	.	+	.	ID=gene1295;Name=Dshi_1277;Dbxref=GeneID:5711835;gbkey=Gene;locus_tag=Dshi_1277
NC_009952.1	RefSeq	CDS	1327074	1327316	.	+	0	ID=cds1271;Name=YP_001532620.1;Parent=gene1295;Dbxref=Genbank:YP_001532620.1,GeneID:5711835;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532620.1;transl_table=11
NC_009952.1	RefSeq	gene	1327313	1328482	.	+	.	ID=gene1296;Name=Dshi_1278;Dbxref=GeneID:5711836;gbkey=Gene;locus_tag=Dshi_1278
NC_009952.1	RefSeq	CDS	1327313	1328482	.	+	0	ID=cds1272;Name=YP_001532621.1;Parent=gene1296;Dbxref=Genbank:YP_001532621.1,GeneID:5711836;gbkey=CDS;product=phytanoyl-CoA dioxygenase;protein_id=YP_001532621.1;transl_table=11
NC_009952.1	RefSeq	gene	1328494	1329306	.	+	.	ID=gene1297;Name=iolB2;Dbxref=GeneID:5711837;gbkey=Gene;gene=iolB2;locus_tag=Dshi_1279
NC_009952.1	RefSeq	CDS	1328494	1329306	.	+	0	ID=cds1273;Name=YP_001532622.1;Parent=gene1297;Dbxref=Genbank:YP_001532622.1,GeneID:5711837;gbkey=CDS;gene=iolB2;product=myo-inositol catabolism IolB domain-containing protein;protein_id=YP_001532622.1;transl_table=11
NC_009952.1	RefSeq	gene	1329323	1330588	.	-	.	ID=gene1298;Name=Dshi_1280;Dbxref=GeneID:5711838;gbkey=Gene;locus_tag=Dshi_1280
NC_009952.1	RefSeq	CDS	1329323	1330588	.	-	0	ID=cds1274;Name=YP_001532623.1;Parent=gene1298;Note=domain is found in amino transferases%2C and other enzymes including cysteine desulphurase%2C PLP dependent enzyme;Dbxref=Genbank:YP_001532623.1,GeneID:5711838;gbkey=CDS;product=class V aminotransferase;protein_id=YP_001532623.1;transl_table=11
NC_009952.1	RefSeq	gene	1330881	1332578	.	+	.	ID=gene1299;Name=fdhB;Dbxref=GeneID:5711839;gbkey=Gene;gene=fdhB;locus_tag=Dshi_1281
NC_009952.1	RefSeq	CDS	1330881	1332578	.	+	0	ID=cds1275;Name=YP_001532624.1;Parent=gene1299;Note=high similarity to Respiratory-chain NADH dehydrogenase domain 24 kDa and 51 kDa subunits%28PMID:2187144%29;Dbxref=Genbank:YP_001532624.1,GeneID:5711839;gbkey=CDS;gene=fdhB;product=respiratory-chain NADH dehydrogenase domain 51 kDa subunit;protein_id=YP_001532624.1;transl_table=11
NC_009952.1	RefSeq	gene	1332581	1335382	.	+	.	ID=gene1300;Name=fdhA;Dbxref=GeneID:5711840;gbkey=Gene;gene=fdhA;locus_tag=Dshi_1282
NC_009952.1	RefSeq	CDS	1332581	1335382	.	+	0	ID=cds1276;Name=YP_001532625.1;Parent=gene1300;Note=complex with fdhB%2C Molybdopterin oxidoreductase%2C contains Fe-S clusters;Dbxref=Genbank:YP_001532625.1,GeneID:5711840;gbkey=CDS;gene=fdhA;product=formate dehydrogenase subunit alpha;protein_id=YP_001532625.1;transl_table=11
NC_009952.1	RefSeq	gene	1335512	1337179	.	+	.	ID=gene1301;Name=fhs;Dbxref=GeneID:5711841;gbkey=Gene;gene=fhs;locus_tag=Dshi_1283
NC_009952.1	RefSeq	CDS	1335512	1337179	.	+	0	ID=cds1277;Name=YP_001532626.1;Parent=gene1301;Note=catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate;Dbxref=Genbank:YP_001532626.1,GeneID:5711841;gbkey=CDS;gene=fhs;product=formate--tetrahydrofolate ligase;protein_id=YP_001532626.1;transl_table=11
NC_009952.1	RefSeq	gene	1337238	1337558	.	+	.	ID=gene1302;Name=Dshi_1284;Dbxref=GeneID:5711842;gbkey=Gene;locus_tag=Dshi_1284
NC_009952.1	RefSeq	CDS	1337238	1337558	.	+	0	ID=cds1278;Name=YP_001532627.1;Parent=gene1302;Dbxref=Genbank:YP_001532627.1,GeneID:5711842;gbkey=CDS;product=chorismate mutase related enzyme;protein_id=YP_001532627.1;transl_table=11
NC_009952.1	RefSeq	gene	1337555	1338454	.	+	.	ID=gene1303;Name=folD;Dbxref=GeneID:5711843;gbkey=Gene;gene=folD;locus_tag=Dshi_1285
NC_009952.1	RefSeq	CDS	1337555	1338454	.	+	0	ID=cds1279;Name=YP_001532628.1;Parent=gene1303;Note=catalyzes the formation of 5%2C10-methenyltetrahydrofolate from 5%2C10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5%2C10-methenyltetrahydrofolate;Dbxref=Genbank:YP_001532628.1,GeneID:5711843;gbkey=CDS;gene=folD;product=bifunctional 5%2C10-methylene-tetrahydrofolate dehydrogenase%2F 5%2C10-methylene-tetrahydrofolate cyclohydrolase;protein_id=YP_001532628.1;transl_table=11
NC_009952.1	RefSeq	gene	1338659	1339942	.	+	.	ID=gene1304;Name=Dshi_1286;Dbxref=GeneID:5711844;gbkey=Gene;locus_tag=Dshi_1286
NC_009952.1	RefSeq	CDS	1338659	1339942	.	+	0	ID=cds1280;Name=YP_001532629.1;Parent=gene1304;Dbxref=Genbank:YP_001532629.1,GeneID:5711844;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532629.1;transl_table=11
NC_009952.1	RefSeq	gene	1339875	1340969	.	-	.	ID=gene1305;Name=Dshi_1287;Dbxref=GeneID:5711845;gbkey=Gene;locus_tag=Dshi_1287
NC_009952.1	RefSeq	CDS	1339875	1340969	.	-	0	ID=cds1281;Name=YP_001532630.1;Parent=gene1305;Dbxref=Genbank:YP_001532630.1,GeneID:5711845;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532630.1;transl_table=11
NC_009952.1	RefSeq	gene	1341315	1342481	.	+	.	ID=gene1306;Name=Dshi_1288;Dbxref=GeneID:5711846;gbkey=Gene;locus_tag=Dshi_1288
NC_009952.1	RefSeq	CDS	1341315	1342481	.	+	0	ID=cds1282;Name=YP_001532631.1;Parent=gene1306;Dbxref=Genbank:YP_001532631.1,GeneID:5711846;gbkey=CDS;product=amidohydrolase;protein_id=YP_001532631.1;transl_table=11
NC_009952.1	RefSeq	gene	1342529	1343269	.	+	.	ID=gene1307;Name=Dshi_1289;Dbxref=GeneID:5711847;gbkey=Gene;locus_tag=Dshi_1289
NC_009952.1	RefSeq	CDS	1342529	1343269	.	+	0	ID=cds1283;Name=YP_001532632.1;Parent=gene1307;Note=Catalyzes the transfer of the ammonia group from glutamine to a new carbon-nitrogen group;Dbxref=Genbank:YP_001532632.1,GeneID:5711847;gbkey=CDS;product=glutamine amidotransferase;protein_id=YP_001532632.1;transl_table=11
NC_009952.1	RefSeq	gene	1343361	1344371	.	-	.	ID=gene1308;Name=moaA;Dbxref=GeneID:5711848;gbkey=Gene;gene=moaA;locus_tag=Dshi_1290
NC_009952.1	RefSeq	CDS	1343361	1344371	.	-	0	ID=cds1284;Name=YP_001532633.1;Parent=gene1308;Note=together with moaC%2C is involved in the conversion of a guanosine derivative %28GXP%29 into molybdopterin precursor Z;Dbxref=Genbank:YP_001532633.1,GeneID:5711848;gbkey=CDS;gene=moaA;product=molybdenum cofactor biosynthesis protein A;protein_id=YP_001532633.1;transl_table=11
NC_009952.1	RefSeq	gene	1344604	1345305	.	-	.	ID=gene1309;Name=Dshi_1291;Dbxref=GeneID:5711849;gbkey=Gene;locus_tag=Dshi_1291
NC_009952.1	RefSeq	CDS	1344604	1345305	.	-	0	ID=cds1285;Name=YP_001532634.1;Parent=gene1309;Dbxref=Genbank:YP_001532634.1,GeneID:5711849;gbkey=CDS;product=DNA alkylation repair protein;protein_id=YP_001532634.1;transl_table=11
NC_009952.1	RefSeq	gene	1345302	1345850	.	-	.	ID=gene1310;Name=Dshi_1292;Dbxref=GeneID:5711850;gbkey=Gene;locus_tag=Dshi_1292
NC_009952.1	RefSeq	CDS	1345302	1345850	.	-	0	ID=cds1286;Name=YP_001532635.1;Parent=gene1310;Dbxref=Genbank:YP_001532635.1,GeneID:5711850;gbkey=CDS;product=pyridoxamine 5%27-phosphate oxidase-like FMN-binding protein;protein_id=YP_001532635.1;transl_table=11
NC_009952.1	RefSeq	gene	1345854	1347674	.	-	.	ID=gene1311;Name=glmS;Dbxref=GeneID:5711851;gbkey=Gene;gene=glmS;locus_tag=Dshi_1293
NC_009952.1	RefSeq	CDS	1345854	1347674	.	-	0	ID=cds1287;Name=YP_001532636.1;Parent=gene1311;Note=Catalyzes the first step in hexosamine metabolism%2C converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source;Dbxref=Genbank:YP_001532636.1,GeneID:5711851;gbkey=CDS;gene=glmS;product=glucosamine--fructose-6-phosphate aminotransferase;protein_id=YP_001532636.1;transl_table=11
NC_009952.1	RefSeq	gene	1347674	1349026	.	-	.	ID=gene1312;Name=glmU;Dbxref=GeneID:5711852;gbkey=Gene;gene=glmU;locus_tag=Dshi_1294
NC_009952.1	RefSeq	CDS	1347674	1349026	.	-	0	ID=cds1288;Name=YP_001532637.1;Parent=gene1312;Note=forms a homotrimer%3B catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc%3B function in cell wall synthesis;Dbxref=Genbank:YP_001532637.1,GeneID:5711852;gbkey=CDS;gene=glmU;product=bifunctional N-acetylglucosamine-1-phosphate uridyltransferase%2Fglucosamine-1-phosphate acetyltransferase;protein_id=YP_001532637.1;transl_table=11
NC_009952.1	RefSeq	gene	1349154	1349828	.	+	.	ID=gene1313;Name=Dshi_1295;Dbxref=GeneID:5711853;gbkey=Gene;locus_tag=Dshi_1295
NC_009952.1	RefSeq	CDS	1349154	1349828	.	+	0	ID=cds1289;Name=YP_001532638.1;Parent=gene1313;Note=Specifically catalyzes the dephosphorylation of 2-phosphoglycolate%3B subfamily IA%2C variant 3;Dbxref=Genbank:YP_001532638.1,GeneID:5711853;gbkey=CDS;product=HAD-superfamily hydrolase;protein_id=YP_001532638.1;transl_table=11
NC_009952.1	RefSeq	gene	1349879	1351090	.	+	.	ID=gene1314;Name=Dshi_1296;Dbxref=GeneID:5711854;gbkey=Gene;locus_tag=Dshi_1296
NC_009952.1	RefSeq	CDS	1349879	1351090	.	+	0	ID=cds1290;Name=YP_001532639.1;Parent=gene1314;Dbxref=Genbank:YP_001532639.1,GeneID:5711854;gbkey=CDS;product=DegT%2FDnrJ%2FEryC1%2FStrS aminotransferase;protein_id=YP_001532639.1;transl_table=11
NC_009952.1	RefSeq	gene	1351256	1352419	.	+	.	ID=gene1315;Name=ivd;Dbxref=GeneID:5711855;gbkey=Gene;gene=ivd;locus_tag=Dshi_1297
NC_009952.1	RefSeq	CDS	1351256	1352419	.	+	0	ID=cds1291;Name=YP_001532640.1;Parent=gene1315;Note=FAD-dependent%2C Reaction: 3-methylbutanoyl-CoA %2B acceptor %3D 3-methylbut-2-enoyl-CoA %2B reduced acceptor;Dbxref=Genbank:YP_001532640.1,GeneID:5711855;gbkey=CDS;gene=ivd;product=acyl-CoA dehydrogenase domain-containing protein;protein_id=YP_001532640.1;transl_table=11
NC_009952.1	RefSeq	gene	1352444	1352782	.	+	.	ID=gene1316;Name=Dshi_1298;Dbxref=GeneID:5711856;gbkey=Gene;locus_tag=Dshi_1298
NC_009952.1	RefSeq	CDS	1352444	1352782	.	+	0	ID=cds1292;Name=YP_001532641.1;Parent=gene1316;Dbxref=Genbank:YP_001532641.1,GeneID:5711856;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532641.1;transl_table=11
NC_009952.1	RefSeq	gene	1352857	1353465	.	-	.	ID=gene1317;Name=Dshi_1299;Dbxref=GeneID:5711857;gbkey=Gene;locus_tag=Dshi_1299
NC_009952.1	RefSeq	CDS	1352857	1353465	.	-	0	ID=cds1293;Name=YP_001532642.1;Parent=gene1317;Dbxref=Genbank:YP_001532642.1,GeneID:5711857;gbkey=CDS;product=OmpW family protein;protein_id=YP_001532642.1;transl_table=11
NC_009952.1	RefSeq	gene	1353609	1355213	.	+	.	ID=gene1318;Name=mccB;Dbxref=GeneID:5711858;gbkey=Gene;gene=mccB;locus_tag=Dshi_1300
NC_009952.1	RefSeq	CDS	1353609	1355213	.	+	0	ID=cds1294;Name=YP_001532643.1;Parent=gene1318;Note=involved in leucine catabolism;Dbxref=Genbank:YP_001532643.1,GeneID:5711858;gbkey=CDS;gene=mccB;product=propionyl-CoA carboxylase;protein_id=YP_001532643.1;transl_table=11
NC_009952.1	RefSeq	gene	1355325	1357310	.	+	.	ID=gene1319;Name=mccA;Dbxref=GeneID:5711859;gbkey=Gene;gene=mccA;locus_tag=Dshi_1301
NC_009952.1	RefSeq	CDS	1355325	1357310	.	+	0	ID=cds1295;Name=YP_001532644.1;Parent=gene1319;Note=involved in leucine catabolism;Dbxref=Genbank:YP_001532644.1,GeneID:5711859;gbkey=CDS;gene=mccA;product=carbamoyl-phosphate synthase L chain ATP-binding;protein_id=YP_001532644.1;transl_table=11
NC_009952.1	RefSeq	gene	1357307	1357975	.	+	.	ID=gene1320;Name=mccA;Dbxref=GeneID:5711860;gbkey=Gene;gene=mccA;locus_tag=Dshi_1302
NC_009952.1	RefSeq	CDS	1357307	1357975	.	+	0	ID=cds1296;Name=YP_001532645.1;Parent=gene1320;Dbxref=Genbank:YP_001532645.1,GeneID:5711860;gbkey=CDS;product=glutathione S-transferase domain-containing protein;protein_id=YP_001532645.1;transl_table=11
NC_009952.1	RefSeq	gene	1357972	1358835	.	+	.	ID=gene1321;Name=mvaB;Dbxref=GeneID:5711861;gbkey=Gene;gene=mvaB;locus_tag=Dshi_1303
NC_009952.1	RefSeq	CDS	1357972	1358835	.	+	0	ID=cds1297;Name=YP_001532646.1;Parent=gene1321;Note=catalyzes the formation of acetoacetate and acetyl-CoA from 3-hydroxy-3-methylglutaryl-CoA;Dbxref=Genbank:YP_001532646.1,GeneID:5711861;gbkey=CDS;gene=mvaB;product=hydroxymethylglutaryl-CoA lyase;protein_id=YP_001532646.1;transl_table=11
NC_009952.1	RefSeq	gene	1358832	1359620	.	+	.	ID=gene1322;Name=mvaA;Dbxref=GeneID:5711862;gbkey=Gene;gene=mvaA;locus_tag=Dshi_1304
NC_009952.1	RefSeq	CDS	1358832	1359620	.	+	0	ID=cds1298;Name=YP_001532647.1;Parent=gene1322;Note=Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA;Dbxref=Genbank:YP_001532647.1,GeneID:5711862;gbkey=CDS;gene=mvaA;product=enoyl-CoA hydratase;protein_id=YP_001532647.1;transl_table=11
NC_009952.1	RefSeq	gene	1359760	1359978	.	+	.	ID=gene1323;Name=Dshi_1305;Dbxref=GeneID:5711863;gbkey=Gene;locus_tag=Dshi_1305
NC_009952.1	RefSeq	CDS	1359760	1359978	.	+	0	ID=cds1299;Name=YP_001532648.1;Parent=gene1323;Dbxref=Genbank:YP_001532648.1,GeneID:5711863;gbkey=CDS;product=17 kDa surface antigen;protein_id=YP_001532648.1;transl_table=11
NC_009952.1	RefSeq	gene	1359980	1360588	.	-	.	ID=gene1324;Name=Dshi_1306;Dbxref=GeneID:5711864;gbkey=Gene;locus_tag=Dshi_1306
NC_009952.1	RefSeq	CDS	1359980	1360588	.	-	0	ID=cds1300;Name=YP_001532649.1;Parent=gene1324;Dbxref=Genbank:YP_001532649.1,GeneID:5711864;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532649.1;transl_table=11
NC_009952.1	RefSeq	gene	1360930	1361295	.	+	.	ID=gene1325;Name=nuoA;Dbxref=GeneID:5711865;gbkey=Gene;gene=nuoA;locus_tag=Dshi_1307
NC_009952.1	RefSeq	CDS	1360930	1361295	.	+	0	ID=cds1301;Name=YP_001532650.1;Parent=gene1325;Note=Catalyzes the transfer of electrons from NADH to quinone;Dbxref=Genbank:YP_001532650.1,GeneID:5711865;gbkey=CDS;gene=nuoA;product=NADH dehydrogenase subunit A;protein_id=YP_001532650.1;transl_table=11
NC_009952.1	RefSeq	gene	1361286	1361819	.	+	.	ID=gene1326;Name=nuoB;Dbxref=GeneID:5711866;gbkey=Gene;gene=nuoB;locus_tag=Dshi_1308
NC_009952.1	RefSeq	CDS	1361286	1361819	.	+	0	ID=cds1302;Name=YP_001532651.1;Parent=gene1326;Note=The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen;Dbxref=Genbank:YP_001532651.1,GeneID:5711866;gbkey=CDS;gene=nuoB;product=NADH dehydrogenase subunit B;protein_id=YP_001532651.1;transl_table=11
NC_009952.1	RefSeq	gene	1361883	1362530	.	+	.	ID=gene1327;Name=nuoC;Dbxref=GeneID:5711867;gbkey=Gene;gene=nuoC;locus_tag=Dshi_1309
NC_009952.1	RefSeq	CDS	1361883	1362530	.	+	0	ID=cds1303;Name=YP_001532652.1;Parent=gene1327;Note=Catalyzes the transfer of electrons from NADH to quinone;Dbxref=Genbank:YP_001532652.1,GeneID:5711867;gbkey=CDS;gene=nuoC;product=NADH dehydrogenase subunit C;protein_id=YP_001532652.1;transl_table=11
NC_009952.1	RefSeq	gene	1362535	1363413	.	+	.	ID=gene1328;Name=Dshi_1310;Dbxref=GeneID:5711868;gbkey=Gene;locus_tag=Dshi_1310
NC_009952.1	RefSeq	CDS	1362535	1363413	.	+	0	ID=cds1304;Name=YP_001532653.1;Parent=gene1328;Dbxref=Genbank:YP_001532653.1,GeneID:5711868;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532653.1;transl_table=11
NC_009952.1	RefSeq	gene	1363417	1364631	.	+	.	ID=gene1329;Name=nuoD;Dbxref=GeneID:5711869;gbkey=Gene;gene=nuoD;locus_tag=Dshi_1311
NC_009952.1	RefSeq	CDS	1363417	1364631	.	+	0	ID=cds1305;Name=YP_001532654.1;Parent=gene1329;Note=Catalyzes the transfer of electrons from NADH to quinone;Dbxref=Genbank:YP_001532654.1,GeneID:5711869;gbkey=CDS;gene=nuoD;product=NADH dehydrogenase subunit D;protein_id=YP_001532654.1;transl_table=11
NC_009952.1	RefSeq	gene	1364628	1364816	.	+	.	ID=gene1330;Name=nuoD;Dbxref=GeneID:5711870;gbkey=Gene;gene=nuoD;locus_tag=Dshi_1312
NC_009952.1	RefSeq	CDS	1364628	1364816	.	+	0	ID=cds1306;Name=YP_001532655.1;Parent=gene1330;Dbxref=Genbank:YP_001532655.1,GeneID:5711870;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532655.1;transl_table=11
NC_009952.1	RefSeq	gene	1365222	1366430	.	+	.	ID=gene1331;Name=nuoE;Dbxref=GeneID:5711871;gbkey=Gene;gene=nuoE;locus_tag=Dshi_1313
NC_009952.1	RefSeq	CDS	1365222	1366430	.	+	0	ID=cds1307;Name=YP_001532656.1;Parent=gene1331;Note=catalyzes the transfer of electrons from NADH to ubiquinone;Dbxref=Genbank:YP_001532656.1,GeneID:5711871;gbkey=CDS;gene=nuoE;product=NADH dehydrogenase subunit E;protein_id=YP_001532656.1;transl_table=11
NC_009952.1	RefSeq	gene	1366460	1367179	.	+	.	ID=gene1332;Name=Dshi_1314;Dbxref=GeneID:5711872;gbkey=Gene;locus_tag=Dshi_1314
NC_009952.1	RefSeq	CDS	1366460	1367179	.	+	0	ID=cds1308;Name=YP_001532657.1;Parent=gene1332;Dbxref=Genbank:YP_001532657.1,GeneID:5711872;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532657.1;transl_table=11
NC_009952.1	RefSeq	gene	1367176	1367412	.	+	.	ID=gene1333;Name=Dshi_1315;Dbxref=GeneID:5711873;gbkey=Gene;locus_tag=Dshi_1315
NC_009952.1	RefSeq	CDS	1367176	1367412	.	+	0	ID=cds1309;Name=YP_001532658.1;Parent=gene1333;Note=conserved in Rhodobacteraceae;Dbxref=Genbank:YP_001532658.1,GeneID:5711873;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532658.1;transl_table=11
NC_009952.1	RefSeq	gene	1367416	1368717	.	+	.	ID=gene1334;Name=nuoF;Dbxref=GeneID:5711874;gbkey=Gene;gene=nuoF;locus_tag=Dshi_1316
NC_009952.1	RefSeq	CDS	1367416	1368717	.	+	0	ID=cds1310;Name=YP_001532659.1;Parent=gene1334;Note=part of NADH-ubiquinone oxidoreductase complex I%3B shuttles electrons from NADH%2C via FMN and iron-sulfur %28Fe-S%29 centers%2C to quinones in the respiratory chain%3B NuoF is part of the soluble NADH dehydrogenase fragment%2C which represents the electron input part of NADH dehydrogenase;Dbxref=Genbank:YP_001532659.1,GeneID:5711874;gbkey=CDS;gene=nuoF;product=NADH dehydrogenase subunit I F;protein_id=YP_001532659.1;transl_table=11
NC_009952.1	RefSeq	gene	1368714	1369106	.	+	.	ID=gene1335;Name=nuoF;Dbxref=GeneID:5711875;gbkey=Gene;gene=nuoF;locus_tag=Dshi_1317
NC_009952.1	RefSeq	CDS	1368714	1369106	.	+	0	ID=cds1311;Name=YP_001532660.1;Parent=gene1335;Dbxref=Genbank:YP_001532660.1,GeneID:5711875;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532660.1;transl_table=11
NC_009952.1	RefSeq	gene	1369103	1369564	.	+	.	ID=gene1336;Name=Dshi_1318;Dbxref=GeneID:5711876;gbkey=Gene;locus_tag=Dshi_1318
NC_009952.1	RefSeq	CDS	1369103	1369564	.	+	0	ID=cds1312;Name=YP_001532661.1;Parent=gene1336;Dbxref=Genbank:YP_001532661.1,GeneID:5711876;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532661.1;transl_table=11
NC_009952.1	RefSeq	gene	1369561	1370079	.	+	.	ID=gene1337;Name=Dshi_1319;Dbxref=GeneID:5711877;gbkey=Gene;locus_tag=Dshi_1319
NC_009952.1	RefSeq	CDS	1369561	1370079	.	+	0	ID=cds1313;Name=YP_001532662.1;Parent=gene1337;Dbxref=Genbank:YP_001532662.1,GeneID:5711877;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532662.1;transl_table=11
NC_009952.1	RefSeq	gene	1370083	1372101	.	+	.	ID=gene1338;Name=nuoG;Dbxref=GeneID:5711878;gbkey=Gene;gene=nuoG;locus_tag=Dshi_1320
NC_009952.1	RefSeq	CDS	1370083	1372101	.	+	0	ID=cds1314;Name=YP_001532663.1;Parent=gene1338;Note=Catalyzes the transfer of electrons from NADH to quinone;Dbxref=Genbank:YP_001532663.1,GeneID:5711878;gbkey=CDS;gene=nuoG;product=NADH dehydrogenase subunit G;protein_id=YP_001532663.1;transl_table=11
NC_009952.1	RefSeq	gene	1372375	1373412	.	+	.	ID=gene1339;Name=nuoH;Dbxref=GeneID:5711879;gbkey=Gene;gene=nuoH;locus_tag=Dshi_1321
NC_009952.1	RefSeq	CDS	1372375	1373412	.	+	0	ID=cds1315;Name=YP_001532664.1;Parent=gene1339;Note=Catalyzes the transfer of electrons from NADH to quinone;Dbxref=Genbank:YP_001532664.1,GeneID:5711879;gbkey=CDS;gene=nuoH;product=NADH dehydrogenase subunit H;protein_id=YP_001532664.1;transl_table=11
NC_009952.1	RefSeq	gene	1373416	1373910	.	+	.	ID=gene1340;Name=nuoI;Dbxref=GeneID:5711880;gbkey=Gene;gene=nuoI;locus_tag=Dshi_1322
NC_009952.1	RefSeq	CDS	1373416	1373910	.	+	0	ID=cds1316;Name=YP_001532665.1;Parent=gene1340;Note=Catalyzes the transfer of electrons from NADH to quinone;Dbxref=Genbank:YP_001532665.1,GeneID:5711880;gbkey=CDS;gene=nuoI;product=NADH dehydrogenase subunit I;protein_id=YP_001532665.1;transl_table=11
NC_009952.1	RefSeq	gene	1373907	1374320	.	+	.	ID=gene1341;Name=nuoI;Dbxref=GeneID:5711881;gbkey=Gene;gene=nuoI;locus_tag=Dshi_1323
NC_009952.1	RefSeq	CDS	1373907	1374320	.	+	0	ID=cds1317;Name=YP_001532666.1;Parent=gene1341;Dbxref=Genbank:YP_001532666.1,GeneID:5711881;gbkey=CDS;product=carboxymuconolactone decarboxylase;protein_id=YP_001532666.1;transl_table=11
NC_009952.1	RefSeq	gene	1374343	1374957	.	+	.	ID=gene1342;Name=nuoJ;Dbxref=GeneID:5711882;gbkey=Gene;gene=nuoJ;locus_tag=Dshi_1324
NC_009952.1	RefSeq	CDS	1374343	1374957	.	+	0	ID=cds1318;Name=YP_001532667.1;Parent=gene1342;Note=Catalyzes the transfer of electrons from NADH to quinone;Dbxref=Genbank:YP_001532667.1,GeneID:5711882;gbkey=CDS;gene=nuoJ;product=NADH dehydrogenase subunit J;protein_id=YP_001532667.1;transl_table=11
NC_009952.1	RefSeq	gene	1375139	1375633	.	+	.	ID=gene1343;Name=Dshi_1325;Dbxref=GeneID:5711883;gbkey=Gene;locus_tag=Dshi_1325
NC_009952.1	RefSeq	CDS	1375139	1375633	.	+	0	ID=cds1319;Name=YP_001532668.1;Parent=gene1343;Dbxref=Genbank:YP_001532668.1,GeneID:5711883;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532668.1;transl_table=11
NC_009952.1	RefSeq	gene	1375716	1376021	.	+	.	ID=gene1344;Name=nuoK;Dbxref=GeneID:5711884;gbkey=Gene;gene=nuoK;locus_tag=Dshi_1326
NC_009952.1	RefSeq	CDS	1375716	1376021	.	+	0	ID=cds1320;Name=YP_001532669.1;Parent=gene1344;Note=Catalyzes the transfer of electrons from NADH to quinone;Dbxref=Genbank:YP_001532669.1,GeneID:5711884;gbkey=CDS;gene=nuoK;product=NADH dehydrogenase subunit K;protein_id=YP_001532669.1;transl_table=11
NC_009952.1	RefSeq	gene	1376026	1378083	.	+	.	ID=gene1345;Name=nuoL;Dbxref=GeneID:5711885;gbkey=Gene;gene=nuoL;locus_tag=Dshi_1327
NC_009952.1	RefSeq	CDS	1376026	1378083	.	+	0	ID=cds1321;Name=YP_001532670.1;Parent=gene1345;Note=Catalyzes the transfer of electrons from NADH to ubiquinone;Dbxref=Genbank:YP_001532670.1,GeneID:5711885;gbkey=CDS;gene=nuoL;product=NADH dehydrogenase subunit L;protein_id=YP_001532670.1;transl_table=11
NC_009952.1	RefSeq	gene	1378083	1379630	.	+	.	ID=gene1346;Name=nuoM;Dbxref=GeneID:5711886;gbkey=Gene;gene=nuoM;locus_tag=Dshi_1328
NC_009952.1	RefSeq	CDS	1378083	1379630	.	+	0	ID=cds1322;Name=YP_001532671.1;Parent=gene1346;Note=Catalyzes the transfer of electrons from NADH to quinone;Dbxref=Genbank:YP_001532671.1,GeneID:5711886;gbkey=CDS;gene=nuoM;product=NADH dehydrogenase subunit M;protein_id=YP_001532671.1;transl_table=11
NC_009952.1	RefSeq	gene	1379641	1381080	.	+	.	ID=gene1347;Name=nuoN;Dbxref=GeneID:5711887;gbkey=Gene;gene=nuoN;locus_tag=Dshi_1329
NC_009952.1	RefSeq	CDS	1379641	1381080	.	+	0	ID=cds1323;Name=YP_001532672.1;Parent=gene1347;Note=Catalyzes the transfer of electrons from NADH to quinone;Dbxref=Genbank:YP_001532672.1,GeneID:5711887;gbkey=CDS;gene=nuoN;product=NADH dehydrogenase subunit N;protein_id=YP_001532672.1;transl_table=11
NC_009952.1	RefSeq	gene	1381070	1381825	.	+	.	ID=gene1348;Name=nuoN;Dbxref=GeneID:5711888;gbkey=Gene;gene=nuoN;locus_tag=Dshi_1330
NC_009952.1	RefSeq	CDS	1381070	1381825	.	+	0	ID=cds1324;Name=YP_001532673.1;Parent=gene1348;Dbxref=Genbank:YP_001532673.1,GeneID:5711888;gbkey=CDS;product=biotin--acetyl-CoA-carboxylase ligase;protein_id=YP_001532673.1;transl_table=11
NC_009952.1	RefSeq	gene	1381846	1382616	.	+	.	ID=gene1349;Name=Dshi_1331;Dbxref=GeneID:5711889;gbkey=Gene;locus_tag=Dshi_1331
NC_009952.1	RefSeq	CDS	1381846	1382616	.	+	0	ID=cds1325;Name=YP_001532674.1;Parent=gene1349;Note=type III%3B catalyzes the formation of %28R%29-4%27-phosphopantothenate from %28R%29-pantothenate in coenzyme A biosynthesis%3B type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP;Dbxref=Genbank:YP_001532674.1,GeneID:5711889;gbkey=CDS;product=pantothenate kinase;protein_id=YP_001532674.1;transl_table=11
NC_009952.1	RefSeq	gene	1382616	1384286	.	+	.	ID=gene1350;Name=Dshi_1332;Dbxref=GeneID:5711890;gbkey=Gene;locus_tag=Dshi_1332
NC_009952.1	RefSeq	CDS	1382616	1384286	.	+	0	ID=cds1326;Name=YP_001532675.1;Parent=gene1350;Dbxref=Genbank:YP_001532675.1,GeneID:5711890;gbkey=CDS;product=beta-lactamase domain-containing protein;protein_id=YP_001532675.1;transl_table=11
NC_009952.1	RefSeq	gene	1384375	1385856	.	-	.	ID=gene1351;Name=rhlE;Dbxref=GeneID:5711891;gbkey=Gene;gene=rhlE;locus_tag=Dshi_1333
NC_009952.1	RefSeq	CDS	1384375	1385856	.	-	0	ID=cds1327;Name=YP_001532676.1;Parent=gene1351;Dbxref=Genbank:YP_001532676.1,GeneID:5711891;gbkey=CDS;gene=rhlE;product=DEAD%2FDEAH box helicase;protein_id=YP_001532676.1;transl_table=11
NC_009952.1	RefSeq	gene	1386187	1387725	.	-	.	ID=gene1352;Name=Dshi_1334;Dbxref=GeneID:5711892;gbkey=Gene;locus_tag=Dshi_1334
NC_009952.1	RefSeq	CDS	1386187	1387725	.	-	0	ID=cds1328;Name=YP_001532677.1;Parent=gene1352;Note=TPR containing proteins are involved in assambly of multiprotein complexes;Dbxref=Genbank:YP_001532677.1,GeneID:5711892;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532677.1;transl_table=11
NC_009952.1	RefSeq	gene	1388539	1389207	.	+	.	ID=gene1353;Name=Dshi_1335;Dbxref=GeneID:5711893;gbkey=Gene;locus_tag=Dshi_1335
NC_009952.1	RefSeq	CDS	1388539	1389207	.	+	0	ID=cds1329;Name=YP_001532678.2;Parent=gene1353;Dbxref=Genbank:YP_001532678.2,GeneID:5711893;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532678.2;transl_table=11
NC_009952.1	RefSeq	gene	1389301	1390908	.	-	.	ID=gene1354;Name=prfC;Dbxref=GeneID:5711894;gbkey=Gene;gene=prfC;locus_tag=Dshi_1336
NC_009952.1	RefSeq	CDS	1389301	1390908	.	-	0	ID=cds1330;Name=YP_001532679.1;Parent=gene1354;Note=Increases the formation of ribosomal termination complexes and stimulates activities of prfA and prfB%2C GTP binding;Dbxref=Genbank:YP_001532679.1,GeneID:5711894;gbkey=CDS;gene=prfC;product=peptide chain release factor 3;protein_id=YP_001532679.1;transl_table=11
NC_009952.1	RefSeq	gene	1391022	1391393	.	+	.	ID=gene1355;Name=Dshi_1337;Dbxref=GeneID:5711895;gbkey=Gene;locus_tag=Dshi_1337
NC_009952.1	RefSeq	CDS	1391022	1391393	.	+	0	ID=cds1331;Name=YP_001532680.1;Parent=gene1355;Dbxref=Genbank:YP_001532680.1,GeneID:5711895;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532680.1;transl_table=11
NC_009952.1	RefSeq	gene	1391461	1392303	.	-	.	ID=gene1356;Name=uspA1;Dbxref=GeneID:5711896;gbkey=Gene;gene=uspA1;locus_tag=Dshi_1338
NC_009952.1	RefSeq	CDS	1391461	1392303	.	-	0	ID=cds1332;Name=YP_001532681.1;Parent=gene1356;Note=contains 2 UspA domains%2C expression is enhanced when the cell is exposed to stress agents%2C enhances the rate of cell survival during prolonged exposure to such conditions;Dbxref=Genbank:YP_001532681.1,GeneID:5711896;gbkey=CDS;gene=uspA1;product=UspA domain-containing protein;protein_id=YP_001532681.1;transl_table=11
NC_009952.1	RefSeq	gene	1392438	1393217	.	+	.	ID=gene1357;Name=Dshi_1339;Dbxref=GeneID:5711897;gbkey=Gene;locus_tag=Dshi_1339
NC_009952.1	RefSeq	CDS	1392438	1393217	.	+	0	ID=cds1333;Name=YP_001532682.1;Parent=gene1357;Note=most enzymes of this family are NAD%2FNADP-dependent oxidoreductases;Dbxref=Genbank:YP_001532682.1,GeneID:5711897;gbkey=CDS;product=short-chain dehydrogenase%2Freductase SDR;protein_id=YP_001532682.1;transl_table=11
NC_009952.1	RefSeq	gene	1393332	1394720	.	+	.	ID=gene1358;Name=Dshi_1340;Dbxref=GeneID:5711898;gbkey=Gene;locus_tag=Dshi_1340
NC_009952.1	RefSeq	CDS	1393332	1394720	.	+	0	ID=cds1334;Name=YP_001532683.1;Parent=gene1358;Note=the energy stored in an inwardly directed electrochemical sodium gradient %28sodium motive force%2C SMF%29 is used to drive solute accumulation against a concentration gradient;Dbxref=Genbank:YP_001532683.1,GeneID:5711898;gbkey=CDS;product=Na%2B%2Fsolute symporter;protein_id=YP_001532683.1;transl_table=11
NC_009952.1	RefSeq	gene	1394766	1395854	.	+	.	ID=gene1359;Name=Dshi_1341;Dbxref=GeneID:5711899;gbkey=Gene;locus_tag=Dshi_1341
NC_009952.1	RefSeq	CDS	1394766	1395854	.	+	0	ID=cds1335;Name=YP_001532684.1;Parent=gene1359;Note=unknown specificity%2C high similarity to iron ABC transporters;Dbxref=Genbank:YP_001532684.1,GeneID:5711899;gbkey=CDS;product=ABC transporter-like protein;protein_id=YP_001532684.1;transl_table=11
NC_009952.1	RefSeq	gene	1395858	1396517	.	-	.	ID=gene1360;Name=Dshi_1342;Dbxref=GeneID:5711900;gbkey=Gene;locus_tag=Dshi_1342
NC_009952.1	RefSeq	CDS	1395858	1396517	.	-	0	ID=cds1336;Name=YP_001532685.1;Parent=gene1360;Note=Helix-turn-helix type 11 domain protein;Dbxref=Genbank:YP_001532685.1,GeneID:5711900;gbkey=CDS;product=helix-turn-helix domain-containing protein;protein_id=YP_001532685.1;transl_table=11
NC_009952.1	RefSeq	gene	1396711	1396935	.	+	.	ID=gene1361;Name=Dshi_1343;Dbxref=GeneID:5711901;gbkey=Gene;locus_tag=Dshi_1343
NC_009952.1	RefSeq	CDS	1396711	1396935	.	+	0	ID=cds1337;Name=YP_001532686.1;Parent=gene1361;Note=Sec-independent translocation protein mttA%2FHcf106%2C Members of this protein family are involved in a sec independent translocation mechanism. This sec-independent pathway is termed TAT for twin-arginine translocation system. This system mainly transports proteins with bound cofactors that require folding prior to export.;Dbxref=Genbank:YP_001532686.1,GeneID:5711901;gbkey=CDS;product=Sec-independent translocation protein mttA%2FHcf106;protein_id=YP_001532686.1;transl_table=11
NC_009952.1	RefSeq	gene	1396954	1397421	.	+	.	ID=gene1362;Name=tatB;Dbxref=GeneID:5711902;gbkey=Gene;gene=tatB;locus_tag=Dshi_1344
NC_009952.1	RefSeq	CDS	1396954	1397421	.	+	0	ID=cds1338;Name=YP_001532687.1;Parent=gene1362;Note=Sec-independent protein secretion pathway components%3B TatB subunit;Dbxref=Genbank:YP_001532687.1,GeneID:5711902;gbkey=CDS;gene=tatB;product=twin-arginine translocation protein;protein_id=YP_001532687.1;transl_table=11
NC_009952.1	RefSeq	gene	1397430	1398470	.	+	.	ID=gene1363;Name=tatC;Dbxref=GeneID:5711911;gbkey=Gene;gene=tatC;locus_tag=Dshi_1345
NC_009952.1	RefSeq	CDS	1397430	1398470	.	+	0	ID=cds1339;Name=YP_001532688.1;Parent=gene1363;Note=Sec-independent protein secretion pathway components%3B TatC subunit;Dbxref=Genbank:YP_001532688.1,GeneID:5711911;gbkey=CDS;gene=tatC;product=sec-independent protein translocase;protein_id=YP_001532688.1;transl_table=11
NC_009952.1	RefSeq	gene	1398467	1399318	.	+	.	ID=gene1364;Name=tatC;Dbxref=GeneID:5711912;gbkey=Gene;gene=tatC;locus_tag=Dshi_1346
NC_009952.1	RefSeq	CDS	1398467	1399318	.	+	0	ID=cds1340;Name=YP_001532689.1;Parent=gene1364;Dbxref=Genbank:YP_001532689.1,GeneID:5711912;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532689.1;transl_table=11
NC_009952.1	RefSeq	gene	1399416	1400000	.	-	.	ID=gene1365;Name=Dshi_1347;Dbxref=GeneID:5711913;gbkey=Gene;locus_tag=Dshi_1347
NC_009952.1	RefSeq	CDS	1399416	1400000	.	-	0	ID=cds1341;Name=YP_001532690.1;Parent=gene1365;Dbxref=Genbank:YP_001532690.1,GeneID:5711913;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532690.1;transl_table=11
NC_009952.1	RefSeq	gene	1400045	1400671	.	-	.	ID=gene1366;Name=Dshi_1348;Dbxref=GeneID:5711914;gbkey=Gene;locus_tag=Dshi_1348
NC_009952.1	RefSeq	CDS	1400045	1400671	.	-	0	ID=cds1342;Name=YP_001532691.1;Parent=gene1366;Note=Integral membrane protein family that includes the antibiotic resistance protein MarC. These proteins may be transporters.;Dbxref=Genbank:YP_001532691.1,GeneID:5711914;gbkey=CDS;product=multiple antibiotic resistance %28MarC%29-like protein;protein_id=YP_001532691.1;transl_table=11
NC_009952.1	RefSeq	gene	1400718	1402574	.	-	.	ID=gene1367;Name=Dshi_1349;Dbxref=GeneID:5711915;gbkey=Gene;locus_tag=Dshi_1349
NC_009952.1	RefSeq	CDS	1400718	1402574	.	-	0	ID=cds1343;Name=YP_001532692.1;Parent=gene1367;Note=duplicated ATPase domain;Dbxref=Genbank:YP_001532692.1,GeneID:5711915;gbkey=CDS;product=ABC transporter-like protein;protein_id=YP_001532692.1;transl_table=11
NC_009952.1	RefSeq	gene	1402713	1403135	.	+	.	ID=gene1368;Name=ndk;Dbxref=GeneID:5711916;gbkey=Gene;gene=ndk;locus_tag=Dshi_1350
NC_009952.1	RefSeq	CDS	1402713	1403135	.	+	0	ID=cds1344;Name=YP_001532693.1;Parent=gene1368;Note=catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate;Dbxref=Genbank:YP_001532693.1,GeneID:5711916;gbkey=CDS;gene=ndk;product=nucleoside diphosphate kinase;protein_id=YP_001532693.1;transl_table=11
NC_009952.1	RefSeq	gene	1403285	1403677	.	+	.	ID=gene1369;Name=Dshi_1351;Dbxref=GeneID:5711917;gbkey=Gene;locus_tag=Dshi_1351
NC_009952.1	RefSeq	CDS	1403285	1403677	.	+	0	ID=cds1345;Name=YP_001532694.1;Parent=gene1369;Dbxref=Genbank:YP_001532694.1,GeneID:5711917;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532694.1;transl_table=11
NC_009952.1	RefSeq	gene	1403674	1404003	.	-	.	ID=gene1370;Name=Dshi_1352;Dbxref=GeneID:5711903;gbkey=Gene;locus_tag=Dshi_1352
NC_009952.1	RefSeq	CDS	1403674	1404003	.	-	0	ID=cds1346;Name=YP_001532695.1;Parent=gene1370;Note=no evidence for predicted domain;Dbxref=Genbank:YP_001532695.1,GeneID:5711903;gbkey=CDS;product=TfoX domain-containing protein;protein_id=YP_001532695.1;transl_table=11
NC_009952.1	RefSeq	gene	1404655	1405959	.	+	.	ID=gene1371;Name=Dshi_1353;Dbxref=GeneID:5711904;gbkey=Gene;locus_tag=Dshi_1353
NC_009952.1	RefSeq	CDS	1404655	1405959	.	+	0	ID=cds1347;Name=YP_001532696.1;Parent=gene1371;Note=ABC transporter %28importer%29 gene cluster: receptor;Dbxref=Genbank:YP_001532696.1,GeneID:5711904;gbkey=CDS;product=family 1 extracellular solute-binding protein;protein_id=YP_001532696.1;transl_table=11
NC_009952.1	RefSeq	gene	1406021	1407271	.	+	.	ID=gene1372;Name=Dshi_1354;Dbxref=GeneID:5711905;gbkey=Gene;locus_tag=Dshi_1354
NC_009952.1	RefSeq	CDS	1406021	1407271	.	+	0	ID=cds1348;Name=YP_001532697.1;Parent=gene1372;Note=ABC transporter %28importer%29 gene cluster: 1st membrane spanning domain %28MSD%29%3B part of a heterotetramer;Dbxref=Genbank:YP_001532697.1,GeneID:5711905;gbkey=CDS;product=binding-protein-dependent transport system inner membrane protein;protein_id=YP_001532697.1;transl_table=11
NC_009952.1	RefSeq	gene	1407459	1408673	.	+	.	ID=gene1373;Name=Dshi_1355;Dbxref=GeneID:5711906;gbkey=Gene;locus_tag=Dshi_1355
NC_009952.1	RefSeq	CDS	1407459	1408673	.	+	0	ID=cds1349;Name=YP_001532698.1;Parent=gene1373;Note=ABC transporter %28importer%29 gene cluster: 2nd membrane spanning domain %28MSD%29%3B part of a heterotetramer;Dbxref=Genbank:YP_001532698.1,GeneID:5711906;gbkey=CDS;product=binding-protein-dependent transport system inner membrane protein;protein_id=YP_001532698.1;transl_table=11
NC_009952.1	RefSeq	gene	1408670	1409944	.	+	.	ID=gene1374;Name=Dshi_1356;Dbxref=GeneID:5711907;gbkey=Gene;locus_tag=Dshi_1356
NC_009952.1	RefSeq	CDS	1408670	1409944	.	+	0	ID=cds1350;Name=YP_001532699.1;Parent=gene1374;Dbxref=Genbank:YP_001532699.1,GeneID:5711907;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532699.1;transl_table=11
NC_009952.1	RefSeq	gene	1409932	1410981	.	+	.	ID=gene1375;Name=Dshi_1357;Dbxref=GeneID:5711908;gbkey=Gene;locus_tag=Dshi_1357
NC_009952.1	RefSeq	CDS	1409932	1410981	.	+	0	ID=cds1351;Name=YP_001532700.1;Parent=gene1375;Note=ABC transporter %28importer%29 gene cluster: ATP binding cassette %28ABC%29 domain%3B part of a heterotetramer;Dbxref=Genbank:YP_001532700.1,GeneID:5711908;gbkey=CDS;product=ABC transporter-like protein;protein_id=YP_001532700.1;transl_table=11
NC_009952.1	RefSeq	gene	1410984	1411760	.	+	.	ID=gene1376;Name=Dshi_1358;Dbxref=GeneID:5711909;gbkey=Gene;locus_tag=Dshi_1358
NC_009952.1	RefSeq	CDS	1410984	1411760	.	+	0	ID=cds1352;Name=YP_001532701.1;Parent=gene1376;Note=most enzymes of this family are NAD%2FNADP-dependent oxidoreductases;Dbxref=Genbank:YP_001532701.1,GeneID:5711909;gbkey=CDS;product=short-chain dehydrogenase%2Freductase SDR;protein_id=YP_001532701.1;transl_table=11
NC_009952.1	RefSeq	gene	1411909	1412286	.	+	.	ID=gene1377;Name=Dshi_1359;Dbxref=GeneID:5711910;gbkey=Gene;locus_tag=Dshi_1359
NC_009952.1	RefSeq	CDS	1411909	1412286	.	+	0	ID=cds1353;Name=YP_001532702.1;Parent=gene1377;Dbxref=Genbank:YP_001532702.1,GeneID:5711910;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532702.1;transl_table=11
NC_009952.1	RefSeq	gene	1412275	1413312	.	-	.	ID=gene1378;Name=Dshi_1360;Dbxref=GeneID:5712536;gbkey=Gene;locus_tag=Dshi_1360
NC_009952.1	RefSeq	CDS	1412275	1413312	.	-	0	ID=cds1354;Name=YP_001532703.1;Parent=gene1378;Note=SnoaL-like polyketide cyclase family protein;Dbxref=Genbank:YP_001532703.1,GeneID:5712536;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532703.1;transl_table=11
NC_009952.1	RefSeq	gene	1413419	1414825	.	+	.	ID=gene1379;Name=dld1;Dbxref=GeneID:5712537;gbkey=Gene;gene=dld1;locus_tag=Dshi_1361
NC_009952.1	RefSeq	CDS	1413419	1414825	.	+	0	ID=cds1355;Name=YP_001532704.1;Parent=gene1379;Note=Catalyzes the stereospecific oxidation of D-lactate to pyruvate%3B cytochrome;Dbxref=Genbank:YP_001532704.1,GeneID:5712537;gbkey=CDS;gene=dld1;product=D-lactate dehydrogenase;protein_id=YP_001532704.1;transl_table=11
NC_009952.1	RefSeq	gene	1414985	1416322	.	+	.	ID=gene1380;Name=Dshi_1362;Dbxref=GeneID:5712538;gbkey=Gene;locus_tag=Dshi_1362
NC_009952.1	RefSeq	CDS	1414985	1416322	.	+	0	ID=cds1356;Name=YP_001532705.1;Parent=gene1380;Note=function undetermined%3B similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain;Dbxref=Genbank:YP_001532705.1,GeneID:5712538;gbkey=CDS;product=putative oxidoreductase;protein_id=YP_001532705.1;transl_table=11
NC_009952.1	RefSeq	gene	1416350	1417648	.	+	.	ID=gene1381;Name=pyrD1;Dbxref=GeneID:5712539;gbkey=Gene;gene=pyrD1;locus_tag=Dshi_1363
NC_009952.1	RefSeq	CDS	1416350	1417648	.	+	0	ID=cds1357;Name=YP_001532706.1;Parent=gene1381;Note=catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5%2C6-dihydropyrimidines;Dbxref=Genbank:YP_001532706.1,GeneID:5712539;gbkey=CDS;gene=pyrD1;product=dihydropyrimidine dehydrogenase;protein_id=YP_001532706.1;transl_table=11
NC_009952.1	RefSeq	gene	1417662	1418054	.	-	.	ID=gene1382;Name=Dshi_1364;Dbxref=GeneID:5712540;gbkey=Gene;locus_tag=Dshi_1364
NC_009952.1	RefSeq	CDS	1417662	1418054	.	-	0	ID=cds1358;Name=YP_001532707.1;Parent=gene1382;Dbxref=Genbank:YP_001532707.1,GeneID:5712540;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532707.1;transl_table=11
NC_009952.1	RefSeq	gene	1418132	1418767	.	-	.	ID=gene1383;Name=Dshi_1365;Dbxref=GeneID:5712541;gbkey=Gene;locus_tag=Dshi_1365
NC_009952.1	RefSeq	CDS	1418132	1418767	.	-	0	ID=cds1359;Name=YP_001532708.1;Parent=gene1383;Note=Helix-Turn-Helix motif%3B TetR family;Dbxref=Genbank:YP_001532708.1,GeneID:5712541;gbkey=CDS;product=transcriptional regulator;protein_id=YP_001532708.1;transl_table=11
NC_009952.1	RefSeq	gene	1418987	1420312	.	+	.	ID=gene1384;Name=Dshi_1366;Dbxref=GeneID:5712542;gbkey=Gene;locus_tag=Dshi_1366
NC_009952.1	RefSeq	CDS	1418987	1420312	.	+	0	ID=cds1360;Name=YP_001532709.1;Parent=gene1384;Note=catalyzes the formation of pyruvate and beta-alanine from L-alanine and 3-oxopropanoate;Dbxref=Genbank:YP_001532709.1,GeneID:5712542;gbkey=CDS;product=beta alanine--pyruvate transaminase;protein_id=YP_001532709.1;transl_table=11
NC_009952.1	RefSeq	gene	1420347	1421621	.	+	.	ID=gene1385;Name=amaB;Dbxref=GeneID:5712543;gbkey=Gene;gene=amaB;locus_tag=Dshi_1367
NC_009952.1	RefSeq	CDS	1420347	1421621	.	+	0	ID=cds1361;Name=YP_001532710.1;Parent=gene1385;Note=allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar%3B the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to %28S%29-ureidoglycolate and ammonia%3B carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids%2C ammonia%2C and carbon dioxide;Dbxref=Genbank:YP_001532710.1,GeneID:5712543;gbkey=CDS;gene=amaB;product=allantoate amidohydrolase;protein_id=YP_001532710.1;transl_table=11
NC_009952.1	RefSeq	gene	1421652	1421951	.	+	.	ID=gene1386;Name=Dshi_1368;Dbxref=GeneID:5712544;gbkey=Gene;locus_tag=Dshi_1368
NC_009952.1	RefSeq	CDS	1421652	1421951	.	+	0	ID=cds1362;Name=YP_001532711.1;Parent=gene1386;Dbxref=Genbank:YP_001532711.1,GeneID:5712544;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532711.1;transl_table=11
NC_009952.1	RefSeq	gene	1421968	1422711	.	+	.	ID=gene1387;Name=Dshi_1369;Dbxref=GeneID:5712545;gbkey=Gene;locus_tag=Dshi_1369
NC_009952.1	RefSeq	CDS	1421968	1422711	.	+	0	ID=cds1363;Name=YP_001532712.1;Parent=gene1387;Note=This family includes class II aldolases and adducins which have not been ascribed any enzymatic function.;Dbxref=Genbank:YP_001532712.1,GeneID:5712545;gbkey=CDS;product=class II aldolase%2Fadducin family protein;protein_id=YP_001532712.1;transl_table=11
NC_009952.1	RefSeq	gene	1422758	1424209	.	+	.	ID=gene1388;Name=dht;Dbxref=GeneID:5712546;gbkey=Gene;gene=dht;locus_tag=Dshi_1370
NC_009952.1	RefSeq	CDS	1422758	1424209	.	+	0	ID=cds1364;Name=YP_001532713.1;Parent=gene1388;Note=catalyzes the hydrolytic cleavage of hydantoin with aromatic side chains at the 5%27position;Dbxref=Genbank:YP_001532713.1,GeneID:5712546;gbkey=CDS;gene=dht;product=phenylhydantoinase;protein_id=YP_001532713.1;transl_table=11
NC_009952.1	RefSeq	gene	1424219	1425220	.	+	.	ID=gene1389;Name=Dshi_1371;Dbxref=GeneID:5712547;gbkey=Gene;locus_tag=Dshi_1371
NC_009952.1	RefSeq	CDS	1424219	1425220	.	+	0	ID=cds1365;Name=YP_001532714.1;Parent=gene1389;Note=ABC transporter %28importer%29 gene cluster %28disrupted%29: ATP binding cassette %28ABC%29 domain%3B part of a heterotetramer;Dbxref=Genbank:YP_001532714.1,GeneID:5712547;gbkey=CDS;product=ABC transporter-like protein;protein_id=YP_001532714.1;transl_table=11
NC_009952.1	RefSeq	gene	1425233	1426150	.	+	.	ID=gene1390;Name=Dshi_1372;Dbxref=GeneID:5712548;gbkey=Gene;locus_tag=Dshi_1372
NC_009952.1	RefSeq	CDS	1425233	1426150	.	+	0	ID=cds1366;Name=YP_001532715.1;Parent=gene1390;Note=ABC transporter %28importer%29 gene cluster: 1st membrane spanning domain %28MSD%29%3B part of a heterotetramer;Dbxref=Genbank:YP_001532715.1,GeneID:5712548;gbkey=CDS;product=binding-protein-dependent transport system inner membrane protein;protein_id=YP_001532715.1;transl_table=11
NC_009952.1	RefSeq	gene	1426147	1427058	.	+	.	ID=gene1391;Name=Dshi_1373;Dbxref=GeneID:5712549;gbkey=Gene;locus_tag=Dshi_1373
NC_009952.1	RefSeq	CDS	1426147	1427058	.	+	0	ID=cds1367;Name=YP_001532716.1;Parent=gene1391;Note=ABC transporter %28importer%29 gene cluster: 2nd membrane spanning domain %28MSD%29%3B part of a heterotetramer;Dbxref=Genbank:YP_001532716.1,GeneID:5712549;gbkey=CDS;product=binding-protein-dependent transport system inner membrane protein;protein_id=YP_001532716.1;transl_table=11
NC_009952.1	RefSeq	gene	1427332	1428321	.	+	.	ID=gene1392;Name=Dshi_1374;Dbxref=GeneID:5712550;gbkey=Gene;locus_tag=Dshi_1374
NC_009952.1	RefSeq	CDS	1427332	1428321	.	+	0	ID=cds1368;Name=YP_001532717.1;Parent=gene1392;Note=ABC transporter %28importer%29 gene cluster: receptor;Dbxref=Genbank:YP_001532717.1,GeneID:5712550;gbkey=CDS;product=NMT1%2FTHI5 like domain-containing protein;protein_id=YP_001532717.1;transl_table=11
NC_009952.1	RefSeq	gene	1428663	1429859	.	+	.	ID=gene1393;Name=Dshi_1375;Dbxref=GeneID:5712551;gbkey=Gene;locus_tag=Dshi_1375
NC_009952.1	RefSeq	CDS	1428663	1429859	.	+	0	ID=cds1369;Name=YP_001532718.1;Parent=gene1393;Dbxref=Genbank:YP_001532718.1,GeneID:5712551;gbkey=CDS;product=ornithine decarboxylase;protein_id=YP_001532718.1;transl_table=11
NC_009952.1	RefSeq	gene	1429916	1430713	.	-	.	ID=gene1394;Name=Dshi_1376;Dbxref=GeneID:5712552;gbkey=Gene;locus_tag=Dshi_1376
NC_009952.1	RefSeq	CDS	1429916	1430713	.	-	0	ID=cds1370;Name=YP_001532719.1;Parent=gene1394;Note=catalyses the hydrolysis of creatinine to creatine;Dbxref=Genbank:YP_001532719.1,GeneID:5712552;gbkey=CDS;product=creatininase;protein_id=YP_001532719.1;transl_table=11
NC_009952.1	RefSeq	gene	1430706	1431608	.	-	.	ID=gene1395;Name=Dshi_1377;Dbxref=GeneID:5712553;gbkey=Gene;locus_tag=Dshi_1377
NC_009952.1	RefSeq	CDS	1430706	1431608	.	-	0	ID=cds1371;Name=YP_001532720.1;Parent=gene1395;Note=This family contains members of the 2-oxoglutarate %282OG%29 and Fe%28II%29-dependent oxygenase superfamily;Dbxref=Genbank:YP_001532720.1,GeneID:5712553;gbkey=CDS;product=2OG-Fe%28II%29 oxygenase;protein_id=YP_001532720.1;transl_table=11
NC_009952.1	RefSeq	gene	1431608	1432243	.	-	.	ID=gene1396;Name=Dshi_1378;Dbxref=GeneID:5712554;gbkey=Gene;locus_tag=Dshi_1378
NC_009952.1	RefSeq	CDS	1431608	1432243	.	-	0	ID=cds1372;Name=YP_001532721.1;Parent=gene1396;Note=catalyseses the NAD%28P%29H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species;Dbxref=Genbank:YP_001532721.1,GeneID:5712554;gbkey=CDS;product=quinone dependent NAD%28P%29H dehydrogenase;protein_id=YP_001532721.1;transl_table=11
NC_009952.1	RefSeq	gene	1432243	1432830	.	-	.	ID=gene1397;Name=Dshi_1379;Dbxref=GeneID:5712555;gbkey=Gene;locus_tag=Dshi_1379
NC_009952.1	RefSeq	CDS	1432243	1432830	.	-	0	ID=cds1373;Name=YP_001532722.1;Parent=gene1397;Note=catalyseses the NAD%28P%29H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species;Dbxref=Genbank:YP_001532722.1,GeneID:5712555;gbkey=CDS;product=quinone dependent NADH dehydrogenase;protein_id=YP_001532722.1;transl_table=11
NC_009952.1	RefSeq	gene	1432949	1434355	.	-	.	ID=gene1398;Name=Dshi_1380;Dbxref=GeneID:5712556;gbkey=Gene;locus_tag=Dshi_1380
NC_009952.1	RefSeq	CDS	1432949	1434355	.	-	0	ID=cds1374;Name=YP_001532723.1;Parent=gene1398;Note=This family consists of various enzymes that use FAD as a co-factor%2C most of the enzymes are similar to oxygen oxidoreductase.;Dbxref=Genbank:YP_001532723.1,GeneID:5712556;gbkey=CDS;product=FAD linked oxidase domain-containing protein;protein_id=YP_001532723.1;transl_table=11
NC_009952.1	RefSeq	gene	1434352	1435626	.	-	.	ID=gene1399;Name=Dshi_1381;Dbxref=GeneID:5712557;gbkey=Gene;locus_tag=Dshi_1381
NC_009952.1	RefSeq	CDS	1434352	1435626	.	-	0	ID=cds1375;Name=YP_001532724.1;Parent=gene1399;Note=Amidohydrolases are a diverse superfamily of enzymes which catalyse the hydrolysis of amide or amine bonds in a large number of different substrates including urea%2C cytosine%2C AMP%2C formylmethanofuran;Dbxref=Genbank:YP_001532724.1,GeneID:5712557;gbkey=CDS;product=cytosine deaminase;protein_id=YP_001532724.1;transl_table=11
NC_009952.1	RefSeq	gene	1435626	1436483	.	-	.	ID=gene1400;Name=Dshi_1382;Dbxref=GeneID:5712558;gbkey=Gene;locus_tag=Dshi_1382
NC_009952.1	RefSeq	CDS	1435626	1436483	.	-	0	ID=cds1376;Name=YP_001532725.1;Parent=gene1400;Note=ABC transporter %28importer%29 gene cluster: 2nd membrane spanning domain %28MSD%29%3B part of a heterotetramer;Dbxref=Genbank:YP_001532725.1,GeneID:5712558;gbkey=CDS;product=binding-protein-dependent transport system inner membrane protein;protein_id=YP_001532725.1;transl_table=11
NC_009952.1	RefSeq	gene	1436480	1437289	.	-	.	ID=gene1401;Name=Dshi_1383;Dbxref=GeneID:5712559;gbkey=Gene;locus_tag=Dshi_1383
NC_009952.1	RefSeq	CDS	1436480	1437289	.	-	0	ID=cds1377;Name=YP_001532726.1;Parent=gene1401;Note=ABC transporter %28importer%29 gene cluster: ATP binding cassette %28ABC%29 domain%3B part of a heterotetramer;Dbxref=Genbank:YP_001532726.1,GeneID:5712559;gbkey=CDS;product=ABC transporter-like protein;protein_id=YP_001532726.1;transl_table=11
NC_009952.1	RefSeq	gene	1437354	1438355	.	-	.	ID=gene1402;Name=Dshi_1384;Dbxref=GeneID:5712560;gbkey=Gene;locus_tag=Dshi_1384
NC_009952.1	RefSeq	CDS	1437354	1438355	.	-	0	ID=cds1378;Name=YP_001532727.1;Parent=gene1402;Note=ABC transporter %28importer%29 gene cluster: 1st membrane spanning domain %28MSD%29%3B part of a heterotetramer;Dbxref=Genbank:YP_001532727.1,GeneID:5712560;gbkey=CDS;product=ABC transporter permease;protein_id=YP_001532727.1;transl_table=11
NC_009952.1	RefSeq	gene	1438594	1438992	.	+	.	ID=gene1403;Name=Dshi_1385;Dbxref=GeneID:5712561;gbkey=Gene;locus_tag=Dshi_1385
NC_009952.1	RefSeq	CDS	1438594	1438992	.	+	0	ID=cds1379;Name=YP_001532728.1;Parent=gene1403;Note=Endoribonuclease active on single-stranded mRNA. Inhibits protein synthesis by cleavage of mRNA;Dbxref=Genbank:YP_001532728.1,GeneID:5712561;gbkey=CDS;product=endoribonuclease L-PSP;protein_id=YP_001532728.1;transl_table=11
NC_009952.1	RefSeq	gene	1438996	1440408	.	-	.	ID=gene1404;Name=Dshi_1386;Dbxref=GeneID:5712562;gbkey=Gene;locus_tag=Dshi_1386
NC_009952.1	RefSeq	CDS	1438996	1440408	.	-	0	ID=cds1380;Name=YP_001532729.1;Parent=gene1404;Dbxref=Genbank:YP_001532729.1,GeneID:5712562;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532729.1;transl_table=11
NC_009952.1	RefSeq	gene	1440553	1441812	.	-	.	ID=gene1405;Name=clpX;Dbxref=GeneID:5712563;gbkey=Gene;gene=clpX;locus_tag=Dshi_1387
NC_009952.1	RefSeq	CDS	1440553	1441812	.	-	0	ID=cds1381;Name=YP_001532730.1;Parent=gene1405;Note=binds and unfolds substrates as part of the ClpXP protease;Dbxref=Genbank:YP_001532730.1,GeneID:5712563;gbkey=CDS;gene=clpX;product=ATP-dependent protease ATP-binding subunit ClpX;protein_id=YP_001532730.1;transl_table=11
NC_009952.1	RefSeq	gene	1442020	1442646	.	-	.	ID=gene1406;Name=clpP;Dbxref=GeneID:5712564;gbkey=Gene;gene=clpP;locus_tag=Dshi_1388
NC_009952.1	RefSeq	CDS	1442020	1442646	.	-	0	ID=cds1382;Name=YP_001532731.1;Parent=gene1406;Note=hydrolyzes proteins to small peptides%3B with the ATPase subunits ClpA or ClpX%2C ClpP degrades specific substrates;Dbxref=Genbank:YP_001532731.1,GeneID:5712564;gbkey=CDS;gene=clpP;product=ATP-dependent Clp protease proteolytic subunit;protein_id=YP_001532731.1;transl_table=11
NC_009952.1	RefSeq	gene	1442883	1444100	.	+	.	ID=gene1407;Name=Dshi_1389;Dbxref=GeneID:5712565;gbkey=Gene;locus_tag=Dshi_1389
NC_009952.1	RefSeq	CDS	1442883	1444100	.	+	0	ID=cds1383;Name=YP_001532732.1;Parent=gene1407;Dbxref=Genbank:YP_001532732.1,GeneID:5712565;gbkey=CDS;product=putative deoxyribodipyrimidine photo-lyase;protein_id=YP_001532732.1;transl_table=11
NC_009952.1	RefSeq	gene	1444131	1444565	.	+	.	ID=gene1408;Name=Dshi_1390;Dbxref=GeneID:5712566;gbkey=Gene;locus_tag=Dshi_1390
NC_009952.1	RefSeq	CDS	1444131	1444565	.	+	0	ID=cds1384;Name=YP_001532733.1;Parent=gene1408;Note=Provides the input to the respiratory chain from the NAD-linked dehydrogenases of the citric acid cycle. The complex couples the oxidation of NADH and the reduction of ubiquinone%2C to the generation of a proton gradient which is then used for ATP synthesis;Dbxref=Genbank:YP_001532733.1,GeneID:5712566;gbkey=CDS;product=NADH dehydrogenase;protein_id=YP_001532733.1;transl_table=11
NC_009952.1	RefSeq	gene	1444613	1445059	.	+	.	ID=gene1409;Name=Dshi_1391;Dbxref=GeneID:5712567;gbkey=Gene;locus_tag=Dshi_1391
NC_009952.1	RefSeq	CDS	1444613	1445059	.	+	0	ID=cds1385;Name=YP_001532734.1;Parent=gene1409;Note=Mammalian cell entry related domain;Dbxref=Genbank:YP_001532734.1,GeneID:5712567;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532734.1;transl_table=11
NC_009952.1	RefSeq	gene	1445056	1445598	.	+	.	ID=gene1410;Name=Dshi_1392;Dbxref=GeneID:5712568;gbkey=Gene;locus_tag=Dshi_1392
NC_009952.1	RefSeq	CDS	1445056	1445598	.	+	0	ID=cds1386;Name=YP_001532735.1;Parent=gene1410;Dbxref=Genbank:YP_001532735.1,GeneID:5712568;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532735.1;transl_table=11
NC_009952.1	RefSeq	gene	1445608	1446195	.	-	.	ID=gene1411;Name=Dshi_1393;Dbxref=GeneID:5712569;gbkey=Gene;locus_tag=Dshi_1393
NC_009952.1	RefSeq	CDS	1445608	1446195	.	-	0	ID=cds1387;Name=YP_001532736.1;Parent=gene1411;Dbxref=Genbank:YP_001532736.1,GeneID:5712569;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532736.1;transl_table=11
NC_009952.1	RefSeq	gene	1446363	1447034	.	-	.	ID=gene1412;Name=aat;Dbxref=GeneID:5712570;gbkey=Gene;gene=aat;locus_tag=Dshi_1394
NC_009952.1	RefSeq	CDS	1446363	1447034	.	-	0	ID=cds1388;Name=YP_001532737.1;Parent=gene1412;Note=transfers a Leu or Phe to the amino end of certain proteins to enable degradation. The N-terminal residue controls the biological half-life of many proteins via the N-end rule pathway.;Dbxref=Genbank:YP_001532737.1,GeneID:5712570;gbkey=CDS;gene=aat;product=leucyltransferase;protein_id=YP_001532737.1;transl_table=11
NC_009952.1	RefSeq	gene	1447094	1448440	.	-	.	ID=gene1413;Name=accC;Dbxref=GeneID:5712571;gbkey=Gene;gene=accC;locus_tag=Dshi_1395
NC_009952.1	RefSeq	CDS	1447094	1448440	.	-	0	ID=cds1389;Name=YP_001532738.1;Parent=gene1413;Note=an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase%2C an enzyme that catalyzes the formation of malonyl-CoA%2C which in turn controls the rate of fatty acid metabolism;Dbxref=Genbank:YP_001532738.1,GeneID:5712571;gbkey=CDS;gene=accC;product=acetyl-CoA carboxylase biotin carboxylase subunit;protein_id=YP_001532738.1;transl_table=11
NC_009952.1	RefSeq	gene	1448450	1448977	.	-	.	ID=gene1414;Name=accB;Dbxref=GeneID:5712572;gbkey=Gene;gene=accB;locus_tag=Dshi_1396
NC_009952.1	RefSeq	CDS	1448450	1448977	.	-	0	ID=cds1390;Name=YP_001532739.1;Parent=gene1414;Note=This protein is a component of the acetyl coenzyme A carboxylase complex%3B first%2C biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.%3B biotin carboxyl carrier protein;Dbxref=Genbank:YP_001532739.1,GeneID:5712572;gbkey=CDS;gene=accB;product=acetyl-CoA carboxylase;protein_id=YP_001532739.1;transl_table=11
NC_009952.1	RefSeq	gene	1449132	1450748	.	+	.	ID=gene1415;Name=Dshi_1397;Dbxref=GeneID:5712573;gbkey=Gene;locus_tag=Dshi_1397
NC_009952.1	RefSeq	CDS	1449132	1450748	.	+	0	ID=cds1391;Name=YP_001532740.1;Parent=gene1415;Note=contains several Hemolysin-type calcium-binding repeats found in proteins that are secreted into the growth medium by a mechanism that does not require a cleaved N-terminal signal sequence;Dbxref=Genbank:YP_001532740.1,GeneID:5712573;gbkey=CDS;product=phospholipase%2Flecithinase%2Fhemolysin-like protein;protein_id=YP_001532740.1;transl_table=11
NC_009952.1	RefSeq	gene	1450880	1451332	.	+	.	ID=gene1416;Name=Dshi_1398;Dbxref=GeneID:5712574;gbkey=Gene;locus_tag=Dshi_1398
NC_009952.1	RefSeq	CDS	1450880	1451332	.	+	0	ID=cds1392;Name=YP_001532741.1;Parent=gene1416;Note=domain structure is similar to that of dehydrogenases%2C amidohydrolases%2C and oxidoreductases%2C however sequence and structural analyses have shown that it does not belong to the dehydrogenase or the amidohydrolase superfamilies of proteins;Dbxref=Genbank:YP_001532741.1,GeneID:5712574;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532741.1;transl_table=11
NC_009952.1	RefSeq	gene	1451413	1453374	.	-	.	ID=gene1417;Name=acsA;Dbxref=GeneID:5712575;gbkey=Gene;gene=acsA;locus_tag=Dshi_1399
NC_009952.1	RefSeq	CDS	1451413	1453374	.	-	0	ID=cds1393;Name=YP_001532742.1;Parent=gene1417;Note=Enables the cell to use acetate during aerobic growth to generate energy via the TCA cycle%2C and biosynthetic compounds via the glyoxylate shunt. Acetylates cheY%2C the response regulator involved in flagellar movement and chemotaxis.;Dbxref=Genbank:YP_001532742.1,GeneID:5712575;gbkey=CDS;gene=acsA;product=acetate--CoA ligase;protein_id=YP_001532742.1;transl_table=11
NC_009952.1	RefSeq	gene	1453619	1454374	.	-	.	ID=gene1418;Name=Dshi_1400;Dbxref=GeneID:5712576;gbkey=Gene;locus_tag=Dshi_1400
NC_009952.1	RefSeq	CDS	1453619	1454374	.	-	0	ID=cds1394;Name=YP_001532743.1;Parent=gene1418;Note=ABC transporter %28importer%29 gene cluster: 2nd ATP binding cassette %28ABC%29 domain%3B part of a heterotetramer;Dbxref=Genbank:YP_001532743.1,GeneID:5712576;gbkey=CDS;product=ABC transporter-like protein;protein_id=YP_001532743.1;transl_table=11
NC_009952.1	RefSeq	gene	1454386	1455144	.	-	.	ID=gene1419;Name=Dshi_1401;Dbxref=GeneID:5712577;gbkey=Gene;locus_tag=Dshi_1401
NC_009952.1	RefSeq	CDS	1454386	1455144	.	-	0	ID=cds1395;Name=YP_001532744.1;Parent=gene1419;Note=ABC transporter %28importer%29 gene cluster: 1st ATP binding cassette %28ABC%29 domain%3B part of a heterotetramer;Dbxref=Genbank:YP_001532744.1,GeneID:5712577;gbkey=CDS;product=ABC transporter-like protein;protein_id=YP_001532744.1;transl_table=11
NC_009952.1	RefSeq	gene	1455157	1456365	.	-	.	ID=gene1420;Name=Dshi_1402;Dbxref=GeneID:5712578;gbkey=Gene;locus_tag=Dshi_1402
NC_009952.1	RefSeq	CDS	1455157	1456365	.	-	0	ID=cds1396;Name=YP_001532745.1;Parent=gene1420;Note=ABC transporter %28importer%29 gene cluster: 2nd membrane spanning domain %28MSD%29%3B part of a heterotetramer;Dbxref=Genbank:YP_001532745.1,GeneID:5712578;gbkey=CDS;product=inner-membrane translocator;protein_id=YP_001532745.1;transl_table=11
NC_009952.1	RefSeq	gene	1456370	1457401	.	-	.	ID=gene1421;Name=Dshi_1403;Dbxref=GeneID:5712579;gbkey=Gene;locus_tag=Dshi_1403
NC_009952.1	RefSeq	CDS	1456370	1457401	.	-	0	ID=cds1397;Name=YP_001532746.1;Parent=gene1421;Note=ABC transporter %28importer%29 gene cluster: 1st membrane spanning domain %28MSD%29%3B part of a heterotetramer;Dbxref=Genbank:YP_001532746.1,GeneID:5712579;gbkey=CDS;product=inner-membrane translocator;protein_id=YP_001532746.1;transl_table=11
NC_009952.1	RefSeq	gene	1457511	1458866	.	-	.	ID=gene1422;Name=Dshi_1404;Dbxref=GeneID:5712580;gbkey=Gene;locus_tag=Dshi_1404
NC_009952.1	RefSeq	CDS	1457511	1458866	.	-	0	ID=cds1398;Name=YP_001532747.1;Parent=gene1422;Note=ABC transporter %28importer%29 gene cluster: receptor%3B periplasmic binding protein%2C putative;Dbxref=Genbank:YP_001532747.1,GeneID:5712580;gbkey=CDS;product=branched-chain amino acid ABC transporter;protein_id=YP_001532747.1;transl_table=11
NC_009952.1	RefSeq	gene	1459097	1460392	.	+	.	ID=gene1423;Name=Dshi_1405;Dbxref=GeneID:5712581;gbkey=Gene;locus_tag=Dshi_1405
NC_009952.1	RefSeq	CDS	1459097	1460392	.	+	0	ID=cds1399;Name=YP_001532748.1;Parent=gene1423;Note=Helix-Turn-Helix motif%3B XRE family;Dbxref=Genbank:YP_001532748.1,GeneID:5712581;gbkey=CDS;product=transcriptional regulator;protein_id=YP_001532748.1;transl_table=11
NC_009952.1	RefSeq	gene	1460497	1460862	.	+	.	ID=gene1424;Name=Dshi_1406;Dbxref=GeneID:5712582;gbkey=Gene;locus_tag=Dshi_1406
NC_009952.1	RefSeq	CDS	1460497	1460862	.	+	0	ID=cds1400;Name=YP_001532749.1;Parent=gene1424;Note=DNA-binding motif%2C normally found at the C-terminus%2C is missing;Dbxref=Genbank:YP_001532749.1,GeneID:5712582;gbkey=CDS;product=response regulator receiver protein;protein_id=YP_001532749.1;transl_table=11
NC_009952.1	RefSeq	gene	1460864	1461184	.	+	.	ID=gene1425;Name=Dshi_1407;Dbxref=GeneID:5712583;gbkey=Gene;locus_tag=Dshi_1407
NC_009952.1	RefSeq	CDS	1460864	1461184	.	+	0	ID=cds1401;Name=YP_001532750.1;Parent=gene1425;Dbxref=Genbank:YP_001532750.1,GeneID:5712583;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532750.1;transl_table=11
NC_009952.1	RefSeq	gene	1461184	1463877	.	+	.	ID=gene1426;Name=Dshi_1408;Dbxref=GeneID:5712584;gbkey=Gene;locus_tag=Dshi_1408
NC_009952.1	RefSeq	CDS	1461184	1463877	.	+	0	ID=cds1402;Name=YP_001532751.1;Parent=gene1426;Note=Signal transducing histidine kinases are the key elements in two-component signal transduction systems%2C which control complex processes such as the initiation of development in microorganisms;Dbxref=Genbank:YP_001532751.1,GeneID:5712584;gbkey=CDS;product=integral membrane sensor signal transduction histidine kinase;protein_id=YP_001532751.1;transl_table=11
NC_009952.1	RefSeq	gene	1463926	1464975	.	+	.	ID=gene1427;Name=Dshi_1409;Dbxref=GeneID:5712585;gbkey=Gene;locus_tag=Dshi_1409
NC_009952.1	RefSeq	CDS	1463926	1464975	.	+	0	ID=cds1403;Name=YP_001532752.1;Parent=gene1427;Dbxref=Genbank:YP_001532752.1,GeneID:5712585;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532752.1;transl_table=11
NC_009952.1	RefSeq	gene	1464988	1465500	.	-	.	ID=gene1428;Name=Dshi_1410;Dbxref=GeneID:5712586;gbkey=Gene;locus_tag=Dshi_1410
NC_009952.1	RefSeq	CDS	1464988	1465500	.	-	0	ID=cds1404;Name=YP_001532753.1;Parent=gene1428;Dbxref=Genbank:YP_001532753.1,GeneID:5712586;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532753.1;transl_table=11
NC_009952.1	RefSeq	gene	1465574	1465852	.	+	.	ID=gene1429;Name=Dshi_1411;Dbxref=GeneID:5712587;gbkey=Gene;locus_tag=Dshi_1411
NC_009952.1	RefSeq	CDS	1465574	1465852	.	+	0	ID=cds1405;Name=YP_001532754.1;Parent=gene1429;Note=TraR%2FDksA family;Dbxref=Genbank:YP_001532754.1,GeneID:5712587;gbkey=CDS;product=transcriptional regulator;protein_id=YP_001532754.1;transl_table=11
NC_009952.1	RefSeq	gene	1465891	1466133	.	+	.	ID=gene1430;Name=Dshi_1412;Dbxref=GeneID:5712588;gbkey=Gene;locus_tag=Dshi_1412
NC_009952.1	RefSeq	CDS	1465891	1466133	.	+	0	ID=cds1406;Name=YP_001532755.1;Parent=gene1430;Dbxref=Genbank:YP_001532755.1,GeneID:5712588;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532755.1;transl_table=11
NC_009952.1	RefSeq	gene	1466558	1467793	.	+	.	ID=gene1431;Name=Dshi_1413;Dbxref=GeneID:5712589;gbkey=Gene;locus_tag=Dshi_1413
NC_009952.1	RefSeq	CDS	1466558	1467793	.	+	0	ID=cds1407;Name=YP_001532756.1;Parent=gene1431;Note=ABC transporter %28importer%29 gene cluster: receptor;Dbxref=Genbank:YP_001532756.1,GeneID:5712589;gbkey=CDS;product=family 1 extracellular solute-binding protein;protein_id=YP_001532756.1;transl_table=11
NC_009952.1	RefSeq	gene	1467854	1468885	.	+	.	ID=gene1432;Name=Dshi_1414;Dbxref=GeneID:5712590;gbkey=Gene;locus_tag=Dshi_1414
NC_009952.1	RefSeq	CDS	1467854	1468885	.	+	0	ID=cds1408;Name=YP_001532757.1;Parent=gene1432;Note=ABC transporter %28importer%29 gene cluster: 1st membrane spanning domain %28MSD%29%3B part of a heterotetramer;Dbxref=Genbank:YP_001532757.1,GeneID:5712590;gbkey=CDS;product=binding-protein-dependent transport system inner membrane protein;protein_id=YP_001532757.1;transl_table=11
NC_009952.1	RefSeq	gene	1468888	1469772	.	+	.	ID=gene1433;Name=Dshi_1415;Dbxref=GeneID:5712591;gbkey=Gene;locus_tag=Dshi_1415
NC_009952.1	RefSeq	CDS	1468888	1469772	.	+	0	ID=cds1409;Name=YP_001532758.1;Parent=gene1433;Note=ABC transporter %28importer%29 gene cluster: 2nd membrane spanning domain %28MSD%29%3B part of a heterotetramer;Dbxref=Genbank:YP_001532758.1,GeneID:5712591;gbkey=CDS;product=binding-protein-dependent transport system inner membrane protein;protein_id=YP_001532758.1;transl_table=11
NC_009952.1	RefSeq	gene	1469815	1470858	.	+	.	ID=gene1434;Name=Dshi_1416;Dbxref=GeneID:5712592;gbkey=Gene;locus_tag=Dshi_1416
NC_009952.1	RefSeq	CDS	1469815	1470858	.	+	0	ID=cds1410;Name=YP_001532759.1;Parent=gene1434;Note=ABC transporter %28importer%29 gene cluster: ATP binding cassette %28ABC%29 domain%3B part of a heterotetramer;Dbxref=Genbank:YP_001532759.1,GeneID:5712592;gbkey=CDS;product=ABC transporter-like protein;protein_id=YP_001532759.1;transl_table=11
NC_009952.1	RefSeq	gene	1470855	1471379	.	+	.	ID=gene1435;Name=Dshi_1417;Dbxref=GeneID:5712593;gbkey=Gene;locus_tag=Dshi_1417
NC_009952.1	RefSeq	CDS	1470855	1471379	.	+	0	ID=cds1411;Name=YP_001532760.1;Parent=gene1435;Dbxref=Genbank:YP_001532760.1,GeneID:5712593;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532760.1;transl_table=11
NC_009952.1	RefSeq	gene	1471376	1471591	.	-	.	ID=gene1436;Name=Dshi_1418;Dbxref=GeneID:5712594;gbkey=Gene;locus_tag=Dshi_1418
NC_009952.1	RefSeq	CDS	1471376	1471591	.	-	0	ID=cds1412;Name=YP_001532761.1;Parent=gene1436;Note=conserved in Rhodobacteraceae;Dbxref=Genbank:YP_001532761.1,GeneID:5712594;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532761.1;transl_table=11
NC_009952.1	RefSeq	gene	1471738	1472016	.	+	.	ID=gene1437;Name=Dshi_1419;Dbxref=GeneID:5712595;gbkey=Gene;locus_tag=Dshi_1419
NC_009952.1	RefSeq	CDS	1471738	1472016	.	+	0	ID=cds1413;Name=YP_001532762.1;Parent=gene1437;Dbxref=Genbank:YP_001532762.1,GeneID:5712595;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532762.1;transl_table=11
NC_009952.1	RefSeq	gene	1472033	1472908	.	-	.	ID=gene1438;Name=Dshi_1420;Dbxref=GeneID:5712596;gbkey=Gene;locus_tag=Dshi_1420
NC_009952.1	RefSeq	CDS	1472033	1472908	.	-	0	ID=cds1414;Name=YP_001532763.1;Parent=gene1438;Note=conserved in Rhodobacteraceae;Dbxref=Genbank:YP_001532763.1,GeneID:5712596;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532763.1;transl_table=11
NC_009952.1	RefSeq	gene	1473081	1473156	.	+	.	ID=gene1439;Name=Dshi_6025;Dbxref=GeneID:5712597;gbkey=Gene;locus_tag=Dshi_6025
NC_009952.1	RefSeq	tRNA	1473081	1473156	.	+	.	ID=rna24;Parent=gene1439;Dbxref=GeneID:5712597;codons=38;gbkey=tRNA;product=tRNA-Thr
NC_009952.1	RefSeq	exon	1473081	1473156	.	+	.	ID=id28;Parent=rna24;Dbxref=GeneID:5712597;codons=38;gbkey=tRNA;product=tRNA-Thr
NC_009952.1	RefSeq	gene	1473533	1474705	.	+	.	ID=gene1440;Name=Dshi_1421;Dbxref=GeneID:5712598;gbkey=Gene;locus_tag=Dshi_1421
NC_009952.1	RefSeq	CDS	1473533	1474705	.	+	0	ID=cds1415;Name=YP_001532764.1;Parent=gene1440;Note=ABC transporter %28importer%29 gene cluster: receptor%3B substrate-binding protein;Dbxref=Genbank:YP_001532764.1,GeneID:5712598;gbkey=CDS;product=ribose ABC transporter;protein_id=YP_001532764.1;transl_table=11
NC_009952.1	RefSeq	gene	1474762	1476309	.	+	.	ID=gene1441;Name=rbsA3;Dbxref=GeneID:5712599;gbkey=Gene;gene=rbsA3;locus_tag=Dshi_1422
NC_009952.1	RefSeq	CDS	1474762	1476309	.	+	0	ID=cds1416;Name=YP_001532765.1;Parent=gene1441;Note=ABC transporter %28importer%29 gene cluster: fused ATP binding cassette %28ABC%29 domains%3B part of a heterotrimer;Dbxref=Genbank:YP_001532765.1,GeneID:5712599;gbkey=CDS;gene=rbsA3;product=ABC transporter-like protein;protein_id=YP_001532765.1;transl_table=11
NC_009952.1	RefSeq	gene	1476309	1477271	.	+	.	ID=gene1442;Name=rbsB2;Dbxref=GeneID:5712600;gbkey=Gene;gene=rbsB2;locus_tag=Dshi_1423
NC_009952.1	RefSeq	CDS	1476309	1477271	.	+	0	ID=cds1417;Name=YP_001532766.1;Parent=gene1442;Note=ABC transporter %28importer%29 gene cluster: 1st membrane spanning domain %28MSD%29%3B part of a heterotrimer;Dbxref=Genbank:YP_001532766.1,GeneID:5712600;gbkey=CDS;gene=rbsB2;product=inner-membrane translocator;protein_id=YP_001532766.1;transl_table=11
NC_009952.1	RefSeq	gene	1477271	1478302	.	+	.	ID=gene1443;Name=rbsC1;Dbxref=GeneID:5712601;gbkey=Gene;gene=rbsC1;locus_tag=Dshi_1424
NC_009952.1	RefSeq	CDS	1477271	1478302	.	+	0	ID=cds1418;Name=YP_001532767.1;Parent=gene1443;Note=ABC transporter %28importer%29 gene cluster: 2nd membrane spanning domain %28MSD%29%3B part of a heterotrimer;Dbxref=Genbank:YP_001532767.1,GeneID:5712601;gbkey=CDS;gene=rbsC1;product=inner-membrane translocator;protein_id=YP_001532767.1;transl_table=11
NC_009952.1	RefSeq	gene	1478321	1479775	.	+	.	ID=gene1444;Name=Dshi_1425;Dbxref=GeneID:5712602;gbkey=Gene;locus_tag=Dshi_1425
NC_009952.1	RefSeq	CDS	1478321	1479775	.	+	0	ID=cds1419;Name=YP_001532768.1;Parent=gene1444;Note=This family of dehydrogenases act on aldehyde substrates. Members use NADP as a cofactor %28PFAM%2C INTERPRO%3B COG: NAD-dependent enzyme%29.;Dbxref=Genbank:YP_001532768.1,GeneID:5712602;gbkey=CDS;product=aldehyde dehydrogenase;protein_id=YP_001532768.1;transl_table=11
NC_009952.1	RefSeq	gene	1479836	1481350	.	+	.	ID=gene1445;Name=Dshi_1426;Dbxref=GeneID:5712603;gbkey=Gene;locus_tag=Dshi_1426
NC_009952.1	RefSeq	CDS	1479836	1481350	.	+	0	ID=cds1420;Name=YP_001532769.1;Parent=gene1445;Note=Fumarase%2C or fumarate hydratase%2C is a component of the citric acid cycle.%3B Fe-S type%2C tartrate%2Ffumarate subfamily%2C alpha subunit;Dbxref=Genbank:YP_001532769.1,GeneID:5712603;gbkey=CDS;product=hydro-lyase;protein_id=YP_001532769.1;transl_table=11
NC_009952.1	RefSeq	gene	1481361	1482908	.	+	.	ID=gene1446;Name=citF;Dbxref=GeneID:5712604;gbkey=Gene;gene=citF;locus_tag=Dshi_1427
NC_009952.1	RefSeq	CDS	1481361	1482908	.	+	0	ID=cds1421;Name=YP_001532770.1;Parent=gene1446;Note=represents a citrate:acetyl-ACP transferase%2C alpha subunit of the holoenzyme citrate lyase composed of alpha%2C beta%2C and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6TCA-cycle;Dbxref=Genbank:YP_001532770.1,GeneID:5712604;gbkey=CDS;gene=citF;product=citrate CoA-transferase;protein_id=YP_001532770.1;transl_table=11
NC_009952.1	RefSeq	gene	1483002	1484636	.	-	.	ID=gene1447;Name=Dshi_1428;Dbxref=GeneID:5712605;gbkey=Gene;locus_tag=Dshi_1428
NC_009952.1	RefSeq	CDS	1483002	1484636	.	-	0	ID=cds1422;Name=YP_001532771.1;Parent=gene1447;Note=Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine;Dbxref=Genbank:YP_001532771.1,GeneID:5712605;gbkey=CDS;product=glucose-methanol-choline oxidoreductase;protein_id=YP_001532771.1;transl_table=11
NC_009952.1	RefSeq	gene	1484787	1485557	.	-	.	ID=gene1448;Name=fabG;Dbxref=GeneID:5712606;gbkey=Gene;gene=fabG;locus_tag=Dshi_1429
NC_009952.1	RefSeq	CDS	1484787	1485557	.	-	0	ID=cds1423;Name=YP_001532772.1;Parent=gene1448;Note=Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis;Dbxref=Genbank:YP_001532772.1,GeneID:5712606;gbkey=CDS;gene=fabG;product=3-ketoacyl-ACP reductase;protein_id=YP_001532772.1;transl_table=11
NC_009952.1	RefSeq	gene	1485573	1487036	.	-	.	ID=gene1449;Name=Dshi_1430;Dbxref=GeneID:5712607;gbkey=Gene;locus_tag=Dshi_1430
NC_009952.1	RefSeq	CDS	1485573	1487036	.	-	0	ID=cds1424;Name=YP_001532773.1;Parent=gene1449;Note=This family of dehydrogenases act on aldehyde substrates. Members use NADP as a cofactor.;Dbxref=Genbank:YP_001532773.1,GeneID:5712607;gbkey=CDS;product=aldehyde dehydrogenase;protein_id=YP_001532773.1;transl_table=11
NC_009952.1	RefSeq	gene	1487135	1488091	.	-	.	ID=gene1450;Name=Dshi_1431;Dbxref=GeneID:5712608;gbkey=Gene;locus_tag=Dshi_1431
NC_009952.1	RefSeq	CDS	1487135	1488091	.	-	0	ID=cds1425;Name=YP_001532774.1;Parent=gene1450;Note=contains substrate binding domain%2C putative homotetramer%3B LysR family;Dbxref=Genbank:YP_001532774.1,GeneID:5712608;gbkey=CDS;product=transcriptional regulator;protein_id=YP_001532774.1;transl_table=11
NC_009952.1	RefSeq	gene	1488222	1489370	.	+	.	ID=gene1451;Name=Dshi_1432;Dbxref=GeneID:5712609;gbkey=Gene;locus_tag=Dshi_1432
NC_009952.1	RefSeq	CDS	1488222	1489370	.	+	0	ID=cds1426;Name=YP_001532775.1;Parent=gene1451;Note=These CoA-transferases occur in prokaryotes and eukaryotes%2C and catalyse CoA-transfer reactions in a highly substrate- and stereo-specific manner%2C Members: formyl-CoA:oxalate CoA-transferase%2C succinyl-CoA:%28R%29-benzylsuccinate CoA-transferase%2C %28E%29-cinnamoyl-CoA:%28R%29-phenyllactate CoA-transferase%2C butyrobetainyl-CoA:%28R%29-carnitine CoA-transferase;Dbxref=Genbank:YP_001532775.1,GeneID:5712609;gbkey=CDS;product=L-carnitine dehydratase%2Fbile acid-inducible protein F;protein_id=YP_001532775.1;transl_table=11
NC_009952.1	RefSeq	gene	1489582	1490181	.	+	.	ID=gene1452;Name=Dshi_1433;Dbxref=GeneID:5712610;gbkey=Gene;locus_tag=Dshi_1433
NC_009952.1	RefSeq	CDS	1489582	1490181	.	+	0	ID=cds1427;Name=YP_001532776.1;Parent=gene1452;Dbxref=Genbank:YP_001532776.1,GeneID:5712610;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532776.1;transl_table=11
NC_009952.1	RefSeq	gene	1490184	1490399	.	+	.	ID=gene1453;Name=Dshi_1434;Dbxref=GeneID:5712611;gbkey=Gene;locus_tag=Dshi_1434
NC_009952.1	RefSeq	CDS	1490184	1490399	.	+	0	ID=cds1428;Name=YP_001532777.1;Parent=gene1453;Note=remnant of Xaa-Pro dipeptidase;Dbxref=Genbank:YP_001532777.1,GeneID:5712611;gbkey=CDS;product=Xaa-Pro dipeptidase;protein_id=YP_001532777.1;transl_table=11
NC_009952.1	RefSeq	gene	1490378	1491148	.	-	.	ID=gene1454;Name=Dshi_1435;Dbxref=GeneID:5712612;gbkey=Gene;locus_tag=Dshi_1435
NC_009952.1	RefSeq	CDS	1490378	1491148	.	-	0	ID=cds1429;Name=YP_001532778.1;Parent=gene1454;Note=domain is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function;Dbxref=Genbank:YP_001532778.1,GeneID:5712612;gbkey=CDS;product=alpha%2Fbeta hydrolase fold protein;protein_id=YP_001532778.1;transl_table=11
NC_009952.1	RefSeq	gene	1491145	1492686	.	-	.	ID=gene1455;Name=Dshi_1436;Dbxref=GeneID:5712613;gbkey=Gene;locus_tag=Dshi_1436
NC_009952.1	RefSeq	CDS	1491145	1492686	.	-	0	ID=cds1430;Name=YP_001532779.1;Parent=gene1455;Note=ABC transporter gene cluster%2C permease component;Dbxref=Genbank:YP_001532779.1,GeneID:5712613;gbkey=CDS;product=binding-protein-dependent transport system inner membrane protein;protein_id=YP_001532779.1;transl_table=11
NC_009952.1	RefSeq	gene	1492683	1493738	.	-	.	ID=gene1456;Name=Dshi_1437;Dbxref=GeneID:5712614;gbkey=Gene;locus_tag=Dshi_1437
NC_009952.1	RefSeq	CDS	1492683	1493738	.	-	0	ID=cds1431;Name=YP_001532780.1;Parent=gene1456;Note=ABC transporter gene cluster%2C ATPase component%3B ATPase subunit;Dbxref=Genbank:YP_001532780.1,GeneID:5712614;gbkey=CDS;product=glycine betaine%2FL-proline ABC transporter;protein_id=YP_001532780.1;transl_table=11
NC_009952.1	RefSeq	gene	1493812	1494777	.	-	.	ID=gene1457;Name=Dshi_1438;Dbxref=GeneID:5712615;gbkey=Gene;locus_tag=Dshi_1438
NC_009952.1	RefSeq	CDS	1493812	1494777	.	-	0	ID=cds1432;Name=YP_001532781.1;Parent=gene1457;Note=ABC transporter gene cluster%2C periplasmatic substrate binding component;Dbxref=Genbank:YP_001532781.1,GeneID:5712615;gbkey=CDS;product=glycine betaine ABC transporter substrate binding protein;protein_id=YP_001532781.1;transl_table=11
NC_009952.1	RefSeq	gene	1494829	1495872	.	-	.	ID=gene1458;Name=Dshi_1439;Dbxref=GeneID:5712616;gbkey=Gene;locus_tag=Dshi_1439
NC_009952.1	RefSeq	CDS	1494829	1495872	.	-	0	ID=cds1433;Name=YP_001532782.1;Parent=gene1458;Note=catalyzes the formation of pyruvate from D-cysteine;Dbxref=Genbank:YP_001532782.1,GeneID:5712616;gbkey=CDS;product=D-cysteine desulfhydrase;protein_id=YP_001532782.1;transl_table=11
NC_009952.1	RefSeq	gene	1495960	1496892	.	+	.	ID=gene1459;Name=Dshi_1440;Dbxref=GeneID:5712617;gbkey=Gene;locus_tag=Dshi_1440
NC_009952.1	RefSeq	CDS	1495960	1496892	.	+	0	ID=cds1434;Name=YP_001532783.1;Parent=gene1459;Note=contains substrate binding domain%2C putative homotetramer%3B LysR family;Dbxref=Genbank:YP_001532783.1,GeneID:5712617;gbkey=CDS;product=transcriptional regulator;protein_id=YP_001532783.1;transl_table=11
NC_009952.1	RefSeq	gene	1497052	1498287	.	+	.	ID=gene1460;Name=Dshi_1441;Dbxref=GeneID:5712618;gbkey=Gene;locus_tag=Dshi_1441
NC_009952.1	RefSeq	CDS	1497052	1498287	.	+	0	ID=cds1435;Name=YP_001532784.1;Parent=gene1460;Note=C-Terminus conserved;Dbxref=Genbank:YP_001532784.1,GeneID:5712618;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532784.1;transl_table=11
NC_009952.1	RefSeq	gene	1498290	1499732	.	+	.	ID=gene1461;Name=Dshi_1442;Dbxref=GeneID:5712619;gbkey=Gene;locus_tag=Dshi_1442
NC_009952.1	RefSeq	CDS	1498290	1499732	.	+	0	ID=cds1436;Name=YP_001532785.1;Parent=gene1461;Dbxref=Genbank:YP_001532785.1,GeneID:5712619;gbkey=CDS;product=peroxidase;protein_id=YP_001532785.1;transl_table=11
NC_009952.1	RefSeq	gene	1499876	1500844	.	+	.	ID=gene1462;Name=Dshi_1443;Dbxref=GeneID:5712620;gbkey=Gene;locus_tag=Dshi_1443
NC_009952.1	RefSeq	CDS	1499876	1500844	.	+	0	ID=cds1437;Name=YP_001532786.1;Parent=gene1462;Note=TRAP gene cluster - dctPQM%3B TAXI family;Dbxref=Genbank:YP_001532786.1,GeneID:5712620;gbkey=CDS;product=TRAP transporter solute receptor;protein_id=YP_001532786.1;transl_table=11
NC_009952.1	RefSeq	gene	1500927	1503581	.	+	.	ID=gene1463;Name=Dshi_1444;Dbxref=GeneID:5712621;gbkey=Gene;locus_tag=Dshi_1444
NC_009952.1	RefSeq	CDS	1500927	1503581	.	+	0	ID=cds1438;Name=YP_001532787.1;Parent=gene1463;Note=TRAP gene cluster - dctPQM%3B 4TM%2F12TM fusion protein;Dbxref=Genbank:YP_001532787.1,GeneID:5712621;gbkey=CDS;product=TRAP transporter;protein_id=YP_001532787.1;transl_table=11
NC_009952.1	RefSeq	gene	1503594	1504028	.	+	.	ID=gene1464;Name=uspG;Dbxref=GeneID:5712622;gbkey=Gene;gene=uspG;locus_tag=Dshi_1445
NC_009952.1	RefSeq	CDS	1503594	1504028	.	+	0	ID=cds1439;Name=YP_001532788.1;Parent=gene1464;Note=contains 1 UspA domain%2C expression is enhanced when the cell is exposed to stress agents%2C enhances the rate of cell survival during prolonged exposure to such conditions;Dbxref=Genbank:YP_001532788.1,GeneID:5712622;gbkey=CDS;gene=uspG;product=UspA domain-containing protein;protein_id=YP_001532788.1;transl_table=11
NC_009952.1	RefSeq	gene	1504032	1505366	.	+	.	ID=gene1465;Name=Dshi_1446;Dbxref=GeneID:5712623;gbkey=Gene;locus_tag=Dshi_1446
NC_009952.1	RefSeq	CDS	1504032	1505366	.	+	0	ID=cds1440;Name=YP_001532789.1;Parent=gene1465;Note=PLP-dependent enzyme;Dbxref=Genbank:YP_001532789.1,GeneID:5712623;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532789.1;transl_table=11
NC_009952.1	RefSeq	gene	1505621	1505779	.	-	.	ID=gene1466;Name=Dshi_1447;Dbxref=GeneID:5712624;gbkey=Gene;locus_tag=Dshi_1447
NC_009952.1	RefSeq	CDS	1505621	1505779	.	-	0	ID=cds1441;Name=YP_001532790.1;Parent=gene1466;Dbxref=Genbank:YP_001532790.1,GeneID:5712624;gbkey=CDS;product=transposase;protein_id=YP_001532790.1;transl_table=11
NC_009952.1	RefSeq	gene	1506500	1506724	.	+	.	ID=gene1467;Name=Dshi_1448;Dbxref=GeneID:5712625;gbkey=Gene;locus_tag=Dshi_1448
NC_009952.1	RefSeq	CDS	1506500	1506724	.	+	0	ID=cds1442;Name=YP_001532791.1;Parent=gene1467;Dbxref=Genbank:YP_001532791.1,GeneID:5712625;gbkey=CDS;product=HTH-type transcriptional regulator ZntR;protein_id=YP_001532791.1;transl_table=11
NC_009952.1	RefSeq	gene	1506778	1509000	.	-	.	ID=gene1468;Name=Dshi_1449;Dbxref=GeneID:5712626;gbkey=Gene;locus_tag=Dshi_1449
NC_009952.1	RefSeq	CDS	1506778	1509000	.	-	0	ID=cds1443;Name=YP_001532792.1;Parent=gene1468;Note=TonB protein interacts with outer membrane receptor proteins that carry out high-affinity binding and energy-dependent uptake of specific substrates into the periplasmic space;Dbxref=Genbank:YP_001532792.1,GeneID:5712626;gbkey=CDS;product=TonB-dependent receptor;protein_id=YP_001532792.1;transl_table=11
NC_009952.1	RefSeq	gene	1509057	1510334	.	-	.	ID=gene1469;Name=Dshi_1450;Dbxref=GeneID:5712627;gbkey=Gene;locus_tag=Dshi_1450
NC_009952.1	RefSeq	CDS	1509057	1510334	.	-	0	ID=cds1444;Name=YP_001532793.1;Parent=gene1469;Note=NnrS is a putative heme-Cu protein %28NnrS%29 and a member of the short-chain dehydrogenase family.;Dbxref=Genbank:YP_001532793.1,GeneID:5712627;gbkey=CDS;product=NnrS family protein;protein_id=YP_001532793.1;transl_table=11
NC_009952.1	RefSeq	gene	1510331	1511080	.	-	.	ID=gene1470;Name=ssuB2;Dbxref=GeneID:5712628;gbkey=Gene;gene=ssuB2;locus_tag=Dshi_1451
NC_009952.1	RefSeq	CDS	1510331	1511080	.	-	0	ID=cds1445;Name=YP_001532794.1;Parent=gene1470;Note=Part of the ABC transporter complex ssuABC involved in aliphatic sulfonates import. Responsible for energy coupling to the transport system;Dbxref=Genbank:YP_001532794.1,GeneID:5712628;gbkey=CDS;gene=ssuB2;product=ABC transporter-like protein;protein_id=YP_001532794.1;transl_table=11
NC_009952.1	RefSeq	gene	1511077	1511940	.	-	.	ID=gene1471;Name=ssuC2;Dbxref=GeneID:5712629;gbkey=Gene;gene=ssuC2;locus_tag=Dshi_1452
NC_009952.1	RefSeq	CDS	1511077	1511940	.	-	0	ID=cds1446;Name=YP_001532795.1;Parent=gene1471;Note=Part of the ABC transporter complex ssuABC involved in aliphatic sulfonates import.;Dbxref=Genbank:YP_001532795.1,GeneID:5712629;gbkey=CDS;gene=ssuC2;product=binding-protein-dependent transport system inner membrane protein;protein_id=YP_001532795.1;transl_table=11
NC_009952.1	RefSeq	gene	1511962	1512945	.	-	.	ID=gene1472;Name=ssuA2;Dbxref=GeneID:5712630;gbkey=Gene;gene=ssuA2;locus_tag=Dshi_1453
NC_009952.1	RefSeq	CDS	1511962	1512945	.	-	0	ID=cds1447;Name=YP_001532796.1;Parent=gene1472;Note=Part of the ABC transporter complex ssuABC involved in aliphatic sulfonates import.;Dbxref=Genbank:YP_001532796.1,GeneID:5712630;gbkey=CDS;gene=ssuA2;product=putative sulfonate%2Fnitrate transport system substrate-binding protein;protein_id=YP_001532796.1;transl_table=11
NC_009952.1	RefSeq	gene	1513040	1513537	.	-	.	ID=gene1473;Name=Dshi_1454;Dbxref=GeneID:5712631;gbkey=Gene;locus_tag=Dshi_1454
NC_009952.1	RefSeq	CDS	1513040	1513537	.	-	0	ID=cds1448;Name=YP_001532797.1;Parent=gene1473;Dbxref=Genbank:YP_001532797.1,GeneID:5712631;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532797.1;transl_table=11
NC_009952.1	RefSeq	gene	1513747	1513896	.	+	.	ID=gene1474;Name=Dshi_1455;Dbxref=GeneID:5712632;gbkey=Gene;locus_tag=Dshi_1455
NC_009952.1	RefSeq	CDS	1513747	1513896	.	+	0	ID=cds1449;Name=YP_001532798.1;Parent=gene1474;Dbxref=Genbank:YP_001532798.1,GeneID:5712632;gbkey=CDS;product=transposase;protein_id=YP_001532798.1;transl_table=11
NC_009952.1	RefSeq	gene	1513896	1514609	.	+	.	ID=gene1475;Name=Dshi_1456;Dbxref=GeneID:5712633;gbkey=Gene;locus_tag=Dshi_1456
NC_009952.1	RefSeq	CDS	1513896	1514609	.	+	0	ID=cds1450;Name=YP_001532799.1;Parent=gene1475;Note=Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains.;Dbxref=Genbank:YP_001532799.1,GeneID:5712633;gbkey=CDS;product=integrase catalytic subunit;protein_id=YP_001532799.1;transl_table=11
NC_009952.1	RefSeq	gene	1514658	1516022	.	+	.	ID=gene1476;Name=Dshi_1457;Dbxref=GeneID:5712634;gbkey=Gene;locus_tag=Dshi_1457
NC_009952.1	RefSeq	CDS	1514658	1516022	.	+	0	ID=cds1451;Name=YP_001532800.1;Parent=gene1476;Note=protects the organism against invading foreign DNA%2C part of a heteromeric enzyme complex%2C mod %28modification methyltransferase%29subunit is missing;Dbxref=Genbank:YP_001532800.1,GeneID:5712634;gbkey=CDS;product=type III restriction protein res subunit;protein_id=YP_001532800.1;transl_table=11
NC_009952.1	RefSeq	gene	1515973	1516368	.	-	.	ID=gene1477;Name=Dshi_1458;Dbxref=GeneID:5712635;gbkey=Gene;locus_tag=Dshi_1458
NC_009952.1	RefSeq	CDS	1515973	1516368	.	-	0	ID=cds1452;Name=YP_001532801.1;Parent=gene1477;Note=phage integrase family;Dbxref=Genbank:YP_001532801.1,GeneID:5712635;gbkey=CDS;product=site-specific recombinase;protein_id=YP_001532801.1;transl_table=11
NC_009952.1	RefSeq	gene	1516436	1516524	.	-	.	ID=gene1478;Name=Dshi_6026;Dbxref=GeneID:5712636;gbkey=Gene;locus_tag=Dshi_6026
NC_009952.1	RefSeq	tRNA	1516436	1516524	.	-	.	ID=rna25;Parent=gene1478;Dbxref=GeneID:5712636;codons=7;gbkey=tRNA;product=tRNA-Ser
NC_009952.1	RefSeq	exon	1516436	1516524	.	-	.	ID=id29;Parent=rna25;Dbxref=GeneID:5712636;codons=7;gbkey=tRNA;product=tRNA-Ser
NC_009952.1	RefSeq	gene	1516680	1517501	.	+	.	ID=gene1479;Name=Dshi_1459;Dbxref=GeneID:5712637;gbkey=Gene;locus_tag=Dshi_1459
NC_009952.1	RefSeq	CDS	1516680	1517501	.	+	0	ID=cds1453;Name=YP_001532802.1;Parent=gene1479;Note=outer membrane protein;Dbxref=Genbank:YP_001532802.1,GeneID:5712637;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532802.1;transl_table=11
NC_009952.1	RefSeq	gene	1517692	1518357	.	+	.	ID=gene1480;Name=rplU;Dbxref=GeneID:5712638;gbkey=Gene;gene=rplU;locus_tag=Dshi_1460
NC_009952.1	RefSeq	CDS	1517692	1518357	.	+	0	ID=cds1454;Name=YP_001532803.1;Parent=gene1480;Note=fusion of ribosomal protein L21 and COG3743;Dbxref=Genbank:YP_001532803.1,GeneID:5712638;gbkey=CDS;gene=rplU;product=50S ribosomal protein L21;protein_id=YP_001532803.1;transl_table=11
NC_009952.1	RefSeq	gene	1518373	1518642	.	+	.	ID=gene1481;Name=rpmA;Dbxref=GeneID:5712639;gbkey=Gene;gene=rpmA;locus_tag=Dshi_1461
NC_009952.1	RefSeq	CDS	1518373	1518642	.	+	0	ID=cds1455;Name=YP_001532804.1;Parent=gene1481;Note=involved in the peptidyltransferase reaction during translation;Dbxref=Genbank:YP_001532804.1,GeneID:5712639;gbkey=CDS;gene=rpmA;product=50S ribosomal protein L27;protein_id=YP_001532804.1;transl_table=11
NC_009952.1	RefSeq	gene	1518721	1519377	.	+	.	ID=gene1482;Name=Dshi_1462;Dbxref=GeneID:5712640;gbkey=Gene;locus_tag=Dshi_1462
NC_009952.1	RefSeq	CDS	1518721	1519377	.	+	0	ID=cds1456;Name=YP_001532805.1;Parent=gene1482;Dbxref=Genbank:YP_001532805.1,GeneID:5712640;gbkey=CDS;product=LysE family transport protein;protein_id=YP_001532805.1;transl_table=11
NC_009952.1	RefSeq	gene	1519374	1519913	.	+	.	ID=gene1483;Name=Dshi_1463;Dbxref=GeneID:5712641;gbkey=Gene;locus_tag=Dshi_1463
NC_009952.1	RefSeq	CDS	1519374	1519913	.	+	0	ID=cds1457;Name=YP_001532806.1;Parent=gene1483;Dbxref=Genbank:YP_001532806.1,GeneID:5712641;gbkey=CDS;product=N-acetyltransferase GCN5;protein_id=YP_001532806.1;transl_table=11
NC_009952.1	RefSeq	gene	1519918	1520427	.	+	.	ID=gene1484;Name=Dshi_1464;Dbxref=GeneID:5712642;gbkey=Gene;locus_tag=Dshi_1464
NC_009952.1	RefSeq	CDS	1519918	1520427	.	+	0	ID=cds1458;Name=YP_001532807.1;Parent=gene1484;Dbxref=Genbank:YP_001532807.1,GeneID:5712642;gbkey=CDS;product=N-acetyltransferase GCN5;protein_id=YP_001532807.1;transl_table=11
NC_009952.1	RefSeq	gene	1520424	1520951	.	+	.	ID=gene1485;Name=Dshi_1465;Dbxref=GeneID:5712643;gbkey=Gene;locus_tag=Dshi_1465
NC_009952.1	RefSeq	CDS	1520424	1520951	.	+	0	ID=cds1459;Name=YP_001532808.1;Parent=gene1485;Dbxref=Genbank:YP_001532808.1,GeneID:5712643;gbkey=CDS;product=N-acetyltransferase GCN5;protein_id=YP_001532808.1;transl_table=11
NC_009952.1	RefSeq	gene	1520948	1521985	.	+	.	ID=gene1486;Name=obgE;Dbxref=GeneID:5712644;gbkey=Gene;gene=obgE;locus_tag=Dshi_1466
NC_009952.1	RefSeq	CDS	1520948	1521985	.	+	0	ID=cds1460;Name=YP_001532809.1;Parent=gene1486;Note=essential GTPase%3B exhibits high exchange rate for GTP%2FGDP%3B associates with 50S ribosomal subunit%3B involved in regulation of chromosomal replication;Dbxref=Genbank:YP_001532809.1,GeneID:5712644;gbkey=CDS;gene=obgE;product=GTPase ObgE;protein_id=YP_001532809.1;transl_table=11
NC_009952.1	RefSeq	gene	1521973	1523079	.	+	.	ID=gene1487;Name=proB;Dbxref=GeneID:5712645;gbkey=Gene;gene=proB;locus_tag=Dshi_1467
NC_009952.1	RefSeq	CDS	1521973	1523079	.	+	0	ID=cds1461;Name=YP_001532810.1;Parent=gene1487;Note=catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis;Dbxref=Genbank:YP_001532810.1,GeneID:5712645;gbkey=CDS;gene=proB;product=gamma-glutamyl kinase;protein_id=YP_001532810.1;transl_table=11
NC_009952.1	RefSeq	gene	1523177	1523812	.	+	.	ID=gene1488;Name=Dshi_1468;Dbxref=GeneID:5712646;gbkey=Gene;locus_tag=Dshi_1468
NC_009952.1	RefSeq	CDS	1523177	1523812	.	+	0	ID=cds1462;Name=YP_001532811.1;Parent=gene1488;Dbxref=Genbank:YP_001532811.1,GeneID:5712646;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532811.1;transl_table=11
NC_009952.1	RefSeq	gene	1523915	1525180	.	+	.	ID=gene1489;Name=proA;Dbxref=GeneID:5712647;gbkey=Gene;gene=proA;locus_tag=Dshi_1469
NC_009952.1	RefSeq	CDS	1523915	1525180	.	+	0	ID=cds1463;Name=YP_001532812.1;Parent=gene1489;Note=Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway;Dbxref=Genbank:YP_001532812.1,GeneID:5712647;gbkey=CDS;gene=proA;product=gamma-glutamyl phosphate reductase;protein_id=YP_001532812.1;transl_table=11
NC_009952.1	RefSeq	gene	1525195	1525809	.	-	.	ID=gene1490;Name=Dshi_1470;Dbxref=GeneID:5712648;gbkey=Gene;locus_tag=Dshi_1470
NC_009952.1	RefSeq	CDS	1525195	1525809	.	-	0	ID=cds1464;Name=YP_001532813.1;Parent=gene1490;Dbxref=Genbank:YP_001532813.1,GeneID:5712648;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532813.1;transl_table=11
NC_009952.1	RefSeq	gene	1525839	1526024	.	+	.	ID=gene1491;Name=Dshi_1471;Dbxref=GeneID:5712649;gbkey=Gene;locus_tag=Dshi_1471
NC_009952.1	RefSeq	CDS	1525839	1526024	.	+	0	ID=cds1465;Name=YP_001532814.1;Parent=gene1491;Dbxref=Genbank:YP_001532814.1,GeneID:5712649;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532814.1;transl_table=11
NC_009952.1	RefSeq	gene	1526145	1526921	.	+	.	ID=gene1492;Name=Dshi_1472;Dbxref=GeneID:5712650;gbkey=Gene;locus_tag=Dshi_1472
NC_009952.1	RefSeq	CDS	1526145	1526921	.	+	0	ID=cds1466;Name=YP_001532815.1;Parent=gene1492;Note=similar to ornithine acyl%5Bacyl carrier protein%5D N-acyltransferase in S. pomeroyi;Dbxref=Genbank:YP_001532815.1,GeneID:5712650;gbkey=CDS;product=phospholipid%2Fglycerol acyltransferase;protein_id=YP_001532815.1;transl_table=11
NC_009952.1	RefSeq	gene	1526918	1527763	.	+	.	ID=gene1493;Name=Dshi_1473;Dbxref=GeneID:5712651;gbkey=Gene;locus_tag=Dshi_1473
NC_009952.1	RefSeq	CDS	1526918	1527763	.	+	0	ID=cds1467;Name=YP_001532816.1;Parent=gene1493;Note=Glycerophospholipid metabolism;Dbxref=Genbank:YP_001532816.1,GeneID:5712651;gbkey=CDS;product=phospholipid%2Fglycerol acyltransferase;protein_id=YP_001532816.1;transl_table=11
NC_009952.1	RefSeq	gene	1527727	1528590	.	-	.	ID=gene1494;Name=Dshi_1474;Dbxref=GeneID:5712652;gbkey=Gene;locus_tag=Dshi_1474
NC_009952.1	RefSeq	CDS	1527727	1528590	.	-	0	ID=cds1468;Name=YP_001532817.1;Parent=gene1494;Note=similar to Glutamyl-Q tRNA%28Asp%29 synthetase which catalyzes the tRNA-independent activation of glutamate in presence of ATP and the subsequent transfer of glutamate onto a tRNA%28Asp%29.;Dbxref=Genbank:YP_001532817.1,GeneID:5712652;gbkey=CDS;product=glutamyl-tRNA synthetase;protein_id=YP_001532817.1;transl_table=11
NC_009952.1	RefSeq	gene	1528630	1529985	.	-	.	ID=gene1495;Name=gid;Dbxref=GeneID:5712653;gbkey=Gene;gene=gid;locus_tag=Dshi_1475
NC_009952.1	RefSeq	CDS	1528630	1529985	.	-	0	ID=cds1469;Name=YP_001532818.1;Parent=gene1495;Note=TrmFO%3B Gid%3B glucose-inhibited division protein%3B similar to GidA%3B the gene from Bacillus subtilis encodes a tRNA-methyltransferase that utilizes folate as the carbon donor and bound flavin as reductant%3B modifies tRNA at position 54 %28uridine%29 of the T-psi loop to form a C5-methyluridine;Dbxref=Genbank:YP_001532818.1,GeneID:5712653;gbkey=CDS;gene=gid;product=tRNA %28uracil-5-%29-methyltransferase Gid;protein_id=YP_001532818.1;transl_table=11
NC_009952.1	RefSeq	gene	1530153	1532894	.	-	.	ID=gene1496;Name=gyrA;Dbxref=GeneID:5712654;gbkey=Gene;gene=gyrA;locus_tag=Dshi_1476
NC_009952.1	RefSeq	CDS	1530153	1532894	.	-	0	ID=cds1470;Name=YP_001532819.1;Parent=gene1496;Note=negatively supercoils closed circular double-stranded DNA;Dbxref=Genbank:YP_001532819.1,GeneID:5712654;gbkey=CDS;gene=gyrA;product=DNA gyrase subunit A;protein_id=YP_001532819.1;transl_table=11
NC_009952.1	RefSeq	gene	1533086	1533355	.	+	.	ID=gene1497;Name=Dshi_1477;Dbxref=GeneID:5712655;gbkey=Gene;locus_tag=Dshi_1477
NC_009952.1	RefSeq	CDS	1533086	1533355	.	+	0	ID=cds1471;Name=YP_001532820.1;Parent=gene1497;Note=not in the trp operon%2C Usg is normally found in trpF%2C trpB%2C and trpA context;Dbxref=Genbank:YP_001532820.1,GeneID:5712655;gbkey=CDS;product=Usg family protein;protein_id=YP_001532820.1;transl_table=11
NC_009952.1	RefSeq	gene	1533483	1533950	.	-	.	ID=gene1498;Name=Dshi_1478;Dbxref=GeneID:5712656;gbkey=Gene;locus_tag=Dshi_1478
NC_009952.1	RefSeq	CDS	1533483	1533950	.	-	0	ID=cds1472;Name=YP_001532821.1;Parent=gene1498;Note=The DsbB protein oxidises the periplasmic protein DsbA which in turn oxidises cysteines in other periplasmic proteins in order to make disulfide bonds;Dbxref=Genbank:YP_001532821.1,GeneID:5712656;gbkey=CDS;product=disulfide bond formation protein DsbB;protein_id=YP_001532821.1;transl_table=11
NC_009952.1	RefSeq	gene	1534029	1534640	.	-	.	ID=gene1499;Name=Dshi_1479;Dbxref=GeneID:5712657;gbkey=Gene;locus_tag=Dshi_1479
NC_009952.1	RefSeq	CDS	1534029	1534640	.	-	0	ID=cds1473;Name=YP_001532822.1;Parent=gene1499;Note=the exo genes are involved in exopolysaccharide biosynthesis%2C exoD of Rhizobium meliloti encodes a function needed for alfalfa nodule invasion;Dbxref=Genbank:YP_001532822.1,GeneID:5712657;gbkey=CDS;product=exopolysaccharide synthesis ExoD;protein_id=YP_001532822.1;transl_table=11
NC_009952.1	RefSeq	gene	1535034	1536077	.	+	.	ID=gene1500;Name=Dshi_1480;Dbxref=GeneID:5712658;gbkey=Gene;locus_tag=Dshi_1480
NC_009952.1	RefSeq	CDS	1535034	1536077	.	+	0	ID=cds1474;Name=YP_001532823.1;Parent=gene1500;Note=TRAP gene cluster - dctPQM;Dbxref=Genbank:YP_001532823.1,GeneID:5712658;gbkey=CDS;product=TRAP dicarboxylate transporter subunit DctP;protein_id=YP_001532823.1;transl_table=11
NC_009952.1	RefSeq	gene	1536263	1536844	.	+	.	ID=gene1501;Name=Dshi_1481;Dbxref=GeneID:5712659;gbkey=Gene;locus_tag=Dshi_1481
NC_009952.1	RefSeq	CDS	1536263	1536844	.	+	0	ID=cds1475;Name=YP_001532824.1;Parent=gene1501;Note=TRAP gene cluster - dctPQM;Dbxref=Genbank:YP_001532824.1,GeneID:5712659;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532824.1;transl_table=11
NC_009952.1	RefSeq	gene	1536841	1538193	.	+	.	ID=gene1502;Name=Dshi_1482;Dbxref=GeneID:5712660;gbkey=Gene;locus_tag=Dshi_1482
NC_009952.1	RefSeq	CDS	1536841	1538193	.	+	0	ID=cds1476;Name=YP_001532825.1;Parent=gene1502;Note=TRAP gene cluster - dctPQM%3B DctM subunit;Dbxref=Genbank:YP_001532825.1,GeneID:5712660;gbkey=CDS;product=TRAP dicarboxylate transporter;protein_id=YP_001532825.1;transl_table=11
NC_009952.1	RefSeq	gene	1538245	1538331	.	+	.	ID=gene1503;Name=Dshi_6027;Dbxref=GeneID:5712661;gbkey=Gene;locus_tag=Dshi_6027
NC_009952.1	RefSeq	tRNA	1538245	1538331	.	+	.	ID=rna26;Parent=gene1503;Dbxref=GeneID:5712661;codons=3;gbkey=tRNA;product=tRNA-Leu
NC_009952.1	RefSeq	exon	1538245	1538331	.	+	.	ID=id30;Parent=rna26;Dbxref=GeneID:5712661;codons=3;gbkey=tRNA;product=tRNA-Leu
NC_009952.1	RefSeq	gene	1538375	1538743	.	-	.	ID=gene1504;Name=Dshi_1483;Dbxref=GeneID:5712662;gbkey=Gene;locus_tag=Dshi_1483
NC_009952.1	RefSeq	CDS	1538375	1538743	.	-	0	ID=cds1477;Name=YP_001532826.1;Parent=gene1504;Dbxref=Genbank:YP_001532826.1,GeneID:5712662;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532826.1;transl_table=11
NC_009952.1	RefSeq	gene	1538907	1539512	.	-	.	ID=gene1505;Name=Dshi_1484;Dbxref=GeneID:5712663;gbkey=Gene;locus_tag=Dshi_1484
NC_009952.1	RefSeq	CDS	1538907	1539512	.	-	0	ID=cds1478;Name=YP_001532827.1;Parent=gene1505;Dbxref=Genbank:YP_001532827.1,GeneID:5712663;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532827.1;transl_table=11
NC_009952.1	RefSeq	gene	1539700	1542114	.	-	.	ID=gene1506;Name=Dshi_1485;Dbxref=GeneID:5712664;gbkey=Gene;locus_tag=Dshi_1485
NC_009952.1	RefSeq	CDS	1539700	1542114	.	-	0	ID=cds1479;Name=YP_001532828.1;Parent=gene1506;Note=DOMAINS: FAD dependent oxidoreductase%2C Glycine cleavage T-protein%2C involved in amine and polyamine degradation;Dbxref=Genbank:YP_001532828.1,GeneID:5712664;gbkey=CDS;product=FAD dependent oxidoreductase;protein_id=YP_001532828.1;transl_table=11
NC_009952.1	RefSeq	gene	1542296	1544161	.	-	.	ID=gene1507;Name=Dshi_1486;Dbxref=GeneID:5712665;gbkey=Gene;locus_tag=Dshi_1486
NC_009952.1	RefSeq	CDS	1542296	1544161	.	-	0	ID=cds1480;Name=YP_001532829.1;Parent=gene1507;Note=Betaine %2F Carnitine %2F Choline Transporter%2C The BCCT proteins contain 12 transmembrane regions and are energized by proton symport;Dbxref=Genbank:YP_001532829.1,GeneID:5712665;gbkey=CDS;product=BCCT transporter;protein_id=YP_001532829.1;transl_table=11
NC_009952.1	RefSeq	gene	1544432	1546513	.	-	.	ID=gene1508;Name=Dshi_1487;Dbxref=GeneID:5712666;gbkey=Gene;locus_tag=Dshi_1487
NC_009952.1	RefSeq	CDS	1544432	1546513	.	-	0	ID=cds1481;Name=YP_001532830.1;Parent=gene1508;Note=ABC transporter %28importer%29 gene cluster: 2 fused ATPase%2F Oligopeptide%2Fdipeptide transporter%2C C-terminal region domains%3B ATPase subunit;Dbxref=Genbank:YP_001532830.1,GeneID:5712666;gbkey=CDS;product=oligopeptide%2Fdipeptide ABC transporter;protein_id=YP_001532830.1;transl_table=11
NC_009952.1	RefSeq	gene	1546583	1547743	.	-	.	ID=gene1509;Name=Dshi_1488;Dbxref=GeneID:5712667;gbkey=Gene;locus_tag=Dshi_1488
NC_009952.1	RefSeq	CDS	1546583	1547743	.	-	0	ID=cds1482;Name=YP_001532831.1;Parent=gene1509;Note=ABC transporter %28importer%29 gene cluster: 2nd membrane spanning domain %28MSD%29%3B part of a heterotetramer;Dbxref=Genbank:YP_001532831.1,GeneID:5712667;gbkey=CDS;product=binding-protein-dependent transport system inner membrane protein;protein_id=YP_001532831.1;transl_table=11
NC_009952.1	RefSeq	gene	1547754	1548845	.	-	.	ID=gene1510;Name=Dshi_1489;Dbxref=GeneID:5712668;gbkey=Gene;locus_tag=Dshi_1489
NC_009952.1	RefSeq	CDS	1547754	1548845	.	-	0	ID=cds1483;Name=YP_001532832.1;Parent=gene1510;Note=ABC transporter %28importer%29 gene cluster: 1st membrane spanning domain %28MSD%29%3B part of a heterotetramer;Dbxref=Genbank:YP_001532832.1,GeneID:5712668;gbkey=CDS;product=binding-protein-dependent transport system inner membrane protein;protein_id=YP_001532832.1;transl_table=11
NC_009952.1	RefSeq	gene	1548941	1550608	.	-	.	ID=gene1511;Name=Dshi_1490;Dbxref=GeneID:5712669;gbkey=Gene;locus_tag=Dshi_1490
NC_009952.1	RefSeq	CDS	1548941	1550608	.	-	0	ID=cds1484;Name=YP_001532833.1;Parent=gene1511;Note=ABC transporter %28importer%29 gene cluster: receptor;Dbxref=Genbank:YP_001532833.1,GeneID:5712669;gbkey=CDS;product=family 5 extracellular solute-binding protein;protein_id=YP_001532833.1;transl_table=11
NC_009952.1	RefSeq	gene	1550866	1551678	.	-	.	ID=gene1512;Name=Dshi_1491;Dbxref=GeneID:5712670;gbkey=Gene;locus_tag=Dshi_1491
NC_009952.1	RefSeq	CDS	1550866	1551678	.	-	0	ID=cds1485;Name=YP_001532834.1;Parent=gene1512;Note=only 1 DNA-binding domain%2C no substrate binding domain%3B AraC family;Dbxref=Genbank:YP_001532834.1,GeneID:5712670;gbkey=CDS;product=transcriptional regulator;protein_id=YP_001532834.1;transl_table=11
NC_009952.1	RefSeq	gene	1551737	1552627	.	-	.	ID=gene1513;Name=miaA;Dbxref=GeneID:5712671;gbkey=Gene;gene=miaA;locus_tag=Dshi_1492
NC_009952.1	RefSeq	CDS	1551737	1552627	.	-	0	ID=cds1486;Name=YP_001532835.1;Parent=gene1513;Note=IPP transferase%3B isopentenyltransferase%3B involved in tRNA modification%3B in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil%3B further tRNA modifications may occur%3B mutations in miaA result in defects in translation efficiency and fidelity;Dbxref=Genbank:YP_001532835.1,GeneID:5712671;gbkey=CDS;gene=miaA;product=tRNA delta%282%29-isopentenylpyrophosphate transferase;protein_id=YP_001532835.1;transl_table=11
NC_009952.1	RefSeq	gene	1552737	1553468	.	+	.	ID=gene1514;Name=pyrH;Dbxref=GeneID:5712672;gbkey=Gene;gene=pyrH;locus_tag=Dshi_1493
NC_009952.1	RefSeq	CDS	1552737	1553468	.	+	0	ID=cds1487;Name=YP_001532836.1;Parent=gene1514;Note=Catalyzes the phosphorylation of UMP to UDP;Dbxref=Genbank:YP_001532836.1,GeneID:5712672;gbkey=CDS;gene=pyrH;product=uridylate kinase;protein_id=YP_001532836.1;transl_table=11
NC_009952.1	RefSeq	gene	1553599	1554165	.	+	.	ID=gene1515;Name=frr;Dbxref=GeneID:5712673;gbkey=Gene;gene=frr;locus_tag=Dshi_1494
NC_009952.1	RefSeq	CDS	1553599	1554165	.	+	0	ID=cds1488;Name=YP_001532837.1;Parent=gene1515;Note=Rrf%3B Frr%3B ribosome-recycling factor%3B release factor 4%3B RF4%3B recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G%3B A GTPase-dependent process results in release of 50S from 70S%3B inhibited by release factor RF-1%3B essential for viability%3B structurally similar to tRNAs;Dbxref=Genbank:YP_001532837.1,GeneID:5712673;gbkey=CDS;gene=frr;product=ribosome recycling factor;protein_id=YP_001532837.1;transl_table=11
NC_009952.1	RefSeq	gene	1554231	1554962	.	+	.	ID=gene1516;Name=uppS;Dbxref=GeneID:5712674;gbkey=Gene;gene=uppS;locus_tag=Dshi_1495
NC_009952.1	RefSeq	CDS	1554231	1554962	.	+	0	ID=cds1489;Name=YP_001532838.1;Parent=gene1516;Note=Generates undecaprenyl pyrophosphate %28UPP%29 from isopentenyl pyrophosphate %28IPP%29. UPP is the precursor of glycosyl carrier lipid in the biosynthesis of bacterial cell wall polysaccharide components such as peptidoglycan and lipopolysaccharide;Dbxref=Genbank:YP_001532838.1,GeneID:5712674;gbkey=CDS;gene=uppS;product=undecaprenyl diphosphate synthase;protein_id=YP_001532838.1;transl_table=11
NC_009952.1	RefSeq	gene	1554983	1555774	.	+	.	ID=gene1517;Name=cdsA1;Dbxref=GeneID:5712675;gbkey=Gene;gene=cdsA1;locus_tag=Dshi_1496
NC_009952.1	RefSeq	CDS	1554983	1555774	.	+	0	ID=cds1490;Name=YP_001532839.1;Parent=gene1517;Note=catalyzes the synthesis of CDP-diacylglycerol from CTP and phosphatidate %28PA%29: CDP-diacylglycerol is an important branch point intermediate in both prokaryotic and eukaryotic organisms.;Dbxref=Genbank:YP_001532839.1,GeneID:5712675;gbkey=CDS;gene=cdsA1;product=phosphatidate cytidylyltransferase;protein_id=YP_001532839.1;transl_table=11
NC_009952.1	RefSeq	gene	1555798	1556979	.	+	.	ID=gene1518;Name=dxr;Dbxref=GeneID:5712676;gbkey=Gene;gene=dxr;locus_tag=Dshi_1497
NC_009952.1	RefSeq	CDS	1555798	1556979	.	+	0	ID=cds1491;Name=YP_001532840.1;Parent=gene1518;Note=catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate %28DXP%29 to 2-C-methyl-D-erythritol 4-phosphate;Dbxref=Genbank:YP_001532840.1,GeneID:5712676;gbkey=CDS;gene=dxr;product=1-deoxy-D-xylulose 5-phosphate reductoisomerase;protein_id=YP_001532840.1;transl_table=11
NC_009952.1	RefSeq	gene	1557041	1558378	.	+	.	ID=gene1519;Name=ecfE;Dbxref=GeneID:5712677;gbkey=Gene;gene=ecfE;locus_tag=Dshi_1498
NC_009952.1	RefSeq	CDS	1557041	1558378	.	+	0	ID=cds1492;Name=YP_001532841.1;Parent=gene1519;Note=Zinc-Metalloprotease%3B Degrades both heat shock sigma factors rpoE and rpoH.;Dbxref=Genbank:YP_001532841.1,GeneID:5712677;gbkey=CDS;gene=ecfE;product=putative membrane-associated zinc metalloprotease;protein_id=YP_001532841.1;transl_table=11
NC_009952.1	RefSeq	gene	1558817	1561063	.	+	.	ID=gene1520;Name=yaeT;Dbxref=GeneID:5712678;gbkey=Gene;gene=yaeT;locus_tag=Dshi_1499
NC_009952.1	RefSeq	CDS	1558817	1561063	.	+	0	ID=cds1493;Name=YP_001532842.1;Parent=gene1520;Note=involved in the assembly of proteins into the outer membrane of Gram-negative bacteria;Dbxref=Genbank:YP_001532842.1,GeneID:5712678;gbkey=CDS;gene=yaeT;product=hypothetical protein;protein_id=YP_001532842.1;transl_table=11
NC_009952.1	RefSeq	gene	1561065	1561640	.	+	.	ID=gene1521;Name=Dshi_1500;Dbxref=GeneID:5712679;gbkey=Gene;locus_tag=Dshi_1500
NC_009952.1	RefSeq	CDS	1561065	1561640	.	+	0	ID=cds1494;Name=YP_001532843.1;Parent=gene1521;Note=Skp %28OmpH%29 has been characterised as a molecular chaperone that interacts with unfolded proteins as they emerge in the periplasm from the Sec translocation machinery;Dbxref=Genbank:YP_001532843.1,GeneID:5712679;gbkey=CDS;product=outer membrane chaperone Skp;protein_id=YP_001532843.1;transl_table=11
NC_009952.1	RefSeq	gene	1561725	1562216	.	+	.	ID=gene1522;Name=fabZ;Dbxref=GeneID:5712680;gbkey=Gene;gene=fabZ;locus_tag=Dshi_1501
NC_009952.1	RefSeq	CDS	1561725	1562216	.	+	0	ID=cds1495;Name=YP_001532844.1;Parent=gene1522;Note=in Pseudomonas aeruginosa this enzyme is a trimer of dimers%3B essential for membrane formation%3B performs third step of type II fatty acid biosynthesis%3B catalyzes dehydration of %283R%29-hydroxyacyl-ACP to trans-2-acyl-ACP;Dbxref=Genbank:YP_001532844.1,GeneID:5712680;gbkey=CDS;gene=fabZ;product=%283R%29-hydroxymyristoyl-ACP dehydratase;protein_id=YP_001532844.1;transl_table=11
NC_009952.1	RefSeq	gene	1562213	1563013	.	+	.	ID=gene1523;Name=lpxA;Dbxref=GeneID:5712681;gbkey=Gene;gene=lpxA;locus_tag=Dshi_1502
NC_009952.1	RefSeq	CDS	1562213	1563013	.	+	0	ID=cds1496;Name=YP_001532845.1;Parent=gene1523;Note=catalyzes the addition of %28R%29-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis;Dbxref=Genbank:YP_001532845.1,GeneID:5712681;gbkey=CDS;gene=lpxA;product=UDP-N-acetylglucosamine acyltransferase;protein_id=YP_001532845.1;transl_table=11
NC_009952.1	RefSeq	gene	1563017	1563814	.	+	.	ID=gene1524;Name=Dshi_1503;Dbxref=GeneID:5712682;gbkey=Gene;locus_tag=Dshi_1503
NC_009952.1	RefSeq	CDS	1563017	1563814	.	+	0	ID=cds1497;Name=YP_001532846.1;Parent=gene1524;Note=COG: COG3494 - Uncharacterized protein conserved in bacteria%2C PFAM: pfam06230 Protein of unknown function %28DUF1009%29;Dbxref=Genbank:YP_001532846.1,GeneID:5712682;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532846.1;transl_table=11
NC_009952.1	RefSeq	gene	1563814	1564956	.	+	.	ID=gene1525;Name=lpxB;Dbxref=GeneID:5712683;gbkey=Gene;gene=lpxB;locus_tag=Dshi_1504
NC_009952.1	RefSeq	CDS	1563814	1564956	.	+	0	ID=cds1498;Name=YP_001532847.1;Parent=gene1525;Note=TIGRFAM: TIGR00215 lipid-A-disaccharide synthase%2C COG: COG0763 - Lipid A disaccharide synthetase%2C PFAM: LpxB%2C pfam02684 Lipid-A-disaccharide synthetase%2C KEGG Pathway: Lipopolysaccharide biosynthesis;Dbxref=Genbank:YP_001532847.1,GeneID:5712683;gbkey=CDS;gene=lpxB;product=lipid-A-disaccharide synthase;protein_id=YP_001532847.1;transl_table=11
NC_009952.1	RefSeq	gene	1564953	1566149	.	-	.	ID=gene1526;Name=lpxB;Dbxref=GeneID:5712684;gbkey=Gene;gene=lpxB;locus_tag=Dshi_1505
NC_009952.1	RefSeq	CDS	1564953	1566149	.	-	0	ID=cds1499;Name=YP_001532848.1;Parent=gene1526;Note=SUPERFAMILY: SSF51294;Dbxref=Genbank:YP_001532848.1,GeneID:5712684;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532848.1;transl_table=11
NC_009952.1	RefSeq	gene	1566319	1567473	.	-	.	ID=gene1527;Name=mnmA;Dbxref=GeneID:5712685;gbkey=Gene;gene=mnmA;locus_tag=Dshi_1506
NC_009952.1	RefSeq	CDS	1566319	1567473	.	-	0	ID=cds1500;Name=YP_001532849.1;Parent=gene1527;Note=catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs;Dbxref=Genbank:YP_001532849.1,GeneID:5712685;gbkey=CDS;gene=mnmA;product=tRNA-specific 2-thiouridylase MnmA;protein_id=YP_001532849.1;transl_table=11
NC_009952.1	RefSeq	gene	1567599	1567877	.	+	.	ID=gene1528;Name=Dshi_1507;Dbxref=GeneID:5712686;gbkey=Gene;locus_tag=Dshi_1507
NC_009952.1	RefSeq	CDS	1567599	1567877	.	+	0	ID=cds1501;Name=YP_001532850.1;Parent=gene1528;Note=PFAM: PF06627%3B related to DUF1153;Dbxref=Genbank:YP_001532850.1,GeneID:5712686;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532850.1;transl_table=11
NC_009952.1	RefSeq	gene	1567977	1568690	.	+	.	ID=gene1529;Name=ctrA;Dbxref=GeneID:5712687;gbkey=Gene;gene=ctrA;locus_tag=Dshi_1508
NC_009952.1	RefSeq	CDS	1567977	1568690	.	+	0	ID=cds1502;Name=YP_001532851.1;Parent=gene1529;Note=SWISSPROT Q45994: Cell cycle transcriptional regulator%3B PRODOM: PD000039%2C PD000329%3B PFAM: PF00486%2C PF00072%3B SMART: SM00448%2C PROFILE: PS50110%3B SUPERFAMILY: SSF52172%2C COG: COG0745 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain%3B Response regulator sokA;Dbxref=Genbank:YP_001532851.1,GeneID:5712687;gbkey=CDS;gene=ctrA;product=cell cycle transcriptional regulator ctrA;protein_id=YP_001532851.1;transl_table=11
NC_009952.1	RefSeq	gene	1568730	1570955	.	+	.	ID=gene1530;Name=ligA;Dbxref=GeneID:5712688;gbkey=Gene;gene=ligA;locus_tag=Dshi_1509
NC_009952.1	RefSeq	CDS	1568730	1570955	.	+	0	ID=cds1503;Name=YP_001532852.1;Parent=gene1530;Note=SWISSPROT P15042: DNA ligase%3B PFAM: pfam01653%2C pfam03120%2C pfam00533%2C pfam03119%3B COG: COG0272 - NAD-dependent DNA ligase %28contains BRCT domain type II%29%2C TIGRFAM: TIGR00575 DNA ligase%2C NAD-dependent%3B NAD-dependent;Dbxref=Genbank:YP_001532852.1,GeneID:5712688;gbkey=CDS;gene=ligA;product=DNA ligase;protein_id=YP_001532852.1;transl_table=11
NC_009952.1	RefSeq	gene	1570952	1573042	.	+	.	ID=gene1531;Name=recG;Dbxref=GeneID:5712689;gbkey=Gene;gene=recG;locus_tag=Dshi_1510
NC_009952.1	RefSeq	CDS	1570952	1573042	.	+	0	ID=cds1504;Name=YP_001532853.1;Parent=gene1531;Note=catalyzes branch migration in Holliday junction intermediates;Dbxref=Genbank:YP_001532853.1,GeneID:5712689;gbkey=CDS;gene=recG;product=ATP-dependent DNA helicase RecG;protein_id=YP_001532853.1;transl_table=11
NC_009952.1	RefSeq	gene	1573442	1574914	.	-	.	ID=gene1532;Name=Dshi_1511;Dbxref=GeneID:5712690;gbkey=Gene;locus_tag=Dshi_1511
NC_009952.1	RefSeq	CDS	1573442	1574914	.	-	0	ID=cds1505;Name=YP_001532854.1;Parent=gene1532;Note=SWISSPROT P42663: Thermostable carboxypeptidase 1%3B PFAM: pfam02074%3B COG: COG2317 - Zn-dependent carboxypeptidase;Dbxref=Genbank:YP_001532854.1,GeneID:5712690;gbkey=CDS;product=carboxypeptidase Taq;protein_id=YP_001532854.1;transl_table=11
NC_009952.1	RefSeq	gene	1574911	1576062	.	-	.	ID=gene1533;Name=Dshi_1512;Dbxref=GeneID:5713169;gbkey=Gene;locus_tag=Dshi_1512
NC_009952.1	RefSeq	CDS	1574911	1576062	.	-	0	ID=cds1506;Name=YP_001532855.1;Parent=gene1533;Note=PFAM: pfam02628%3B COG: COG1612 - Uncharacterized protein required for cytochrome oxidase assembly;Dbxref=Genbank:YP_001532855.1,GeneID:5713169;gbkey=CDS;product=putative cytochrome oxidase assembly protein;protein_id=YP_001532855.1;transl_table=11
NC_009952.1	RefSeq	gene	1576115	1576882	.	-	.	ID=gene1534;Name=Dshi_1513;Dbxref=GeneID:5713170;gbkey=Gene;locus_tag=Dshi_1513
NC_009952.1	RefSeq	CDS	1576115	1576882	.	-	0	ID=cds1507;Name=YP_001532856.1;Parent=gene1534;Note=PFAM: pfam00588%3B COG: COG0565 - rRNA methylase%3B TIGRFAM: TIGR00050 rRNA methylase%2C putative%2C group 1%3B SpoU family;Dbxref=Genbank:YP_001532856.1,GeneID:5713170;gbkey=CDS;product=putative tRNA%2FrRNA methyltransferase;protein_id=YP_001532856.1;transl_table=11
NC_009952.1	RefSeq	gene	1576962	1577585	.	+	.	ID=gene1535;Name=Dshi_1514;Dbxref=GeneID:5713171;gbkey=Gene;locus_tag=Dshi_1514
NC_009952.1	RefSeq	CDS	1576962	1577585	.	+	0	ID=cds1508;Name=YP_001532857.1;Parent=gene1535;Note=PFAM: pfam02581%3B COG: COG0352 Thiamine monophosphate synthase%3B TIGRFAM: TIGR00693 thiamine-phosphate pyrophosphorylase;Dbxref=Genbank:YP_001532857.1,GeneID:5713171;gbkey=CDS;product=putative thiamine monophosphate synthase;protein_id=YP_001532857.1;transl_table=11
NC_009952.1	RefSeq	gene	1577589	1577948	.	-	.	ID=gene1536;Name=hisI;Dbxref=GeneID:5713172;gbkey=Gene;gene=hisI;locus_tag=Dshi_1515
NC_009952.1	RefSeq	CDS	1577589	1577948	.	-	0	ID=cds1509;Name=YP_001532858.1;Parent=gene1536;Note=SWISSPROT Q53158: Phosphoribosyl-AMP cyclohydrolase%3B PFAM: pfam01502%2C COG: COG0139 - Phosphoribosyl-AMP cyclohydrolase;Dbxref=Genbank:YP_001532858.1,GeneID:5713172;gbkey=CDS;gene=hisI;product=phosphoribosyl-AMP cyclohydrolase;protein_id=YP_001532858.1;transl_table=11
NC_009952.1	RefSeq	gene	1578009	1578458	.	+	.	ID=gene1537;Name=Dshi_1516;Dbxref=GeneID:5713173;gbkey=Gene;locus_tag=Dshi_1516
NC_009952.1	RefSeq	CDS	1578009	1578458	.	+	0	ID=cds1510;Name=YP_001532859.1;Parent=gene1537;Note=PFAM: PF01592%2C COG: COG0822 - NifU homolog involved in Fe-S cluster formation.%3B related to NIFU;Dbxref=Genbank:YP_001532859.1,GeneID:5713173;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532859.1;transl_table=11
NC_009952.1	RefSeq	gene	1578568	1579872	.	-	.	ID=gene1538;Name=Dshi_1517;Dbxref=GeneID:5713174;gbkey=Gene;locus_tag=Dshi_1517
NC_009952.1	RefSeq	CDS	1578568	1579872	.	-	0	ID=cds1511;Name=YP_001532860.1;Parent=gene1538;Note=PFAM: pfam02653%2C COG: COG4177- ABC-type branched-chain amino acid transport system %2F permease component%3B related to amino acid %2F sugar transport system;Dbxref=Genbank:YP_001532860.1,GeneID:5713174;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532860.1;transl_table=11
NC_009952.1	RefSeq	gene	1579869	1580879	.	-	.	ID=gene1539;Name=Dshi_1518;Dbxref=GeneID:5713175;gbkey=Gene;locus_tag=Dshi_1518
NC_009952.1	RefSeq	CDS	1579869	1580879	.	-	0	ID=cds1512;Name=YP_001532861.1;Parent=gene1539;Note=PFAM: pfam02653%2C COG: COG0559- Branched-chain amino acid ABC-type transport system%2C permease components%3B similar to branched -chain amino acid transporter%2C permease subunit;Dbxref=Genbank:YP_001532861.1,GeneID:5713175;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532861.1;transl_table=11
NC_009952.1	RefSeq	gene	1580879	1581238	.	-	.	ID=gene1540;Name=Dshi_1519;Dbxref=GeneID:5713176;gbkey=Gene;locus_tag=Dshi_1519
NC_009952.1	RefSeq	CDS	1580879	1581238	.	-	0	ID=cds1513;Name=YP_001532862.1;Parent=gene1540;Note=associated with ABC-transport system cluster;Dbxref=Genbank:YP_001532862.1,GeneID:5713176;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532862.1;transl_table=11
NC_009952.1	RefSeq	gene	1581242	1582075	.	-	.	ID=gene1541;Name=livF2;Dbxref=GeneID:5713177;gbkey=Gene;gene=livF2;locus_tag=Dshi_1520
NC_009952.1	RefSeq	CDS	1581242	1582075	.	-	0	ID=cds1514;Name=YP_001532863.1;Parent=gene1541;Note=SWISSPROT P22731: High-affinity branched-chain amino acid transport ATP-binding protein livF%3B PFAM: PF00005%3B PROSITE: PS50893%3B SMART: SM00382%3B COG: COG0410 -ABC-type branched-chain amino acid transport systems%2C ATPase component.;Dbxref=Genbank:YP_001532863.1,GeneID:5713177;gbkey=CDS;gene=livF2;product=high-affinity branched-chain amino acid transport ATP-binding protein;protein_id=YP_001532863.1;transl_table=11
NC_009952.1	RefSeq	gene	1582072	1582854	.	-	.	ID=gene1542;Name=livF2;Dbxref=GeneID:5713178;gbkey=Gene;gene=livF2;locus_tag=Dshi_1521
NC_009952.1	RefSeq	CDS	1582072	1582854	.	-	0	ID=cds1515;Name=YP_001532864.1;Parent=gene1542;Note=SWISSPROT P0A9S7: High-affinity branched-chain amino acid transport ATP-binding protein livG%3B PFAM: PF00005%3B PROSITE: PS00211%2C PS50893%3B SMART: SM00382%3B COG: COG0411 - ABC-type branched-chain amino acid transport systems%2C ATPase component%3B livG;Dbxref=Genbank:YP_001532864.1,GeneID:5713178;gbkey=CDS;product=putative high-affinity branched-chain amino acid transport ATP-binding protein;protein_id=YP_001532864.1;transl_table=11
NC_009952.1	RefSeq	gene	1582914	1584101	.	-	.	ID=gene1543;Name=Dshi_1522;Dbxref=GeneID:5713179;gbkey=Gene;locus_tag=Dshi_1522
NC_009952.1	RefSeq	CDS	1582914	1584101	.	-	0	ID=cds1516;Name=YP_001532865.1;Parent=gene1543;Note=PFAM: pfam01094%2C COG: COG0683 - ABC-type branched-chain amino acid transport systems%2C periplasmic component%2C SWISSPROT: P04816: Leucine-specific-binding protein livK %5BPrecursor%5D%3B SUPERFAMILY: SSF53822%3B associated with ABC transport system%3B LivK;Dbxref=Genbank:YP_001532865.1,GeneID:5713179;gbkey=CDS;product=putative periplasmic ligand-binding protein;protein_id=YP_001532865.1;transl_table=11
NC_009952.1	RefSeq	gene	1584337	1585446	.	+	.	ID=gene1544;Name=yliI;Dbxref=GeneID:5713180;gbkey=Gene;gene=yliI;locus_tag=Dshi_1523
NC_009952.1	RefSeq	CDS	1584337	1585446	.	+	0	ID=cds1517;Name=YP_001532866.1;Parent=gene1544;Note=COG: COG2133%2C PFAM %28GSDH%29: pfam07995%2C Gene3D: G3DSA:2.120.10.30%2C SUPERFAMILY: SSF50952%2C SWISSPROT P75804: Soluble aldose sugar dehydrogenase yliI %5BPrecursor%5D;Dbxref=Genbank:YP_001532866.1,GeneID:5713180;gbkey=CDS;gene=yliI;product=aldose sugar dehydrogenase;protein_id=YP_001532866.1;transl_table=11
NC_009952.1	RefSeq	gene	1585464	1586033	.	-	.	ID=gene1545;Name=Dshi_1524;Dbxref=GeneID:5713181;gbkey=Gene;locus_tag=Dshi_1524
NC_009952.1	RefSeq	CDS	1585464	1586033	.	-	0	ID=cds1518;Name=YP_001532867.1;Parent=gene1545;Dbxref=Genbank:YP_001532867.1,GeneID:5713181;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532867.1;transl_table=11
NC_009952.1	RefSeq	gene	1586124	1587143	.	-	.	ID=gene1546;Name=Dshi_1525;Dbxref=GeneID:5713182;gbkey=Gene;locus_tag=Dshi_1525
NC_009952.1	RefSeq	CDS	1586124	1587143	.	-	0	ID=cds1519;Name=YP_001532868.1;Parent=gene1546;Note=PFAM: PF01965%2C PF00165%3B COG: COG4977 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain%3B AraC family;Dbxref=Genbank:YP_001532868.1,GeneID:5713182;gbkey=CDS;product=HTH-type transcriptional regulator;protein_id=YP_001532868.1;transl_table=11
NC_009952.1	RefSeq	gene	1587318	1588694	.	+	.	ID=gene1547;Name=aroH;Dbxref=GeneID:5713183;gbkey=Gene;gene=aroH;locus_tag=Dshi_1526
NC_009952.1	RefSeq	CDS	1587318	1588694	.	+	0	ID=cds1520;Name=YP_001532869.1;Parent=gene1547;Note=SWISSPROT P80574: Phospho-2-dehydro-3-deoxyheptonate aldolase aroH%3B PFAM: PF01474-Class-II DAHP synthetase family%2C COG: COG3200 - 3-deoxy-D-arabino-heptulosonate 7-phosphate %28DAHP%29 synthase%2C TIGRFAM: TIGR01358 3-deoxy-7-phosphoheptulonate synthase%2C class II;Dbxref=Genbank:YP_001532869.1,GeneID:5713183;gbkey=CDS;gene=aroH;product=phospho-2-dehydro-3-deoxyheptonate aldolase;protein_id=YP_001532869.1;transl_table=11
NC_009952.1	RefSeq	gene	1588773	1589510	.	-	.	ID=gene1548;Name=Dshi_1527;Dbxref=GeneID:5713184;gbkey=Gene;locus_tag=Dshi_1527
NC_009952.1	RefSeq	CDS	1588773	1589510	.	-	0	ID=cds1521;Name=YP_001532870.1;Parent=gene1548;Note=pfam07310%2C COG5388;Dbxref=Genbank:YP_001532870.1,GeneID:5713184;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532870.1;transl_table=11
NC_009952.1	RefSeq	gene	1589674	1590558	.	+	.	ID=gene1549;Name=Dshi_1528;Dbxref=GeneID:5713185;gbkey=Gene;locus_tag=Dshi_1528
NC_009952.1	RefSeq	CDS	1589674	1590558	.	+	0	ID=cds1522;Name=YP_001532871.1;Parent=gene1549;Note=PFAM: pfam03755%2C pfam08340%3B COG: COG1561 Uncharacterized stress-induced protein%3B TIGRFAM: TIGR00255 conserved hypothetical protein%3B similar to YicC-like;Dbxref=Genbank:YP_001532871.1,GeneID:5713185;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532871.1;transl_table=11
NC_009952.1	RefSeq	gene	1590625	1591278	.	+	.	ID=gene1550;Name=gmk;Dbxref=GeneID:5713186;gbkey=Gene;gene=gmk;locus_tag=Dshi_1529
NC_009952.1	RefSeq	CDS	1590625	1591278	.	+	0	ID=cds1523;Name=YP_001532872.1;Parent=gene1550;Note=Essential for recycling GMP and indirectly%2C cGMP;Dbxref=Genbank:YP_001532872.1,GeneID:5713186;gbkey=CDS;gene=gmk;product=guanylate kinase;protein_id=YP_001532872.1;transl_table=11
NC_009952.1	RefSeq	gene	1591275	1591799	.	+	.	ID=gene1551;Name=gmk;Dbxref=GeneID:5713187;gbkey=Gene;gene=gmk;locus_tag=Dshi_1530
NC_009952.1	RefSeq	CDS	1591275	1591799	.	+	0	ID=cds1524;Name=YP_001532873.1;Parent=gene1551;Note=PFAM: PF00132%2C COG: COG0663 COG: Carbonic anhydrases%2Facetyltransferases%2C isoleucine patch superfamily%3B SUPERFAMILY: SSF51161%2C SWISSPROT: P0A9W9 Protein yrdA%3B LpxA-like;Dbxref=Genbank:YP_001532873.1,GeneID:5713187;gbkey=CDS;product=gamma-class carbonic anhydrase family protein;protein_id=YP_001532873.1;transl_table=11
NC_009952.1	RefSeq	gene	1591903	1592376	.	-	.	ID=gene1552;Name=Dshi_1531;Dbxref=GeneID:5713188;gbkey=Gene;locus_tag=Dshi_1531
NC_009952.1	RefSeq	CDS	1591903	1592376	.	-	0	ID=cds1525;Name=YP_001532874.1;Parent=gene1552;Dbxref=Genbank:YP_001532874.1,GeneID:5713188;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532874.1;transl_table=11
NC_009952.1	RefSeq	gene	1592488	1593549	.	+	.	ID=gene1553;Name=phoR;Dbxref=GeneID:5713189;gbkey=Gene;gene=phoR;locus_tag=Dshi_1532
NC_009952.1	RefSeq	CDS	1592488	1593549	.	+	0	ID=cds1526;Name=YP_001532875.1;Parent=gene1553;Note=SWISSPROT P08400: Phosphate regulon sensor protein phoR%3B PFAM: PF02518%2C PF00512%3B SMART: SM00387%2C SM00091%3B SM00388%3B COG: COG5002-Signal transduction histidine kinase%3B putative phosphate regulon sensor protein %28phoR%29;Dbxref=Genbank:YP_001532875.1,GeneID:5713189;gbkey=CDS;gene=phoR;product=histidine kinase;protein_id=YP_001532875.1;transl_table=11
NC_009952.1	RefSeq	gene	1593702	1594727	.	+	.	ID=gene1554;Name=Dshi_1533;Dbxref=GeneID:5713190;gbkey=Gene;locus_tag=Dshi_1533
NC_009952.1	RefSeq	CDS	1593702	1594727	.	+	0	ID=cds1527;Name=YP_001532876.1;Parent=gene1554;Note=SWISSPROT Q4L694: Phosphate-binding protein pstS %5Bprecursor%5D%3B COG: COG0226 - ABC-type phosphate transport system%2C periplasmic component%3B Gene3D: G3DSA:3.40.190.10%3B SUPERFAMILY: SSF53850%3B associated with ABC transport system involved in phosphate import;Dbxref=Genbank:YP_001532876.1,GeneID:5713190;gbkey=CDS;product=periplasmic-binding protein;protein_id=YP_001532876.1;transl_table=11
NC_009952.1	RefSeq	gene	1594799	1596268	.	+	.	ID=gene1555;Name=pstC;Dbxref=GeneID:5713191;gbkey=Gene;gene=pstC;locus_tag=Dshi_1534
NC_009952.1	RefSeq	CDS	1594799	1596268	.	+	0	ID=cds1528;Name=YP_001532877.1;Parent=gene1555;Note=SWISSPROT: P0AGH8 Phosphate transport system permease protein pstC%2C TIGRFAM: TIGR02138%2C PFAM: PF00528%2C COG: COG0573%2C PROSITE: PS50928;Dbxref=Genbank:YP_001532877.1,GeneID:5713191;gbkey=CDS;gene=pstC;product=phosphate ABC transporter permease;protein_id=YP_001532877.1;transl_table=11
NC_009952.1	RefSeq	gene	1596265	1597617	.	+	.	ID=gene1556;Name=pstA;Dbxref=GeneID:5713192;gbkey=Gene;gene=pstA;locus_tag=Dshi_1535
NC_009952.1	RefSeq	CDS	1596265	1597617	.	+	0	ID=cds1529;Name=YP_001532878.1;Parent=gene1556;Note=SWISSPROT P07654: Phosphate transport system permease protein pstCTIGRFAM: TIGR00974 - phosphate ABC transporter%2C permease protein PstA%2C PFAM: pfam00528%2C COG: COG0573 - ABC-type phosphate transport system%2C permease component%3B PROSITE: PS50928;Dbxref=Genbank:YP_001532878.1,GeneID:5713192;gbkey=CDS;gene=pstA;product=phosphate ABC transporter permease;protein_id=YP_001532878.1;transl_table=11
NC_009952.1	RefSeq	gene	1597634	1598428	.	+	.	ID=gene1557;Name=pstB;Dbxref=GeneID:5713193;gbkey=Gene;gene=pstB;locus_tag=Dshi_1536
NC_009952.1	RefSeq	CDS	1597634	1598428	.	+	0	ID=cds1530;Name=YP_001532879.1;Parent=gene1557;Note=ATP-binding protein%3B PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation;Dbxref=Genbank:YP_001532879.1,GeneID:5713193;gbkey=CDS;gene=pstB;product=phosphate transporter ATP-binding protein;protein_id=YP_001532879.1;transl_table=11
NC_009952.1	RefSeq	gene	1598428	1599141	.	+	.	ID=gene1558;Name=phoU;Dbxref=GeneID:5713194;gbkey=Gene;gene=phoU;locus_tag=Dshi_1537
NC_009952.1	RefSeq	CDS	1598428	1599141	.	+	0	ID=cds1531;Name=YP_001532880.1;Parent=gene1558;Note=SWISSPROT: P0A9K7%2C TIGRFAM: TIGR02135%2C PFAM: pfam01895;Dbxref=Genbank:YP_001532880.1,GeneID:5713194;gbkey=CDS;gene=phoU;product=phosphate transport system protein;protein_id=YP_001532880.1;transl_table=11
NC_009952.1	RefSeq	gene	1599146	1599832	.	+	.	ID=gene1559;Name=phoB;Dbxref=GeneID:5713195;gbkey=Gene;gene=phoB;locus_tag=Dshi_1538
NC_009952.1	RefSeq	CDS	1599146	1599832	.	+	0	ID=cds1532;Name=YP_001532881.1;Parent=gene1559;Note=SWISSPROT: P0AFJ5 Phosphate regulon transcriptional regulatory protein%2C TIGRFAM: TIGR02154 phosphate regulon transcriptional regulatory protein PhoB%2C PFAM: PF00072%2C PF00486%2C COG: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain%3B SUPERFAMILY: SSF52172%3B CheY-like;Dbxref=Genbank:YP_001532881.1,GeneID:5713195;gbkey=CDS;gene=phoB;product=phosphate regulon transcriptional regulatory protein;protein_id=YP_001532881.1;transl_table=11
NC_009952.1	RefSeq	gene	1599990	1600946	.	+	.	ID=gene1560;Name=Dshi_1539;Dbxref=GeneID:5713196;gbkey=Gene;locus_tag=Dshi_1539
NC_009952.1	RefSeq	CDS	1599990	1600946	.	+	0	ID=cds1533;Name=YP_001532882.1;Parent=gene1560;Note=SWISSPROT: P45394 Inner membrane protein yrbG%2C PFAM: PF01699%2C TIGRFAM: TIGR00367 K%2B-dependent Na%2B%2FCa%2B exchanger related-protein%2C COG: COG0530 - Ca2%2B%2FNa%2B antiporter%3B PANTHER: PTHR10846%3B sodium%2Fpotassium%2Fcalcium exchanger family;Dbxref=Genbank:YP_001532882.1,GeneID:5713196;gbkey=CDS;product=inner membrane protein;protein_id=YP_001532882.1;transl_table=11
NC_009952.1	RefSeq	gene	1601019	1602053	.	+	.	ID=gene1561;Name=Dshi_1540;Dbxref=GeneID:5713197;gbkey=Gene;locus_tag=Dshi_1540
NC_009952.1	RefSeq	CDS	1601019	1602053	.	+	0	ID=cds1534;Name=YP_001532883.1;Parent=gene1561;Note=COG: COG0265%2C SUPERFAMILY: SSF50494%2C PFAM: PF00595%2C PF00089%3B peptidase S1B family%3B precursor;Dbxref=Genbank:YP_001532883.1,GeneID:5713197;gbkey=CDS;product=protease;protein_id=YP_001532883.1;transl_table=11
NC_009952.1	RefSeq	gene	1602173	1604119	.	+	.	ID=gene1562;Name=Dshi_1541;Dbxref=GeneID:5713198;gbkey=Gene;locus_tag=Dshi_1541
NC_009952.1	RefSeq	CDS	1602173	1604119	.	+	0	ID=cds1535;Name=YP_001532884.1;Parent=gene1562;Note=PFAM: PF07969%2C SUPERFAMILY: SSF51556%3B COG: COG1574 - Predicted metal-dependent hydrolase with the TIM-barrel fold;Dbxref=Genbank:YP_001532884.1,GeneID:5713198;gbkey=CDS;product=putative amidohydrolase 3;protein_id=YP_001532884.1;transl_table=11
NC_009952.1	RefSeq	gene	1604184	1604711	.	+	.	ID=gene1563;Name=Dshi_1542;Dbxref=GeneID:5713199;gbkey=Gene;locus_tag=Dshi_1542
NC_009952.1	RefSeq	CDS	1604184	1604711	.	+	0	ID=cds1536;Name=YP_001532885.1;Parent=gene1563;Dbxref=Genbank:YP_001532885.1,GeneID:5713199;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532885.1;transl_table=11
NC_009952.1	RefSeq	gene	1604724	1605764	.	-	.	ID=gene1564;Name=Dshi_1543;Dbxref=GeneID:5713200;gbkey=Gene;locus_tag=Dshi_1543
NC_009952.1	RefSeq	CDS	1604724	1605764	.	-	0	ID=cds1537;Name=YP_001532886.1;Parent=gene1564;Note=PFAM: PF01734%2C SUPERFAMILY: SSF52151%3B COG: COG1752 Predicted esterase of the alpha-beta hydrolase superfamily%3B similar to Patatin-like phospholipase;Dbxref=Genbank:YP_001532886.1,GeneID:5713200;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532886.1;transl_table=11
NC_009952.1	RefSeq	gene	1605788	1606561	.	-	.	ID=gene1565;Name=Dshi_1544;Dbxref=GeneID:5713201;gbkey=Gene;locus_tag=Dshi_1544
NC_009952.1	RefSeq	CDS	1605788	1606561	.	-	0	ID=cds1538;Name=YP_001532887.1;Parent=gene1565;Note=SWISSPROT P99093: 3-oxoacyl-%5Bacyl-carrier-protein%5D reductase fabG%3B TIGRFAM: TIGR01963 3-hydroxybutyrate dehydrogenase%3B PRINTS: PR00080%2C PR00081%3B PANTHER: PTHR19410%2C PFAM: PF00106 short chain dehydrogenase%2Freductase%2C SUPERFAMILY: SSF51735%2C Gene3D: G3DSA:3.40.50.720%2C COG: COG1028 Dehydrogenases with different specificities %28related to short-chain alcohol dehydrogenases%29;Dbxref=Genbank:YP_001532887.1,GeneID:5713201;gbkey=CDS;product=short-chain dehydrogenase%2Freductase family protein;protein_id=YP_001532887.1;transl_table=11
NC_009952.1	RefSeq	gene	1606867	1608687	.	+	.	ID=gene1566;Name=Dshi_1545;Dbxref=GeneID:5713202;gbkey=Gene;locus_tag=Dshi_1545
NC_009952.1	RefSeq	CDS	1606867	1608687	.	+	0	ID=cds1539;Name=YP_001532888.1;Parent=gene1566;Note=COG: COG4166 - ABC-type oligopeptide transport system%2C periplasmic component%3B PFAM: PF00496;Dbxref=Genbank:YP_001532888.1,GeneID:5713202;gbkey=CDS;product=putative extracellular solute-binding protein;protein_id=YP_001532888.1;transl_table=11
NC_009952.1	RefSeq	gene	1608891	1609703	.	-	.	ID=gene1567;Name=Dshi_1546;Dbxref=GeneID:5713203;gbkey=Gene;locus_tag=Dshi_1546
NC_009952.1	RefSeq	CDS	1608891	1609703	.	-	0	ID=cds1540;Name=YP_001532889.1;Parent=gene1567;Note=PFAM: PF04367%3B COG: COG2928 - Uncharacterized conserved protein;Dbxref=Genbank:YP_001532889.1,GeneID:5713203;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532889.1;transl_table=11
NC_009952.1	RefSeq	gene	1609759	1610724	.	-	.	ID=gene1568;Name=Dshi_1547;Dbxref=GeneID:5712691;gbkey=Gene;locus_tag=Dshi_1547
NC_009952.1	RefSeq	CDS	1609759	1610724	.	-	0	ID=cds1541;Name=YP_001532890.1;Parent=gene1568;Note=SUPERFAMILY: SSF53613 Ribokinase-like%3B COG: COG0524%2C Sugar kinase%2C ribokinase family%3B PFAM: PF00294%3B ribokinase family;Dbxref=Genbank:YP_001532890.1,GeneID:5712691;gbkey=CDS;product=putative carbohydrate kinase;protein_id=YP_001532890.1;transl_table=11
NC_009952.1	RefSeq	gene	1611039	1611818	.	+	.	ID=gene1569;Name=rpsB;Dbxref=GeneID:5712692;gbkey=Gene;gene=rpsB;locus_tag=Dshi_1548
NC_009952.1	RefSeq	CDS	1611039	1611818	.	+	0	ID=cds1542;Name=YP_001532891.1;Parent=gene1569;Note=one of the last subunits in the assembly of the 30S subunit%3B absence of S2 does not inhibit assembly but results in an inactive subunit;Dbxref=Genbank:YP_001532891.1,GeneID:5712692;gbkey=CDS;gene=rpsB;product=30S ribosomal protein S2;protein_id=YP_001532891.1;transl_table=11
NC_009952.1	RefSeq	gene	1611914	1612789	.	+	.	ID=gene1570;Name=tsf;Dbxref=GeneID:5712693;gbkey=Gene;gene=tsf;locus_tag=Dshi_1549
NC_009952.1	RefSeq	CDS	1611914	1612789	.	+	0	ID=cds1543;Name=YP_001532892.1;Parent=gene1570;Note=EF-Ts%3B functions during elongation stage of protein translation%3B forms a dimer%3B associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu;Dbxref=Genbank:YP_001532892.1,GeneID:5712693;gbkey=CDS;gene=tsf;product=elongation factor Ts;protein_id=YP_001532892.1;transl_table=11
NC_009952.1	RefSeq	gene	1613091	1613873	.	-	.	ID=gene1571;Name=Dshi_1550;Dbxref=GeneID:5712694;gbkey=Gene;locus_tag=Dshi_1550
NC_009952.1	RefSeq	CDS	1613091	1613873	.	-	0	ID=cds1544;Name=YP_001532893.1;Parent=gene1571;Note=PFAM: PF00196%2C PF03472%3B PROSITE: PS50043%3B SUPERFAMILY: SSF75516%2C SSF46894%3B COG: COG2197%3B luxR family;Dbxref=Genbank:YP_001532893.1,GeneID:5712694;gbkey=CDS;product=putative regulatory protein;protein_id=YP_001532893.1;transl_table=11
NC_009952.1	RefSeq	gene	1613870	1614322	.	-	.	ID=gene1572;Name=Dshi_1551;Dbxref=GeneID:5712695;gbkey=Gene;locus_tag=Dshi_1551
NC_009952.1	RefSeq	CDS	1613870	1614322	.	-	0	ID=cds1545;Name=YP_001532894.1;Parent=gene1572;Note=catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis;Dbxref=Genbank:YP_001532894.1,GeneID:5712695;gbkey=CDS;product=3-dehydroquinate dehydratase;protein_id=YP_001532894.1;transl_table=11
NC_009952.1	RefSeq	gene	1614497	1615753	.	+	.	ID=gene1573;Name=Dshi_1552;Dbxref=GeneID:5712696;gbkey=Gene;locus_tag=Dshi_1552
NC_009952.1	RefSeq	CDS	1614497	1615753	.	+	0	ID=cds1546;Name=YP_001532895.1;Parent=gene1573;Note=SWISSPROT: P44093%2C PFAM: PF07005%3B similar to uncharacterized protein HI1011;Dbxref=Genbank:YP_001532895.1,GeneID:5712696;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532895.1;transl_table=11
NC_009952.1	RefSeq	gene	1615750	1616400	.	+	.	ID=gene1574;Name=Dshi_1553;Dbxref=GeneID:5712697;gbkey=Gene;locus_tag=Dshi_1553
NC_009952.1	RefSeq	CDS	1615750	1616400	.	+	0	ID=cds1547;Name=YP_001532896.1;Parent=gene1574;Note=SUPERFAMILY: SSF53639%3B PFAM: PF00596%3B COG: COG0235%2C Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases;Dbxref=Genbank:YP_001532896.1,GeneID:5712697;gbkey=CDS;product=putative aldolase;protein_id=YP_001532896.1;transl_table=11
NC_009952.1	RefSeq	gene	1616397	1617161	.	+	.	ID=gene1575;Name=Dshi_1554;Dbxref=GeneID:5712698;gbkey=Gene;locus_tag=Dshi_1554
NC_009952.1	RefSeq	CDS	1616397	1617161	.	+	0	ID=cds1548;Name=YP_001532897.1;Parent=gene1575;Note=PFAM: PF01261%2C Gene3D: G3DSA:3.20.20.150%2C SUPERFAMILY: SSF51658%2C SWISSPROT: Q6NUD4%2C P30147%3B COG: COG3622;Dbxref=Genbank:YP_001532897.1,GeneID:5712698;gbkey=CDS;product=putative isomerase;protein_id=YP_001532897.1;transl_table=11
NC_009952.1	RefSeq	gene	1617231	1617857	.	-	.	ID=gene1576;Name=Dshi_1555;Dbxref=GeneID:5712699;gbkey=Gene;locus_tag=Dshi_1555
NC_009952.1	RefSeq	CDS	1617231	1617857	.	-	0	ID=cds1549;Name=YP_001532898.1;Parent=gene1576;Note=PFAM: PF01381%2C PF07883%3B SUPERFAMILY: SSF51182%3B Gene3D: G3DSA:1.10.260.40%3B HTH type;Dbxref=Genbank:YP_001532898.1,GeneID:5712699;gbkey=CDS;product=putative transcriptional regulator;protein_id=YP_001532898.1;transl_table=11
NC_009952.1	RefSeq	gene	1617876	1619435	.	+	.	ID=gene1577;Name=Dshi_1556;Dbxref=GeneID:5712700;gbkey=Gene;locus_tag=Dshi_1556
NC_009952.1	RefSeq	CDS	1617876	1619435	.	+	0	ID=cds1550;Name=YP_001532899.1;Parent=gene1577;Note=COG: COG0318%2C Acyl-CoA synthetases %28AMP-forming%29%2FAMP-acid ligases II%3B PFAM: PF00501%2C PANTHER: PTHR11968%2C PROSITE: PS00455%2C Gene3D: G3DSA:3.40.50.980%2C G3DSA:3.30.300.30;Dbxref=Genbank:YP_001532899.1,GeneID:5712700;gbkey=CDS;product=putative ATP-dependent AMP-binding enzyme;protein_id=YP_001532899.1;transl_table=11
NC_009952.1	RefSeq	gene	1619422	1620090	.	+	.	ID=gene1578;Name=Dshi_1557;Dbxref=GeneID:5712701;gbkey=Gene;locus_tag=Dshi_1557
NC_009952.1	RefSeq	CDS	1619422	1620090	.	+	0	ID=cds1551;Name=YP_001532900.1;Parent=gene1578;Note=PFAM: PF01323%2C SUPERFAMILY: SSF52833%2C COG: COG2761%2C Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis;Dbxref=Genbank:YP_001532900.1,GeneID:5712701;gbkey=CDS;product=putative DSBA oxidoreductase;protein_id=YP_001532900.1;transl_table=11
NC_009952.1	RefSeq	gene	1620057	1620377	.	-	.	ID=gene1579;Name=Dshi_1558;Dbxref=GeneID:5712702;gbkey=Gene;locus_tag=Dshi_1558
NC_009952.1	RefSeq	CDS	1620057	1620377	.	-	0	ID=cds1552;Name=YP_001532901.1;Parent=gene1579;Dbxref=Genbank:YP_001532901.1,GeneID:5712702;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532901.1;transl_table=11
NC_009952.1	RefSeq	gene	1620493	1621701	.	+	.	ID=gene1580;Name=Dshi_1559;Dbxref=GeneID:5712703;gbkey=Gene;locus_tag=Dshi_1559
NC_009952.1	RefSeq	CDS	1620493	1621701	.	+	0	ID=cds1553;Name=YP_001532902.1;Parent=gene1580;Note=SWISSPROT: P28246%2C TIGRFAM: TIGR00710- Drug resistance transporter Bcr%2FCflA subfamily%2C PANTHER: PTHR10074 Major facilitator subfamily member%2C Bicyclomycin resistance protein%3B COG: COG2814- Arabinose efflux permease%3B PFAM: PF07690%3B SUPERFAMILY: SSF103473%3B PROSITE: PS50850%3B putative bicyclomycin resistance protein;Dbxref=Genbank:YP_001532902.1,GeneID:5712703;gbkey=CDS;product=major facilitator superfamily transporter;protein_id=YP_001532902.1;transl_table=11
NC_009952.1	RefSeq	gene	1621839	1622270	.	+	.	ID=gene1581;Name=Dshi_1560;Dbxref=GeneID:5712704;gbkey=Gene;locus_tag=Dshi_1560
NC_009952.1	RefSeq	CDS	1621839	1622270	.	+	0	ID=cds1554;Name=YP_001532903.1;Parent=gene1581;Dbxref=Genbank:YP_001532903.1,GeneID:5712704;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532903.1;transl_table=11
NC_009952.1	RefSeq	gene	1622403	1625885	.	-	.	ID=gene1582;Name=mfd;Dbxref=GeneID:5712705;gbkey=Gene;gene=mfd;locus_tag=Dshi_1561
NC_009952.1	RefSeq	CDS	1622403	1625885	.	-	0	ID=cds1555;Name=YP_001532904.1;Parent=gene1582;Note=SWISSPROT P30958: Transcription-repair-coupling factor%2C TIGRFAM: TIGR00580 -Transcription-repair coupling factor%3B PFAM: PF03461%2C PF02559%2C PF00270%2C PF00271;Dbxref=Genbank:YP_001532904.1,GeneID:5712705;gbkey=CDS;gene=mfd;product=transcription repair coupling factor;protein_id=YP_001532904.1;transl_table=11
NC_009952.1	RefSeq	gene	1626290	1626820	.	-	.	ID=gene1583;Name=Dshi_1562;Dbxref=GeneID:5712706;gbkey=Gene;locus_tag=Dshi_1562
NC_009952.1	RefSeq	CDS	1626290	1626820	.	-	0	ID=cds1556;Name=YP_001532905.1;Parent=gene1583;Dbxref=Genbank:YP_001532905.1,GeneID:5712706;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532905.1;transl_table=11
NC_009952.1	RefSeq	gene	1626965	1627966	.	+	.	ID=gene1584;Name=hemB1;Dbxref=GeneID:5712707;gbkey=Gene;gene=hemB1;locus_tag=Dshi_1563
NC_009952.1	RefSeq	CDS	1626965	1627966	.	+	0	ID=cds1557;Name=YP_001532906.1;Parent=gene1584;Note=catalyzes the formation of porphobilinogen from 5-aminolevulinate;Dbxref=Genbank:YP_001532906.1,GeneID:5712707;gbkey=CDS;gene=hemB1;product=delta-aminolevulinic acid dehydratase;protein_id=YP_001532906.1;transl_table=11
NC_009952.1	RefSeq	gene	1628155	1628724	.	+	.	ID=gene1585;Name=Dshi_1564;Dbxref=GeneID:5712708;gbkey=Gene;locus_tag=Dshi_1564
NC_009952.1	RefSeq	CDS	1628155	1628724	.	+	0	ID=cds1558;Name=YP_001532907.1;Parent=gene1585;Note=PROSITE: PS51257%2C PFAM: pfam04366%2C COG: COG2930 - Uncharacterized conserved protein;Dbxref=Genbank:YP_001532907.1,GeneID:5712708;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532907.1;transl_table=11
NC_009952.1	RefSeq	gene	1628799	1631282	.	+	.	ID=gene1586;Name=Dshi_1565;Dbxref=GeneID:5712709;gbkey=Gene;locus_tag=Dshi_1565
NC_009952.1	RefSeq	CDS	1628799	1631282	.	+	0	ID=cds1559;Name=YP_001532908.1;Parent=gene1586;Note=PFAM: PF01804%2C COG: COG2366 - Protein related to penicillin acylase%3B putative penicillin acylase;Dbxref=Genbank:YP_001532908.1,GeneID:5712709;gbkey=CDS;product=acylase;protein_id=YP_001532908.1;transl_table=11
NC_009952.1	RefSeq	gene	1631386	1632633	.	-	.	ID=gene1587;Name=hflX;Dbxref=GeneID:5712710;gbkey=Gene;gene=hflX;locus_tag=Dshi_1566
NC_009952.1	RefSeq	CDS	1631386	1632633	.	-	0	ID=cds1560;Name=YP_001532909.1;Parent=gene1587;Note=SWISSPROT: P25519 - GTP-binding protein hflX%2C PANTHER: PTHR10229%2C PFAM: PF01926%2C SUPERFAMILY: SSF52540%2C Gene3D: G3DSA:3.40.50.300;Dbxref=Genbank:YP_001532909.1,GeneID:5712710;gbkey=CDS;gene=hflX;product=GTP-binding protein;protein_id=YP_001532909.1;transl_table=11
NC_009952.1	RefSeq	gene	1632675	1632953	.	-	.	ID=gene1588;Name=hfq;Dbxref=GeneID:5712711;gbkey=Gene;gene=hfq;locus_tag=Dshi_1567
NC_009952.1	RefSeq	CDS	1632675	1632953	.	-	0	ID=cds1561;Name=YP_001532910.1;Parent=gene1588;Note=Stimulates the elongation of poly%28A%29 tails;Dbxref=Genbank:YP_001532910.1,GeneID:5712711;gbkey=CDS;gene=hfq;product=RNA-binding protein Hfq;protein_id=YP_001532910.1;transl_table=11
NC_009952.1	RefSeq	gene	1633034	1634542	.	-	.	ID=gene1589;Name=trkH;Dbxref=GeneID:5712712;gbkey=Gene;gene=trkH;locus_tag=Dshi_1568
NC_009952.1	RefSeq	CDS	1633034	1634542	.	-	0	ID=cds1562;Name=YP_001532911.1;Parent=gene1589;Note=SWISSPROT: Q9L6L2%2C P23849 - Trk system potassium uptake protein trkH%3B COG: COG0168 - Trk-type K%2B transport systems%2C membrane components%3B PFAM: PF02386;Dbxref=Genbank:YP_001532911.1,GeneID:5712712;gbkey=CDS;gene=trkH;product=potassium uptake protein;protein_id=YP_001532911.1;transl_table=11
NC_009952.1	RefSeq	gene	1634542	1635918	.	-	.	ID=gene1590;Name=trkA;Dbxref=GeneID:5712713;gbkey=Gene;gene=trkA;locus_tag=Dshi_1569
NC_009952.1	RefSeq	CDS	1634542	1635918	.	-	0	ID=cds1563;Name=YP_001532912.1;Parent=gene1590;Note=involved in potassium uptake%3B found to be peripherally associated with the inner membrane in Escherichia coli%3B contains an NAD-binding domain;Dbxref=Genbank:YP_001532912.1,GeneID:5712713;gbkey=CDS;gene=trkA;product=potassium transporter peripheral membrane protein;protein_id=YP_001532912.1;transl_table=11
NC_009952.1	RefSeq	gene	1636081	1636563	.	+	.	ID=gene1591;Name=Dshi_1570;Dbxref=GeneID:5712714;gbkey=Gene;locus_tag=Dshi_1570
NC_009952.1	RefSeq	CDS	1636081	1636563	.	+	0	ID=cds1564;Name=YP_001532913.1;Parent=gene1591;Dbxref=Genbank:YP_001532913.1,GeneID:5712714;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532913.1;transl_table=11
NC_009952.1	RefSeq	gene	1636586	1637023	.	+	.	ID=gene1592;Name=Dshi_1571;Dbxref=GeneID:5712715;gbkey=Gene;locus_tag=Dshi_1571
NC_009952.1	RefSeq	CDS	1636586	1637023	.	+	0	ID=cds1565;Name=YP_001532914.1;Parent=gene1592;Dbxref=Genbank:YP_001532914.1,GeneID:5712715;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532914.1;transl_table=11
NC_009952.1	RefSeq	gene	1637185	1638600	.	-	.	ID=gene1593;Name=ntrX;Dbxref=GeneID:5712716;gbkey=Gene;gene=ntrX;locus_tag=Dshi_1572
NC_009952.1	RefSeq	CDS	1637185	1638600	.	-	0	ID=cds1566;Name=YP_001532915.1;Parent=gene1593;Note=SWISSPROT: P03029 - Nitrogen assimilation regulatory protein ntrX%3B PFAM: PF00072%2C PF00158%2C PF02954%3B SUPERFAMILY: SSF52172%2C SSF52540%3B COG: COG2204%3B sigma factor 54;Dbxref=Genbank:YP_001532915.1,GeneID:5712716;gbkey=CDS;gene=ntrX;product=nitrogen assimilation regulator receiver protein;protein_id=YP_001532915.1;transl_table=11
NC_009952.1	RefSeq	gene	1638597	1640900	.	-	.	ID=gene1594;Name=ntrY;Dbxref=GeneID:5712717;gbkey=Gene;gene=ntrY;locus_tag=Dshi_1573
NC_009952.1	RefSeq	CDS	1638597	1640900	.	-	0	ID=cds1567;Name=YP_001532916.1;Parent=gene1594;Note=SWISSPROT Q04850: Nitrogen regulation protein ntrY%3B PANTHER: Two-component Histidine Kinase%3B COG: COG5000 %26 PIRSF - Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation%3B PFAM: PF00512%2C PF00672%2C PF02518%3B TIGRFAM: TIGR00229%3B SMART: SM00091%3B PROSITE: PS50112%3B nitrogen regulation protein;Dbxref=Genbank:YP_001532916.1,GeneID:5712717;gbkey=CDS;gene=ntrY;product=histidine kinase;protein_id=YP_001532916.1;transl_table=11
NC_009952.1	RefSeq	gene	1640962	1642326	.	-	.	ID=gene1595;Name=ntrC;Dbxref=GeneID:5712718;gbkey=Gene;gene=ntrC;locus_tag=Dshi_1574
NC_009952.1	RefSeq	CDS	1640962	1642326	.	-	0	ID=cds1568;Name=YP_001532917.1;Parent=gene1595;Note=SWISSPROT P10577: Nitrogen assimilation regulatory protein%3B COG: COG2204 - Response regulator containing CheY-like receiver%2C AAA-type ATPase%2C and DNA-binding domains%3B PFAM: PF02954%2C PF00072%2C PF00158%3B SUPERFAMILY: SSF52172%3B sigma factor 54;Dbxref=Genbank:YP_001532917.1,GeneID:5712718;gbkey=CDS;gene=ntrC;product=nitrogen assimilation regulator receiver protein;protein_id=YP_001532917.1;transl_table=11
NC_009952.1	RefSeq	gene	1642326	1643399	.	-	.	ID=gene1596;Name=ntrB;Dbxref=GeneID:5712719;gbkey=Gene;gene=ntrB;locus_tag=Dshi_1575
NC_009952.1	RefSeq	CDS	1642326	1643399	.	-	0	ID=cds1569;Name=YP_001532918.1;Parent=gene1596;Note=SWISSPROT P09431%2C P0AFB5: Nitrogen regulation protein ntrB%3B COG: COG3852 - Signal transduction histidine kinase%2C nitrogen specific%3B PFAM: PF00512%2C PF02518%3B SMART: SM00091;Dbxref=Genbank:YP_001532918.1,GeneID:5712719;gbkey=CDS;gene=ntrB;product=nitrogen regulation protein;protein_id=YP_001532918.1;transl_table=11
NC_009952.1	RefSeq	gene	1643396	1644397	.	-	.	ID=gene1597;Name=dus;Dbxref=GeneID:5712720;gbkey=Gene;gene=dus;locus_tag=Dshi_1576
NC_009952.1	RefSeq	CDS	1643396	1644397	.	-	0	ID=cds1570;Name=YP_001532919.1;Parent=gene1597;Note=TIGRFAM: Dihydrouridine synthase TIM-barrel%2C NifR3%3B COG: COG0042 - tRNA-dihydrouridine synthase%2C PFAM: pfam01207%3B alternative gene name: nifR;Dbxref=Genbank:YP_001532919.1,GeneID:5712720;gbkey=CDS;gene=dus;product=tRNA-dihydrouidine synthase;protein_id=YP_001532919.1;transl_table=11
NC_009952.1	RefSeq	gene	1644540	1645742	.	+	.	ID=gene1598;Name=ispDF;Dbxref=GeneID:5712721;gbkey=Gene;gene=ispDF;locus_tag=Dshi_1577
NC_009952.1	RefSeq	CDS	1644540	1645742	.	+	0	ID=cds1571;Name=YP_001532920.1;Parent=gene1598;Note=SWISSPROT Q5LRN5: Bifunctional enzyme ispD%2FispF%3B TIGRFAM: TIGR00151%2C TIGR00453%3B PFAM: pfam01128%2C pfam02542;Dbxref=Genbank:YP_001532920.1,GeneID:5712721;gbkey=CDS;gene=ispDF;product=bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase%2F2-C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase;protein_id=YP_001532920.1;transl_table=11
NC_009952.1	RefSeq	gene	1645739	1646227	.	+	.	ID=gene1599;Name=ispDF;Dbxref=GeneID:5712722;gbkey=Gene;gene=ispDF;locus_tag=Dshi_1578
NC_009952.1	RefSeq	CDS	1645739	1646227	.	+	0	ID=cds1572;Name=YP_001532921.1;Parent=gene1599;Note=SWISSPROT: P18200%3B COG: COG1267 - Phosphatidylglycerophosphatase A and related proteins%3B PFAM: PF04608;Dbxref=Genbank:YP_001532921.1,GeneID:5712722;gbkey=CDS;product=putative phosphatidylglycerophosphatase A;protein_id=YP_001532921.1;transl_table=11
NC_009952.1	RefSeq	gene	1646224	1646706	.	+	.	ID=gene1600;Name=Dshi_1579;Dbxref=GeneID:5712723;gbkey=Gene;locus_tag=Dshi_1579
NC_009952.1	RefSeq	CDS	1646224	1646706	.	+	0	ID=cds1573;Name=YP_001532922.1;Parent=gene1600;Note=TIGRFAM: TIGR00199 competence%2Fdamage-inducible protein CinA C-terminal domain%3B COG: COG1546 - Uncharacterized protein %28competence- and mitomycin-induced%29%3B PFAM: pfam02464;Dbxref=Genbank:YP_001532922.1,GeneID:5712723;gbkey=CDS;product=CinA-like protein;protein_id=YP_001532922.1;transl_table=11
NC_009952.1	RefSeq	gene	1646685	1647200	.	-	.	ID=gene1601;Name=Dshi_1580;Dbxref=GeneID:5712724;gbkey=Gene;locus_tag=Dshi_1580
NC_009952.1	RefSeq	CDS	1646685	1647200	.	-	0	ID=cds1574;Name=YP_001532923.1;Parent=gene1601;Note=COG: COG2867-Oligoketide cyclase%2Flipid transport protein%3B PFAM: PF03364;Dbxref=Genbank:YP_001532923.1,GeneID:5712724;gbkey=CDS;product=putative polyketide cyclase %2F dehydrase;protein_id=YP_001532923.1;transl_table=11
NC_009952.1	RefSeq	gene	1647224	1647760	.	+	.	ID=gene1602;Name=hpt;Dbxref=GeneID:5712725;gbkey=Gene;gene=hpt;locus_tag=Dshi_1581
NC_009952.1	RefSeq	CDS	1647224	1647760	.	+	0	ID=cds1575;Name=YP_001532924.1;Parent=gene1602;Note=SWISSPROT P0A9M2: Hypoxanthine phosphoribosyltransferase%2C also high similarity to hypoxanthine-guanine phosphoribosyltransferase %28SWISSPROT P37171%29%3B COG: COG0634 Hypoxanthine-guanine phosphoribosyltransferase%3B PFAM: PF00156;Dbxref=Genbank:YP_001532924.1,GeneID:5712725;gbkey=CDS;gene=hpt;product=hypoxanthine phosphoribosyltransferase;protein_id=YP_001532924.1;transl_table=11
NC_009952.1	RefSeq	gene	1647958	1648476	.	-	.	ID=gene1603;Name=Dshi_1582;Dbxref=GeneID:5712726;gbkey=Gene;locus_tag=Dshi_1582
NC_009952.1	RefSeq	CDS	1647958	1648476	.	-	0	ID=cds1576;Name=YP_001532925.1;Parent=gene1603;Note=similar to transmembrane transport protein;Dbxref=Genbank:YP_001532925.1,GeneID:5712726;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532925.1;transl_table=11
NC_009952.1	RefSeq	gene	1648653	1649603	.	-	.	ID=gene1604;Name=lipA;Dbxref=GeneID:5712727;gbkey=Gene;gene=lipA;locus_tag=Dshi_1583
NC_009952.1	RefSeq	CDS	1648653	1649603	.	-	0	ID=cds1577;Name=YP_001532926.1;Parent=gene1604;Note=catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein %28ACP%29 bound to an octanoyl group to produce a lipoyl group;Dbxref=Genbank:YP_001532926.1,GeneID:5712727;gbkey=CDS;gene=lipA;product=lipoyl synthase;protein_id=YP_001532926.1;transl_table=11
NC_009952.1	RefSeq	gene	1649803	1650927	.	-	.	ID=gene1605;Name=Dshi_1584;Dbxref=GeneID:5712728;gbkey=Gene;locus_tag=Dshi_1584
NC_009952.1	RefSeq	CDS	1649803	1650927	.	-	0	ID=cds1578;Name=YP_001532927.1;Parent=gene1605;Dbxref=Genbank:YP_001532927.1,GeneID:5712728;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532927.1;transl_table=11
NC_009952.1	RefSeq	gene	1651121	1651423	.	+	.	ID=gene1606;Name=Dshi_1585;Dbxref=GeneID:5712729;gbkey=Gene;locus_tag=Dshi_1585
NC_009952.1	RefSeq	CDS	1651121	1651423	.	+	0	ID=cds1579;Name=YP_001532928.1;Parent=gene1606;Dbxref=Genbank:YP_001532928.1,GeneID:5712729;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532928.1;transl_table=11
NC_009952.1	RefSeq	gene	1651441	1652988	.	-	.	ID=gene1607;Name=mttb;Dbxref=GeneID:5712730;gbkey=Gene;gene=mttb;locus_tag=Dshi_1586
NC_009952.1	RefSeq	CDS	1651441	1652988	.	-	0	ID=cds1580;Name=YP_001532929.1;Parent=gene1607;Note=SWISSPROT O93658: Trimethylamine methyltransferase mttB%3B COG: COG5598 - Trimethylamine:corrinoid methyltransferase%3B PFAM: pfam06253;Dbxref=Genbank:YP_001532929.1,GeneID:5712730;gbkey=CDS;gene=mttb;product=trimethylamine methyltransferase;protein_id=YP_001532929.1;transl_table=11
NC_009952.1	RefSeq	gene	1653185	1654747	.	+	.	ID=gene1608;Name=guaA;Dbxref=GeneID:5712731;gbkey=Gene;gene=guaA;locus_tag=Dshi_1587
NC_009952.1	RefSeq	CDS	1653185	1654747	.	+	0	ID=cds1581;Name=YP_001532930.1;Parent=gene1608;Note=contains glutamine-hydrolyzing domain and glutamine amidotransferase%3B GMP-binding domain%3B functions to produce GMP from XMP in the IMP pathway;Dbxref=Genbank:YP_001532930.1,GeneID:5712731;gbkey=CDS;gene=guaA;product=GMP synthase;protein_id=YP_001532930.1;transl_table=11
NC_009952.1	RefSeq	gene	1654738	1655379	.	+	.	ID=gene1609;Name=guaA;Dbxref=GeneID:5712732;gbkey=Gene;gene=guaA;locus_tag=Dshi_1588
NC_009952.1	RefSeq	CDS	1654738	1655379	.	+	0	ID=cds1582;Name=YP_001532931.1;Parent=gene1609;Note=COG: COG1434-Uncharacterized conserved protein%3B PFAM: pfam02698- Uncharacterized ACR%2C COG1434;Dbxref=Genbank:YP_001532931.1,GeneID:5712732;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532931.1;transl_table=11
NC_009952.1	RefSeq	gene	1655376	1656263	.	+	.	ID=gene1610;Name=Dshi_1589;Dbxref=GeneID:5712733;gbkey=Gene;locus_tag=Dshi_1589
NC_009952.1	RefSeq	CDS	1655376	1656263	.	+	0	ID=cds1583;Name=YP_001532932.1;Parent=gene1610;Note=SWISSPROT Q68XV0: S-adenosylmethionine uptake transporter%3B PFAM: pfam00892%3B similar to S-adenosylmethionine uptake transporter;Dbxref=Genbank:YP_001532932.1,GeneID:5712733;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532932.1;transl_table=11
NC_009952.1	RefSeq	gene	1656339	1657472	.	+	.	ID=gene1611;Name=Dshi_1590;Dbxref=GeneID:5712734;gbkey=Gene;locus_tag=Dshi_1590
NC_009952.1	RefSeq	CDS	1656339	1657472	.	+	0	ID=cds1584;Name=YP_001532933.1;Parent=gene1611;Note=SUPERFAMILY%3B SST56935-Porins%3B PFAM: PF03349-Outer membrane protein transport protein %28OMPP1%2FFadL%2FTodX%29%3B COG: COG2067-Long-chain fatty acid transport protein;Dbxref=Genbank:YP_001532933.1,GeneID:5712734;gbkey=CDS;product=porin;protein_id=YP_001532933.1;transl_table=11
NC_009952.1	RefSeq	gene	1657563	1658480	.	+	.	ID=gene1612;Name=Dshi_1591;Dbxref=GeneID:5712735;gbkey=Gene;locus_tag=Dshi_1591
NC_009952.1	RefSeq	CDS	1657563	1658480	.	+	0	ID=cds1585;Name=YP_001532934.1;Parent=gene1612;Note=PFAM: PF00892%2C SUPERFAMILY: SSF103481%3B similar to Multidrug resistance efflux transporter EmrE;Dbxref=Genbank:YP_001532934.1,GeneID:5712735;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532934.1;transl_table=11
NC_009952.1	RefSeq	gene	1658518	1659390	.	+	.	ID=gene1613;Name=Dshi_1592;Dbxref=GeneID:5712736;gbkey=Gene;locus_tag=Dshi_1592
NC_009952.1	RefSeq	CDS	1658518	1659390	.	+	0	ID=cds1586;Name=YP_001532935.1;Parent=gene1613;Note=SUPERFAMILY: SSF52540;Dbxref=Genbank:YP_001532935.1,GeneID:5712736;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532935.1;transl_table=11
NC_009952.1	RefSeq	gene	1659426	1660343	.	+	.	ID=gene1614;Name=metA;Dbxref=GeneID:5712737;gbkey=Gene;gene=metA;locus_tag=Dshi_1593
NC_009952.1	RefSeq	CDS	1659426	1660343	.	+	0	ID=cds1587;Name=YP_001532936.1;Parent=gene1614;Note=catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis;Dbxref=Genbank:YP_001532936.1,GeneID:5712737;gbkey=CDS;gene=metA;product=homoserine O-succinyltransferase;protein_id=YP_001532936.1;transl_table=11
NC_009952.1	RefSeq	gene	1660318	1661280	.	+	.	ID=gene1615;Name=metA;Dbxref=GeneID:5712738;gbkey=Gene;gene=metA;locus_tag=Dshi_1594
NC_009952.1	RefSeq	CDS	1660318	1661280	.	+	0	ID=cds1588;Name=YP_001532937.1;Parent=gene1615;Note=COG: COG0596- Predicted hydrolases or acyltransferases %28alpha%2Fbeta hydrolase superfamily%29%3B PFAM: pfam00561%3B SPRINTS: PR00111;Dbxref=Genbank:YP_001532937.1,GeneID:5712738;gbkey=CDS;product=putative alpha%2Fbeta hydrolase;protein_id=YP_001532937.1;transl_table=11
NC_009952.1	RefSeq	gene	1661362	1662231	.	+	.	ID=gene1616;Name=Dshi_1595;Dbxref=GeneID:5712739;gbkey=Gene;locus_tag=Dshi_1595
NC_009952.1	RefSeq	CDS	1661362	1662231	.	+	0	ID=cds1589;Name=YP_001532938.1;Parent=gene1616;Note=PFAM: PF03976;Dbxref=Genbank:YP_001532938.1,GeneID:5712739;gbkey=CDS;product=putative polyphosphate kinase 2;protein_id=YP_001532938.1;transl_table=11
NC_009952.1	RefSeq	gene	1662224	1662841	.	+	.	ID=gene1617;Name=Dshi_1596;Dbxref=GeneID:5712740;gbkey=Gene;locus_tag=Dshi_1596
NC_009952.1	RefSeq	CDS	1662224	1662841	.	+	0	ID=cds1590;Name=YP_001532939.1;Parent=gene1617;Note=PFAM: PF00440%3B COG: COG1309-Transcriptional regulator%3B similar to HTH-type transcriptional regulator %28tetR family%29;Dbxref=Genbank:YP_001532939.1,GeneID:5712740;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532939.1;transl_table=11
NC_009952.1	RefSeq	gene	1662856	1663923	.	-	.	ID=gene1618;Name=potA1;Dbxref=GeneID:5712741;gbkey=Gene;gene=potA1;locus_tag=Dshi_1597
NC_009952.1	RefSeq	CDS	1662856	1663923	.	-	0	ID=cds1591;Name=YP_001532940.1;Parent=gene1618;Note=SWISSPROT P69874: Spermidine%2Fputrescine import ATP-binding protein potA%3B COG: COG3842-ABC-type spermidine%2Fputrescine transport systems%2C ATPase components%3B TIGRFAM: TIGR01187- spermidine%2Fputrescine ABC transporter ATP-binding subunit%3B PFAM: PF00005%2C PF08402%3B SMART: SM00382%3B PANTHER: PTHR19222;Dbxref=Genbank:YP_001532940.1,GeneID:5712741;gbkey=CDS;gene=potA1;product=spermidine%2Fputrescine import ATP-binding protein;protein_id=YP_001532940.1;transl_table=11
NC_009952.1	RefSeq	gene	1663920	1664726	.	-	.	ID=gene1619;Name=potA1;Dbxref=GeneID:5712742;gbkey=Gene;gene=potA1;locus_tag=Dshi_1598
NC_009952.1	RefSeq	CDS	1663920	1664726	.	-	0	ID=cds1592;Name=YP_001532941.1;Parent=gene1619;Note=SWISSPROT P0AFR9: Inner membrane ABC transporter permease protein ydcV%2C P0AFK6: Spermidine%2Fputrescine transport system permease protein potC%3B COG: COG1177-ABC-type spermidine%2Fputrescine transport system%2C permease component II%3B PFAM: PF00528%3B PROSITE: PS50928%3B associated with spermidine%2Fputrescine transport system;Dbxref=Genbank:YP_001532941.1,GeneID:5712742;gbkey=CDS;product=inner membrane ABC-transporter permease;protein_id=YP_001532941.1;transl_table=11
NC_009952.1	RefSeq	gene	1664723	1665604	.	-	.	ID=gene1620;Name=potB;Dbxref=GeneID:5712743;gbkey=Gene;gene=potB;locus_tag=Dshi_1599
NC_009952.1	RefSeq	CDS	1664723	1665604	.	-	0	ID=cds1593;Name=YP_001532942.1;Parent=gene1620;Note=SWISSPROT P0AFK4: Spermidine%2Fputrescine transport system permease protein potB%3B COG: COG1176-ABC-type spermidine%2Fputrescine transport system%2C permease component I%3B PFAM: pfam00528%3B PROSITE: PS50928;Dbxref=Genbank:YP_001532942.1,GeneID:5712743;gbkey=CDS;gene=potB;product=spermidine%2Fputrescine transport system permease;protein_id=YP_001532942.1;transl_table=11
NC_009952.1	RefSeq	gene	1665720	1666031	.	-	.	ID=gene1621;Name=Dshi_1600;Dbxref=GeneID:5712744;gbkey=Gene;locus_tag=Dshi_1600
NC_009952.1	RefSeq	CDS	1665720	1666031	.	-	0	ID=cds1594;Name=YP_001532943.1;Parent=gene1621;Note=COG: COG2329-Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides%3B PFAM: pfam03992%3B SUPERFAMILY: SSF54909;Dbxref=Genbank:YP_001532943.1,GeneID:5712744;gbkey=CDS;product=monooxygenase;protein_id=YP_001532943.1;transl_table=11
NC_009952.1	RefSeq	gene	1666178	1666672	.	-	.	ID=gene1622;Name=rpsI;Dbxref=GeneID:5712745;gbkey=Gene;gene=rpsI;locus_tag=Dshi_1601
NC_009952.1	RefSeq	CDS	1666178	1666672	.	-	0	ID=cds1595;Name=YP_001532944.1;Parent=gene1622;Note=forms a direct contact with the tRNA during translation;Dbxref=Genbank:YP_001532944.1,GeneID:5712745;gbkey=CDS;gene=rpsI;product=30S ribosomal protein S9;protein_id=YP_001532944.1;transl_table=11
NC_009952.1	RefSeq	gene	1666677	1667135	.	-	.	ID=gene1623;Name=rplM;Dbxref=GeneID:5712746;gbkey=Gene;gene=rplM;locus_tag=Dshi_1602
NC_009952.1	RefSeq	CDS	1666677	1667135	.	-	0	ID=cds1596;Name=YP_001532945.1;Parent=gene1623;Note=in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit;Dbxref=Genbank:YP_001532945.1,GeneID:5712746;gbkey=CDS;gene=rplM;product=50S ribosomal protein L13;protein_id=YP_001532945.1;transl_table=11
NC_009952.1	RefSeq	gene	1667361	1667783	.	-	.	ID=gene1624;Name=Dshi_1603;Dbxref=GeneID:5712747;gbkey=Gene;locus_tag=Dshi_1603
NC_009952.1	RefSeq	CDS	1667361	1667783	.	-	0	ID=cds1597;Name=YP_001532946.1;Parent=gene1624;Note=TIGRFAM: TIGR00369-Phenylacetic acid degradation-related protein%3B COG: COG2050-Uncharacterized protein%2C possibly involved in aromatic compounds catabolism%3B PFAM: PF03061%3B SWISSPROT Q9I644: UPF0152 protein PA0474%2C P76084: Phenylacetic acid degradation protein paaI%3B similar to Phenylacetic acid degradation protein paaI;Dbxref=Genbank:YP_001532946.1,GeneID:5712747;gbkey=CDS;product=putative thioesterase superfamily protein;protein_id=YP_001532946.1;transl_table=11
NC_009952.1	RefSeq	gene	1667840	1668634	.	+	.	ID=gene1625;Name=Dshi_1604;Dbxref=GeneID:5712748;gbkey=Gene;locus_tag=Dshi_1604
NC_009952.1	RefSeq	CDS	1667840	1668634	.	+	0	ID=cds1598;Name=YP_001532947.1;Parent=gene1625;Note=Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA;Dbxref=Genbank:YP_001532947.1,GeneID:5712748;gbkey=CDS;product=enoyl-CoA hydratase;protein_id=YP_001532947.1;transl_table=11
NC_009952.1	RefSeq	gene	1668641	1669249	.	-	.	ID=gene1626;Name=Dshi_1605;Dbxref=GeneID:5712749;gbkey=Gene;locus_tag=Dshi_1605
NC_009952.1	RefSeq	CDS	1668641	1669249	.	-	0	ID=cds1599;Name=YP_001532948.1;Parent=gene1626;Note=COG: COG0741-Soluble lytic murein transglycosylase and related regulatory proteins %28some contain LysM%2Finvasin domains%29%3B PFAM: PF01464;Dbxref=Genbank:YP_001532948.1,GeneID:5712749;gbkey=CDS;product=lytic murein transglycosylase;protein_id=YP_001532948.1;transl_table=11
NC_009952.1	RefSeq	gene	1669410	1669916	.	+	.	ID=gene1627;Name=ssb;Dbxref=GeneID:5712750;gbkey=Gene;gene=ssb;locus_tag=Dshi_1606
NC_009952.1	RefSeq	CDS	1669410	1669916	.	+	0	ID=cds1600;Name=YP_001532949.1;Parent=gene1627;Note=TIGRFAM: TIGR00621%3B COG: COG0629%3B PFAM: pfam00436%3B PANTHER: PTHR10302%3B PROSITE: PS50935%3B SWISSPROT P0AGE0;Dbxref=Genbank:YP_001532949.1,GeneID:5712750;gbkey=CDS;gene=ssb;product=single stranded DNA-binding protein;protein_id=YP_001532949.1;transl_table=11
NC_009952.1	RefSeq	gene	1669966	1671222	.	-	.	ID=gene1628;Name=Dshi_1607;Dbxref=GeneID:5712751;gbkey=Gene;locus_tag=Dshi_1607
NC_009952.1	RefSeq	CDS	1669966	1671222	.	-	0	ID=cds1601;Name=YP_001532950.1;Parent=gene1628;Dbxref=Genbank:YP_001532950.1,GeneID:5712751;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532950.1;transl_table=11
NC_009952.1	RefSeq	gene	1671408	1672559	.	-	.	ID=gene1629;Name=aroB;Dbxref=GeneID:5712752;gbkey=Gene;gene=aroB;locus_tag=Dshi_1608
NC_009952.1	RefSeq	CDS	1671408	1672559	.	-	0	ID=cds1602;Name=YP_001532951.1;Parent=gene1629;Note=catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate%3B functions in aromatic amino acid biosynthesis;Dbxref=Genbank:YP_001532951.1,GeneID:5712752;gbkey=CDS;gene=aroB;product=3-dehydroquinate synthase;protein_id=YP_001532951.1;transl_table=11
NC_009952.1	RefSeq	gene	1672630	1673187	.	-	.	ID=gene1630;Name=aroK;Dbxref=GeneID:5712753;gbkey=Gene;gene=aroK;locus_tag=Dshi_1609
NC_009952.1	RefSeq	CDS	1672630	1673187	.	-	0	ID=cds1603;Name=YP_001532952.1;Parent=gene1630;Note=catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis;Dbxref=Genbank:YP_001532952.1,GeneID:5712753;gbkey=CDS;gene=aroK;product=shikimate kinase;protein_id=YP_001532952.1;transl_table=11
NC_009952.1	RefSeq	gene	1673376	1674959	.	+	.	ID=gene1631;Name=Dshi_1610;Dbxref=GeneID:5712754;gbkey=Gene;locus_tag=Dshi_1610
NC_009952.1	RefSeq	CDS	1673376	1674959	.	+	0	ID=cds1604;Name=YP_001532953.1;Parent=gene1631;Dbxref=Genbank:YP_001532953.1,GeneID:5712754;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532953.1;transl_table=11
NC_009952.1	RefSeq	gene	1674956	1675882	.	+	.	ID=gene1632;Name=xerD;Dbxref=GeneID:5712755;gbkey=Gene;gene=xerD;locus_tag=Dshi_1611
NC_009952.1	RefSeq	CDS	1674956	1675882	.	+	0	ID=cds1605;Name=YP_001532954.1;Parent=gene1632;Note=SWISSPROT: P0A8P8 Tyrosine recombinase xerD%3B COG: COG4974 - Site-specific recombinase XerD%3B PFAM: pfam00589%2C pfam02899%3B SUPERFAMILY: SSF47823%2C SSF56349;Dbxref=Genbank:YP_001532954.1,GeneID:5712755;gbkey=CDS;gene=xerD;product=tyrosine recombinase;protein_id=YP_001532954.1;transl_table=11
NC_009952.1	RefSeq	gene	1675879	1676685	.	-	.	ID=gene1633;Name=xerD;Dbxref=GeneID:5712756;gbkey=Gene;gene=xerD;locus_tag=Dshi_1612
NC_009952.1	RefSeq	CDS	1675879	1676685	.	-	0	ID=cds1606;Name=YP_001532955.1;Parent=gene1633;Note=COG: COG0622 - Predicted phosphoesterase%3B SUPERFAMILY: Metallo-dependent phosphatases%3B Gene3D: %5BPDB%5D Hydrolase;Dbxref=Genbank:YP_001532955.1,GeneID:5712756;gbkey=CDS;product=putative phosphatase;protein_id=YP_001532955.1;transl_table=11
NC_009952.1	RefSeq	gene	1676755	1678056	.	+	.	ID=gene1634;Name=Dshi_1613;Dbxref=GeneID:5712757;gbkey=Gene;locus_tag=Dshi_1613
NC_009952.1	RefSeq	CDS	1676755	1678056	.	+	0	ID=cds1607;Name=YP_001532956.1;Parent=gene1634;Note=SWISSPROT P37908: UPF0053 inner membrane protein yfjD%3B PFAM: pfam01595%2C pfam03471%2C pfam00571%3B PANTHER: PTHR22777;Dbxref=Genbank:YP_001532956.1,GeneID:5712757;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532956.1;transl_table=11
NC_009952.1	RefSeq	gene	1678074	1679633	.	-	.	ID=gene1635;Name=yjgR;Dbxref=GeneID:5712758;gbkey=Gene;gene=yjgR;locus_tag=Dshi_1614
NC_009952.1	RefSeq	CDS	1678074	1679633	.	-	0	ID=cds1608;Name=YP_001532957.1;Parent=gene1635;Note=SWISSPROT P39342: Uncharacterized protein yjgR%3B PFAM: pfam05872%3B SUPERFAMILY: SSF52540%3B Gene3D: G3DSA:3.40.50.300%3B similar to uncharacterized protein yjgR %28E.coli%29;Dbxref=Genbank:YP_001532957.1,GeneID:5712758;gbkey=CDS;gene=yjgR;product=hypothetical protein;protein_id=YP_001532957.1;transl_table=11
NC_009952.1	RefSeq	gene	1680082	1680672	.	+	.	ID=gene1636;Name=Dshi_1615;Dbxref=GeneID:5712759;gbkey=Gene;locus_tag=Dshi_1615
NC_009952.1	RefSeq	CDS	1680082	1680672	.	+	0	ID=cds1609;Name=YP_001532958.1;Parent=gene1636;Note=COG: COG5342 - Invasion protein B%2C involved in pathogenesis%2C PFAM: pfam06776%3B similar to Invasion protein B;Dbxref=Genbank:YP_001532958.1,GeneID:5712759;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532958.1;transl_table=11
NC_009952.1	RefSeq	gene	1680682	1681893	.	-	.	ID=gene1637;Name=Dshi_1616;Dbxref=GeneID:5712760;gbkey=Gene;locus_tag=Dshi_1616
NC_009952.1	RefSeq	CDS	1680682	1681893	.	-	0	ID=cds1610;Name=YP_001532959.1;Parent=gene1637;Note=PANTHER: Polyketide synthase-related%3B COG: COG0304 - 3-oxoacyl-%28acyl-carrier-protein%29 synthase%3B SWISSPROT P04684: Nodulation protein E%2C P0AAI5: 3-oxoacyl-%5Bacyl-carrier-protein%5D synthase 2%3B PFAM: pfam02801%2C pfam00109%3B PROSITE: PS00606;Dbxref=Genbank:YP_001532959.1,GeneID:5712760;gbkey=CDS;product=beta ketoacyl synthase;protein_id=YP_001532959.1;transl_table=11
NC_009952.1	RefSeq	gene	1681897	1682166	.	-	.	ID=gene1638;Name=Dshi_1617;Dbxref=GeneID:5712761;gbkey=Gene;locus_tag=Dshi_1617
NC_009952.1	RefSeq	CDS	1681897	1682166	.	-	0	ID=cds1611;Name=YP_001532960.1;Parent=gene1638;Note=SWISSPROT P0A6A8: Acyl carrier protein%3B TIGRFAM: TIGR00517%3B PFAM: PF00550%3B PROSITE: PS50075%2C PS00012%3B phosphopantetheine attachment site;Dbxref=Genbank:YP_001532960.1,GeneID:5712761;gbkey=CDS;product=acyl carrier protein;protein_id=YP_001532960.1;transl_table=11
NC_009952.1	RefSeq	gene	1682224	1683315	.	-	.	ID=gene1639;Name=lpxD;Dbxref=GeneID:5712762;gbkey=Gene;gene=lpxD;locus_tag=Dshi_1618
NC_009952.1	RefSeq	CDS	1682224	1683315	.	-	0	ID=cds1612;Name=YP_001532961.1;Parent=gene1639;Note=COG: COG1044 - UDP-3-O-%5B3-hydroxymyristoyl%5D glucosamine N-acyltransferase%3B TIGRFAM: TIGR01853%3B PFAM: pfam04613%2C PF00132;Dbxref=Genbank:YP_001532961.1,GeneID:5712762;gbkey=CDS;gene=lpxD;product=UDP-3-O-%5B3-hydroxymyristoyl%5D glucosamine N-acyltransferase;protein_id=YP_001532961.1;transl_table=11
NC_009952.1	RefSeq	gene	1683367	1684977	.	-	.	ID=gene1640;Name=Dshi_1619;Dbxref=GeneID:5712763;gbkey=Gene;locus_tag=Dshi_1619
NC_009952.1	RefSeq	CDS	1683367	1684977	.	-	0	ID=cds1613;Name=YP_001532962.1;Parent=gene1640;Note=COG: COG2989 - Uncharacterized protein conserved in bacteria%3B PFAM: pfam01471%3B SWISSPROT P22525:Uncharacterized protein ycbB%3B related to uncharacterized protein ycbB %28E.coli%29;Dbxref=Genbank:YP_001532962.1,GeneID:5712763;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532962.1;transl_table=11
NC_009952.1	RefSeq	gene	1685275	1685844	.	+	.	ID=gene1641;Name=Dshi_1620;Dbxref=GeneID:5712764;gbkey=Gene;locus_tag=Dshi_1620
NC_009952.1	RefSeq	CDS	1685275	1685844	.	+	0	ID=cds1614;Name=YP_001532963.1;Parent=gene1641;Note=COG: COG3108 - Uncharacterized protein conserved in bacteria%3B PFAM: pfam05951%3B SWISSPROT P0AB06: Uncharacterized protein ycbK%3B similar to uncharcaterized protein ycbK;Dbxref=Genbank:YP_001532963.1,GeneID:5712764;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532963.1;transl_table=11
NC_009952.1	RefSeq	gene	1685849	1686799	.	-	.	ID=gene1642;Name=Dshi_1621;Dbxref=GeneID:5712765;gbkey=Gene;locus_tag=Dshi_1621
NC_009952.1	RefSeq	CDS	1685849	1686799	.	-	0	ID=cds1615;Name=YP_001532964.1;Parent=gene1642;Note=SWISSPROT: 6-phosphofructokinase isozyme 2 %28Phosphofructokinase-2%29 %5BpfkB%5D%3B PROSITE: PS00583%3B PFAM: PF00294%3B SUPERFAMILY: SSF53613;Dbxref=Genbank:YP_001532964.1,GeneID:5712765;gbkey=CDS;product=putative 6-phosphofructokinase isozyme 2;protein_id=YP_001532964.1;transl_table=11
NC_009952.1	RefSeq	gene	1686892	1688406	.	-	.	ID=gene1643;Name=Dshi_1622;Dbxref=GeneID:5712766;gbkey=Gene;locus_tag=Dshi_1622
NC_009952.1	RefSeq	CDS	1686892	1688406	.	-	0	ID=cds1616;Name=YP_001532965.1;Parent=gene1643;Note=SWISSPROT Q99289: Thermolabile hemolysin %5BPrecursor%5D%3B PFAM: PF00353%3B PROSITE: PS00330%3B SPRINT: PR00313 %3B SUPERFAMILY: SSF51120%3B Gene3D: G3DSA:2.150.10.10%3B COG: COG2931%3B Calcium binding;Dbxref=Genbank:YP_001532965.1,GeneID:5712766;gbkey=CDS;product=putative hemolysin;protein_id=YP_001532965.1;transl_table=11
NC_009952.1	RefSeq	gene	1688687	1688763	.	-	.	ID=gene1644;Name=Dshi_6028;Dbxref=GeneID:5712767;gbkey=Gene;locus_tag=Dshi_6028
NC_009952.1	RefSeq	tRNA	1688687	1688763	.	-	.	ID=rna27;Parent=gene1644;Dbxref=GeneID:5712767;codons=31;gbkey=tRNA;product=tRNA-Arg
NC_009952.1	RefSeq	exon	1688687	1688763	.	-	.	ID=id31;Parent=rna27;Dbxref=GeneID:5712767;codons=31;gbkey=tRNA;product=tRNA-Arg
NC_009952.1	RefSeq	gene	1688923	1690143	.	-	.	ID=gene1645;Name=sufS;Dbxref=GeneID:5712768;gbkey=Gene;gene=sufS;locus_tag=Dshi_1623
NC_009952.1	RefSeq	CDS	1688923	1690143	.	-	0	ID=cds1617;Name=YP_001532966.1;Parent=gene1645;Note=SWISSPROT P77444: Cysteine desulfurase. Synonym: Selenocysteine lyase%3B TIGRFAM: TIGR01979%3B COG: COG0520 - Selenocysteine lyase%3B PFAM: PF00266%3B PROSITE: PS00595%3B SUPERFAMILY: SSF53383;Dbxref=Genbank:YP_001532966.1,GeneID:5712768;gbkey=CDS;gene=sufS;product=cysteine desulfurase;protein_id=YP_001532966.1;transl_table=11
NC_009952.1	RefSeq	gene	1690144	1690743	.	-	.	ID=gene1646;Name=Dshi_1624;Dbxref=GeneID:5712769;gbkey=Gene;locus_tag=Dshi_1624
NC_009952.1	RefSeq	CDS	1690144	1690743	.	-	0	ID=cds1618;Name=YP_001532967.1;Parent=gene1646;Note=associated with suf system;Dbxref=Genbank:YP_001532967.1,GeneID:5712769;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532967.1;transl_table=11
NC_009952.1	RefSeq	gene	1690773	1691270	.	-	.	ID=gene1647;Name=Dshi_1625;Dbxref=GeneID:5712770;gbkey=Gene;locus_tag=Dshi_1625
NC_009952.1	RefSeq	CDS	1690773	1691270	.	-	0	ID=cds1619;Name=YP_001532968.1;Parent=gene1647;Note=associated with suf sytem;Dbxref=Genbank:YP_001532968.1,GeneID:5712770;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532968.1;transl_table=11
NC_009952.1	RefSeq	gene	1691270	1692553	.	-	.	ID=gene1648;Name=sufD;Dbxref=GeneID:5712771;gbkey=Gene;gene=sufD;locus_tag=Dshi_1626
NC_009952.1	RefSeq	CDS	1691270	1692553	.	-	0	ID=cds1620;Name=YP_001532969.1;Parent=gene1648;Note=SWISSPROT P77689: Protein sufD%3B COG: COG0719 - ABC-type transport system involved in Fe-S cluster assembly%2C permease component%3B PFAM: pfam01458%3B SUPERFAMILY SSF101960: Stabilizer of iron transporter SufD;Dbxref=Genbank:YP_001532969.1,GeneID:5712771;gbkey=CDS;gene=sufD;product=sufD;protein_id=YP_001532969.1;transl_table=11
NC_009952.1	RefSeq	gene	1692553	1693308	.	-	.	ID=gene1649;Name=sufC;Dbxref=GeneID:5712772;gbkey=Gene;gene=sufC;locus_tag=Dshi_1627
NC_009952.1	RefSeq	CDS	1692553	1693308	.	-	0	ID=cds1621;Name=YP_001532970.1;Parent=gene1649;Note=SWISSPROT P77499: Probable ATP-dependent transporter sufC%3B TIGRFAM: TIGR01978 FeS assembly ATPase SufC%3B PANTHER: PTHR19222:SF6-ABC TRANSPORTER%3B PFAM: PF00005%3B PROSITE: PS00211%2C PS50893%3B SMART: SM00382;Dbxref=Genbank:YP_001532970.1,GeneID:5712772;gbkey=CDS;gene=sufC;product=ATP-dependent transporter;protein_id=YP_001532970.1;transl_table=11
NC_009952.1	RefSeq	gene	1693326	1693640	.	-	.	ID=gene1650;Name=Dshi_1628;Dbxref=GeneID:5712773;gbkey=Gene;locus_tag=Dshi_1628
NC_009952.1	RefSeq	CDS	1693326	1693640	.	-	0	ID=cds1622;Name=YP_001532971.1;Parent=gene1650;Note=PFAM: PF01906%3B COG: COG0393 - Uncharacterized conserved protein;Dbxref=Genbank:YP_001532971.1,GeneID:5712773;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532971.1;transl_table=11
NC_009952.1	RefSeq	gene	1693637	1693837	.	-	.	ID=gene1651;Name=Dshi_1629;Dbxref=GeneID:5712774;gbkey=Gene;locus_tag=Dshi_1629
NC_009952.1	RefSeq	CDS	1693637	1693837	.	-	0	ID=cds1623;Name=YP_001532972.1;Parent=gene1651;Dbxref=Genbank:YP_001532972.1,GeneID:5712774;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532972.1;transl_table=11
NC_009952.1	RefSeq	gene	1694332	1694541	.	-	.	ID=gene1652;Name=Dshi_1630;Dbxref=GeneID:5712775;gbkey=Gene;locus_tag=Dshi_1630
NC_009952.1	RefSeq	CDS	1694332	1694541	.	-	0	ID=cds1624;Name=YP_001532973.1;Parent=gene1652;Dbxref=Genbank:YP_001532973.1,GeneID:5712775;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532973.1;transl_table=11
NC_009952.1	RefSeq	gene	1694568	1696079	.	-	.	ID=gene1653;Name=sufB;Dbxref=GeneID:5712776;gbkey=Gene;gene=sufB;locus_tag=Dshi_1631
NC_009952.1	RefSeq	CDS	1694568	1696079	.	-	0	ID=cds1625;Name=YP_001532974.1;Parent=gene1653;Note=with SufCD activates cysteine desulfurase SufS;Dbxref=Genbank:YP_001532974.1,GeneID:5712776;gbkey=CDS;gene=sufB;product=cysteine desulfurase activator complex subunit SufB;protein_id=YP_001532974.1;transl_table=11
NC_009952.1	RefSeq	gene	1696137	1697183	.	-	.	ID=gene1654;Name=nifS;Dbxref=GeneID:5712777;gbkey=Gene;gene=nifS;locus_tag=Dshi_1632
NC_009952.1	RefSeq	CDS	1696137	1697183	.	-	0	ID=cds1626;Name=YP_001532975.1;Parent=gene1654;Note=SWISSPROT P05341: Cysteine desulfurase%3B COG: COG1104 - Cysteine sulfinate desulfinase%2Fcysteine desulfurase and related enzymes%3B PANTHER: Cysteine desulforase%3B PFAM: PF00266%3B Gene3D: G3DSA:3.40.640.10%3B alternative gene name: iscS;Dbxref=Genbank:YP_001532975.1,GeneID:5712777;gbkey=CDS;gene=nifS;product=cysteine desulfurase;protein_id=YP_001532975.1;transl_table=11
NC_009952.1	RefSeq	gene	1697195	1697683	.	-	.	ID=gene1655;Name=iscR;Dbxref=GeneID:5712778;gbkey=Gene;gene=iscR;locus_tag=Dshi_1633
NC_009952.1	RefSeq	CDS	1697195	1697683	.	-	0	ID=cds1627;Name=YP_001532976.1;Parent=gene1655;Note=SWISSPROT P0AGK8: HTH-type transcriptional regulator iscR%3B TIGRFAM: TIGR00738 rrf2 family protein %28putative transcriptional regulator%29%3B COG: COG1959 - Predicted transcriptional regulator%3B PFAM: PF02082%3B PROSITE: PS51197%3B SUPERFAMILY: SSF46785;Dbxref=Genbank:YP_001532976.1,GeneID:5712778;gbkey=CDS;gene=iscR;product=HTH-type transcriptional regulator;protein_id=YP_001532976.1;transl_table=11
NC_009952.1	RefSeq	gene	1697855	1698508	.	+	.	ID=gene1656;Name=Dshi_1634;Dbxref=GeneID:5712779;gbkey=Gene;locus_tag=Dshi_1634
NC_009952.1	RefSeq	CDS	1697855	1698508	.	+	0	ID=cds1628;Name=YP_001532977.1;Parent=gene1656;Note=COG: COG2945 - Predicted hydrolase of the alpha%2Fbeta superfamily%3B PFAM: pfam00561%3B SUPERFAMILY: SSF53474;Dbxref=Genbank:YP_001532977.1,GeneID:5712779;gbkey=CDS;product=putative alpha%2Fbeta hydrolase;protein_id=YP_001532977.1;transl_table=11
NC_009952.1	RefSeq	gene	1698511	1698726	.	+	.	ID=gene1657;Name=Dshi_1635;Dbxref=GeneID:5712780;gbkey=Gene;locus_tag=Dshi_1635
NC_009952.1	RefSeq	CDS	1698511	1698726	.	+	0	ID=cds1629;Name=YP_001532978.1;Parent=gene1657;Dbxref=Genbank:YP_001532978.1,GeneID:5712780;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532978.1;transl_table=11
NC_009952.1	RefSeq	gene	1698812	1699540	.	+	.	ID=gene1658;Name=Dshi_1636;Dbxref=GeneID:5712781;gbkey=Gene;locus_tag=Dshi_1636
NC_009952.1	RefSeq	CDS	1698812	1699540	.	+	0	ID=cds1630;Name=YP_001532979.1;Parent=gene1658;Note=PFAM: pfam01988%3B COG: COG1814 - Uncharacterized membrane protein;Dbxref=Genbank:YP_001532979.1,GeneID:5712781;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532979.1;transl_table=11
NC_009952.1	RefSeq	gene	1699686	1700312	.	+	.	ID=gene1659;Name=Dshi_1637;Dbxref=GeneID:5712782;gbkey=Gene;locus_tag=Dshi_1637
NC_009952.1	RefSeq	CDS	1699686	1700312	.	+	0	ID=cds1631;Name=YP_001532980.1;Parent=gene1659;Note=PFAM: PF02588%3B COG: COG1284 - Uncharacterized conserved protein;Dbxref=Genbank:YP_001532980.1,GeneID:5712782;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532980.1;transl_table=11
NC_009952.1	RefSeq	gene	1700339	1700668	.	+	.	ID=gene1660;Name=emrE;Dbxref=GeneID:5712783;gbkey=Gene;gene=emrE;locus_tag=Dshi_1638
NC_009952.1	RefSeq	CDS	1700339	1700668	.	+	0	ID=cds1632;Name=YP_001532981.1;Parent=gene1660;Note=SUPERFAMILY: Multidrug resistance efflux transporter EmrE%3B SWISSPROT P23895: Multidrug transporter emrE%3B PFAM: PF00893%3B SUPERFAMILY: SSF103481;Dbxref=Genbank:YP_001532981.1,GeneID:5712783;gbkey=CDS;gene=emrE;product=efflux-multidrug resistance protein;protein_id=YP_001532981.1;transl_table=11
NC_009952.1	RefSeq	gene	1700730	1701272	.	+	.	ID=gene1661;Name=Dshi_1639;Dbxref=GeneID:5713204;gbkey=Gene;locus_tag=Dshi_1639
NC_009952.1	RefSeq	CDS	1700730	1701272	.	+	0	ID=cds1633;Name=YP_001532982.1;Parent=gene1661;Dbxref=Genbank:YP_001532982.1,GeneID:5713204;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532982.1;transl_table=11
NC_009952.1	RefSeq	gene	1701269	1701574	.	+	.	ID=gene1662;Name=Dshi_1640;Dbxref=GeneID:5713205;gbkey=Gene;locus_tag=Dshi_1640
NC_009952.1	RefSeq	CDS	1701269	1701574	.	+	0	ID=cds1634;Name=YP_001532983.1;Parent=gene1662;Note=PROSITE: PS51257;Dbxref=Genbank:YP_001532983.1,GeneID:5713205;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532983.1;transl_table=11
NC_009952.1	RefSeq	gene	1701587	1701880	.	-	.	ID=gene1663;Name=Dshi_1641;Dbxref=GeneID:5713206;gbkey=Gene;locus_tag=Dshi_1641
NC_009952.1	RefSeq	CDS	1701587	1701880	.	-	0	ID=cds1635;Name=YP_001532984.1;Parent=gene1663;Note=PFAM: PF07045;Dbxref=Genbank:YP_001532984.1,GeneID:5713206;gbkey=CDS;product=hypothetical protein;protein_id=YP_001532984.1;transl_table=11
NC_009952.1	RefSeq	gene	1701885	1704548	.	-	.	ID=gene1664;Name=alaS;Dbxref=GeneID:5713207;gbkey=Gene;gene=alaS;locus_tag=Dshi_1642
NC_009952.1	RefSeq	CDS	1701885	1704548	.	-	0	ID=cds1636;Name=YP_001532985.1;Parent=gene1664;Note=Catalyzes a two-step reaction%2C first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA;Dbxref=Genbank:YP_001532985.1,GeneID:5713207;gbkey=CDS;gene=alaS;product=alanyl-tRNA synthetase;protein_id=YP_001532985.1;transl_table=11
NC_009952.1	RefSeq	gene	1704693	1705760	.	-	.	ID=gene1665;Name=recA;Dbxref=GeneID:5713208;gbkey=Gene;gene=recA;locus_tag=Dshi_1643
NC_009952.1	RefSeq	CDS	1704693	1705760	.	-	0	ID=cds1637;Name=YP_001532986.1;Parent=gene1665;Note=catalyzes the hydrolysis of ATP in the presence of single-stranded DNA%2C the ATP-dependent uptake of single-stranded DNA by duplex DNA%2C and the ATP-dependent hybridization of homologous single-stranded DNAs;Dbxref=Genbank:YP_001532986.1,GeneID:5713208;gbkey=CDS;gene=recA;product=recombinase A;protein_id=YP_001532986.1;transl_table=11
NC_009952.1	RefSeq	gene	1705935	1708274	.	-	.	ID=gene1666;Name=Dshi_1644;Dbxref=GeneID:5713209;gbkey=Gene;locus_tag=Dshi_1644
NC_009952.1	RefSeq	CDS	1705935	1708274	.	-	0	ID=cds1638;Name=YP_001532987.1;Parent=gene1666;Note=COG: COG4191 - Signal transduction histidine kinase regulating C4-dicarboxylate transport system%3B SMART: SM0009%2C SM00448%2C SM00387%2C SM00388%3B PROSITE: PS50110%2C PS50109%3B PFAM: PF00072%2C PF02518%2C PF00512%3B SPRINTS: PR00344%3B SUPERFAMILY: SSF55874;Dbxref=Genbank:YP_001532987.1,GeneID:5713209;gbkey=CDS;product=histidine kinase;protein_id=YP_001532987.1;transl_table=11
NC_009952.1	RefSeq	gene	1708348	1709526	.	-	.	ID=gene1667;Name=rsmB2;Dbxref=GeneID:5713210;gbkey=Gene;gene=rsmB2;locus_tag=Dshi_1645
NC_009952.1	RefSeq	CDS	1708348	1709526	.	-	0	ID=cds1639;Name=YP_001532988.1;Parent=gene1667;Note=SWISSPROT P36929: Ribosomal RNA small subunit methyltransferas B %2F rRNA %28cytosine-C%285%29-%29-methyltransferase%3B PFAM: PF01189%3B SUPERFAMILY: SSF53335;Dbxref=Genbank:YP_001532988.1,GeneID:5713210;gbkey=CDS;gene=rsmB2;product=rRNA %28cytosine-C%285%29-%29-methyltransferase;protein_id=YP_001532988.1;transl_table=11
NC_009952.1	RefSeq	gene	1709530	1710984	.	-	.	ID=gene1668;Name=guaB;Dbxref=GeneID:5713211;gbkey=Gene;gene=guaB;locus_tag=Dshi_1646
NC_009952.1	RefSeq	CDS	1709530	1710984	.	-	0	ID=cds1640;Name=YP_001532989.1;Parent=gene1668;Note=TIGRFAM: TIGR01302 inosine-5-monophosphate dehydrogenase%3B COG: COG0516 - IMP dehydrogenase%2FGMP reductase%3B PANTHER: INOSINE-5-MONOPHOSPHATE DEHYDROGENASE %28PTHR11911:SF6%29%3B PFAM: PF00478%2C PF00571%3B SMART: SM00116;Dbxref=Genbank:YP_001532989.1,GeneID:5713211;gbkey=CDS;gene=guaB;product=inosine-5%27-monophosphate dehydrogenase;protein_id=YP_001532989.1;transl_table=11
NC_009952.1	RefSeq	gene	1711064	1711846	.	-	.	ID=gene1669;Name=hpcH;Dbxref=GeneID:5713212;gbkey=Gene;gene=hpcH;locus_tag=Dshi_1647
NC_009952.1	RefSeq	CDS	1711064	1711846	.	-	0	ID=cds1641;Name=YP_001532990.1;Parent=gene1669;Note=SWISSPROT Q47098: 2%2C4-dihydroxyhept-2-ene-1%2C7-dioic acid aldolase%3B PFAM: PF03328%3B Gene3D: G3DSA:3.20.20.60%3B SUPERFAMILY: SSF51621;Dbxref=Genbank:YP_001532990.1,GeneID:5713212;gbkey=CDS;gene=hpcH;product=2%2C4-dihydroxyhept-2-ene-1%2C7-dioic acid aldolase;protein_id=YP_001532990.1;transl_table=11
NC_009952.1	RefSeq	gene	1712121	1713242	.	-	.	ID=gene1670;Name=malK;Dbxref=GeneID:5713213;gbkey=Gene;gene=malK;locus_tag=Dshi_1648
NC_009952.1	RefSeq	CDS	1712121	1713242	.	-	0	ID=cds1642;Name=YP_001532991.1;Parent=gene1670;Note=SWISSPROT P68187: Maltose%2Fmaltodextrin import ATP-binding protein malK%3B COG: COG3839 - ABC-type sugar transport systems%2C ATPase components%3B PFAM: PF00005%2C PF08402%3B SMART: SM00382%3B SUPERFAMILY: SSF50331;Dbxref=Genbank:YP_001532991.1,GeneID:5713213;gbkey=CDS;gene=malK;product=maltose%2Fmaltodextrin import ATP-binding protein;protein_id=YP_001532991.1;transl_table=11
NC_009952.1	RefSeq	gene	1713282	1714940	.	-	.	ID=gene1671;Name=Dshi_1649;Dbxref=GeneID:5713214;gbkey=Gene;locus_tag=Dshi_1649
NC_009952.1	RefSeq	CDS	1713282	1714940	.	-	0	ID=cds1643;Name=YP_001532992.1;Parent=gene1671;Note=SWISSPROT Q9Z3R8: Probable alpha-glucosidase%3B COG: COG0366 - Glycosidases%3B PFAM: PF00128%3B SMART: SM00642%3B SUPERFAMILY: SSF51011%2C SSF51445;Dbxref=Genbank:YP_001532992.1,GeneID:5713214;gbkey=CDS;product=alpha-glucosidase;protein_id=YP_001532992.1;transl_table=11
NC_009952.1	RefSeq	gene	1714954	1716111	.	-	.	ID=gene1672;Name=Dshi_1650;Dbxref=GeneID:5713215;gbkey=Gene;locus_tag=Dshi_1650
NC_009952.1	RefSeq	CDS	1714954	1716111	.	-	0	ID=cds1644;Name=YP_001532993.1;Parent=gene1672;Note=SWISSPROT Q9Z3R7: Alpha-glucoside transport system permease protein aglG%2C P77716: Inner membrane ABC transporter permease protein ycjP%3B PFAM: PF00528%3B PROSITE: PS50928%3B associated with alpha-glucoside transport system;Dbxref=Genbank:YP_001532993.1,GeneID:5713215;gbkey=CDS;product=inner membrane ABC transporter permease;protein_id=YP_001532993.1;transl_table=11
NC_009952.1	RefSeq	gene	1716129	1717133	.	-	.	ID=gene1673;Name=Dshi_1651;Dbxref=GeneID:5713216;gbkey=Gene;locus_tag=Dshi_1651
NC_009952.1	RefSeq	CDS	1716129	1717133	.	-	0	ID=cds1645;Name=YP_001532994.1;Parent=gene1673;Note=SWISSPROT P0AFR7: Inner membrane ABC transporter permease protein ycjO%2C Q9Z3R6: Alpha-glucoside transport system permease protein aglF%3B PFAM: PF00528%3B PROSITE: PS50928%3B associated with alpha-glucoside transport system;Dbxref=Genbank:YP_001532994.1,GeneID:5713216;gbkey=CDS;product=inner membrane ABC transporter permease;protein_id=YP_001532994.1;transl_table=11
NC_009952.1	RefSeq	gene	1717206	1718564	.	-	.	ID=gene1674;Name=Dshi_1652;Dbxref=GeneID:5713217;gbkey=Gene;locus_tag=Dshi_1652
NC_009952.1	RefSeq	CDS	1717206	1718564	.	-	0	ID=cds1646;Name=YP_001532995.1;Parent=gene1674;Note=SWISSPROT Q9Z3R5: Alpha-glucosides-binding periplasmic protein aglE %5BPrecursor%5D%3B COG: COG1653 - ABC-type sugar transport system%2C periplasmic component%3B PFAM: PF01547%3B associated with alpha-glucoside transport system;Dbxref=Genbank:YP_001532995.1,GeneID:5713217;gbkey=CDS;product=putative solute-binding protein 1 family;protein_id=YP_001532995.1;transl_table=11
NC_009952.1	RefSeq	gene	1718787	1719851	.	+	.	ID=gene1675;Name=Dshi_1653;Dbxref=GeneID:5713218;gbkey=Gene;locus_tag=Dshi_1653
NC_009952.1	RefSeq	CDS	1718787	1719851	.	+	0	ID=cds1647;Name=YP_001532996.1;Parent=gene1675;Note=SWISSPROT Q9Z3R4: HTH-type transcriptional regulator aglR%2C P21867: HTH-type transcriptional regulator rafR%3B COG: COG1609 - Transcriptional regulators%3B PFAM: PF00532%3B SMART: SM00354%3B PROSITE: PS50932;Dbxref=Genbank:YP_001532996.1,GeneID:5713218;gbkey=CDS;product=HTH-type transcriptional regulator;protein_id=YP_001532996.1;transl_table=11
NC_009952.1	RefSeq	gene	1719861	1721168	.	+	.	ID=gene1676;Name=bglA;Dbxref=GeneID:5713219;gbkey=Gene;gene=bglA;locus_tag=Dshi_1654
NC_009952.1	RefSeq	CDS	1719861	1721168	.	+	0	ID=cds1648;Name=YP_001532997.1;Parent=gene1676;Note=SWISSPROT Q08638: Beta-glucosidase A%3B COG: COG2723 - Beta-glucosidase%2F6-phospho-beta-glucosidase%2Fbeta-galactosidase%3B PANTHER: GLYCOSIDE HYDROLASES %28PTHR10353%29%3B PFAM: PF00232%3B SPRINT: PR00131%3B PROSITE: PS00572;Dbxref=Genbank:YP_001532997.1,GeneID:5713219;gbkey=CDS;gene=bglA;product=beta-glucosidase A;protein_id=YP_001532997.1;transl_table=11
NC_009952.1	RefSeq	gene	1721208	1722179	.	+	.	ID=gene1677;Name=glk;Dbxref=GeneID:5713220;gbkey=Gene;gene=glk;locus_tag=Dshi_1655
NC_009952.1	RefSeq	CDS	1721208	1722179	.	+	0	ID=cds1649;Name=YP_001532998.1;Parent=gene1677;Note=SWISSPROT P64254: Glucokinase%3B TIGRFAM: TIGR00749 glucokinase%2C proteobacterial type%3B COG: COG0837%3B PFAM: PF02685%3B SUPERFAMILY: SSF53067;Dbxref=Genbank:YP_001532998.1,GeneID:5713220;gbkey=CDS;gene=glk;product=glucokinase;protein_id=YP_001532998.1;transl_table=11
NC_009952.1	RefSeq	gene	1722176	1723027	.	-	.	ID=gene1678;Name=glk;Dbxref=GeneID:5713221;gbkey=Gene;gene=glk;locus_tag=Dshi_1656
NC_009952.1	RefSeq	CDS	1722176	1723027	.	-	0	ID=cds1650;Name=YP_001532999.1;Parent=gene1678;Note=SWISSPROT Q55282: Manganese transport system membrane protein mntB%2C P44660: Probable iron transport system membrane protein HI0359%3B COG: COG1108 - ABC-type Mn2%2B%2FZn2%2B transport systems%2C permease components%3B PFAM: pfam00950%3B SUPERFAMILY: SSF81345;Dbxref=Genbank:YP_001532999.1,GeneID:5713221;gbkey=CDS;product=ABC-3 metal transporter;protein_id=YP_001532999.1;transl_table=11
NC_009952.1	RefSeq	gene	1723024	1723923	.	-	.	ID=gene1679;Name=Dshi_1657;Dbxref=GeneID:5713222;gbkey=Gene;locus_tag=Dshi_1657
NC_009952.1	RefSeq	CDS	1723024	1723923	.	-	0	ID=cds1651;Name=YP_001533000.1;Parent=gene1679;Note=SWISSPROT Q55282: Manganese transport system membrane protein mntB%2C P44661: Probable iron transport system membrane protein HI0360%3B COG: COG1108 - ABC-type Mn2%2B%2FZn2%2B transport systems%2C permease components%3B PFAM: pfam00950%3B SUPERFAMILY: SSF81345;Dbxref=Genbank:YP_001533000.1,GeneID:5713222;gbkey=CDS;product=ABC-3 metal transporter;protein_id=YP_001533000.1;transl_table=11
NC_009952.1	RefSeq	gene	1723920	1724816	.	-	.	ID=gene1680;Name=Dshi_1658;Dbxref=GeneID:5713223;gbkey=Gene;locus_tag=Dshi_1658
NC_009952.1	RefSeq	CDS	1723920	1724816	.	-	0	ID=cds1652;Name=YP_001533001.1;Parent=gene1680;Note=SWISSPROT P15031: Iron%28III%29 dicitrate transport ATP-binding protein fecE%2C Q55281: Manganese transport system ATP-binding protein mntA%2C P44662: Probable iron transport system ATP-binding protein HI0361%3B COG: COG1121 - ABC-type Mn%2FZn transport systems%2C ATPase component%3B PFAM: PF00005%3B PROSITE: PS00211%2C PS50893%3B SMART: SM00382%3B SUPERFAMILY: SSF52540%3B Gene3D: G3DSA:3.40.50.300;Dbxref=Genbank:YP_001533001.1,GeneID:5713223;gbkey=CDS;product=metal transport system ATP-binding protein;protein_id=YP_001533001.1;transl_table=11
NC_009952.1	RefSeq	gene	1724839	1725729	.	-	.	ID=gene1681;Name=Dshi_1659;Dbxref=GeneID:5713224;gbkey=Gene;locus_tag=Dshi_1659
NC_009952.1	RefSeq	CDS	1724839	1725729	.	-	0	ID=cds1653;Name=YP_001533002.1;Parent=gene1681;Note=SWISSPROT Q57449: Uncharacterized periplasmic iron-binding protein HI0362%2C P31304: Manganese ABC transporter substrate-binding lipoprotein %5BPrecursor%5D%3B COG: COG0803 - ABC-type metal ion transport system%2C periplasmic component%2Fsurface adhesin%3B PFAM: PF01297%3B SPRINT: PR00690%2C PR00691%3B SUPERFAMILY: SSF53807%3B Gene3D: G3DSA:3.40.50.1980;Dbxref=Genbank:YP_001533002.1,GeneID:5713224;gbkey=CDS;product=metal ABC transporter substrate-binding lipoprotein;protein_id=YP_001533002.1;transl_table=11
NC_009952.1	RefSeq	gene	1725859	1726311	.	-	.	ID=gene1682;Name=Dshi_1660;Dbxref=GeneID:5713225;gbkey=Gene;locus_tag=Dshi_1660
NC_009952.1	RefSeq	CDS	1725859	1726311	.	-	0	ID=cds1654;Name=YP_001533003.1;Parent=gene1682;Note=TIGRFAM: TIGR00738%3B PFAM: PF02082%3B SUPERFAMILY: SSF46785;Dbxref=Genbank:YP_001533003.1,GeneID:5713225;gbkey=CDS;product=transcriptional regulator;protein_id=YP_001533003.1;transl_table=11
NC_009952.1	RefSeq	gene	1726594	1727178	.	+	.	ID=gene1683;Name=Dshi_1661;Dbxref=GeneID:5713226;gbkey=Gene;locus_tag=Dshi_1661
NC_009952.1	RefSeq	CDS	1726594	1727178	.	+	0	ID=cds1655;Name=YP_001533004.1;Parent=gene1683;Note=COG: COG3707 - Response regulator with putative antiterminator output domain%3B PFAM: PF00072%2C PF03861%3B SUPERFAMILY: SSF52172;Dbxref=Genbank:YP_001533004.1,GeneID:5713226;gbkey=CDS;product=transcription antitermination regulatory protein;protein_id=YP_001533004.1;transl_table=11
NC_009952.1	RefSeq	gene	1727175	1728353	.	+	.	ID=gene1684;Name=Dshi_1662;Dbxref=GeneID:5713227;gbkey=Gene;locus_tag=Dshi_1662
NC_009952.1	RefSeq	CDS	1727175	1728353	.	+	0	ID=cds1656;Name=YP_001533005.1;Parent=gene1684;Note=COG: COG0715 - ABC-type nitrate%2Fsulfonate%2Fbicarbonate transport systems%2C periplasmic components%3B SUPERFAMILY: SSF53850%3B associated with nitrate transport system;Dbxref=Genbank:YP_001533005.1,GeneID:5713227;gbkey=CDS;product=periplasmic-binding protein-like II;protein_id=YP_001533005.1;transl_table=11
NC_009952.1	RefSeq	gene	1728617	1729984	.	+	.	ID=gene1685;Name=Dshi_1663;Dbxref=GeneID:5713228;gbkey=Gene;locus_tag=Dshi_1663
NC_009952.1	RefSeq	CDS	1728617	1729984	.	+	0	ID=cds1657;Name=YP_001533006.1;Parent=gene1685;Note=COG: COG0715 - ABC-type nitrate%2Fsulfonate%2Fbicarbonate transport systems%2C periplasmic components%3B SUPERFAMILY: SSF53850%3B associated with nitrate transport system;Dbxref=Genbank:YP_001533006.1,GeneID:5713228;gbkey=CDS;product=periplasmic-binding protein-like II;protein_id=YP_001533006.1;transl_table=11
NC_009952.1	RefSeq	gene	1730124	1731206	.	+	.	ID=gene1686;Name=Dshi_1664;Dbxref=GeneID:5713229;gbkey=Gene;locus_tag=Dshi_1664
NC_009952.1	RefSeq	CDS	1730124	1731206	.	+	0	ID=cds1658;Name=YP_001533007.1;Parent=gene1686;Note=COG: COG0600 - ABC-type nitrate%2Fsulfonate%2Fbicarbonate transport system%2C permease component%3B associated with nitrate transport system;Dbxref=Genbank:YP_001533007.1,GeneID:5713229;gbkey=CDS;product=putative ABC transporter permease;protein_id=YP_001533007.1;transl_table=11
NC_009952.1	RefSeq	gene	1731213	1732898	.	+	.	ID=gene1687;Name=Dshi_1665;Dbxref=GeneID:5713230;gbkey=Gene;locus_tag=Dshi_1665
NC_009952.1	RefSeq	CDS	1731213	1732898	.	+	0	ID=cds1659;Name=YP_001533008.1;Parent=gene1687;Note=TIGRFAM: TIGR01184 nitrate transport ATP-binding subunits C and D%3B COG: COG1116 - ABC-type nitrate%2Fsulfonate%2Fbicarbonate transport system%2C ATPase component%3B PFAM: PF00005%3B SMART: SM00382%3B SUPERFAMILY: SSF52540%3B Gene3D: G3DSA:3.40.50.300%3B nitrate transport ATP binding subunits C and D;Dbxref=Genbank:YP_001533008.1,GeneID:5713230;gbkey=CDS;product=ABC transporter;protein_id=YP_001533008.1;transl_table=11
NC_009952.1	RefSeq	gene	1733027	1733473	.	+	.	ID=gene1688;Name=Dshi_1666;Dbxref=GeneID:5713231;gbkey=Gene;locus_tag=Dshi_1666
NC_009952.1	RefSeq	CDS	1733027	1733473	.	+	0	ID=cds1660;Name=YP_001533009.1;Parent=gene1688;Note=COG: COG1017 - Hemoglobin-like flavoprotein%3B PFAM: PF00042-Globin%3B SUPERFAMILY: Globin-like SSF46458%3B Gene3D: G3DSA:1.10.490.10%3B SWISSPROT P04252: Bacterial hemoglobin;Dbxref=Genbank:YP_001533009.1,GeneID:5713231;gbkey=CDS;product=putative flavohemoglobin;protein_id=YP_001533009.1;transl_table=11
NC_009952.1	RefSeq	gene	1733528	1735960	.	+	.	ID=gene1689;Name=nasD;Dbxref=GeneID:5713232;gbkey=Gene;gene=nasD;locus_tag=Dshi_1667
NC_009952.1	RefSeq	CDS	1733528	1735960	.	+	0	ID=cds1661;Name=YP_001533010.1;Parent=gene1689;Note=SWISSPROT P42435: Nitrite reductase %5BNAD%28P%29H%5D%3B TIGRFAM: TIGR02374 nitrite reductase %5BNAD%28P%29H%5D%2C large subunit%3B COG: COG1251 - NAD%28P%29H-nitrite reductase%3B PFAM: pfam00070%2C pfam01077%2C pfam03460%2C pfam04324;Dbxref=Genbank:YP_001533010.1,GeneID:5713232;gbkey=CDS;gene=nasD;product=nitrite reductase %5BNAD%28P%29H%5D large subunit;protein_id=YP_001533010.1;transl_table=11
NC_009952.1	RefSeq	gene	1735957	1736298	.	+	.	ID=gene1690;Name=nasE;Dbxref=GeneID:5713233;gbkey=Gene;gene=nasE;locus_tag=Dshi_1668
NC_009952.1	RefSeq	CDS	1735957	1736298	.	+	0	ID=cds1662;Name=YP_001533011.1;Parent=gene1690;Note=SWISSPROT P42436: assimilatory nitrite reductase %5BNAD%28P%29H%5D%2C small subunit%3B TIGRFAM: TIGR02378 nitrite reductase %5BNAD%28P%29H%5D%2C small subunit%3B COG: COG2146 - Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases;Dbxref=Genbank:YP_001533011.1,GeneID:5713233;gbkey=CDS;gene=nasE;product=assimilatory nitrite reductase %5BNAD%28P%29H%5D small subunit;protein_id=YP_001533011.1;transl_table=11
NC_009952.1	RefSeq	gene	1736304	1738925	.	+	.	ID=gene1691;Name=nasA;Dbxref=GeneID:5713234;gbkey=Gene;gene=nasA;locus_tag=Dshi_1669
NC_009952.1	RefSeq	CDS	1736304	1738925	.	+	0	ID=cds1663;Name=YP_001533012.1;Parent=gene1691;Note=SWISSPROT Q06457: Nitrate reductase%3B COG: COG3383 - Uncharacterized anaerobic dehydrogenase%3B PFAM: pfam00384%2C pfam01568%2C pfam04324%2C pfam04879;Dbxref=Genbank:YP_001533012.1,GeneID:5713234;gbkey=CDS;gene=nasA;product=nitrate reductase;protein_id=YP_001533012.1;transl_table=11
NC_009952.1	RefSeq	gene	1738922	1739893	.	+	.	ID=gene1692;Name=nasA;Dbxref=GeneID:5713235;gbkey=Gene;gene=nasA;locus_tag=Dshi_1670
NC_009952.1	RefSeq	CDS	1738922	1739893	.	+	0	ID=cds1664;Name=YP_001533013.1;Parent=gene1692;Note=SWISSPROT Q8R9M6: Anthranilate phosphoribosyltransferase%3B COG: COG0547 - Anthranilate phosphoribosyltransferase%3B PFAM: PF02885%3B Gene3D: G3DSA:3.40.1030.10%3B SUPERFAMILY: SSF47648%2C SSF52418%3B PANTHER: PTHR11922;Dbxref=Genbank:YP_001533013.1,GeneID:5713235;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533013.1;transl_table=11
NC_009952.1	RefSeq	gene	1739910	1741304	.	+	.	ID=gene1693;Name=cysG;Dbxref=GeneID:5713236;gbkey=Gene;gene=cysG;locus_tag=Dshi_1671
NC_009952.1	RefSeq	CDS	1739910	1741304	.	+	0	ID=cds1665;Name=YP_001533014.1;Parent=gene1693;Note=SWISSPROT P0AEA8: Siroheme synthase%3B TIGRFAM: TIGR01470%2C TIGR01469%3B PFAM: PF00590%3B Gene3D: G3DSA:3.40.1010.10%2C G3DSA:3.30.950.10;Dbxref=Genbank:YP_001533014.1,GeneID:5713236;gbkey=CDS;gene=cysG;product=siroheme synthase;protein_id=YP_001533014.1;transl_table=11
NC_009952.1	RefSeq	gene	1741348	1742121	.	-	.	ID=gene1694;Name=Dshi_1672;Dbxref=GeneID:5713237;gbkey=Gene;locus_tag=Dshi_1672
NC_009952.1	RefSeq	CDS	1741348	1742121	.	-	0	ID=cds1666;Name=YP_001533015.1;Parent=gene1694;Note=PANTHER: PTHR10920-Ribosomal RNA methyltransferase%3B PIR: PIRSF005461- 23S riosomal methyltransferase%3B PFAM: PF01728;Dbxref=Genbank:YP_001533015.1,GeneID:5713237;gbkey=CDS;product=ribosomal RNA methyltransferase;protein_id=YP_001533015.1;transl_table=11
NC_009952.1	RefSeq	gene	1742093	1743274	.	-	.	ID=gene1695;Name=Dshi_1673;Dbxref=GeneID:5713238;gbkey=Gene;locus_tag=Dshi_1673
NC_009952.1	RefSeq	CDS	1742093	1743274	.	-	0	ID=cds1667;Name=YP_001533016.1;Parent=gene1695;Note=COG: COG0248 - Exopolyphosphatase%3B SWISSPROT P25552: Guanosine-5-triphosphate%2C3-diphosphate pyrophosphatase%3B PFAM: PF02541%3B Gene3D: G3DSA:3.30.420.150%2C G3DSA:3.30.420.40%3B SUPERFAMILY: SSF53067;Dbxref=Genbank:YP_001533016.1,GeneID:5713238;gbkey=CDS;product=phosphatase;protein_id=YP_001533016.1;transl_table=11
NC_009952.1	RefSeq	gene	1743527	1743829	.	+	.	ID=gene1696;Name=Dshi_1674;Dbxref=GeneID:5713239;gbkey=Gene;locus_tag=Dshi_1674
NC_009952.1	RefSeq	CDS	1743527	1743829	.	+	0	ID=cds1668;Name=YP_001533017.1;Parent=gene1696;Dbxref=Genbank:YP_001533017.1,GeneID:5713239;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533017.1;transl_table=11
NC_009952.1	RefSeq	gene	1743856	1744782	.	+	.	ID=gene1697;Name=Dshi_1675;Dbxref=GeneID:5713240;gbkey=Gene;locus_tag=Dshi_1675
NC_009952.1	RefSeq	CDS	1743856	1744782	.	+	0	ID=cds1669;Name=YP_001533018.1;Parent=gene1697;Note=COG:COG0685%2C Gene3D: G3DSA:3.20.20.220;Dbxref=Genbank:YP_001533018.1,GeneID:5713240;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533018.1;transl_table=11
NC_009952.1	RefSeq	gene	1744794	1745453	.	+	.	ID=gene1698;Name=Dshi_1676;Dbxref=GeneID:5713241;gbkey=Gene;locus_tag=Dshi_1676
NC_009952.1	RefSeq	CDS	1744794	1745453	.	+	0	ID=cds1670;Name=YP_001533019.1;Parent=gene1698;Note=TIGRFAMS: TIGR01509 haloacid dehalogenase superfamily%2C subfamily IA%2C variant 3 with third motif having DD or ED%3B COG: COG0637 - Predicted phosphatase%2Fphosphohexomutase%3B PFAM: PF00702%3B SPRINT: PR00413%3B PROSITE: PS01228%3B SWISSPROT Q9X0Y1: Phosphorylated carbohydrates phosphatase TM_1254%2C P77475: Phosphatase yqaB;Dbxref=Genbank:YP_001533019.1,GeneID:5713241;gbkey=CDS;product=HAD-like hydrolase;protein_id=YP_001533019.1;transl_table=11
NC_009952.1	RefSeq	gene	1745450	1746439	.	+	.	ID=gene1699;Name=Dshi_1677;Dbxref=GeneID:5713242;gbkey=Gene;locus_tag=Dshi_1677
NC_009952.1	RefSeq	CDS	1745450	1746439	.	+	0	ID=cds1671;Name=YP_001533020.1;Parent=gene1699;Note=catalyzes the transfer of the N5-methyl group from %286S%29-methyl tetrahydrofolate to the cobalt center of a corrinoid iron-sulfur protein;Dbxref=Genbank:YP_001533020.1,GeneID:5713242;gbkey=CDS;product=methyltetrahydrofolate:corrinoid%2Firon-sulfur protein methyltransferase;protein_id=YP_001533020.1;transl_table=11
NC_009952.1	RefSeq	gene	1746502	1747206	.	+	.	ID=gene1700;Name=Dshi_1678;Dbxref=GeneID:5713243;gbkey=Gene;locus_tag=Dshi_1678
NC_009952.1	RefSeq	CDS	1746502	1747206	.	+	0	ID=cds1672;Name=YP_001533021.1;Parent=gene1700;Dbxref=Genbank:YP_001533021.1,GeneID:5713243;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533021.1;transl_table=11
NC_009952.1	RefSeq	gene	1747369	1747983	.	+	.	ID=gene1701;Name=Dshi_1679;Dbxref=GeneID:5713244;gbkey=Gene;locus_tag=Dshi_1679
NC_009952.1	RefSeq	CDS	1747369	1747983	.	+	0	ID=cds1673;Name=YP_001533022.1;Parent=gene1701;Dbxref=Genbank:YP_001533022.1,GeneID:5713244;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533022.1;transl_table=11
NC_009952.1	RefSeq	gene	1748119	1750191	.	+	.	ID=gene1702;Name=Dshi_1680;Dbxref=GeneID:5713245;gbkey=Gene;locus_tag=Dshi_1680
NC_009952.1	RefSeq	CDS	1748119	1750191	.	+	0	ID=cds1674;Name=YP_001533023.1;Parent=gene1702;Note=COG: COG3894 - Uncharacterized metal-binding protein%3B PFAM: PF00111%3B PROSITE: PS51085%3B similar to ferredoxin;Dbxref=Genbank:YP_001533023.1,GeneID:5713245;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533023.1;transl_table=11
NC_009952.1	RefSeq	gene	1750240	1750313	.	+	.	ID=gene1703;Name=Dshi_6029;Dbxref=GeneID:5713246;gbkey=Gene;locus_tag=Dshi_6029
NC_009952.1	RefSeq	tRNA	1750240	1750313	.	+	.	ID=rna28;Parent=gene1703;Dbxref=GeneID:5713246;codons=63;gbkey=tRNA;product=tRNA-Gly
NC_009952.1	RefSeq	exon	1750240	1750313	.	+	.	ID=id32;Parent=rna28;Dbxref=GeneID:5713246;codons=63;gbkey=tRNA;product=tRNA-Gly
NC_009952.1	RefSeq	gene	1750319	1750810	.	+	.	ID=gene1704;Name=Dshi_1681;Dbxref=GeneID:5713247;gbkey=Gene;locus_tag=Dshi_1681
NC_009952.1	RefSeq	CDS	1750319	1750810	.	+	0	ID=cds1675;Name=YP_001533024.1;Parent=gene1704;Note=COG: COG0824 - Predicted thioesterase%3B TIGRFAM: TIGR00051-conserved hypothetical protein TIGR00051%3B PFAM: PF03061%3B SUPERFAMILY: SSF54637;Dbxref=Genbank:YP_001533024.1,GeneID:5713247;gbkey=CDS;product=putative Thioesterase%2Fthiol ester dehydrase-isomerase;protein_id=YP_001533024.1;transl_table=11
NC_009952.1	RefSeq	gene	1750801	1752405	.	-	.	ID=gene1705;Name=pgi;Dbxref=GeneID:5713248;gbkey=Gene;gene=pgi;locus_tag=Dshi_1682
NC_009952.1	RefSeq	CDS	1750801	1752405	.	-	0	ID=cds1676;Name=YP_001533025.1;Parent=gene1705;Note=functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways %28EMP%29 and in gluconeogenesis%3B catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate%3B member of PGI family;Dbxref=Genbank:YP_001533025.1,GeneID:5713248;gbkey=CDS;gene=pgi;product=glucose-6-phosphate isomerase;protein_id=YP_001533025.1;transl_table=11
NC_009952.1	RefSeq	gene	1752430	1753104	.	-	.	ID=gene1706;Name=Dshi_1683;Dbxref=GeneID:5713249;gbkey=Gene;locus_tag=Dshi_1683
NC_009952.1	RefSeq	CDS	1752430	1753104	.	-	0	ID=cds1677;Name=YP_001533026.1;Parent=gene1706;Note=TIGRFAM: TIGR01198 6-phosphogluconolactonase%3B COG: COG0363 - 6-phosphogluconolactonase%2FGlucosamine-6-phosphate isomerase%2Fdeaminase%3B PANTHER: PTHR11054- 6-phosphogluconolactonase;Dbxref=Genbank:YP_001533026.1,GeneID:5713249;gbkey=CDS;product=putative 6-phosphogluconolactonase;protein_id=YP_001533026.1;transl_table=11
NC_009952.1	RefSeq	gene	1753116	1754570	.	-	.	ID=gene1707;Name=zwf;Dbxref=GeneID:5713250;gbkey=Gene;gene=zwf;locus_tag=Dshi_1684
NC_009952.1	RefSeq	CDS	1753116	1754570	.	-	0	ID=cds1678;Name=YP_001533027.1;Parent=gene1707;Note=catalyzes the formation of D-glucono-1%2C5-lactone 6-phosphate from D-glucose 6-phosphate;Dbxref=Genbank:YP_001533027.1,GeneID:5713250;gbkey=CDS;gene=zwf;product=glucose-6-phosphate 1-dehydrogenase;protein_id=YP_001533027.1;transl_table=11
NC_009952.1	RefSeq	gene	1754813	1755757	.	+	.	ID=gene1708;Name=Dshi_1685;Dbxref=GeneID:5713251;gbkey=Gene;locus_tag=Dshi_1685
NC_009952.1	RefSeq	CDS	1754813	1755757	.	+	0	ID=cds1679;Name=YP_001533028.1;Parent=gene1708;Note=COG: COG0535 - Predicted Fe-S oxidoreductases%3B PFAM: PF04055;Dbxref=Genbank:YP_001533028.1,GeneID:5713251;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533028.1;transl_table=11
NC_009952.1	RefSeq	gene	1755768	1756544	.	-	.	ID=gene1709;Name=Dshi_1686;Dbxref=GeneID:5713252;gbkey=Gene;locus_tag=Dshi_1686
NC_009952.1	RefSeq	CDS	1755768	1756544	.	-	0	ID=cds1680;Name=YP_001533029.1;Parent=gene1709;Note=COG: COG1305 - Transglutaminase-like enzymes%2C putative cysteine proteases%3B PFAM: pfam01841%3B SMART: SM00460%3B SUPERFAMILY: SSF54001%3B transglutaminase-like;Dbxref=Genbank:YP_001533029.1,GeneID:5713252;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533029.1;transl_table=11
NC_009952.1	RefSeq	gene	1756672	1757268	.	-	.	ID=gene1710;Name=Dshi_1687;Dbxref=GeneID:5713253;gbkey=Gene;locus_tag=Dshi_1687
NC_009952.1	RefSeq	CDS	1756672	1757268	.	-	0	ID=cds1681;Name=YP_001533030.1;Parent=gene1710;Note=COG: COG1403 - Restriction endonuclease%3B PFAM: PF01844-HNH endonuclease%3B SMART: SM00507-HNH nucleases;Dbxref=Genbank:YP_001533030.1,GeneID:5713253;gbkey=CDS;product=putative HNH endonuclease;protein_id=YP_001533030.1;transl_table=11
NC_009952.1	RefSeq	gene	1757458	1758129	.	-	.	ID=gene1711;Name=Dshi_1688;Dbxref=GeneID:5713254;gbkey=Gene;locus_tag=Dshi_1688
NC_009952.1	RefSeq	CDS	1757458	1758129	.	-	0	ID=cds1682;Name=YP_001533031.1;Parent=gene1711;Note=COG: COG0400 - Predicted esterase%3B PFAM: PF02230;Dbxref=Genbank:YP_001533031.1,GeneID:5713254;gbkey=CDS;product=putative phospholipase %2F carboxylesterase;protein_id=YP_001533031.1;transl_table=11
NC_009952.1	RefSeq	gene	1758126	1758758	.	-	.	ID=gene1712;Name=Dshi_1689;Dbxref=GeneID:5713255;gbkey=Gene;locus_tag=Dshi_1689
NC_009952.1	RefSeq	CDS	1758126	1758758	.	-	0	ID=cds1683;Name=YP_001533032.1;Parent=gene1712;Note=similar to SWISSPROT P04395: DNA-3-methyladenine glycosylase 2%2C alkylbase DNA glycosidase alkA family member%3B COG: COG0122 - 3-methyladenine DNA glycosylase%2F8-oxoguanine DNA glycosylase%3B PFAM: PF00730%3B SMART: SM00478;Dbxref=Genbank:YP_001533032.1,GeneID:5713255;gbkey=CDS;product=DNA-glycosylase family protein;protein_id=YP_001533032.1;transl_table=11
NC_009952.1	RefSeq	gene	1758740	1759486	.	-	.	ID=gene1713;Name=cobK;Dbxref=GeneID:5713256;gbkey=Gene;gene=cobK;locus_tag=Dshi_1690
NC_009952.1	RefSeq	CDS	1758740	1759486	.	-	0	ID=cds1684;Name=YP_001533033.1;Parent=gene1713;Note=SWISSPROT P21920: Precorrin-6A reductase%3B PFAM PF02571: Precorrin-6x reductase CbiJ%2FCobK%3B TIGRFAM: TIGR00715%3B COG: COG2099;Dbxref=Genbank:YP_001533033.1,GeneID:5713256;gbkey=CDS;gene=cobK;product=precorrin-6A reductase;protein_id=YP_001533033.1;transl_table=11
NC_009952.1	RefSeq	gene	1759483	1760532	.	-	.	ID=gene1714;Name=cbiD;Dbxref=GeneID:5713257;gbkey=Gene;gene=cbiD;locus_tag=Dshi_1691
NC_009952.1	RefSeq	CDS	1759483	1760532	.	-	0	ID=cds1685;Name=YP_001533034.1;Parent=gene1714;Note=PFAM PF01888: CbiD%3B SUPERFAMILY: CbiD-like%3B TIGRFAM: TIGR00312 cobalamin biosynthesis protein CbiD%3B COG: COG1903%3B SWISSPROT Q2W3X9: putative cobalt-precorrin-6A synthase %5Bdeacetylating%5D%2C belongs to the cbiD-family;Dbxref=Genbank:YP_001533034.1,GeneID:5713257;gbkey=CDS;gene=cbiD;product=cobalamin %28vitamin B12%29 biosynthesis CbiD protein;protein_id=YP_001533034.1;transl_table=11
NC_009952.1	RefSeq	gene	1760630	1761475	.	+	.	ID=gene1715;Name=cobA1;Dbxref=GeneID:5713258;gbkey=Gene;gene=cobA1;locus_tag=Dshi_1692
NC_009952.1	RefSeq	CDS	1760630	1761475	.	+	0	ID=cds1686;Name=YP_001533035.1;Parent=gene1715;Note=SWISSPROT P21631: Uroporphyrinogen-III C-methyltransferase%3B TIGRFAM: TIGR01469 uroporphyrin-III C-methyltransferase%3B COG: COG0007%3B PFAM: pfam00590%3B Gene3D: G3DSA:3.30.950.10%2C G3DSA:3.40.1010.10%3B PROSITE: PS00840;Dbxref=Genbank:YP_001533035.1,GeneID:5713258;gbkey=CDS;gene=cobA1;product=uroporphyrinogen-III C-methyltransferase;protein_id=YP_001533035.1;transl_table=11
NC_009952.1	RefSeq	gene	1761472	1762767	.	+	.	ID=gene1716;Name=cobB;Dbxref=GeneID:5713259;gbkey=Gene;gene=cobB;locus_tag=Dshi_1693
NC_009952.1	RefSeq	CDS	1761472	1762767	.	+	0	ID=cds1687;Name=YP_001533036.1;Parent=gene1716;Note=responsible for the amidation of carboxylic groups at position A and C of cobyrinic acid or hydrogenobrynic acid;Dbxref=Genbank:YP_001533036.1,GeneID:5713259;gbkey=CDS;gene=cobB;product=cobyrinic acid a%2Cc-diamide synthase;protein_id=YP_001533036.1;transl_table=11
NC_009952.1	RefSeq	gene	1762829	1764055	.	+	.	ID=gene1717;Name=Dshi_1694;Dbxref=GeneID:5713260;gbkey=Gene;locus_tag=Dshi_1694
NC_009952.1	RefSeq	CDS	1762829	1764055	.	+	0	ID=cds1688;Name=YP_001533037.1;Parent=gene1717;Note=PFAM: PF07690%3B PROSITE: PS50850;Dbxref=Genbank:YP_001533037.1,GeneID:5713260;gbkey=CDS;product=major facilitator superfamiy transporter;protein_id=YP_001533037.1;transl_table=11
NC_009952.1	RefSeq	gene	1764125	1764895	.	-	.	ID=gene1718;Name=Dshi_1695;Dbxref=GeneID:5713261;gbkey=Gene;locus_tag=Dshi_1695
NC_009952.1	RefSeq	CDS	1764125	1764895	.	-	0	ID=cds1689;Name=YP_001533038.1;Parent=gene1718;Note=COG: COG1562 - Phytoene%2Fsqualene synthetase;Dbxref=Genbank:YP_001533038.1,GeneID:5713261;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533038.1;transl_table=11
NC_009952.1	RefSeq	gene	1764892	1766529	.	-	.	ID=gene1719;Name=Dshi_1696;Dbxref=GeneID:5713262;gbkey=Gene;locus_tag=Dshi_1696
NC_009952.1	RefSeq	CDS	1764892	1766529	.	-	0	ID=cds1690;Name=YP_001533039.1;Parent=gene1719;Note=TIGRFAM: TIGR00977 2-isopropylmalate synthase%2Fhomocitrate synthase family protein%3B COG: COG0119%3B PFAM: PF00682%2C PF08502%3B PROSITE: PS00815%2C PS00816%3B SUPERFAMILY: SSF110921%2C SSF51569;Dbxref=Genbank:YP_001533039.1,GeneID:5713262;gbkey=CDS;product=putative alpha-isopropylmalate%2Fhomocitrate synthase family transferase;protein_id=YP_001533039.1;transl_table=11
NC_009952.1	RefSeq	gene	1766526	1766948	.	-	.	ID=gene1720;Name=Dshi_1697;Dbxref=GeneID:5713263;gbkey=Gene;locus_tag=Dshi_1697
NC_009952.1	RefSeq	CDS	1766526	1766948	.	-	0	ID=cds1691;Name=YP_001533040.1;Parent=gene1720;Dbxref=Genbank:YP_001533040.1,GeneID:5713263;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533040.1;transl_table=11
NC_009952.1	RefSeq	gene	1767125	1768501	.	-	.	ID=gene1721;Name=cysS;Dbxref=GeneID:5713264;gbkey=Gene;gene=cysS;locus_tag=Dshi_1698
NC_009952.1	RefSeq	CDS	1767125	1768501	.	-	0	ID=cds1692;Name=YP_001533041.1;Parent=gene1721;Note=catalyzes a two-step reaction%3B charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA;Dbxref=Genbank:YP_001533041.1,GeneID:5713264;gbkey=CDS;gene=cysS;product=cysteinyl-tRNA synthetase;protein_id=YP_001533041.1;transl_table=11
NC_009952.1	RefSeq	gene	1768734	1769330	.	-	.	ID=gene1722;Name=Dshi_1699;Dbxref=GeneID:5713265;gbkey=Gene;locus_tag=Dshi_1699
NC_009952.1	RefSeq	CDS	1768734	1769330	.	-	0	ID=cds1693;Name=YP_001533042.1;Parent=gene1722;Note=COG:  COG3637 - Opacity protein and related surface antigens;Dbxref=Genbank:YP_001533042.1,GeneID:5713265;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533042.1;transl_table=11
NC_009952.1	RefSeq	gene	1769636	1770391	.	+	.	ID=gene1723;Name=Dshi_1700;Dbxref=GeneID:5713266;gbkey=Gene;locus_tag=Dshi_1700
NC_009952.1	RefSeq	CDS	1769636	1770391	.	+	0	ID=cds1694;Name=YP_001533043.1;Parent=gene1723;Note=PFAM: PF00106-short chain dehydrogenase%3B PROSITE: PS00061-Short-chain dehydrogenases%2Freductases family signature;Dbxref=Genbank:YP_001533043.1,GeneID:5713266;gbkey=CDS;product=short-chain dehydrogenase%2Freductase family protein;protein_id=YP_001533043.1;transl_table=11
NC_009952.1	RefSeq	gene	1770402	1771202	.	-	.	ID=gene1724;Name=Dshi_1701;Dbxref=GeneID:5713267;gbkey=Gene;locus_tag=Dshi_1701
NC_009952.1	RefSeq	CDS	1770402	1771202	.	-	0	ID=cds1695;Name=YP_001533044.1;Parent=gene1724;Note=SWISSPROT P39832: High-affinity zinc uptake system membrane protein znuB%3B PFAM: PF00950%3B COG: COG1108 - ABC-type Mn2%2B%2FZn2%2B transport systems%2C permease components%3B ABC-3 family%3B znuB;Dbxref=Genbank:YP_001533044.1,GeneID:5713267;gbkey=CDS;product=putative high-affinity zinc uptake system membrane protein;protein_id=YP_001533044.1;transl_table=11
NC_009952.1	RefSeq	gene	1771199	1771942	.	-	.	ID=gene1725;Name=znuC;Dbxref=GeneID:5713268;gbkey=Gene;gene=znuC;locus_tag=Dshi_1702
NC_009952.1	RefSeq	CDS	1771199	1771942	.	-	0	ID=cds1696;Name=YP_001533045.1;Parent=gene1725;Note=SWISSPROT P0A9X1: Zinc import ATP-binding protein znuC%3B COG: COG1121 - ABC-type Mn%2FZn transport systems%2C ATPase component PFAM: PF00005%3B SMART: SM00382%3B SUPERFAMILY: SSF52540%3B Gene3D: G3DSA:3.40.50.300;Dbxref=Genbank:YP_001533045.1,GeneID:5713268;gbkey=CDS;gene=znuC;product=zinc import ATP-binding protein;protein_id=YP_001533045.1;transl_table=11
NC_009952.1	RefSeq	gene	1771939	1772436	.	-	.	ID=gene1726;Name=znuC;Dbxref=GeneID:5713269;gbkey=Gene;gene=znuC;locus_tag=Dshi_1703
NC_009952.1	RefSeq	CDS	1771939	1772436	.	-	0	ID=cds1697;Name=YP_001533046.1;Parent=gene1726;Note=SWISSPROT P0AC51: Zinc uptake regulation protein%3B PRODOM: PD002003%3B PFAM: pfam01475%3B zur;Dbxref=Genbank:YP_001533046.1,GeneID:5713269;gbkey=CDS;product=putative zinc uptake regulation protein;protein_id=YP_001533046.1;transl_table=11
NC_009952.1	RefSeq	gene	1772514	1773584	.	+	.	ID=gene1727;Name=Dshi_1704;Dbxref=GeneID:5713270;gbkey=Gene;locus_tag=Dshi_1704
NC_009952.1	RefSeq	CDS	1772514	1773584	.	+	0	ID=cds1698;Name=YP_001533047.1;Parent=gene1727;Note=SWISSPROT P39172: High-affinity zinc uptake system protein znuA %5BPrecursor%5D%3B COG: COG4531 - ABC-type Zn2%2B transport system%2C periplasmic component%2Fsurface adhesin%3B PFAM: PF01297%3B znuA;Dbxref=Genbank:YP_001533047.1,GeneID:5713270;gbkey=CDS;product=putative high-affinity zinc uptake system protein;protein_id=YP_001533047.1;transl_table=11
NC_009952.1	RefSeq	gene	1773613	1773951	.	+	.	ID=gene1728;Name=Dshi_1705;Dbxref=GeneID:5713271;gbkey=Gene;locus_tag=Dshi_1705
NC_009952.1	RefSeq	CDS	1773613	1773951	.	+	0	ID=cds1699;Name=YP_001533048.1;Parent=gene1728;Dbxref=Genbank:YP_001533048.1,GeneID:5713271;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533048.1;transl_table=11
NC_009952.1	RefSeq	gene	1773917	1774366	.	-	.	ID=gene1729;Name=msrB2;Dbxref=GeneID:5713272;gbkey=Gene;gene=msrB2;locus_tag=Dshi_1706
NC_009952.1	RefSeq	CDS	1773917	1774366	.	-	0	ID=cds1700;Name=YP_001533049.1;Parent=gene1729;Note=TIGRFAM: TIGR00357 methionine-R-sulfoxide reductase%3B COG: COG0229 - Conserved domain frequently associated with peptide methionine sulfoxide reductase%3B PFAM: pfam01641;Dbxref=Genbank:YP_001533049.1,GeneID:5713272;gbkey=CDS;gene=msrB2;product=peptide methionine sulfoxide reductase;protein_id=YP_001533049.1;transl_table=11
NC_009952.1	RefSeq	gene	1774366	1775166	.	+	.	ID=gene1730;Name=msrB2;Dbxref=GeneID:5713273;gbkey=Gene;gene=msrB2;locus_tag=Dshi_1707
NC_009952.1	RefSeq	CDS	1774366	1775166	.	+	0	ID=cds1701;Name=YP_001533050.1;Parent=gene1730;Note=SUPERFAMILY: SSF55729%3B COG: COG3176 - Putative hemolysin;Dbxref=Genbank:YP_001533050.1,GeneID:5713273;gbkey=CDS;product=putative acyl-CoA N-acyltransferases %28Nat%29 superfamily protein;protein_id=YP_001533050.1;transl_table=11
NC_009952.1	RefSeq	gene	1775173	1775952	.	+	.	ID=gene1731;Name=Dshi_1708;Dbxref=GeneID:5713274;gbkey=Gene;locus_tag=Dshi_1708
NC_009952.1	RefSeq	CDS	1775173	1775952	.	+	0	ID=cds1702;Name=YP_001533051.1;Parent=gene1731;Note=PFAM: PF01396%2C PF08378%3B SUPERFAMILY: SSF57783%3B nuclease related;Dbxref=Genbank:YP_001533051.1,GeneID:5713274;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533051.1;transl_table=11
NC_009952.1	RefSeq	gene	1776333	1777817	.	-	.	ID=gene1732;Name=mscS;Dbxref=GeneID:5713275;gbkey=Gene;gene=mscS;locus_tag=Dshi_1709
NC_009952.1	RefSeq	CDS	1776333	1777817	.	-	0	ID=cds1703;Name=YP_001533052.1;Parent=gene1732;Note=SWISSPROT P0C0S1: Small-conductance mechanosensitive channel%3B COG: COG0668 - Small-conductance mechanosensitive channel%3B PFAM: PF00924%3B SUPERFAMILY: SSF50182%2C SSF82861%2C SSF82689;Dbxref=Genbank:YP_001533052.1,GeneID:5713275;gbkey=CDS;gene=mscS;product=small conductance mechanosensitive channel;protein_id=YP_001533052.1;transl_table=11
NC_009952.1	RefSeq	gene	1778048	1778410	.	-	.	ID=gene1733;Name=Dshi_1710;Dbxref=GeneID:5713276;gbkey=Gene;locus_tag=Dshi_1710
NC_009952.1	RefSeq	CDS	1778048	1778410	.	-	0	ID=cds1704;Name=YP_001533053.1;Parent=gene1733;Note=SWISSPROT P0AC69: Glutaredoxin-4%3B PFAM: Glutaredoxin%3B TIGRFAM: TIGR00365 glutaredoxin-related protein%3B COG: COG0278;Dbxref=Genbank:YP_001533053.1,GeneID:5713276;gbkey=CDS;product=putative monothiol glutaredoxin;protein_id=YP_001533053.1;transl_table=11
NC_009952.1	RefSeq	gene	1778403	1778669	.	-	.	ID=gene1734;Name=Dshi_1711;Dbxref=GeneID:5713277;gbkey=Gene;locus_tag=Dshi_1711
NC_009952.1	RefSeq	CDS	1778403	1778669	.	-	0	ID=cds1705;Name=YP_001533054.1;Parent=gene1734;Dbxref=Genbank:YP_001533054.1,GeneID:5713277;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533054.1;transl_table=11
NC_009952.1	RefSeq	gene	1778669	1778902	.	-	.	ID=gene1735;Name=Dshi_1712;Dbxref=GeneID:5713278;gbkey=Gene;locus_tag=Dshi_1712
NC_009952.1	RefSeq	CDS	1778669	1778902	.	-	0	ID=cds1706;Name=YP_001533055.1;Parent=gene1735;Note=PFAM: PF01722%3B PANTHER: PTHR12735%3B Gene3D: G3DSA:3.30.300.90%3B COG: COG0271 - Stress-induced morphogen %28activity unknown%29%3B similar to bolA-like proteins;Dbxref=Genbank:YP_001533055.1,GeneID:5713278;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533055.1;transl_table=11
NC_009952.1	RefSeq	gene	1779001	1781172	.	-	.	ID=gene1736;Name=purL;Dbxref=GeneID:5713279;gbkey=Gene;gene=purL;locus_tag=Dshi_1713
NC_009952.1	RefSeq	CDS	1779001	1781172	.	-	0	ID=cds1707;Name=YP_001533056.1;Parent=gene1736;Note=catalyzes the formation of 2-%28formamido%29-N1-%285-phospho-D-ribosyl%29acetamidine from N2-formyl-N1-%285-phospho-D-ribosyl%29glycinamide and L-glutamine in purine biosynthesis;Dbxref=Genbank:YP_001533056.1,GeneID:5713279;gbkey=CDS;gene=purL;product=phosphoribosylformylglycinamidine synthase II;protein_id=YP_001533056.1;transl_table=11
NC_009952.1	RefSeq	gene	1781528	1783372	.	+	.	ID=gene1737;Name=Dshi_1714;Dbxref=GeneID:5713280;gbkey=Gene;locus_tag=Dshi_1714
NC_009952.1	RefSeq	CDS	1781528	1783372	.	+	0	ID=cds1708;Name=YP_001533057.1;Parent=gene1737;Note=COG: COG0488 - ATPase components of ABC transporters with duplicated ATPase domains%3B PFAM: PF00005%3B PROSITE: PS00211%2C PS50893%3B SUPERFAMILY: SSF52540%3B Gene3D: G3DSA:3.40.50.300;Dbxref=Genbank:YP_001533057.1,GeneID:5713280;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=YP_001533057.1;transl_table=11
NC_009952.1	RefSeq	gene	1783558	1784403	.	+	.	ID=gene1738;Name=Dshi_1715;Dbxref=GeneID:5713281;gbkey=Gene;locus_tag=Dshi_1715
NC_009952.1	RefSeq	CDS	1783558	1784403	.	+	0	ID=cds1709;Name=YP_001533058.1;Parent=gene1738;Note=SUPERFAMILY: SSF52540%3B Gene3D: G3DSA:3.40.50.300%3B PFAM: pfam00685%3B similar to sulfotransferase;Dbxref=Genbank:YP_001533058.1,GeneID:5713281;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533058.1;transl_table=11
NC_009952.1	RefSeq	gene	1784400	1784858	.	-	.	ID=gene1739;Name=Dshi_1716;Dbxref=GeneID:5713282;gbkey=Gene;locus_tag=Dshi_1716
NC_009952.1	RefSeq	CDS	1784400	1784858	.	-	0	ID=cds1710;Name=YP_001533059.1;Parent=gene1739;Note=COG: COG2913 - Small protein A %28tmRNA-binding%29;Dbxref=Genbank:YP_001533059.1,GeneID:5713282;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533059.1;transl_table=11
NC_009952.1	RefSeq	gene	1785059	1785622	.	+	.	ID=gene1740;Name=Dshi_1717;Dbxref=GeneID:5713283;gbkey=Gene;locus_tag=Dshi_1717
NC_009952.1	RefSeq	CDS	1785059	1785622	.	+	0	ID=cds1711;Name=YP_001533060.1;Parent=gene1740;Note=COG: COG1399 - Predicted metal-binding%2C possibly nucleic acid-binding protein%3B PFAM: PF02620;Dbxref=Genbank:YP_001533060.1,GeneID:5713283;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533060.1;transl_table=11
NC_009952.1	RefSeq	gene	1785846	1786052	.	+	.	ID=gene1741;Name=rpmF;Dbxref=GeneID:5713284;gbkey=Gene;gene=rpmF;locus_tag=Dshi_1718
NC_009952.1	RefSeq	CDS	1785846	1786052	.	+	0	ID=cds1712;Name=YP_001533061.1;Parent=gene1741;Note=some L32 proteins have zinc finger motifs consisting of CXXC while others do not;Dbxref=Genbank:YP_001533061.1,GeneID:5713284;gbkey=CDS;gene=rpmF;product=50S ribosomal protein L32;protein_id=YP_001533061.1;transl_table=11
NC_009952.1	RefSeq	gene	1786088	1787245	.	+	.	ID=gene1742;Name=plsX;Dbxref=GeneID:5713285;gbkey=Gene;gene=plsX;locus_tag=Dshi_1719
NC_009952.1	RefSeq	CDS	1786088	1787245	.	+	0	ID=cds1713;Name=YP_001533062.1;Parent=gene1742;Note=involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis%3B functions with PlsY;Dbxref=Genbank:YP_001533062.1,GeneID:5713285;gbkey=CDS;gene=plsX;product=putative glycerol-3-phosphate acyltransferase PlsX;protein_id=YP_001533062.1;transl_table=11
NC_009952.1	RefSeq	gene	1787238	1788212	.	+	.	ID=gene1743;Name=fabH;Dbxref=GeneID:5713286;gbkey=Gene;gene=fabH;locus_tag=Dshi_1720
NC_009952.1	RefSeq	CDS	1787238	1788212	.	+	0	ID=cds1714;Name=YP_001533063.1;Parent=gene1743;Note=SWISSPROT P0A6R0: 3-oxoacyl-%5Bacyl-carrier-protein%5D synthase 3. TIGRFAM: TIGR00747 3-oxoacyl-%28acyl-carrier-protein%29 synthase III%3B COG: COG0332%3B PFAM: PF08541%2C PF08545;Dbxref=Genbank:YP_001533063.1,GeneID:5713286;gbkey=CDS;gene=fabH;product=3-oxoacyl-ACP synthase;protein_id=YP_001533063.1;transl_table=11
NC_009952.1	RefSeq	gene	1788324	1788629	.	+	.	ID=gene1744;Name=ihfA;Dbxref=GeneID:5713287;gbkey=Gene;gene=ihfA;locus_tag=Dshi_1721
NC_009952.1	RefSeq	CDS	1788324	1788629	.	+	0	ID=cds1715;Name=YP_001533064.1;Parent=gene1744;Note=This protein is one of the two subunits of integration host factor%2C a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control;Dbxref=Genbank:YP_001533064.1,GeneID:5713287;gbkey=CDS;gene=ihfA;product=integration host factor subunit alpha;protein_id=YP_001533064.1;transl_table=11
NC_009952.1	RefSeq	gene	1788669	1789406	.	+	.	ID=gene1745;Name=Dshi_1722;Dbxref=GeneID:5713288;gbkey=Gene;locus_tag=Dshi_1722
NC_009952.1	RefSeq	CDS	1788669	1789406	.	+	0	ID=cds1716;Name=YP_001533065.1;Parent=gene1745;Note=PFAM: PF00376%3B SMART: SM00422%3B COG: COG0789 - Predicted transcriptional regulators%3B similar to MerR family regulatory protein;Dbxref=Genbank:YP_001533065.1,GeneID:5713288;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533065.1;transl_table=11
NC_009952.1	RefSeq	gene	1789492	1789568	.	+	.	ID=gene1746;Name=Dshi_6030;Dbxref=GeneID:5713289;gbkey=Gene;locus_tag=Dshi_6030
NC_009952.1	RefSeq	tRNA	1789492	1789568	.	+	.	ID=rna29;Parent=gene1746;Dbxref=GeneID:5713289;codons=21;gbkey=tRNA;product=tRNA-Pro
NC_009952.1	RefSeq	exon	1789492	1789568	.	+	.	ID=id33;Parent=rna29;Dbxref=GeneID:5713289;codons=21;gbkey=tRNA;product=tRNA-Pro
NC_009952.1	RefSeq	gene	1789628	1790722	.	+	.	ID=gene1747;Name=Dshi_1723;Dbxref=GeneID:5713290;gbkey=Gene;locus_tag=Dshi_1723
NC_009952.1	RefSeq	CDS	1789628	1790722	.	+	0	ID=cds1717;Name=YP_001533066.1;Parent=gene1747;Note=Catalyzes the deamination of dCTP to form dUTP;Dbxref=Genbank:YP_001533066.1,GeneID:5713290;gbkey=CDS;product=2%27-deoxycytidine 5%27-triphosphate deaminase;protein_id=YP_001533066.1;transl_table=11
NC_009952.1	RefSeq	gene	1791066	1791755	.	-	.	ID=gene1748;Name=Dshi_1724;Dbxref=GeneID:5713291;gbkey=Gene;locus_tag=Dshi_1724
NC_009952.1	RefSeq	CDS	1791066	1791755	.	-	0	ID=cds1718;Name=YP_001533067.1;Parent=gene1748;Note=TIGRFAM: TIGR00281 segregation and condensation protein B%3B SWISSPROT Q65HX2: Segregation and condensation protein B%3B PFAM: PF04079%3B scpB;Dbxref=Genbank:YP_001533067.1,GeneID:5713291;gbkey=CDS;product=putative segregation and condensation protein B;protein_id=YP_001533067.1;transl_table=11
NC_009952.1	RefSeq	gene	1791755	1792549	.	-	.	ID=gene1749;Name=Dshi_1725;Dbxref=GeneID:5713292;gbkey=Gene;locus_tag=Dshi_1725
NC_009952.1	RefSeq	CDS	1791755	1792549	.	-	0	ID=cds1719;Name=YP_001533068.1;Parent=gene1749;Note=SWISSPROT Q87BI4: Segregation and condensation protein A%3B PFAM: PF02616%3B scpA;Dbxref=Genbank:YP_001533068.1,GeneID:5713292;gbkey=CDS;product=putative Segregation and condensation protein A;protein_id=YP_001533068.1;transl_table=11
NC_009952.1	RefSeq	gene	1792572	1793558	.	-	.	ID=gene1750;Name=nagZ;Dbxref=GeneID:5713293;gbkey=Gene;gene=nagZ;locus_tag=Dshi_1726
NC_009952.1	RefSeq	CDS	1792572	1793558	.	-	0	ID=cds1720;Name=YP_001533069.1;Parent=gene1750;Note=PFAM: PF00933%3B PROSITE: PS00775%3B SWISSPROT P75949: Beta-hexosaminidase%3B COG: COG1472 - Beta-glucosidase-related glycosidases;Dbxref=Genbank:YP_001533069.1,GeneID:5713293;gbkey=CDS;gene=nagZ;product=beta-hexosamidase;protein_id=YP_001533069.1;transl_table=11
NC_009952.1	RefSeq	gene	1793568	1794512	.	-	.	ID=gene1751;Name=Dshi_1727;Dbxref=GeneID:5713294;gbkey=Gene;locus_tag=Dshi_1727
NC_009952.1	RefSeq	CDS	1793568	1794512	.	-	0	ID=cds1721;Name=YP_001533070.1;Parent=gene1751;Note=PFAM: PF05036%3B related to proteins involved in sporulation and cell division;Dbxref=Genbank:YP_001533070.1,GeneID:5713294;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533070.1;transl_table=11
NC_009952.1	RefSeq	gene	1794601	1796346	.	-	.	ID=gene1752;Name=argS;Dbxref=GeneID:5713295;gbkey=Gene;gene=argS;locus_tag=Dshi_1728
NC_009952.1	RefSeq	CDS	1794601	1796346	.	-	0	ID=cds1722;Name=YP_001533071.1;Parent=gene1752;Note=catalyzes a two-step reaction%2C first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA%3B class-I aminoacyl-tRNA synthetase;Dbxref=Genbank:YP_001533071.1,GeneID:5713295;gbkey=CDS;gene=argS;product=arginyl-tRNA synthetase;protein_id=YP_001533071.1;transl_table=11
NC_009952.1	RefSeq	gene	1796409	1797608	.	-	.	ID=gene1753;Name=Dshi_1729;Dbxref=GeneID:5713296;gbkey=Gene;locus_tag=Dshi_1729
NC_009952.1	RefSeq	CDS	1796409	1797608	.	-	0	ID=cds1723;Name=YP_001533072.1;Parent=gene1753;Note=TIGRFAM: TIGR01353 deoxyguanosinetriphosphate triphosphohydrolase%2C putative%2C TIGR00277%3B SWISSPROT P15723: Deoxyguanosinetriphosphate triphosphohydrolase%2C P63934: Deoxyguanosinetriphosphate triphosphohydrolase-like protein%3B COG: COG0232 - dGTP triphosphohydrolase%3B PFAM: pfam01966;Dbxref=Genbank:YP_001533072.1,GeneID:5713296;gbkey=CDS;product=putative deoxyguanosinetriphosphate triphosphohydrolase;protein_id=YP_001533072.1;transl_table=11
NC_009952.1	RefSeq	gene	1797652	1797984	.	+	.	ID=gene1754;Name=Dshi_1730;Dbxref=GeneID:5713297;gbkey=Gene;locus_tag=Dshi_1730
NC_009952.1	RefSeq	CDS	1797652	1797984	.	+	0	ID=cds1724;Name=YP_001533073.1;Parent=gene1754;Note=TIGRFAM: TIGR00049 Iron-sulfur cluster assembly accessory protein%3B PROSITE: PS01152%3B PFAM: PF01521;Dbxref=Genbank:YP_001533073.1,GeneID:5713297;gbkey=CDS;product=iron-sulfur cluster assembly accessory protein;protein_id=YP_001533073.1;transl_table=11
NC_009952.1	RefSeq	gene	1798047	1798658	.	-	.	ID=gene1755;Name=Dshi_1731;Dbxref=GeneID:5713298;gbkey=Gene;locus_tag=Dshi_1731
NC_009952.1	RefSeq	CDS	1798047	1798658	.	-	0	ID=cds1725;Name=YP_001533074.1;Parent=gene1755;Dbxref=Genbank:YP_001533074.1,GeneID:5713298;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533074.1;transl_table=11
NC_009952.1	RefSeq	gene	1798913	1799737	.	-	.	ID=gene1756;Name=hemK;Dbxref=GeneID:5713299;gbkey=Gene;gene=hemK;locus_tag=Dshi_1732
NC_009952.1	RefSeq	CDS	1798913	1799737	.	-	0	ID=cds1726;Name=YP_001533075.1;Parent=gene1756;Note=SWISSPROT P0ACC1: Protein methyltransferase hemK%3B TIGRFAM: TIGR00536 HemK family putative methylases%3B COG: COG2890 - Methylase of polypeptide chain release factors%3B PFAM: PF08241%3B PROSITE: PS00092%3B SUPERFAMILY: SSF53335;Dbxref=Genbank:YP_001533075.1,GeneID:5713299;gbkey=CDS;gene=hemK;product=putative protein methyltransferase;protein_id=YP_001533075.1;transl_table=11
NC_009952.1	RefSeq	gene	1799734	1800789	.	-	.	ID=gene1757;Name=prfA;Dbxref=GeneID:5713300;gbkey=Gene;gene=prfA;locus_tag=Dshi_1733
NC_009952.1	RefSeq	CDS	1799734	1800789	.	-	0	ID=cds1727;Name=YP_001533076.1;Parent=gene1757;Note=recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1%3B this protein is similar to release factor 2;Dbxref=Genbank:YP_001533076.1,GeneID:5713300;gbkey=CDS;gene=prfA;product=peptide chain release factor 1;protein_id=YP_001533076.1;transl_table=11
NC_009952.1	RefSeq	gene	1801041	1801505	.	-	.	ID=gene1758;Name=Dshi_1734;Dbxref=GeneID:5713301;gbkey=Gene;locus_tag=Dshi_1734
NC_009952.1	RefSeq	CDS	1801041	1801505	.	-	0	ID=cds1728;Name=YP_001533077.1;Parent=gene1758;Dbxref=Genbank:YP_001533077.1,GeneID:5713301;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533077.1;transl_table=11
NC_009952.1	RefSeq	gene	1801557	1802531	.	-	.	ID=gene1759;Name=speB;Dbxref=GeneID:5713302;gbkey=Gene;gene=speB;locus_tag=Dshi_1735
NC_009952.1	RefSeq	CDS	1801557	1802531	.	-	0	ID=cds1729;Name=YP_001533078.1;Parent=gene1759;Note=catalyzes the formation of putrescine from agmatine;Dbxref=Genbank:YP_001533078.1,GeneID:5713302;gbkey=CDS;gene=speB;product=agmatinase;protein_id=YP_001533078.1;transl_table=11
NC_009952.1	RefSeq	gene	1802535	1802939	.	-	.	ID=gene1760;Name=Dshi_1736;Dbxref=GeneID:5713303;gbkey=Gene;locus_tag=Dshi_1736
NC_009952.1	RefSeq	CDS	1802535	1802939	.	-	0	ID=cds1730;Name=YP_001533079.1;Parent=gene1760;Note=PFAM: PF05164- Cell division protein ZapA;Dbxref=Genbank:YP_001533079.1,GeneID:5713303;gbkey=CDS;product=putative cell division protein ZapA;protein_id=YP_001533079.1;transl_table=11
NC_009952.1	RefSeq	gene	1802941	1803369	.	-	.	ID=gene1761;Name=Dshi_1737;Dbxref=GeneID:5713304;gbkey=Gene;locus_tag=Dshi_1737
NC_009952.1	RefSeq	CDS	1802941	1803369	.	-	0	ID=cds1731;Name=YP_001533080.1;Parent=gene1761;Dbxref=Genbank:YP_001533080.1,GeneID:5713304;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533080.1;transl_table=11
NC_009952.1	RefSeq	gene	1803674	1805647	.	+	.	ID=gene1762;Name=tktA;Dbxref=GeneID:5713305;gbkey=Gene;gene=tktA;locus_tag=Dshi_1738
NC_009952.1	RefSeq	CDS	1803674	1805647	.	+	0	ID=cds1732;Name=YP_001533081.1;Parent=gene1762;Note=catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate%3B can transfer ketol groups between several groups%3B in Escherichia coli there are two tkt genes%2C tktA expressed during exponential growth and the tktB during stationary phase;Dbxref=Genbank:YP_001533081.1,GeneID:5713305;gbkey=CDS;gene=tktA;product=transketolase;protein_id=YP_001533081.1;transl_table=11
NC_009952.1	RefSeq	gene	1805810	1806757	.	-	.	ID=gene1763;Name=Dshi_1739;Dbxref=GeneID:5713306;gbkey=Gene;locus_tag=Dshi_1739
NC_009952.1	RefSeq	CDS	1805810	1806757	.	-	0	ID=cds1733;Name=YP_001533082.1;Parent=gene1763;Note=PFAM: PF05661%3B COG: COG2354;Dbxref=Genbank:YP_001533082.1,GeneID:5713306;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533082.1;transl_table=11
NC_009952.1	RefSeq	gene	1807000	1808001	.	+	.	ID=gene1764;Name=gap2;Dbxref=GeneID:5713307;gbkey=Gene;gene=gap2;locus_tag=Dshi_1740
NC_009952.1	RefSeq	CDS	1807000	1808001	.	+	0	ID=cds1734;Name=YP_001533083.1;Parent=gene1764;Note=SWISSPROT P00362: Glyceraldehyde-3-phosphate dehydrogenase%3B TIGRFAM: TIGR01534 glyceraldehyde-3-phosphate dehydrogenase%2C type I%3B COG: COG0057 - Glyceraldehyde-3-phosphate dehydrogenase%2Ferythrose-4-phosphate dehydrogenase%3B PFAM: pfam02800 pfam00044;Dbxref=Genbank:YP_001533083.1,GeneID:5713307;gbkey=CDS;gene=gap2;product=glyceraldehyde-3-phosphate dehydrogenase;protein_id=YP_001533083.1;transl_table=11
NC_009952.1	RefSeq	gene	1808037	1808192	.	+	.	ID=gene1765;Name=Dshi_1741;Dbxref=GeneID:5713308;gbkey=Gene;locus_tag=Dshi_1741
NC_009952.1	RefSeq	CDS	1808037	1808192	.	+	0	ID=cds1735;Name=YP_001533084.1;Parent=gene1765;Dbxref=Genbank:YP_001533084.1,GeneID:5713308;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533084.1;transl_table=11
NC_009952.1	RefSeq	gene	1808288	1809310	.	+	.	ID=gene1766;Name=gap1;Dbxref=GeneID:5713309;gbkey=Gene;gene=gap1;locus_tag=Dshi_1742
NC_009952.1	RefSeq	CDS	1808288	1809310	.	+	0	ID=cds1736;Name=YP_001533085.1;Parent=gene1766;Note=SWISSPROT P00362: Glyceraldehyde-3-phosphate dehydrogenase%3B TIGRFAM: TIGR01534 glyceraldehyde-3-phosphate dehydrogenase%2C type I%3B COG: COG0057 - Glyceraldehyde-3-phosphate dehydrogenase%2Ferythrose-4-phosphate dehydrogenase%3B PFAM: pfam02800 pfam00044;Dbxref=Genbank:YP_001533085.1,GeneID:5713309;gbkey=CDS;gene=gap1;product=glyceraldehyde-3-phosphate dehydrogenase;protein_id=YP_001533085.1;transl_table=11
NC_009952.1	RefSeq	gene	1809314	1809916	.	-	.	ID=gene1767;Name=Dshi_1743;Dbxref=GeneID:5713310;gbkey=Gene;locus_tag=Dshi_1743
NC_009952.1	RefSeq	CDS	1809314	1809916	.	-	0	ID=cds1737;Name=YP_001533086.1;Parent=gene1767;Note=PFAM: PF00583%3B PROSITE: PS51186%3B related to acetyltransferase%2C GNAT family;Dbxref=Genbank:YP_001533086.1,GeneID:5713310;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533086.1;transl_table=11
NC_009952.1	RefSeq	gene	1810248	1810763	.	-	.	ID=gene1768;Name=coaD;Dbxref=GeneID:5713311;gbkey=Gene;gene=coaD;locus_tag=Dshi_1744
NC_009952.1	RefSeq	CDS	1810248	1810763	.	-	0	ID=cds1738;Name=YP_001533087.1;Parent=gene1768;Note=Catalyzes the conversion of ATP and pantetheine 4%27-phosphate to diphosphate and 3%27-dephospho-coA;Dbxref=Genbank:YP_001533087.1,GeneID:5713311;gbkey=CDS;gene=coaD;product=phosphopantetheine adenylyltransferase;protein_id=YP_001533087.1;transl_table=11
NC_009952.1	RefSeq	gene	1810852	1811286	.	-	.	ID=gene1769;Name=Dshi_1745;Dbxref=GeneID:5713312;gbkey=Gene;locus_tag=Dshi_1745
NC_009952.1	RefSeq	CDS	1810852	1811286	.	-	0	ID=cds1739;Name=YP_001533088.1;Parent=gene1769;Note=PFAM: PF00571%3B SMART: SM00116%3B COG: COG2905 - Predicted signal-transduction protein containing cAMP-binding and CBS domains%3B related to cystathionine beta synthase;Dbxref=Genbank:YP_001533088.1,GeneID:5713312;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533088.1;transl_table=11
NC_009952.1	RefSeq	gene	1811339	1812232	.	-	.	ID=gene1770;Name=Dshi_1746;Dbxref=GeneID:5713313;gbkey=Gene;locus_tag=Dshi_1746
NC_009952.1	RefSeq	CDS	1811339	1812232	.	-	0	ID=cds1740;Name=YP_001533089.1;Parent=gene1770;Note=COG: COG0583 - Transcriptional regulator%3B PFAM: PF00126%2C PF03466%3B PROSITE: PS50931%3B SUPERFAMILY: SSF53850%2C SSF46785;Dbxref=Genbank:YP_001533089.1,GeneID:5713313;gbkey=CDS;product=HTH-type transcriptional regulator;protein_id=YP_001533089.1;transl_table=11
NC_009952.1	RefSeq	gene	1812332	1813831	.	+	.	ID=gene1771;Name=mmsA;Dbxref=GeneID:5713314;gbkey=Gene;gene=mmsA;locus_tag=Dshi_1747
NC_009952.1	RefSeq	CDS	1812332	1813831	.	+	0	ID=cds1741;Name=YP_001533090.1;Parent=gene1771;Note=SWISSPROT P28810: Methylmalonate-semialdehyde dehydrogenase %5Bacylating%5D%3B TIGRFAM: TIGR01722 methylmalonic acid semialdehyde dehydrogenase%3B PANTHER: PTHR11699:SF27%3B PFAM: PF00171%3B PROSITE: PS00070%3B COG: COG1012 - NAD-dependent aldehyde dehydrogenases;Dbxref=Genbank:YP_001533090.1,GeneID:5713314;gbkey=CDS;gene=mmsA;product=acylating methylmalonate-semialdehyde dehydrogenase;protein_id=YP_001533090.1;transl_table=11
NC_009952.1	RefSeq	gene	1813903	1814532	.	-	.	ID=gene1772;Name=Dshi_1748;Dbxref=GeneID:5713315;gbkey=Gene;locus_tag=Dshi_1748
NC_009952.1	RefSeq	CDS	1813903	1814532	.	-	0	ID=cds1742;Name=YP_001533091.1;Parent=gene1772;Dbxref=Genbank:YP_001533091.1,GeneID:5713315;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533091.1;transl_table=11
NC_009952.1	RefSeq	gene	1814843	1815970	.	+	.	ID=gene1773;Name=Dshi_1749;Dbxref=GeneID:5713316;gbkey=Gene;locus_tag=Dshi_1749
NC_009952.1	RefSeq	CDS	1814843	1815970	.	+	0	ID=cds1743;Name=YP_001533092.1;Parent=gene1773;Note=ATP-dependent carboxylate-amine ligase;Dbxref=Genbank:YP_001533092.1,GeneID:5713316;gbkey=CDS;product=carboxylate-amine ligase;protein_id=YP_001533092.1;transl_table=11
NC_009952.1	RefSeq	gene	1816051	1817196	.	+	.	ID=gene1774;Name=Dshi_1750;Dbxref=GeneID:5713317;gbkey=Gene;locus_tag=Dshi_1750
NC_009952.1	RefSeq	CDS	1816051	1817196	.	+	0	ID=cds1744;Name=YP_001533093.1;Parent=gene1774;Note=PFAM: PF00441%2C PF02770%2C PF02771%3B PROSITE: PS00072%2C PS00073%3B COG: COG1960 - Acyl-CoA dehydrogenases;Dbxref=Genbank:YP_001533093.1,GeneID:5713317;gbkey=CDS;product=acyl-CoA dehydrogenase;protein_id=YP_001533093.1;transl_table=11
NC_009952.1	RefSeq	gene	1817193	1818239	.	+	.	ID=gene1775;Name=Dshi_1751;Dbxref=GeneID:5713318;gbkey=Gene;locus_tag=Dshi_1751
NC_009952.1	RefSeq	CDS	1817193	1818239	.	+	0	ID=cds1745;Name=YP_001533094.1;Parent=gene1775;Note=COG: COG1024 - Enoyl-CoA hydratase%2Fcarnithine racemase%3B PFAM: PF00378%3B Gene3D: G3DSA:3.90.226.10;Dbxref=Genbank:YP_001533094.1,GeneID:5713318;gbkey=CDS;product=enoyl-CoA hydratase%2Fisomerase family protein;protein_id=YP_001533094.1;transl_table=11
NC_009952.1	RefSeq	gene	1818236	1819111	.	+	.	ID=gene1776;Name=mmsB;Dbxref=GeneID:5713319;gbkey=Gene;gene=mmsB;locus_tag=Dshi_1752
NC_009952.1	RefSeq	CDS	1818236	1819111	.	+	0	ID=cds1746;Name=YP_001533095.1;Parent=gene1776;Note=TIGRFAM: TIGR01692 3-hydroxyisobutyrate dehydrogenase%3B PANTHER: PTHR22981%3B PROSITE: PS00895%3B PFAM: PF03446%3B Gene3D: G3DSA:1.10.1040.10;Dbxref=Genbank:YP_001533095.1,GeneID:5713319;gbkey=CDS;gene=mmsB;product=3-hydroxyisobutyrate dehydrogenase;protein_id=YP_001533095.1;transl_table=11
NC_009952.1	RefSeq	gene	1819173	1819949	.	-	.	ID=gene1777;Name=Dshi_1753;Dbxref=GeneID:5713320;gbkey=Gene;locus_tag=Dshi_1753
NC_009952.1	RefSeq	CDS	1819173	1819949	.	-	0	ID=cds1747;Name=YP_001533096.1;Parent=gene1777;Note=COG: COG1024 - Enoyl-CoA hydratase%2Fcarnithine racemase%3B PFAM: PF00378%3B PROSITE: PS00166;Dbxref=Genbank:YP_001533096.1,GeneID:5713320;gbkey=CDS;product=enoyl-CoA hydratase;protein_id=YP_001533096.1;transl_table=11
NC_009952.1	RefSeq	gene	1820040	1820456	.	-	.	ID=gene1778;Name=Dshi_1754;Dbxref=GeneID:5713321;gbkey=Gene;locus_tag=Dshi_1754
NC_009952.1	RefSeq	CDS	1820040	1820456	.	-	0	ID=cds1748;Name=YP_001533097.1;Parent=gene1778;Dbxref=Genbank:YP_001533097.1,GeneID:5713321;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533097.1;transl_table=11
NC_009952.1	RefSeq	gene	1820449	1820655	.	-	.	ID=gene1779;Name=Dshi_1755;Dbxref=GeneID:5713322;gbkey=Gene;locus_tag=Dshi_1755
NC_009952.1	RefSeq	CDS	1820449	1820655	.	-	0	ID=cds1749;Name=YP_001533098.1;Parent=gene1779;Note=SWISSPROT Q9WZW0: tRNA pseudouridine synthase B%3B PRODOM: PD012454%3B similar to tRNA pseudouridine synthase B;Dbxref=Genbank:YP_001533098.1,GeneID:5713322;gbkey=CDS;product=putative tRNA pseudouridine synthase B;protein_id=YP_001533098.1;transl_table=11
NC_009952.1	RefSeq	gene	1820645	1821166	.	-	.	ID=gene1780;Name=Dshi_1756;Dbxref=GeneID:5713323;gbkey=Gene;locus_tag=Dshi_1756
NC_009952.1	RefSeq	CDS	1820645	1821166	.	-	0	ID=cds1750;Name=YP_001533099.1;Parent=gene1780;Note=SWISSPROT Q9K197: Carboxylesterase bioH%2C Q56841: 2-%28S%29-hydroxypropyl-CoM dehydrogenase;Dbxref=Genbank:YP_001533099.1,GeneID:5713323;gbkey=CDS;product=putative carboxylesterase;protein_id=YP_001533099.1;transl_table=11
NC_009952.1	RefSeq	gene	1821157	1821768	.	-	.	ID=gene1781;Name=Dshi_1757;Dbxref=GeneID:5713324;gbkey=Gene;locus_tag=Dshi_1757
NC_009952.1	RefSeq	CDS	1821157	1821768	.	-	0	ID=cds1751;Name=YP_001533100.1;Parent=gene1781;Note=COG: COG3926 - Putative secretion activating protein%3B PFAM: PF05838;Dbxref=Genbank:YP_001533100.1,GeneID:5713324;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533100.1;transl_table=11
NC_009952.1	RefSeq	gene	1821878	1822360	.	-	.	ID=gene1782;Name=ccmE;Dbxref=GeneID:5713325;gbkey=Gene;gene=ccmE;locus_tag=Dshi_1758
NC_009952.1	RefSeq	CDS	1821878	1822360	.	-	0	ID=cds1752;Name=YP_001533101.1;Parent=gene1782;Note=CycJ%3B periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes%3B requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome%3B part of the cytochrome c maturation system%3B periplasmic protein anchored to the inner membrane;Dbxref=Genbank:YP_001533101.1,GeneID:5713325;gbkey=CDS;gene=ccmE;product=cytochrome c-type biogenesis protein CcmE;protein_id=YP_001533101.1;transl_table=11
NC_009952.1	RefSeq	gene	1822376	1823401	.	-	.	ID=gene1783;Name=argC;Dbxref=GeneID:5713326;gbkey=Gene;gene=argC;locus_tag=Dshi_1759
NC_009952.1	RefSeq	CDS	1822376	1823401	.	-	0	ID=cds1753;Name=YP_001533102.1;Parent=gene1783;Note=catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis%3B involved in both the arginine and lysine biosynthetic pathways%3B lysine is produced via the AAA pathway%2C lysine from alpha-aminoadipate;Dbxref=Genbank:YP_001533102.1,GeneID:5713326;gbkey=CDS;gene=argC;product=N-acetyl-gamma-glutamyl-phosphate reductase;protein_id=YP_001533102.1;transl_table=11
NC_009952.1	RefSeq	gene	1823438	1824259	.	-	.	ID=gene1784;Name=murI;Dbxref=GeneID:5713327;gbkey=Gene;gene=murI;locus_tag=Dshi_1760
NC_009952.1	RefSeq	CDS	1823438	1824259	.	-	0	ID=cds1754;Name=YP_001533103.1;Parent=gene1784;Note=TIGRFAM: TIGR00067 glutamate racemase%3B PFAM PF01177: Asp%2FGlu%2FHydantoin racemase%3B PROSITE: PS00923%3B COG: COG0796 - Glutamate racemase;Dbxref=Genbank:YP_001533103.1,GeneID:5713327;gbkey=CDS;gene=murI;product=glutamate racemase;protein_id=YP_001533103.1;transl_table=11
NC_009952.1	RefSeq	gene	1824259	1825137	.	-	.	ID=gene1785;Name=murI;Dbxref=GeneID:5713328;gbkey=Gene;gene=murI;locus_tag=Dshi_1761
NC_009952.1	RefSeq	CDS	1824259	1825137	.	-	0	ID=cds1755;Name=YP_001533104.1;Parent=gene1785;Note=COG: COG3176-Putative hemolysin%3B PFAM: PF01553%3B SMART: SM00563%3B SUPERFAMILY: SSF69593;Dbxref=Genbank:YP_001533104.1,GeneID:5713328;gbkey=CDS;product=putative acyltransferase;protein_id=YP_001533104.1;transl_table=11
NC_009952.1	RefSeq	gene	1825196	1828603	.	-	.	ID=gene1786;Name=Dshi_1762;Dbxref=GeneID:5713329;gbkey=Gene;locus_tag=Dshi_1762
NC_009952.1	RefSeq	CDS	1825196	1828603	.	-	0	ID=cds1756;Name=YP_001533105.1;Parent=gene1786;Note=Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates;Dbxref=Genbank:YP_001533105.1,GeneID:5713329;gbkey=CDS;product=indolepyruvate ferredoxin oxidoreductase;protein_id=YP_001533105.1;transl_table=11
NC_009952.1	RefSeq	gene	1828760	1829662	.	+	.	ID=gene1787;Name=Dshi_1763;Dbxref=GeneID:5713330;gbkey=Gene;locus_tag=Dshi_1763
NC_009952.1	RefSeq	CDS	1828760	1829662	.	+	0	ID=cds1757;Name=YP_001533106.1;Parent=gene1787;Note=SWISSPROT P30846: Uncharacterized HTH-type transcriptional regulator yafC%3B COG: COG0583 - Transcriptional regulator%3B PFAM: PF00126%2C PF03466%3B PROSITE: PS50931%3B SUPERFAMILY: SSF53850%2C SSF46785;Dbxref=Genbank:YP_001533106.1,GeneID:5713330;gbkey=CDS;product=HTH-type transcriptional regulator;protein_id=YP_001533106.1;transl_table=11
NC_009952.1	RefSeq	gene	1829905	1830690	.	+	.	ID=gene1788;Name=Dshi_1764;Dbxref=GeneID:5713331;gbkey=Gene;locus_tag=Dshi_1764
NC_009952.1	RefSeq	CDS	1829905	1830690	.	+	0	ID=cds1758;Name=YP_001533107.1;Parent=gene1788;Note=SUPERFAMILY: SSF53474%3B PANTHER: PTHR11731%3B Gene3D: G3DSA:3.40.50.1820%3B COG: COG0657 - Esterase%2Flipase;Dbxref=Genbank:YP_001533107.1,GeneID:5713331;gbkey=CDS;product=putative hydrolase;protein_id=YP_001533107.1;transl_table=11
NC_009952.1	RefSeq	gene	1830691	1832526	.	-	.	ID=gene1789;Name=Dshi_1765;Dbxref=GeneID:5713332;gbkey=Gene;locus_tag=Dshi_1765
NC_009952.1	RefSeq	CDS	1830691	1832526	.	-	0	ID=cds1759;Name=YP_001533108.1;Parent=gene1789;Note=SWISSPROT Q99T13: Putative multidrug export ATP-binding%2Fpermease protein SAV1866%3B PROSITE: PS00211%2C PS50893%2C PS50929%3B PFAM: PF00664%2C PF00005%3B SMART: SM00382;Dbxref=Genbank:YP_001533108.1,GeneID:5713332;gbkey=CDS;product=putative multidrug export ATP-binding%2Fpermease;protein_id=YP_001533108.1;transl_table=11
NC_009952.1	RefSeq	gene	1832580	1834175	.	-	.	ID=gene1790;Name=Dshi_1766;Dbxref=GeneID:5713333;gbkey=Gene;locus_tag=Dshi_1766
NC_009952.1	RefSeq	CDS	1832580	1834175	.	-	0	ID=cds1760;Name=YP_001533109.1;Parent=gene1790;Note=PFAM: PF01476;Dbxref=Genbank:YP_001533109.1,GeneID:5713333;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533109.1;transl_table=11
NC_009952.1	RefSeq	gene	1834326	1834865	.	+	.	ID=gene1791;Name=Dshi_1767;Dbxref=GeneID:5713334;gbkey=Gene;locus_tag=Dshi_1767
NC_009952.1	RefSeq	CDS	1834326	1834865	.	+	0	ID=cds1761;Name=YP_001533110.1;Parent=gene1791;Note=PFAM: PF03641%3B TIGRFAM: TIGR00725 conserved hypothetical protein%2C DprA%2FSmf-related%2C family 1%2C TIGR00730 conserved hypothetical protein%2C DprA%2FSmf-related%2C family 2%3B SUPERFAMILY SSF102405: putative lysine decarboxylase;Dbxref=Genbank:YP_001533110.1,GeneID:5713334;gbkey=CDS;product=putative lysine carboxylase;protein_id=YP_001533110.1;transl_table=11
NC_009952.1	RefSeq	gene	1835047	1835688	.	-	.	ID=gene1792;Name=eda;Dbxref=GeneID:5713335;gbkey=Gene;gene=eda;locus_tag=Dshi_1768
NC_009952.1	RefSeq	CDS	1835047	1835688	.	-	0	ID=cds1762;Name=YP_001533111.1;Parent=gene1792;Note=SWISSPROT P0A955: KHG%2FKDPG aldolase%3B PFAM: PF01081%3B TIGRFAM: TIGR01182%3B COG: COG0800 - 2-keto-3-deoxy-6-phosphogluconate aldolase;Dbxref=Genbank:YP_001533111.1,GeneID:5713335;gbkey=CDS;gene=eda;product=KHG%2FKDPG aldolase;protein_id=YP_001533111.1;transl_table=11
NC_009952.1	RefSeq	gene	1835700	1837505	.	-	.	ID=gene1793;Name=edd;Dbxref=GeneID:5713336;gbkey=Gene;gene=edd;locus_tag=Dshi_1769
NC_009952.1	RefSeq	CDS	1835700	1837505	.	-	0	ID=cds1763;Name=YP_001533112.1;Parent=gene1793;Note=catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate;Dbxref=Genbank:YP_001533112.1,GeneID:5713336;gbkey=CDS;gene=edd;product=phosphogluconate dehydratase;protein_id=YP_001533112.1;transl_table=11
NC_009952.1	RefSeq	gene	1837632	1837898	.	+	.	ID=gene1794;Name=Dshi_1770;Dbxref=GeneID:5713337;gbkey=Gene;locus_tag=Dshi_1770
NC_009952.1	RefSeq	CDS	1837632	1837898	.	+	0	ID=cds1764;Name=YP_001533113.1;Parent=gene1794;Dbxref=Genbank:YP_001533113.1,GeneID:5713337;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533113.1;transl_table=11
NC_009952.1	RefSeq	gene	1838034	1839236	.	+	.	ID=gene1795;Name=Dshi_1771;Dbxref=GeneID:5713338;gbkey=Gene;locus_tag=Dshi_1771
NC_009952.1	RefSeq	CDS	1838034	1839236	.	+	0	ID=cds1765;Name=YP_001533114.1;Parent=gene1795;Note=COG: COG1092 - Predicted SAM-dependent methyltransferases%3B PFAM: PF03602%3B SUPERFAMILY: SSF53335%3B SWISSPROT P75876: UPF0064 protein yccW%3B similar to methyltransferase;Dbxref=Genbank:YP_001533114.1,GeneID:5713338;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533114.1;transl_table=11
NC_009952.1	RefSeq	gene	1839233	1839772	.	+	.	ID=gene1796;Name=Dshi_1772;Dbxref=GeneID:5713339;gbkey=Gene;locus_tag=Dshi_1772
NC_009952.1	RefSeq	CDS	1839233	1839772	.	+	0	ID=cds1766;Name=YP_001533115.1;Parent=gene1796;Dbxref=Genbank:YP_001533115.1,GeneID:5713339;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533115.1;transl_table=11
NC_009952.1	RefSeq	gene	1839968	1840660	.	-	.	ID=gene1797;Name=Dshi_1773;Dbxref=GeneID:5713340;gbkey=Gene;locus_tag=Dshi_1773
NC_009952.1	RefSeq	CDS	1839968	1840660	.	-	0	ID=cds1767;Name=YP_001533116.1;Parent=gene1797;Note=SWISSPROT P25894: Uncharacterized metalloprotease yggG%3B PANTHER: OMA1 HOMOLOG%2C ZINC METALLOPEPTIDASE %28PTHR22726%29%3B PFAM: PF01435;Dbxref=Genbank:YP_001533116.1,GeneID:5713340;gbkey=CDS;product=putative metalloprotease;protein_id=YP_001533116.1;transl_table=11
NC_009952.1	RefSeq	gene	1840700	1840987	.	-	.	ID=gene1798;Name=Dshi_1774;Dbxref=GeneID:5713341;gbkey=Gene;locus_tag=Dshi_1774
NC_009952.1	RefSeq	CDS	1840700	1840987	.	-	0	ID=cds1768;Name=YP_001533117.1;Parent=gene1798;Dbxref=Genbank:YP_001533117.1,GeneID:5713341;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533117.1;transl_table=11
NC_009952.1	RefSeq	gene	1841055	1843865	.	-	.	ID=gene1799;Name=Dshi_1775;Dbxref=GeneID:5713342;gbkey=Gene;locus_tag=Dshi_1775
NC_009952.1	RefSeq	CDS	1841055	1843865	.	-	0	ID=cds1769;Name=YP_001533118.1;Parent=gene1799;Note=PFAM: PF03710%3B COG: COG1391 - Glutamine synthetase adenylyltransferase;Dbxref=Genbank:YP_001533118.1,GeneID:5713342;gbkey=CDS;product=putative glutamate--ammonia ligase adenyltransferase;protein_id=YP_001533118.1;transl_table=11
NC_009952.1	RefSeq	gene	1843959	1844033	.	-	.	ID=gene1800;Name=Dshi_6031;Dbxref=GeneID:5713343;gbkey=Gene;locus_tag=Dshi_6031
NC_009952.1	RefSeq	tRNA	1843959	1844033	.	-	.	ID=rna30;Parent=gene1800;Dbxref=GeneID:5713343;codons=51;gbkey=tRNA;product=tRNA-Val
NC_009952.1	RefSeq	exon	1843959	1844033	.	-	.	ID=id34;Parent=rna30;Dbxref=GeneID:5713343;codons=51;gbkey=tRNA;product=tRNA-Val
NC_009952.1	RefSeq	gene	1844200	1844541	.	+	.	ID=gene1801;Name=Dshi_1776;Dbxref=GeneID:5713344;gbkey=Gene;locus_tag=Dshi_1776
NC_009952.1	RefSeq	CDS	1844200	1844541	.	+	0	ID=cds1770;Name=YP_001533119.1;Parent=gene1801;Note=SWISSPROT P0ADU5: Protein ygiW %5BPrecursor%5D%3B Gene3D: G3DSA:2.40.50.200%3B SUPERFAMILY: SSF101756%3B similar to hypothetical protein ygiW;Dbxref=Genbank:YP_001533119.1,GeneID:5713344;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533119.1;transl_table=11
NC_009952.1	RefSeq	gene	1844619	1847027	.	-	.	ID=gene1802;Name=lon;Dbxref=GeneID:5713345;gbkey=Gene;gene=lon;locus_tag=Dshi_1777
NC_009952.1	RefSeq	CDS	1844619	1847027	.	-	0	ID=cds1771;Name=YP_001533120.1;Parent=gene1802;Note=SWISSPROT P0A9M0: ATP-dependent protease La%3B TIGRFAM: TIGR00763 ATP-dependent protease La%2C TIGR00764 lon-related putative ATP-dependent protease%3B COG: COG0466%3B PFAM: PF02190%2C PF00004%2C PF05362%3B SMART: SM00382%3B SPRINT: SM00464;Dbxref=Genbank:YP_001533120.1,GeneID:5713345;gbkey=CDS;gene=lon;product=ATP-dependent protease La;protein_id=YP_001533120.1;transl_table=11
NC_009952.1	RefSeq	gene	1847401	1848006	.	+	.	ID=gene1803;Name=Dshi_1778;Dbxref=GeneID:5713346;gbkey=Gene;locus_tag=Dshi_1778
NC_009952.1	RefSeq	CDS	1847401	1848006	.	+	0	ID=cds1772;Name=YP_001533121.1;Parent=gene1803;Dbxref=Genbank:YP_001533121.1,GeneID:5713346;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533121.1;transl_table=11
NC_009952.1	RefSeq	gene	1848348	1850105	.	+	.	ID=gene1804;Name=ilvI;Dbxref=GeneID:5713347;gbkey=Gene;gene=ilvI;locus_tag=Dshi_1779
NC_009952.1	RefSeq	CDS	1848348	1850105	.	+	0	ID=cds1773;Name=YP_001533122.1;Parent=gene1804;Note=SWISSPROT P00893: Acetolactate synthase isozyme 3 large subunit%3B TIGRFAM: TIGR00118 acetolactate synthase%2C large subunit%2C biosynthetic type%3B COG: COG0028 - Thiamine pyrophosphate-requiring enzymes %5Bacetolactate synthase%2C pyruvate dehydrogenase %28cytochrome%29%2C glyoxylate carboligase%2C phosphonopyruvate decarboxylase%5D%3B PFAM: PF02775%2C PF00205%2C PF02776;Dbxref=Genbank:YP_001533122.1,GeneID:5713347;gbkey=CDS;gene=ilvI;product=acetolactate synthase 3 catalytic subunit;protein_id=YP_001533122.1;transl_table=11
NC_009952.1	RefSeq	gene	1850105	1850416	.	+	.	ID=gene1805;Name=ilvI;Dbxref=GeneID:5713348;gbkey=Gene;gene=ilvI;locus_tag=Dshi_1780
NC_009952.1	RefSeq	CDS	1850105	1850416	.	+	0	ID=cds1774;Name=YP_001533123.1;Parent=gene1805;Note=PROSITE: PS51257;Dbxref=Genbank:YP_001533123.1,GeneID:5713348;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533123.1;transl_table=11
NC_009952.1	RefSeq	gene	1850474	1851046	.	+	.	ID=gene1806;Name=ilvH;Dbxref=GeneID:5713349;gbkey=Gene;gene=ilvH;locus_tag=Dshi_1781
NC_009952.1	RefSeq	CDS	1850474	1851046	.	+	0	ID=cds1775;Name=YP_001533124.1;Parent=gene1806;Note=with IlvI catalyzes the formation of 2-acetolactate from pyruvate%2C the small subunit is required for full activity and valine sensitivity%3B E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates%2C valine sensitivity and affinity for cofactors%3B also known as acetolactate synthase 3 small subunit;Dbxref=Genbank:YP_001533124.1,GeneID:5713349;gbkey=CDS;gene=ilvH;product=acetolactate synthase 3 regulatory subunit;protein_id=YP_001533124.1;transl_table=11
NC_009952.1	RefSeq	gene	1851151	1852302	.	+	.	ID=gene1807;Name=Dshi_1782;Dbxref=GeneID:5713350;gbkey=Gene;locus_tag=Dshi_1782
NC_009952.1	RefSeq	CDS	1851151	1852302	.	+	0	ID=cds1776;Name=YP_001533125.1;Parent=gene1807;Note=SWISSPROT P0ABR7: Putative dioxygenase subunit alpha yeaW%3B PFAM: PF00355%3B SPRINT: PR00090;Dbxref=Genbank:YP_001533125.1,GeneID:5713350;gbkey=CDS;product=putative ring-hydroxylating dioxygenase subunit alpha;protein_id=YP_001533125.1;transl_table=11
NC_009952.1	RefSeq	gene	1852555	1852800	.	-	.	ID=gene1808;Name=Dshi_1783;Dbxref=GeneID:5713351;gbkey=Gene;locus_tag=Dshi_1783
NC_009952.1	RefSeq	CDS	1852555	1852800	.	-	0	ID=cds1777;Name=YP_001533126.1;Parent=gene1808;Note=PROSITE: PS00018;Dbxref=Genbank:YP_001533126.1,GeneID:5713351;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533126.1;transl_table=11
NC_009952.1	RefSeq	gene	1853035	1853577	.	+	.	ID=gene1809;Name=Dshi_1784;Dbxref=GeneID:5713352;gbkey=Gene;locus_tag=Dshi_1784
NC_009952.1	RefSeq	CDS	1853035	1853577	.	+	0	ID=cds1778;Name=YP_001533127.1;Parent=gene1809;Note=TIGRFAM: TIGR02937 RNA polymerase sigma factor%2C sigma-70 family%3B COG: COG1595 - DNA-directed RNA polymerase specialized sigma subunit%2C sigma24 homolog%3B PFAM: PF08281%2C PF04542;Dbxref=Genbank:YP_001533127.1,GeneID:5713352;gbkey=CDS;product=putative RNA polymerase sigma factor;protein_id=YP_001533127.1;transl_table=11
NC_009952.1	RefSeq	gene	1854290	1857964	.	-	.	ID=gene1810;Name=nrdJ;Dbxref=GeneID:5713353;gbkey=Gene;gene=nrdJ;locus_tag=Dshi_1785
NC_009952.1	RefSeq	CDS	1854290	1857964	.	-	0	ID=cds1779;Name=YP_001533128.1;Parent=gene1810;Note=Catalyzes the rate-limiting step in dNTP synthesis;Dbxref=Genbank:YP_001533128.1,GeneID:5713353;gbkey=CDS;gene=nrdJ;product=ribonucleotide-diphosphate reductase subunit alpha;protein_id=YP_001533128.1;transl_table=11
NC_009952.1	RefSeq	gene	1858657	1859097	.	+	.	ID=gene1811;Name=Dshi_1786;Dbxref=GeneID:5713354;gbkey=Gene;locus_tag=Dshi_1786
NC_009952.1	RefSeq	CDS	1858657	1859097	.	+	0	ID=cds1780;Name=YP_001533129.1;Parent=gene1811;Dbxref=Genbank:YP_001533129.1,GeneID:5713354;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533129.1;transl_table=11
NC_009952.1	RefSeq	gene	1859262	1859338	.	-	.	ID=gene1812;Name=Dshi_6032;Dbxref=GeneID:5713355;gbkey=Gene;locus_tag=Dshi_6032
NC_009952.1	RefSeq	tRNA	1859262	1859338	.	-	.	ID=rna31;Parent=gene1812;Dbxref=GeneID:5713355;codons=22;gbkey=tRNA;product=tRNA-Pro
NC_009952.1	RefSeq	exon	1859262	1859338	.	-	.	ID=id35;Parent=rna31;Dbxref=GeneID:5713355;codons=22;gbkey=tRNA;product=tRNA-Pro
NC_009952.1	RefSeq	gene	1859391	1859876	.	-	.	ID=gene1813;Name=Dshi_1787;Dbxref=GeneID:5713356;gbkey=Gene;locus_tag=Dshi_1787
NC_009952.1	RefSeq	CDS	1859391	1859876	.	-	0	ID=cds1781;Name=YP_001533130.1;Parent=gene1813;Note=COG: COG1430 - Uncharacterized conserved protein%3B PFAM: PF02643;Dbxref=Genbank:YP_001533130.1,GeneID:5713356;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533130.1;transl_table=11
NC_009952.1	RefSeq	gene	1859873	1860394	.	-	.	ID=gene1814;Name=Dshi_1788;Dbxref=GeneID:5713357;gbkey=Gene;locus_tag=Dshi_1788
NC_009952.1	RefSeq	CDS	1859873	1860394	.	-	0	ID=cds1782;Name=YP_001533131.1;Parent=gene1814;Note=SWISSPROT P32081: Cold shock protein cspB%3B COG: COG1278 - Cold shock proteins%3B PFAM: PF00313%3B SMART: SM00357%3B SPRINT: PR00050;Dbxref=Genbank:YP_001533131.1,GeneID:5713357;gbkey=CDS;product=putative cold shock protein;protein_id=YP_001533131.1;transl_table=11
NC_009952.1	RefSeq	gene	1860527	1861132	.	-	.	ID=gene1815;Name=pdxH;Dbxref=GeneID:5713358;gbkey=Gene;gene=pdxH;locus_tag=Dshi_1789
NC_009952.1	RefSeq	CDS	1860527	1861132	.	-	0	ID=cds1783;Name=YP_001533132.1;Parent=gene1815;Note=TIGRFAM: TIGR00558 pyridoxamine-phosphate oxidase%3B COG: COG0259%3B PFAM: PF01243%3B PROSITE: PS01064%3B SUPERFAMILY: SSF50475;Dbxref=Genbank:YP_001533132.1,GeneID:5713358;gbkey=CDS;gene=pdxH;product=pyridoxamine 5%27-phosphate oxidase;protein_id=YP_001533132.1;transl_table=11
NC_009952.1	RefSeq	gene	1861237	1862055	.	+	.	ID=gene1816;Name=fabI2;Dbxref=GeneID:5713359;gbkey=Gene;gene=fabI2;locus_tag=Dshi_1790
NC_009952.1	RefSeq	CDS	1861237	1862055	.	+	0	ID=cds1784;Name=YP_001533133.1;Parent=gene1816;Note=SWISSPROT O24990: Enoyl-%5Bacyl-carrier-protein%5D reductase %5BNADH%5D%3B COG: COG0623 - Enoyl-%5Bacyl-carrier-protein%5D reductase %28NADH%29%3B PFAM: PF00106%3B SPRINT: PR00081;Dbxref=Genbank:YP_001533133.1,GeneID:5713359;gbkey=CDS;gene=fabI2;product=NADH dependent enoyl-%5Bacyl-carrier-protein%5D reductase;protein_id=YP_001533133.1;transl_table=11
NC_009952.1	RefSeq	gene	1862057	1862668	.	+	.	ID=gene1817;Name=Dshi_1791;Dbxref=GeneID:5713360;gbkey=Gene;locus_tag=Dshi_1791
NC_009952.1	RefSeq	CDS	1862057	1862668	.	+	0	ID=cds1785;Name=YP_001533134.1;Parent=gene1817;Note=PFAM: PF01810-LysE type translocator%3B COG: COG1280 - Putative threonine efflux protein%3B SWISSPROT P0AG38: Threonine efflux protein %28rhtC%29;Dbxref=Genbank:YP_001533134.1,GeneID:5713360;gbkey=CDS;product=putative LysE type translocator;protein_id=YP_001533134.1;transl_table=11
NC_009952.1	RefSeq	gene	1862665	1863276	.	+	.	ID=gene1818;Name=Dshi_1792;Dbxref=GeneID:5713361;gbkey=Gene;locus_tag=Dshi_1792
NC_009952.1	RefSeq	CDS	1862665	1863276	.	+	0	ID=cds1786;Name=YP_001533135.1;Parent=gene1818;Note=PFAM: PF01810-LysE type translocator%3B COG: COG1280 - Putative threonine efflux protein%3B SWISSPROT P0AG38: Threonine efflux protein %28rhtC%29;Dbxref=Genbank:YP_001533135.1,GeneID:5713361;gbkey=CDS;product=putative LysE type translocator;protein_id=YP_001533135.1;transl_table=11
NC_009952.1	RefSeq	gene	1863339	1863842	.	+	.	ID=gene1819;Name=gpt;Dbxref=GeneID:5713362;gbkey=Gene;gene=gpt;locus_tag=Dshi_1793
NC_009952.1	RefSeq	CDS	1863339	1863842	.	+	0	ID=cds1787;Name=YP_001533136.1;Parent=gene1819;Note=catalyzes the conversion of guanine%2C xanthine and%2C to a lesser extent%2C hypoxanthine to GMP%2C XMP and IMP%2C respectively;Dbxref=Genbank:YP_001533136.1,GeneID:5713362;gbkey=CDS;gene=gpt;product=xanthine-guanine phosphoribosyltransferase;protein_id=YP_001533136.1;transl_table=11
NC_009952.1	RefSeq	gene	1863844	1865025	.	+	.	ID=gene1820;Name=Dshi_1794;Dbxref=GeneID:5713363;gbkey=Gene;locus_tag=Dshi_1794
NC_009952.1	RefSeq	CDS	1863844	1865025	.	+	0	ID=cds1788;Name=YP_001533137.1;Parent=gene1820;Note=COG: COG0436 - Aspartate%2Ftyrosine%2Faromatic aminotransferase%3B PFAM: PF00155%3B SPRINT: PR00753%3B Gene3D: G3DSA:3.40.640.10%3B SUPERFAMILY: SSF53383;Dbxref=Genbank:YP_001533137.1,GeneID:5713363;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533137.1;transl_table=11
NC_009952.1	RefSeq	gene	1865219	1867063	.	+	.	ID=gene1821;Name=Dshi_1795;Dbxref=GeneID:5713364;gbkey=Gene;locus_tag=Dshi_1795
NC_009952.1	RefSeq	CDS	1865219	1867063	.	+	0	ID=cds1789;Name=YP_001533138.1;Parent=gene1821;Note=SWISSPROT P0ADY1: Peptidyl-prolyl cis-trans isomerase D%3B SUPERFAMILY: SSF54534%2C SSF81827;Dbxref=Genbank:YP_001533138.1,GeneID:5713364;gbkey=CDS;product=putative peptidyl-prolyl cis-trans isomerase;protein_id=YP_001533138.1;transl_table=11
NC_009952.1	RefSeq	gene	1867111	1868640	.	+	.	ID=gene1822;Name=trpE;Dbxref=GeneID:5712784;gbkey=Gene;gene=trpE;locus_tag=Dshi_1796
NC_009952.1	RefSeq	CDS	1867111	1868640	.	+	0	ID=cds1790;Name=YP_001533139.1;Parent=gene1822;Note=with component II%2C the glutamine amidotransferase%2C catalyzes the formation of anthranilate from chorismate and glutamine;Dbxref=Genbank:YP_001533139.1,GeneID:5712784;gbkey=CDS;gene=trpE;product=anthranilate synthase component I;protein_id=YP_001533139.1;transl_table=11
NC_009952.1	RefSeq	gene	1868767	1870593	.	-	.	ID=gene1823;Name=Dshi_1797;Dbxref=GeneID:5712785;gbkey=Gene;locus_tag=Dshi_1797
NC_009952.1	RefSeq	CDS	1868767	1870593	.	-	0	ID=cds1791;Name=YP_001533140.1;Parent=gene1823;Note=PFAM: PF04748;Dbxref=Genbank:YP_001533140.1,GeneID:5712785;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533140.1;transl_table=11
NC_009952.1	RefSeq	gene	1870777	1871382	.	+	.	ID=gene1824;Name=trpG;Dbxref=GeneID:5712786;gbkey=Gene;gene=trpG;locus_tag=Dshi_1798
NC_009952.1	RefSeq	CDS	1870777	1871382	.	+	0	ID=cds1792;Name=YP_001533141.1;Parent=gene1824;Note=TrpG%3B with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine%3B TrpG provides the glutamine amidotransferase activity;Dbxref=Genbank:YP_001533141.1,GeneID:5712786;gbkey=CDS;gene=trpG;product=anthranilate synthase component II;protein_id=YP_001533141.1;transl_table=11
NC_009952.1	RefSeq	gene	1871379	1872398	.	+	.	ID=gene1825;Name=trpD;Dbxref=GeneID:5712787;gbkey=Gene;gene=trpD;locus_tag=Dshi_1799
NC_009952.1	RefSeq	CDS	1871379	1872398	.	+	0	ID=cds1793;Name=YP_001533142.1;Parent=gene1825;Note=Catalyzes the conversion of N-%285-phospho-D-ribosyl%29-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate;Dbxref=Genbank:YP_001533142.1,GeneID:5712787;gbkey=CDS;gene=trpD;product=anthranilate phosphoribosyltransferase;protein_id=YP_001533142.1;transl_table=11
NC_009952.1	RefSeq	gene	1872395	1873210	.	+	.	ID=gene1826;Name=trpC;Dbxref=GeneID:5712788;gbkey=Gene;gene=trpC;locus_tag=Dshi_1800
NC_009952.1	RefSeq	CDS	1872395	1873210	.	+	0	ID=cds1794;Name=YP_001533143.1;Parent=gene1826;Note=involved in tryptophan biosynthesis%3B amino acid biosynthesis%3B converts 1-%282-carboxyphenylamino%29-1-deoxy-D-ribulose 5-phosphate to C%281%29-%283-indolyl%29-glycerol 3-phosphate and carbon dioxide and water;Dbxref=Genbank:YP_001533143.1,GeneID:5712788;gbkey=CDS;gene=trpC;product=Indole-3-glycerol phosphate synthase;protein_id=YP_001533143.1;transl_table=11
NC_009952.1	RefSeq	gene	1873207	1873683	.	+	.	ID=gene1827;Name=moaC;Dbxref=GeneID:5712789;gbkey=Gene;gene=moaC;locus_tag=Dshi_1801
NC_009952.1	RefSeq	CDS	1873207	1873683	.	+	0	ID=cds1795;Name=YP_001533144.1;Parent=gene1827;Note=MoaC%3B along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z%3B involved in molybdenum cofactor biosynthesis;Dbxref=Genbank:YP_001533144.1,GeneID:5712789;gbkey=CDS;gene=moaC;product=molybdenum cofactor biosynthesis protein MoaC;protein_id=YP_001533144.1;transl_table=11
NC_009952.1	RefSeq	gene	1873680	1874888	.	+	.	ID=gene1828;Name=moeA1;Dbxref=GeneID:5712790;gbkey=Gene;gene=moeA1;locus_tag=Dshi_1802
NC_009952.1	RefSeq	CDS	1873680	1874888	.	+	0	ID=cds1796;Name=YP_001533145.1;Parent=gene1828;Note=SWISSPROT P12281: Molybdopterin biosynthesis protein moeA%3B TIGRFAM: TIGR00177%3B PFAM: pfam03453%2C pfam00994%2C pfam03454%3B COG: COG0303 - Molybdopterin biosynthesis enzyme;Dbxref=Genbank:YP_001533145.1,GeneID:5712790;gbkey=CDS;gene=moeA1;product=molybdopterin biosynthesis protein;protein_id=YP_001533145.1;transl_table=11
NC_009952.1	RefSeq	gene	1875043	1875738	.	+	.	ID=gene1829;Name=lexA;Dbxref=GeneID:5712791;gbkey=Gene;gene=lexA;locus_tag=Dshi_1803
NC_009952.1	RefSeq	CDS	1875043	1875738	.	+	0	ID=cds1797;Name=YP_001533146.1;Parent=gene1829;Note=Represses a number of genes involved in the response to DNA damage;Dbxref=Genbank:YP_001533146.1,GeneID:5712791;gbkey=CDS;gene=lexA;product=LexA repressor;protein_id=YP_001533146.1;transl_table=11
NC_009952.1	RefSeq	gene	1875927	1878011	.	-	.	ID=gene1830;Name=Dshi_1804;Dbxref=GeneID:5712792;gbkey=Gene;locus_tag=Dshi_1804
NC_009952.1	RefSeq	CDS	1875927	1878011	.	-	0	ID=cds1798;Name=YP_001533147.1;Parent=gene1830;Note=PFAM: PF03772%3B TIGRFAM: TIGR00360;Dbxref=Genbank:YP_001533147.1,GeneID:5712792;gbkey=CDS;product=putative competence protein;protein_id=YP_001533147.1;transl_table=11
NC_009952.1	RefSeq	gene	1878120	1879535	.	+	.	ID=gene1831;Name=gltX;Dbxref=GeneID:5712793;gbkey=Gene;gene=gltX;locus_tag=Dshi_1805
NC_009952.1	RefSeq	CDS	1878120	1879535	.	+	0	ID=cds1799;Name=YP_001533148.1;Parent=gene1831;Note=Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation;Dbxref=Genbank:YP_001533148.1,GeneID:5712793;gbkey=CDS;gene=gltX;product=glutamyl-tRNA synthetase;protein_id=YP_001533148.1;transl_table=11
NC_009952.1	RefSeq	gene	1879651	1880943	.	+	.	ID=gene1832;Name=gltA2;Dbxref=GeneID:5712794;gbkey=Gene;gene=gltA2;locus_tag=Dshi_1806
NC_009952.1	RefSeq	CDS	1879651	1880943	.	+	0	ID=cds1800;Name=YP_001533149.1;Parent=gene1832;Note=SWISSPROT P0ABH7: Citrate synthase%3B TIGR01798 citrate synthase I %28hexameric type%29%3B COG: COG0372%3B PFAM: PF00285%3B PROSITE: PS00480%3B PRINTS: PR00143;Dbxref=Genbank:YP_001533149.1,GeneID:5712794;gbkey=CDS;gene=gltA2;product=citrate synthase;protein_id=YP_001533149.1;transl_table=11
NC_009952.1	RefSeq	gene	1881214	1881651	.	+	.	ID=gene1833;Name=Dshi_1807;Dbxref=GeneID:5712795;gbkey=Gene;locus_tag=Dshi_1807
NC_009952.1	RefSeq	CDS	1881214	1881651	.	+	0	ID=cds1801;Name=YP_001533150.1;Parent=gene1833;Note=PFAM: PF00582%3B PRINTS: PR01438;Dbxref=Genbank:YP_001533150.1,GeneID:5712795;gbkey=CDS;product=putative universal stress protein;protein_id=YP_001533150.1;transl_table=11
NC_009952.1	RefSeq	gene	1881663	1883201	.	+	.	ID=gene1834;Name=Dshi_1808;Dbxref=GeneID:5712796;gbkey=Gene;locus_tag=Dshi_1808
NC_009952.1	RefSeq	CDS	1881663	1883201	.	+	0	ID=cds1802;Name=YP_001533151.1;Parent=gene1834;Note=PFAM PF01235: Sodium:alanine symporter family%3B TIGRFAM: TIGR00835 amino acid carrier protein%3B COG: COG1115 - Na%2B%2Falanine symporter%3B PRINTS: PR00175;Dbxref=Genbank:YP_001533151.1,GeneID:5712796;gbkey=CDS;product=putative sodium:alanine symporter family protein;protein_id=YP_001533151.1;transl_table=11
NC_009952.1	RefSeq	gene	1883361	1886222	.	-	.	ID=gene1835;Name=uvrA;Dbxref=GeneID:5712797;gbkey=Gene;gene=uvrA;locus_tag=Dshi_1809
NC_009952.1	RefSeq	CDS	1883361	1886222	.	-	0	ID=cds1803;Name=YP_001533152.1;Parent=gene1835;Note=The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB%2C the uvrA molecules dissociate;Dbxref=Genbank:YP_001533152.1,GeneID:5712797;gbkey=CDS;gene=uvrA;product=excinuclease ABC subunit A;protein_id=YP_001533152.1;transl_table=11
NC_009952.1	RefSeq	gene	1886324	1887496	.	-	.	ID=gene1836;Name=Dshi_1810;Dbxref=GeneID:5712798;gbkey=Gene;locus_tag=Dshi_1810
NC_009952.1	RefSeq	CDS	1886324	1887496	.	-	0	ID=cds1804;Name=YP_001533153.1;Parent=gene1836;Note=PFAM PF07690: Major facilitator superfamily%3B PROSITE: PS50850;Dbxref=Genbank:YP_001533153.1,GeneID:5712798;gbkey=CDS;product=putative major facilitator superfamily transport protein;protein_id=YP_001533153.1;transl_table=11
NC_009952.1	RefSeq	gene	1887561	1888958	.	-	.	ID=gene1837;Name=lpdV;Dbxref=GeneID:5712799;gbkey=Gene;gene=lpdV;locus_tag=Dshi_1811
NC_009952.1	RefSeq	CDS	1887561	1888958	.	-	0	ID=cds1805;Name=YP_001533154.1;Parent=gene1837;Note=E3 component of pyruvate complex%3B catalyzes the oxidation of dihydrolipoamide to lipoamide;Dbxref=Genbank:YP_001533154.1,GeneID:5712799;gbkey=CDS;gene=lpdV;product=dihydrolipoamide dehydrogenase;protein_id=YP_001533154.1;transl_table=11
NC_009952.1	RefSeq	gene	1889023	1889616	.	-	.	ID=gene1838;Name=Dshi_1812;Dbxref=GeneID:5712800;gbkey=Gene;locus_tag=Dshi_1812
NC_009952.1	RefSeq	CDS	1889023	1889616	.	-	0	ID=cds1806;Name=YP_001533155.1;Parent=gene1838;Note=PFAM: PF06041;Dbxref=Genbank:YP_001533155.1,GeneID:5712800;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533155.1;transl_table=11
NC_009952.1	RefSeq	gene	1889690	1890979	.	-	.	ID=gene1839;Name=Dshi_1813;Dbxref=GeneID:5712801;gbkey=Gene;locus_tag=Dshi_1813
NC_009952.1	RefSeq	CDS	1889690	1890979	.	-	0	ID=cds1807;Name=YP_001533156.1;Parent=gene1839;Note=PFAM PF07690: Major facilitator superfamily%3B PROSITE: PS50850;Dbxref=Genbank:YP_001533156.1,GeneID:5712801;gbkey=CDS;product=major facilitator superfamiy transporter;protein_id=YP_001533156.1;transl_table=11
NC_009952.1	RefSeq	gene	1891102	1891178	.	-	.	ID=gene1840;Name=Dshi_6033;Dbxref=GeneID:5712802;gbkey=Gene;locus_tag=Dshi_6033
NC_009952.1	RefSeq	tRNA	1891102	1891178	.	-	.	ID=rna32;Parent=gene1840;Dbxref=GeneID:5712802;codons=57;gbkey=tRNA;product=tRNA-Asp
NC_009952.1	RefSeq	exon	1891102	1891178	.	-	.	ID=id36;Parent=rna32;Dbxref=GeneID:5712802;codons=57;gbkey=tRNA;product=tRNA-Asp
NC_009952.1	RefSeq	gene	1891285	1891361	.	-	.	ID=gene1841;Name=Dshi_6034;Dbxref=GeneID:5712803;gbkey=Gene;locus_tag=Dshi_6034
NC_009952.1	RefSeq	tRNA	1891285	1891361	.	-	.	ID=rna33;Parent=gene1841;Dbxref=GeneID:5712803;codons=57;gbkey=tRNA;product=tRNA-Asp
NC_009952.1	RefSeq	exon	1891285	1891361	.	-	.	ID=id37;Parent=rna33;Dbxref=GeneID:5712803;codons=57;gbkey=tRNA;product=tRNA-Asp
NC_009952.1	RefSeq	gene	1891703	1892863	.	+	.	ID=gene1842;Name=Dshi_1814;Dbxref=GeneID:5712804;gbkey=Gene;locus_tag=Dshi_1814
NC_009952.1	RefSeq	CDS	1891703	1892863	.	+	0	ID=cds1808;Name=YP_001533157.1;Parent=gene1842;Note=PROSITE: PS00018;Dbxref=Genbank:YP_001533157.1,GeneID:5712804;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533157.1;transl_table=11
NC_009952.1	RefSeq	gene	1893248	1894045	.	-	.	ID=gene1843;Name=Dshi_1815;Dbxref=GeneID:5712805;gbkey=Gene;locus_tag=Dshi_1815
NC_009952.1	RefSeq	CDS	1893248	1894045	.	-	0	ID=cds1809;Name=YP_001533158.1;Parent=gene1843;Note=PFAM: PF00196%2C PF03472%3B SMART: SM00421%3B PROSITE: PS50043%3B COG: COG2197 - Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain%3B HTH type;Dbxref=Genbank:YP_001533158.1,GeneID:5712805;gbkey=CDS;product=putative transcriptional regulator;protein_id=YP_001533158.1;transl_table=11
NC_009952.1	RefSeq	gene	1894133	1895479	.	-	.	ID=gene1844;Name=Dshi_1816;Dbxref=GeneID:5712806;gbkey=Gene;locus_tag=Dshi_1816
NC_009952.1	RefSeq	CDS	1894133	1895479	.	-	0	ID=cds1810;Name=YP_001533159.1;Parent=gene1844;Note=COG3264 - Small-conductance mechanosensitive channel%3B PFAM: PF00924%3B SUPERFAMILY: SSF50182%2C SSF82861%2C SSF82689;Dbxref=Genbank:YP_001533159.1,GeneID:5712806;gbkey=CDS;product=mscS family protein;protein_id=YP_001533159.1;transl_table=11
NC_009952.1	RefSeq	gene	1895702	1896640	.	-	.	ID=gene1845;Name=Dshi_1817;Dbxref=GeneID:5712807;gbkey=Gene;locus_tag=Dshi_1817
NC_009952.1	RefSeq	CDS	1895702	1896640	.	-	0	ID=cds1811;Name=YP_001533160.1;Parent=gene1845;Note=COG1741 - Pirin-related protein%3B PFAM: PF05726%2C PF02678;Dbxref=Genbank:YP_001533160.1,GeneID:5712807;gbkey=CDS;product=pirin-like protein;protein_id=YP_001533160.1;transl_table=11
NC_009952.1	RefSeq	gene	1896712	1896984	.	-	.	ID=gene1846;Name=Dshi_1818;Dbxref=GeneID:5712808;gbkey=Gene;locus_tag=Dshi_1818
NC_009952.1	RefSeq	CDS	1896712	1896984	.	-	0	ID=cds1812;Name=YP_001533161.1;Parent=gene1846;Dbxref=Genbank:YP_001533161.1,GeneID:5712808;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533161.1;transl_table=11
NC_009952.1	RefSeq	gene	1897085	1897816	.	-	.	ID=gene1847;Name=Dshi_1819;Dbxref=GeneID:5712809;gbkey=Gene;locus_tag=Dshi_1819
NC_009952.1	RefSeq	CDS	1897085	1897816	.	-	0	ID=cds1813;Name=YP_001533162.1;Parent=gene1847;Note=PFAM: PF00196%2C PF03472%3B SMART: SM00421%3B PROSITE: PS50043%3B COG: COG2197 - Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain%3B HTH type;Dbxref=Genbank:YP_001533162.1,GeneID:5712809;gbkey=CDS;product=putative transcriptional regulator;protein_id=YP_001533162.1;transl_table=11
NC_009952.1	RefSeq	gene	1897975	1898050	.	-	.	ID=gene1848;Name=Dshi_6035;Dbxref=GeneID:5712810;gbkey=Gene;locus_tag=Dshi_6035
NC_009952.1	RefSeq	tRNA	1897975	1898050	.	-	.	ID=rna34;Parent=gene1848;Dbxref=GeneID:5712810;codons=50;gbkey=tRNA;product=tRNA-Val
NC_009952.1	RefSeq	exon	1897975	1898050	.	-	.	ID=id38;Parent=rna34;Dbxref=GeneID:5712810;codons=50;gbkey=tRNA;product=tRNA-Val
NC_009952.1	RefSeq	gene	1898151	1898933	.	+	.	ID=gene1849;Name=Dshi_1820;Dbxref=GeneID:5712811;gbkey=Gene;locus_tag=Dshi_1820
NC_009952.1	RefSeq	CDS	1898151	1898933	.	+	0	ID=cds1814;Name=YP_001533163.1;Parent=gene1849;Note=catalyzes the hydrolysis of mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate;Dbxref=Genbank:YP_001533163.1,GeneID:5712811;gbkey=CDS;product=mannosyl-3-phosphoglycerate phosphatase;protein_id=YP_001533163.1;transl_table=11
NC_009952.1	RefSeq	gene	1898926	1900176	.	+	.	ID=gene1850;Name=Dshi_1821;Dbxref=GeneID:5712812;gbkey=Gene;locus_tag=Dshi_1821
NC_009952.1	RefSeq	CDS	1898926	1900176	.	+	0	ID=cds1815;Name=YP_001533164.1;Parent=gene1850;Dbxref=Genbank:YP_001533164.1,GeneID:5712812;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533164.1;transl_table=11
NC_009952.1	RefSeq	gene	1900181	1901206	.	+	.	ID=gene1851;Name=Dshi_1822;Dbxref=GeneID:5712813;gbkey=Gene;locus_tag=Dshi_1822
NC_009952.1	RefSeq	CDS	1900181	1901206	.	+	0	ID=cds1816;Name=YP_001533165.1;Parent=gene1851;Note=TIGRFAM: TIGR00832 arsenical-resistance protein%3B COG: COG0798 - Arsenite efflux pump ACR3 and related permeases%3B PFAM: PF01758;Dbxref=Genbank:YP_001533165.1,GeneID:5712813;gbkey=CDS;product=putative arsenic resistance protein;protein_id=YP_001533165.1;transl_table=11
NC_009952.1	RefSeq	gene	1901376	1902356	.	-	.	ID=gene1852;Name=Dshi_1823;Dbxref=GeneID:5712814;gbkey=Gene;locus_tag=Dshi_1823
NC_009952.1	RefSeq	CDS	1901376	1902356	.	-	0	ID=cds1817;Name=YP_001533166.1;Parent=gene1852;Dbxref=Genbank:YP_001533166.1,GeneID:5712814;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533166.1;transl_table=11
NC_009952.1	RefSeq	gene	1902502	1904265	.	-	.	ID=gene1853;Name=Dshi_1824;Dbxref=GeneID:5712815;gbkey=Gene;locus_tag=Dshi_1824
NC_009952.1	RefSeq	CDS	1902502	1904265	.	-	0	ID=cds1818;Name=YP_001533167.1;Parent=gene1853;Note=SWISSPROT P76041: Putative sucrose phosphorylase%2C P10249: Sucrose phosphorylase%3B COG: COG0366 - Glycosidases%3B PFAM: PF00128;Dbxref=Genbank:YP_001533167.1,GeneID:5712815;gbkey=CDS;product=putative sucrose phosphorylase;protein_id=YP_001533167.1;transl_table=11
NC_009952.1	RefSeq	gene	1904769	1905794	.	-	.	ID=gene1854;Name=pta1;Dbxref=GeneID:5712816;gbkey=Gene;gene=pta1;locus_tag=Dshi_1825
NC_009952.1	RefSeq	CDS	1904769	1905794	.	-	0	ID=cds1819;Name=YP_001533168.1;Parent=gene1854;Note=SWISSPROT P39646: Posphate acetyltransferase%3B TIGRFAM: TIGR00651%3B COG: COG0280%3B PFAM: PF01515-Phosphate acetyl%2Fbutaryl transferase;Dbxref=Genbank:YP_001533168.1,GeneID:5712816;gbkey=CDS;gene=pta1;product=phosphate acetyl transferase;protein_id=YP_001533168.1;transl_table=11
NC_009952.1	RefSeq	gene	1905847	1906206	.	-	.	ID=gene1855;Name=Dshi_1826;Dbxref=GeneID:5712817;gbkey=Gene;locus_tag=Dshi_1826
NC_009952.1	RefSeq	CDS	1905847	1906206	.	-	0	ID=cds1820;Name=YP_001533169.1;Parent=gene1855;Note=PFAM: PF05899%2C SUPERFAMILY: SSF51182;Dbxref=Genbank:YP_001533169.1,GeneID:5712817;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533169.1;transl_table=11
NC_009952.1	RefSeq	gene	1906223	1907263	.	-	.	ID=gene1856;Name=Dshi_1827;Dbxref=GeneID:5712818;gbkey=Gene;locus_tag=Dshi_1827
NC_009952.1	RefSeq	CDS	1906223	1907263	.	-	0	ID=cds1821;Name=YP_001533170.1;Parent=gene1856;Note=SWISSPROT Q92UW5: UPF0324 membrane protein%3B PFAM: PF03601- conserved hypothetical protein 698%3B TIGRFAM: TIGR00698 conserved hypothetical integral membrane protein%3B COG: COG2855 - Predicted membrane protein;Dbxref=Genbank:YP_001533170.1,GeneID:5712818;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533170.1;transl_table=11
NC_009952.1	RefSeq	gene	1907402	1909183	.	-	.	ID=gene1857;Name=xcs;Dbxref=GeneID:5712819;gbkey=Gene;gene=xcs;locus_tag=Dshi_1828
NC_009952.1	RefSeq	CDS	1907402	1909183	.	-	0	ID=cds1822;Name=YP_001533171.1;Parent=gene1857;Note=catalyzes the formation of acetyl phosphate and sulfite from 2-sulfoacetaldehyde%3B is active when grown on taurine as a sole carbon source;Dbxref=Genbank:YP_001533171.1,GeneID:5712819;gbkey=CDS;gene=xcs;product=sulfoacetaldehyde acetyltransferase;protein_id=YP_001533171.1;transl_table=11
NC_009952.1	RefSeq	gene	1909208	1910602	.	-	.	ID=gene1858;Name=Dshi_1829;Dbxref=GeneID:5712820;gbkey=Gene;locus_tag=Dshi_1829
NC_009952.1	RefSeq	CDS	1909208	1910602	.	-	0	ID=cds1823;Name=YP_001533172.1;Parent=gene1858;Note=PFAM: PF01266%3B COG: COG0665 - Glycine%2FD-amino acid oxidases %28deaminating%29;Dbxref=Genbank:YP_001533172.1,GeneID:5712820;gbkey=CDS;product=putative FAD-dependent oxidoreductase;protein_id=YP_001533172.1;transl_table=11
NC_009952.1	RefSeq	gene	1910630	1911016	.	-	.	ID=gene1859;Name=Dshi_1830;Dbxref=GeneID:5712821;gbkey=Gene;locus_tag=Dshi_1830
NC_009952.1	RefSeq	CDS	1910630	1911016	.	-	0	ID=cds1824;Name=YP_001533173.1;Parent=gene1859;Note=PFAM: PF07366;Dbxref=Genbank:YP_001533173.1,GeneID:5712821;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533173.1;transl_table=11
NC_009952.1	RefSeq	gene	1911041	1911544	.	-	.	ID=gene1860;Name=Dshi_1831;Dbxref=GeneID:5712822;gbkey=Gene;locus_tag=Dshi_1831
NC_009952.1	RefSeq	CDS	1911041	1911544	.	-	0	ID=cds1825;Name=YP_001533174.1;Parent=gene1860;Note=PFAM: PF00582%3B PRINTS: PR01438%3B COG: COG0589 - Universal stress protein UspA and related nucleotide-binding proteins;Dbxref=Genbank:YP_001533174.1,GeneID:5712822;gbkey=CDS;product=putative universal stress protein;protein_id=YP_001533174.1;transl_table=11
NC_009952.1	RefSeq	gene	1911569	1912909	.	-	.	ID=gene1861;Name=siaT;Dbxref=GeneID:5712823;gbkey=Gene;gene=siaT;locus_tag=Dshi_1832
NC_009952.1	RefSeq	CDS	1911569	1912909	.	-	0	ID=cds1826;Name=YP_001533175.1;Parent=gene1861;Note=SWISSPROT P44543: Sialic acid TRAP transporter permease protein siaT%3B TIGRFAM: TIGR00786 TRAP transporter%2C DctM subunit%3B COG: COG1593 - TRAP-type C4-dicarboxylate transport system%2C large permease component%3B PFAM: PF06808-DctM-like transporters;Dbxref=Genbank:YP_001533175.1,GeneID:5712823;gbkey=CDS;gene=siaT;product=sialic acid TRAP transporter permease;protein_id=YP_001533175.1;transl_table=11
NC_009952.1	RefSeq	gene	1912909	1913475	.	-	.	ID=gene1862;Name=siaT;Dbxref=GeneID:5712824;gbkey=Gene;gene=siaT;locus_tag=Dshi_1833
NC_009952.1	RefSeq	CDS	1912909	1913475	.	-	0	ID=cds1827;Name=YP_001533176.1;Parent=gene1862;Note=PFAM: PF04290%3B DctQ component;Dbxref=Genbank:YP_001533176.1,GeneID:5712824;gbkey=CDS;product=putative TRAP transporter;protein_id=YP_001533176.1;transl_table=11
NC_009952.1	RefSeq	gene	1913539	1914555	.	-	.	ID=gene1863;Name=Dshi_1834;Dbxref=GeneID:5712825;gbkey=Gene;locus_tag=Dshi_1834
NC_009952.1	RefSeq	CDS	1913539	1914555	.	-	0	ID=cds1828;Name=YP_001533177.1;Parent=gene1863;Note=SWISSPROT P44542: Sialic acid-binding periplasmic protein siaP%3B TIGRFAM: TIGR00787 tripartite ATP-independent periplasmic transporter solute receptor%2C DctP family%3B COG: COG1638 - TRAP-type C4-dicarboxylate transport system%2C periplasmic component%3B PFAM: PF03480-Bacterial extracellular solute-binding protein%2C family 7%3B siaP;Dbxref=Genbank:YP_001533177.1,GeneID:5712825;gbkey=CDS;product=putative sialic acid-binding periplasmic protein;protein_id=YP_001533177.1;transl_table=11
NC_009952.1	RefSeq	gene	1914712	1916187	.	+	.	ID=gene1864;Name=Dshi_1835;Dbxref=GeneID:5712826;gbkey=Gene;locus_tag=Dshi_1835
NC_009952.1	RefSeq	CDS	1914712	1916187	.	+	0	ID=cds1829;Name=YP_001533178.1;Parent=gene1864;Note=SWISSPROT P77730: Uncharacterized HTH-type transcriptional repressor ydcR%3B COG: COG1167 - Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain %28MocR family%29 and their eukaryotic orthologs%3B PFAM: PF00392%2C PF00155%3B SMART: SM00345 %3B PROSITE: PS50949%3B GntR-type;Dbxref=Genbank:YP_001533178.1,GeneID:5712826;gbkey=CDS;product=putative transcriptional regulator;protein_id=YP_001533178.1;transl_table=11
NC_009952.1	RefSeq	gene	1916616	1916700	.	-	.	ID=gene1865;Name=Dshi_6036;Dbxref=GeneID:5712827;gbkey=Gene;locus_tag=Dshi_6036
NC_009952.1	RefSeq	tRNA	1916616	1916700	.	-	.	ID=rna35;Parent=gene1865;Dbxref=GeneID:5712827;codons=18;gbkey=tRNA;product=tRNA-Leu
NC_009952.1	RefSeq	exon	1916616	1916700	.	-	.	ID=id39;Parent=rna35;Dbxref=GeneID:5712827;codons=18;gbkey=tRNA;product=tRNA-Leu
NC_009952.1	RefSeq	gene	1916867	1917976	.	+	.	ID=gene1866;Name=Dshi_1836;Dbxref=GeneID:5712828;gbkey=Gene;locus_tag=Dshi_1836
NC_009952.1	RefSeq	CDS	1916867	1917976	.	+	0	ID=cds1830;Name=YP_001533179.1;Parent=gene1866;Note=PROSITE: PS50817;Dbxref=Genbank:YP_001533179.1,GeneID:5712828;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533179.1;transl_table=11
NC_009952.1	RefSeq	gene	1917978	1919549	.	-	.	ID=gene1867;Name=Dshi_1837;Dbxref=GeneID:5712829;gbkey=Gene;locus_tag=Dshi_1837
NC_009952.1	RefSeq	CDS	1917978	1919549	.	-	0	ID=cds1831;Name=YP_001533180.1;Parent=gene1867;Note=SWISSPROT P31806: Uncharacterized protein yjeF%3B TIGRFAM: TIGR00197%2C TIGR00196%3B PFAM: PF03853%2C PF01256%3B COG: COG0063 - Predicted sugar kinase;Dbxref=Genbank:YP_001533180.1,GeneID:5712829;gbkey=CDS;product=yjeF-like protein;protein_id=YP_001533180.1;transl_table=11
NC_009952.1	RefSeq	gene	1919720	1920058	.	+	.	ID=gene1868;Name=Dshi_1838;Dbxref=GeneID:5712830;gbkey=Gene;locus_tag=Dshi_1838
NC_009952.1	RefSeq	CDS	1919720	1920058	.	+	0	ID=cds1832;Name=YP_001533181.1;Parent=gene1868;Note=SWISSPROT P0A9Z1: Nitrogen regulation protein PII-1 %28glnB%29%3B PROSITE: PS00496%3B PFAM: PF00543;Dbxref=Genbank:YP_001533181.1,GeneID:5712830;gbkey=CDS;product=putative nitrogen regulation protein PII;protein_id=YP_001533181.1;transl_table=11
NC_009952.1	RefSeq	gene	1920126	1921532	.	+	.	ID=gene1869;Name=glnA;Dbxref=GeneID:5712831;gbkey=Gene;gene=glnA;locus_tag=Dshi_1839
NC_009952.1	RefSeq	CDS	1920126	1921532	.	+	0	ID=cds1833;Name=YP_001533182.1;Parent=gene1869;Note=SWISSPROT P0A9C5: Glutamine synthetase%3B TIGRFAM: TIGR00653 glutamine synthetase%2C type I%3B COG: COG0174;Dbxref=Genbank:YP_001533182.1,GeneID:5712831;gbkey=CDS;gene=glnA;product=glutamine synthetase;protein_id=YP_001533182.1;transl_table=11
NC_009952.1	RefSeq	gene	1921699	1922916	.	+	.	ID=gene1870;Name=Dshi_1840;Dbxref=GeneID:5712832;gbkey=Gene;locus_tag=Dshi_1840
NC_009952.1	RefSeq	CDS	1921699	1922916	.	+	0	ID=cds1834;Name=YP_001533183.1;Parent=gene1870;Note=COG: COG1765-Predicted redox protein%2C regulator or disulfide bond formation. PFAM: pfam02566%3B SUPERFAMILY: SSF82784%3B Gene3D: G3DSA:3.30.300.20. No sequence similiarity to protein OsmC from E.coli could be detected with Swiss-Prot BLAST.;Dbxref=Genbank:YP_001533183.1,GeneID:5712832;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533183.1;transl_table=11
NC_009952.1	RefSeq	gene	1923108	1923518	.	-	.	ID=gene1871;Name=Dshi_1841;Dbxref=GeneID:5712833;gbkey=Gene;locus_tag=Dshi_1841
NC_009952.1	RefSeq	CDS	1923108	1923518	.	-	0	ID=cds1835;Name=YP_001533184.1;Parent=gene1871;Dbxref=Genbank:YP_001533184.1,GeneID:5712833;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533184.1;transl_table=11
NC_009952.1	RefSeq	gene	1923555	1924907	.	+	.	ID=gene1872;Name=purB;Dbxref=GeneID:5712834;gbkey=Gene;gene=purB;locus_tag=Dshi_1842
NC_009952.1	RefSeq	CDS	1923555	1924907	.	+	0	ID=cds1836;Name=YP_001533185.1;Parent=gene1872;Note=Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide;Dbxref=Genbank:YP_001533185.1,GeneID:5712834;gbkey=CDS;gene=purB;product=adenylosuccinate lyase;protein_id=YP_001533185.1;transl_table=11
NC_009952.1	RefSeq	gene	1925007	1925174	.	+	.	ID=gene1873;Name=Dshi_1843;Dbxref=GeneID:5712835;gbkey=Gene;locus_tag=Dshi_1843
NC_009952.1	RefSeq	CDS	1925007	1925174	.	+	0	ID=cds1837;Name=YP_001533186.1;Parent=gene1873;Dbxref=Genbank:YP_001533186.1,GeneID:5712835;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533186.1;transl_table=11
NC_009952.1	RefSeq	gene	1925279	1925812	.	+	.	ID=gene1874;Name=Dshi_1844;Dbxref=GeneID:5712836;gbkey=Gene;locus_tag=Dshi_1844
NC_009952.1	RefSeq	CDS	1925279	1925812	.	+	0	ID=cds1838;Name=YP_001533187.1;Parent=gene1874;Note=PFAM: pfam00515%3B PROSITE: PS50005%2C PS50293%3B related to tetratricopeptide-like;Dbxref=Genbank:YP_001533187.1,GeneID:5712836;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533187.1;transl_table=11
NC_009952.1	RefSeq	gene	1925869	1926918	.	+	.	ID=gene1875;Name=Dshi_1845;Dbxref=GeneID:5712837;gbkey=Gene;locus_tag=Dshi_1845
NC_009952.1	RefSeq	CDS	1925869	1926918	.	+	0	ID=cds1839;Name=YP_001533188.1;Parent=gene1875;Note=SWISSPROT P0ABZ1: Flagellar motor switch protein fliG%3B COG: COG1536 - Flagellar motor switch protein%3B PFAM: PF01706%3B PRINTS: PR00954;Dbxref=Genbank:YP_001533188.1,GeneID:5712837;gbkey=CDS;product=putative flagellar motor switch protein fliG;protein_id=YP_001533188.1;transl_table=11
NC_009952.1	RefSeq	gene	1927300	1927743	.	+	.	ID=gene1876;Name=Dshi_1846;Dbxref=GeneID:5712838;gbkey=Gene;locus_tag=Dshi_1846
NC_009952.1	RefSeq	CDS	1927300	1927743	.	+	0	ID=cds1840;Name=YP_001533189.1;Parent=gene1876;Note=SUPERFAMILY: SSF75169;Dbxref=Genbank:YP_001533189.1,GeneID:5712838;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533189.1;transl_table=11
NC_009952.1	RefSeq	gene	1927842	1928210	.	+	.	ID=gene1877;Name=Dshi_1847;Dbxref=GeneID:5712839;gbkey=Gene;locus_tag=Dshi_1847
NC_009952.1	RefSeq	CDS	1927842	1928210	.	+	0	ID=cds1841;Name=YP_001533190.1;Parent=gene1877;Note=PFAM: PF02211%3B SUPERFAMILY: SSF50090%3B similar to nitrile hydratase subunit beta;Dbxref=Genbank:YP_001533190.1,GeneID:5712839;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533190.1;transl_table=11
NC_009952.1	RefSeq	gene	1928185	1928493	.	+	.	ID=gene1878;Name=Dshi_1848;Dbxref=GeneID:5712840;gbkey=Gene;locus_tag=Dshi_1848
NC_009952.1	RefSeq	CDS	1928185	1928493	.	+	0	ID=cds1842;Name=YP_001533191.1;Parent=gene1878;Note=PFAM: PF02211%3B SUPERFAMILY: SSF50090%3B similar to nitrile hydratase subunit beta;Dbxref=Genbank:YP_001533191.1,GeneID:5712840;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533191.1;transl_table=11
NC_009952.1	RefSeq	gene	1928483	1929094	.	+	.	ID=gene1879;Name=nthA;Dbxref=GeneID:5712841;gbkey=Gene;gene=nthA;locus_tag=Dshi_1849
NC_009952.1	RefSeq	CDS	1928483	1929094	.	+	0	ID=cds1843;Name=YP_001533192.1;Parent=gene1879;Note=SWISSPROT Q7SID2: Cobalt-containing nitrile hydratase subunit alpha%2C P97051: Nitrile hydratase subunit alpha%3B PFAM: PF02979%3B PIR: PIRSF001426;Dbxref=Genbank:YP_001533192.1,GeneID:5712841;gbkey=CDS;gene=nthA;product=nitrile hydratse subunit alpha;protein_id=YP_001533192.1;transl_table=11
NC_009952.1	RefSeq	gene	1929104	1929808	.	-	.	ID=gene1880;Name=Dshi_1850;Dbxref=GeneID:5712842;gbkey=Gene;locus_tag=Dshi_1850
NC_009952.1	RefSeq	CDS	1929104	1929808	.	-	0	ID=cds1844;Name=YP_001533193.1;Parent=gene1880;Note=PFAM PF06764: Protein of unknown function DUF1223;Dbxref=Genbank:YP_001533193.1,GeneID:5712842;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533193.1;transl_table=11
NC_009952.1	RefSeq	gene	1930031	1932817	.	+	.	ID=gene1881;Name=acnA;Dbxref=GeneID:5712843;gbkey=Gene;gene=acnA;locus_tag=Dshi_1851
NC_009952.1	RefSeq	CDS	1930031	1932817	.	+	0	ID=cds1845;Name=YP_001533194.1;Parent=gene1881;Note=Catalyzes the conversion of citrate to isocitrate;Dbxref=Genbank:YP_001533194.1,GeneID:5712843;gbkey=CDS;gene=acnA;product=aconitate hydratase;protein_id=YP_001533194.1;transl_table=11
NC_009952.1	RefSeq	gene	1932907	1933446	.	-	.	ID=gene1882;Name=Dshi_1852;Dbxref=GeneID:5712844;gbkey=Gene;locus_tag=Dshi_1852
NC_009952.1	RefSeq	CDS	1932907	1933446	.	-	0	ID=cds1846;Name=YP_001533195.1;Parent=gene1882;Note=SWISSPROT P0AA86: Thiol:disulfide interchange protein dsbE%3B TIGRFAM: TIGR00385 periplasmic protein thiol:disulfide oxidoreductases%2C DsbE subfamily%3B COG: COG0526 - Thiol-disulfide isomerase and thioredoxins%3B PFAM: PF08534%3B PRINTS: PR00421;Dbxref=Genbank:YP_001533195.1,GeneID:5712844;gbkey=CDS;product=putative thioredoxin;protein_id=YP_001533195.1;transl_table=11
NC_009952.1	RefSeq	gene	1933597	1934328	.	-	.	ID=gene1883;Name=ccmC;Dbxref=GeneID:5712845;gbkey=Gene;gene=ccmC;locus_tag=Dshi_1853
NC_009952.1	RefSeq	CDS	1933597	1934328	.	-	0	ID=cds1847;Name=YP_001533196.1;Parent=gene1883;Note=SWISSPROT P0ABM1: Heme exporter protein C%3B TIGRFAM: TIGR01191 heme exporter protein CcmC%3B COG: COG0755 - ABC-type transport system involved in cytochrome c biogenesis%2C permease component%3B PFAM: PF01578%3B PRINTS: PR01386;Dbxref=Genbank:YP_001533196.1,GeneID:5712845;gbkey=CDS;gene=ccmC;product=heme exporter protein C;protein_id=YP_001533196.1;transl_table=11
NC_009952.1	RefSeq	gene	1934384	1935040	.	-	.	ID=gene1884;Name=ccmB;Dbxref=GeneID:5712846;gbkey=Gene;gene=ccmB;locus_tag=Dshi_1854
NC_009952.1	RefSeq	CDS	1934384	1935040	.	-	0	ID=cds1848;Name=YP_001533197.1;Parent=gene1884;Note=PFAM: PF03379-CcmB protein%3B TIGRFAM: TIGR01190 heme exporter protein CcmB%3B COG: COG2386 - ABC-type transport system involved in cytochrome c biogenesis%2C permease component%3B PRINTS: PR01414;Dbxref=Genbank:YP_001533197.1,GeneID:5712846;gbkey=CDS;gene=ccmB;product=heme exporter protein B;protein_id=YP_001533197.1;transl_table=11
NC_009952.1	RefSeq	gene	1935037	1935654	.	-	.	ID=gene1885;Name=ccmA;Dbxref=GeneID:5712847;gbkey=Gene;gene=ccmA;locus_tag=Dshi_1855
NC_009952.1	RefSeq	CDS	1935037	1935654	.	-	0	ID=cds1849;Name=YP_001533198.1;Parent=gene1885;Note=ATP-binding protein%3B required for proper cytochrome c maturation;Dbxref=Genbank:YP_001533198.1,GeneID:5712847;gbkey=CDS;gene=ccmA;product=cytochrome c biogenesis protein CcmA;protein_id=YP_001533198.1;transl_table=11
NC_009952.1	RefSeq	gene	1935699	1936058	.	-	.	ID=gene1886;Name=Dshi_1856;Dbxref=GeneID:5712848;gbkey=Gene;locus_tag=Dshi_1856
NC_009952.1	RefSeq	CDS	1935699	1936058	.	-	0	ID=cds1850;Name=YP_001533199.1;Parent=gene1886;Note=PFAM: Protein of unknown function %28DUF498%2FDUF598%29%3B COG: COG3737;Dbxref=Genbank:YP_001533199.1,GeneID:5712848;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533199.1;transl_table=11
NC_009952.1	RefSeq	gene	1936069	1936821	.	-	.	ID=gene1887;Name=Dshi_1857;Dbxref=GeneID:5712849;gbkey=Gene;locus_tag=Dshi_1857
NC_009952.1	RefSeq	CDS	1936069	1936821	.	-	0	ID=cds1851;Name=YP_001533200.1;Parent=gene1887;Note=PFAM: PF01925%3B PROSITE: PS00318%3B related to DUF81;Dbxref=Genbank:YP_001533200.1,GeneID:5712849;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533200.1;transl_table=11
NC_009952.1	RefSeq	gene	1936814	1937776	.	-	.	ID=gene1888;Name=secF;Dbxref=GeneID:5712850;gbkey=Gene;gene=secF;locus_tag=Dshi_1858
NC_009952.1	RefSeq	CDS	1936814	1937776	.	-	0	ID=cds1852;Name=YP_001533201.1;Parent=gene1888;Note=forms a complex with SecD and YajC%3B SecDFyajC stimulates the proton motive force-driven protein translocation%3B seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane%3B in some organisms%2C such as Bacillus subtilis%2C SecD is fused to SecF;Dbxref=Genbank:YP_001533201.1,GeneID:5712850;gbkey=CDS;gene=secF;product=preprotein translocase subunit SecF;protein_id=YP_001533201.1;transl_table=11
NC_009952.1	RefSeq	gene	1937778	1939442	.	-	.	ID=gene1889;Name=secD;Dbxref=GeneID:5712851;gbkey=Gene;gene=secD;locus_tag=Dshi_1859
NC_009952.1	RefSeq	CDS	1937778	1939442	.	-	0	ID=cds1853;Name=YP_001533202.1;Parent=gene1889;Note=part of the preprotein secretory system%3B when complexed with proteins SecF and YajC%2C SecDFyajC stimulates the proton motive force-driven protein translocation%2C and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane;Dbxref=Genbank:YP_001533202.1,GeneID:5712851;gbkey=CDS;gene=secD;product=preprotein translocase subunit SecD;protein_id=YP_001533202.1;transl_table=11
NC_009952.1	RefSeq	gene	1939449	1939766	.	-	.	ID=gene1890;Name=yajC;Dbxref=GeneID:5712852;gbkey=Gene;gene=yajC;locus_tag=Dshi_1860
NC_009952.1	RefSeq	CDS	1939449	1939766	.	-	0	ID=cds1854;Name=YP_001533203.1;Parent=gene1890;Note=SV%3B Pfam: preprotein translocase subunit%2C ProDom: YajC preprotein translocase subunit%2C TIGRFAM: YajC;Dbxref=Genbank:YP_001533203.1,GeneID:5712852;gbkey=CDS;gene=yajC;product=preprotein translocase subunit;protein_id=YP_001533203.1;transl_table=11
NC_009952.1	RefSeq	gene	1940020	1940709	.	+	.	ID=gene1891;Name=Dshi_1861;Dbxref=GeneID:5712853;gbkey=Gene;locus_tag=Dshi_1861
NC_009952.1	RefSeq	CDS	1940020	1940709	.	+	0	ID=cds1855;Name=YP_001533204.1;Parent=gene1891;Dbxref=Genbank:YP_001533204.1,GeneID:5712853;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533204.1;transl_table=11
NC_009952.1	RefSeq	gene	1940803	1941114	.	+	.	ID=gene1892;Name=Dshi_1862;Dbxref=GeneID:5712854;gbkey=Gene;locus_tag=Dshi_1862
NC_009952.1	RefSeq	CDS	1940803	1941114	.	+	0	ID=cds1856;Name=YP_001533205.1;Parent=gene1892;Note=PFAM: PF00805%3B COG: COG1357 - Uncharacterized low-complexity proteins;Dbxref=Genbank:YP_001533205.1,GeneID:5712854;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533205.1;transl_table=11
NC_009952.1	RefSeq	gene	1941457	1942752	.	+	.	ID=gene1893;Name=serS;Dbxref=GeneID:5712855;gbkey=Gene;gene=serS;locus_tag=Dshi_1863
NC_009952.1	RefSeq	CDS	1941457	1942752	.	+	0	ID=cds1857;Name=YP_001533206.1;Parent=gene1893;Note=catalyzes a two-step reaction%2C first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA;Dbxref=Genbank:YP_001533206.1,GeneID:5712855;gbkey=CDS;gene=serS;product=seryl-tRNA synthetase;protein_id=YP_001533206.1;transl_table=11
NC_009952.1	RefSeq	gene	1942814	1943926	.	+	.	ID=gene1894;Name=Dshi_1864;Dbxref=GeneID:5712856;gbkey=Gene;locus_tag=Dshi_1864
NC_009952.1	RefSeq	CDS	1942814	1943926	.	+	0	ID=cds1858;Name=YP_001533207.1;Parent=gene1894;Note=TIGRFAM: TIGR02283 lytic murein transglycosylase%3B COG: COG2951 - Membrane-bound lytic murein transglycosylase B%3B PFAM: PF01471%3B Gene3D: G3DSA:1.10.101.10;Dbxref=Genbank:YP_001533207.1,GeneID:5712856;gbkey=CDS;product=putative membrane-bound lytic murein transglycosylase;protein_id=YP_001533207.1;transl_table=11
NC_009952.1	RefSeq	gene	1944045	1944914	.	-	.	ID=gene1895;Name=Dshi_1865;Dbxref=GeneID:5712857;gbkey=Gene;locus_tag=Dshi_1865
NC_009952.1	RefSeq	CDS	1944045	1944914	.	-	0	ID=cds1859;Name=YP_001533208.1;Parent=gene1895;Dbxref=Genbank:YP_001533208.1,GeneID:5712857;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533208.1;transl_table=11
NC_009952.1	RefSeq	gene	1945208	1946029	.	-	.	ID=gene1896;Name=Dshi_1866;Dbxref=GeneID:5712858;gbkey=Gene;locus_tag=Dshi_1866
NC_009952.1	RefSeq	CDS	1945208	1946029	.	-	0	ID=cds1860;Name=YP_001533209.1;Parent=gene1896;Note=COG: COG5473 - Predicted integral membrane protein;Dbxref=Genbank:YP_001533209.1,GeneID:5712858;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533209.1;transl_table=11
NC_009952.1	RefSeq	gene	1946164	1947480	.	-	.	ID=gene1897;Name=glnT;Dbxref=GeneID:5712859;gbkey=Gene;gene=glnT;locus_tag=Dshi_1867
NC_009952.1	RefSeq	CDS	1946164	1947480	.	-	0	ID=cds1861;Name=YP_001533210.1;Parent=gene1897;Note=SWISSPROT P31592: Glutamine synthetase 3%3B COG: COG0174 - Glutamine synthetase%3B PFAM: PF00120%3B PROSITE: PS00181%3B SUPERFAMILY: SSF54368;Dbxref=Genbank:YP_001533210.1,GeneID:5712859;gbkey=CDS;gene=glnT;product=glutamine synthetase;protein_id=YP_001533210.1;transl_table=11
NC_009952.1	RefSeq	gene	1947542	1948876	.	-	.	ID=gene1898;Name=Dshi_1868;Dbxref=GeneID:5712860;gbkey=Gene;locus_tag=Dshi_1868
NC_009952.1	RefSeq	CDS	1947542	1948876	.	-	0	ID=cds1862;Name=YP_001533211.1;Parent=gene1898;Note=SWISSPROT O87392: Glutamate synthase large subunit-like protein %28glxD%29%3B PFAM: PF01645%3B COG: COG0069 - Glutamate synthase domain 2;Dbxref=Genbank:YP_001533211.1,GeneID:5712860;gbkey=CDS;product=putative glutamate synthase large subunit-like protein;protein_id=YP_001533211.1;transl_table=11
NC_009952.1	RefSeq	gene	1948897	1949574	.	-	.	ID=gene1899;Name=Dshi_1869;Dbxref=GeneID:5712861;gbkey=Gene;locus_tag=Dshi_1869
NC_009952.1	RefSeq	CDS	1948897	1949574	.	-	0	ID=cds1863;Name=YP_001533212.1;Parent=gene1899;Note=PFAM: PF01493%3B PIR: PIRSF006519%3B SWISSPROT O87391: Protein glxC%3B COG: COG0070 - Glutamate synthase domain 3%3B fwdC%2FfmdC family protein;Dbxref=Genbank:YP_001533212.1,GeneID:5712861;gbkey=CDS;product=putative glutamate synthase;protein_id=YP_001533212.1;transl_table=11
NC_009952.1	RefSeq	gene	1949574	1950500	.	-	.	ID=gene1900;Name=Dshi_1870;Dbxref=GeneID:5712862;gbkey=Gene;locus_tag=Dshi_1870
NC_009952.1	RefSeq	CDS	1949574	1950500	.	-	0	ID=cds1864;Name=YP_001533213.1;Parent=gene1900;Note=PFAM: PF00310%3B PROSITE: PS01039%3B SWISSPROT O87390: Glutamine amidotransferase-like protein glxB%3B COG: COG0067 - Glutamate synthase domain 1%3B class II;Dbxref=Genbank:YP_001533213.1,GeneID:5712862;gbkey=CDS;product=putative glutamine amidotransferase;protein_id=YP_001533213.1;transl_table=11
NC_009952.1	RefSeq	gene	1950576	1951223	.	-	.	ID=gene1901;Name=Dshi_1871;Dbxref=GeneID:5712863;gbkey=Gene;locus_tag=Dshi_1871
NC_009952.1	RefSeq	CDS	1950576	1951223	.	-	0	ID=cds1865;Name=YP_001533214.1;Parent=gene1901;Note=PFAM: PF01381%2C PF07883%3B PROSITE: PS50943%3B SUPERFAMILY: SSF51182%2C SSF47413%3B COG: COG1396 - Predicted transcriptional regulators;Dbxref=Genbank:YP_001533214.1,GeneID:5712863;gbkey=CDS;product=putative HTH-type transcriptional regulator;protein_id=YP_001533214.1;transl_table=11
NC_009952.1	RefSeq	gene	1951375	1952643	.	-	.	ID=gene1902;Name=Dshi_1872;Dbxref=GeneID:5712864;gbkey=Gene;locus_tag=Dshi_1872
NC_009952.1	RefSeq	CDS	1951375	1952643	.	-	0	ID=cds1866;Name=YP_001533215.1;Parent=gene1902;Note=SUPERFAMILY: SSF50952%3B Gene3D: G3DSA:2.120.10.30%3B COG: COG2133 - Glucose%2Fsorbosone dehydrogenases;Dbxref=Genbank:YP_001533215.1,GeneID:5712864;gbkey=CDS;product=putative soluble aldose sugar dehydrogenase;protein_id=YP_001533215.1;transl_table=11
NC_009952.1	RefSeq	gene	1952797	1953105	.	-	.	ID=gene1903;Name=Dshi_1873;Dbxref=GeneID:5712865;gbkey=Gene;locus_tag=Dshi_1873
NC_009952.1	RefSeq	CDS	1952797	1953105	.	-	0	ID=cds1867;Name=YP_001533216.1;Parent=gene1903;Note=SWISSPROT P00105: Cytochrome c-554%28548%29%3B PFAM: PF00034- cytochrome c%3B COG: COG2863 - Cytochrome c553;Dbxref=Genbank:YP_001533216.1,GeneID:5712865;gbkey=CDS;product=putative cytochrome c;protein_id=YP_001533216.1;transl_table=11
NC_009952.1	RefSeq	gene	1953173	1953769	.	-	.	ID=gene1904;Name=Dshi_1874;Dbxref=GeneID:5712866;gbkey=Gene;locus_tag=Dshi_1874
NC_009952.1	RefSeq	CDS	1953173	1953769	.	-	0	ID=cds1868;Name=YP_001533217.1;Parent=gene1904;Note=PFAM: PF00440%3B PROSITE: PS50977%3B SUPERFAMILY: SSF46689%2C SSF48498%3B COG: COG1309 - Transcriptional regulator%3B tetR family;Dbxref=Genbank:YP_001533217.1,GeneID:5712866;gbkey=CDS;product=putative regulatory protein;protein_id=YP_001533217.1;transl_table=11
NC_009952.1	RefSeq	gene	1953908	1954423	.	+	.	ID=gene1905;Name=Dshi_1875;Dbxref=GeneID:5712867;gbkey=Gene;locus_tag=Dshi_1875
NC_009952.1	RefSeq	CDS	1953908	1954423	.	+	0	ID=cds1869;Name=YP_001533218.1;Parent=gene1905;Note=PFAM: PF04224-Protein of unknown function%2C DUF417%3B COG: Predicted membrane protein%3B SWISSPROT P75685: Inner membrane protein ykgB%3B DUF417;Dbxref=Genbank:YP_001533218.1,GeneID:5712867;gbkey=CDS;product=putative inner membrane protein;protein_id=YP_001533218.1;transl_table=11
NC_009952.1	RefSeq	gene	1954483	1954755	.	+	.	ID=gene1906;Name=Dshi_1876;Dbxref=GeneID:5712868;gbkey=Gene;locus_tag=Dshi_1876
NC_009952.1	RefSeq	CDS	1954483	1954755	.	+	0	ID=cds1870;Name=YP_001533219.1;Parent=gene1906;Note=SWISSPROT P0AC62: Glutaredoxin-3%3B TIGRFAM: TIGR02181 Glutaredoxin%2C GrxC family%3B COG: COG0695 - Glutaredoxin and related proteins%3B PFAM: PF00462-Glutaredoxin%3B grxC;Dbxref=Genbank:YP_001533219.1,GeneID:5712868;gbkey=CDS;product=putative glutaredoxin 3;protein_id=YP_001533219.1;transl_table=11
NC_009952.1	RefSeq	gene	1954772	1956046	.	-	.	ID=gene1907;Name=Dshi_1877;Dbxref=GeneID:5712869;gbkey=Gene;locus_tag=Dshi_1877
NC_009952.1	RefSeq	CDS	1954772	1956046	.	-	0	ID=cds1871;Name=YP_001533220.1;Parent=gene1907;Note=COG: COG4325 - Predicted membrane protein;Dbxref=Genbank:YP_001533220.1,GeneID:5712869;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533220.1;transl_table=11
NC_009952.1	RefSeq	gene	1956140	1957117	.	-	.	ID=gene1908;Name=Dshi_1878;Dbxref=GeneID:5712870;gbkey=Gene;locus_tag=Dshi_1878
NC_009952.1	RefSeq	CDS	1956140	1957117	.	-	0	ID=cds1872;Name=YP_001533221.1;Parent=gene1908;Note=SUPERFAMILY: SSF56784;Dbxref=Genbank:YP_001533221.1,GeneID:5712870;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533221.1;transl_table=11
NC_009952.1	RefSeq	gene	1957234	1958421	.	-	.	ID=gene1909;Name=Dshi_1879;Dbxref=GeneID:5712871;gbkey=Gene;locus_tag=Dshi_1879
NC_009952.1	RefSeq	CDS	1957234	1958421	.	-	0	ID=cds1873;Name=YP_001533222.1;Parent=gene1909;Note=COG: COG3825 - Uncharacterized protein conserved in bacteria;Dbxref=Genbank:YP_001533222.1,GeneID:5712871;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533222.1;transl_table=11
NC_009952.1	RefSeq	gene	1958425	1958592	.	-	.	ID=gene1910;Name=Dshi_1880;Dbxref=GeneID:5712872;gbkey=Gene;locus_tag=Dshi_1880
NC_009952.1	RefSeq	CDS	1958425	1958592	.	-	0	ID=cds1874;Name=YP_001533223.1;Parent=gene1910;Dbxref=Genbank:YP_001533223.1,GeneID:5712872;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533223.1;transl_table=11
NC_009952.1	RefSeq	gene	1958592	1959968	.	-	.	ID=gene1911;Name=Dshi_1881;Dbxref=GeneID:5712873;gbkey=Gene;locus_tag=Dshi_1881
NC_009952.1	RefSeq	CDS	1958592	1959968	.	-	0	ID=cds1875;Name=YP_001533224.1;Parent=gene1911;Note=PROSITE: PS00214%2C PS51257;Dbxref=Genbank:YP_001533224.1,GeneID:5712873;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533224.1;transl_table=11
NC_009952.1	RefSeq	gene	1959965	1960423	.	-	.	ID=gene1912;Name=Dshi_1882;Dbxref=GeneID:5712874;gbkey=Gene;locus_tag=Dshi_1882
NC_009952.1	RefSeq	CDS	1959965	1960423	.	-	0	ID=cds1876;Name=YP_001533225.1;Parent=gene1912;Note=PFAM: PF00583%3B PROSITE: PS51186%3B SUPERFAMILY: SSF55729;Dbxref=Genbank:YP_001533225.1,GeneID:5712874;gbkey=CDS;product=putative acetyltransferase;protein_id=YP_001533225.1;transl_table=11
NC_009952.1	RefSeq	gene	1960643	1961485	.	-	.	ID=gene1913;Name=Dshi_1883;Dbxref=GeneID:5712875;gbkey=Gene;locus_tag=Dshi_1883
NC_009952.1	RefSeq	CDS	1960643	1961485	.	-	0	ID=cds1877;Name=YP_001533226.1;Parent=gene1913;Note=COG: COG0714 - MoxR-like ATPases%3B PFAM: PF00004%3B SMART: SM00382 %3B PRITNTS: PR00300;Dbxref=Genbank:YP_001533226.1,GeneID:5712875;gbkey=CDS;product=putative clpA%2FclpB family protein;protein_id=YP_001533226.1;transl_table=11
NC_009952.1	RefSeq	gene	1961615	1962088	.	+	.	ID=gene1914;Name=Dshi_1884;Dbxref=GeneID:5712876;gbkey=Gene;locus_tag=Dshi_1884
NC_009952.1	RefSeq	CDS	1961615	1962088	.	+	0	ID=cds1878;Name=YP_001533227.1;Parent=gene1914;Note=TIGRFAM: TIGR02420 RNA polymerase-binding protein DksA%3B COG: COG1734 - DnaK suppressor protein%3B SWISSPROT P0ABS1: DnaK suppressor protein %28dksA%29%3B PFAM: PF01258%3B PROSITE: PS01102;Dbxref=Genbank:YP_001533227.1,GeneID:5712876;gbkey=CDS;product=putative DnaK suppressor protein;protein_id=YP_001533227.1;transl_table=11
NC_009952.1	RefSeq	gene	1962221	1963390	.	+	.	ID=gene1915;Name=Dshi_1885;Dbxref=GeneID:5712877;gbkey=Gene;locus_tag=Dshi_1885
NC_009952.1	RefSeq	CDS	1962221	1963390	.	+	0	ID=cds1879;Name=YP_001533228.1;Parent=gene1915;Note=COG: COG0654 - 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases%3B PFAM: PF01266%3B PRINTS: PR00420;Dbxref=Genbank:YP_001533228.1,GeneID:5712877;gbkey=CDS;product=putative salicylate hydroxylase;protein_id=YP_001533228.1;transl_table=11
NC_009952.1	RefSeq	gene	1963398	1964177	.	-	.	ID=gene1916;Name=Dshi_1886;Dbxref=GeneID:5712878;gbkey=Gene;locus_tag=Dshi_1886
NC_009952.1	RefSeq	CDS	1963398	1964177	.	-	0	ID=cds1880;Name=YP_001533229.1;Parent=gene1916;Note=TIGRFAM: TIGR00195 exodeoxyribonuclease III%2C TIGR00633 exodeoxyribonuclease III %28xth%29%3B COG: COG0708 - Exonuclease III%3B PFAM: PF03372-Endonuclease%2FExonuclease%2Fphosphatase family%3B PROSITE: PS00726%3B xthA;Dbxref=Genbank:YP_001533229.1,GeneID:5712878;gbkey=CDS;product=putative Exodeoxyribonuclease III;protein_id=YP_001533229.1;transl_table=11
NC_009952.1	RefSeq	gene	1964382	1965539	.	-	.	ID=gene1917;Name=Dshi_1887;Dbxref=GeneID:5712879;gbkey=Gene;locus_tag=Dshi_1887
NC_009952.1	RefSeq	CDS	1964382	1965539	.	-	0	ID=cds1881;Name=YP_001533230.1;Parent=gene1917;Note=TIGRFAM: TIGR01388%3B COG: COG0349%3B PFAM: PF01612%3B SMART: SM00474%3B PROSITE: PS50967%3B SUPERFAMILY: SSF53098%3B rnd;Dbxref=Genbank:YP_001533230.1,GeneID:5712879;gbkey=CDS;product=putative ribonuclease D;protein_id=YP_001533230.1;transl_table=11
NC_009952.1	RefSeq	gene	1965637	1966230	.	-	.	ID=gene1918;Name=purN;Dbxref=GeneID:5712880;gbkey=Gene;gene=purN;locus_tag=Dshi_1888
NC_009952.1	RefSeq	CDS	1965637	1966230	.	-	0	ID=cds1882;Name=YP_001533231.1;Parent=gene1918;Note=TIGRFAM: TIGR00639 phosphoribosylglycinamide formyltransferase%2C formyltetrahydrofolate-dependent%3B COG: COG0299 - Folate-dependent phosphoribosylglycinamide formyltransferase PurN%3B PFAM PF00551: Formyl transferase;Dbxref=Genbank:YP_001533231.1,GeneID:5712880;gbkey=CDS;gene=purN;product=phosphoribosylglycinamide formyltransferase;protein_id=YP_001533231.1;transl_table=11
NC_009952.1	RefSeq	gene	1966227	1967288	.	-	.	ID=gene1919;Name=purM;Dbxref=GeneID:5712881;gbkey=Gene;gene=purM;locus_tag=Dshi_1889
NC_009952.1	RefSeq	CDS	1966227	1967288	.	-	0	ID=cds1883;Name=YP_001533232.1;Parent=gene1919;Note=catalyzes the formation of 1-%285-phosphoribosyl%29-5-aminoimidazole from 2-%28formamido%29-N1-%285-phosphoribosyl%29acetamidine and ATP in purine biosynthesis;Dbxref=Genbank:YP_001533232.1,GeneID:5712881;gbkey=CDS;gene=purM;product=phosphoribosylaminoimidazole synthetase;protein_id=YP_001533232.1;transl_table=11
NC_009952.1	RefSeq	gene	1967401	1967477	.	+	.	ID=gene1920;Name=Dshi_6037;Dbxref=GeneID:5712882;gbkey=Gene;locus_tag=Dshi_6037
NC_009952.1	RefSeq	tRNA	1967401	1967477	.	+	.	ID=rna36;Parent=gene1920;Dbxref=GeneID:5712882;codons=35;gbkey=tRNA;product=tRNA-Met
NC_009952.1	RefSeq	exon	1967401	1967477	.	+	.	ID=id40;Parent=rna36;Dbxref=GeneID:5712882;codons=35;gbkey=tRNA;product=tRNA-Met
NC_009952.1	RefSeq	gene	1967456	1968577	.	-	.	ID=gene1921;Name=Dshi_1890;Dbxref=GeneID:5712883;gbkey=Gene;locus_tag=Dshi_1890
NC_009952.1	RefSeq	CDS	1967456	1968577	.	-	0	ID=cds1884;Name=YP_001533233.1;Parent=gene1921;Note=PFAM: PF08238%3B SMART: SM00671%3B SUPERFAMILY: SSF81901;Dbxref=Genbank:YP_001533233.1,GeneID:5712883;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533233.1;transl_table=11
NC_009952.1	RefSeq	gene	1968779	1969207	.	+	.	ID=gene1922;Name=Dshi_1891;Dbxref=GeneID:5712884;gbkey=Gene;locus_tag=Dshi_1891
NC_009952.1	RefSeq	CDS	1968779	1969207	.	+	0	ID=cds1885;Name=YP_001533234.1;Parent=gene1922;Note=COG: COG1017 - Hemoglobin-like flavoprotein%3B PFAM: PF00042-Globin%3B SUPERFAMILY: Globin-like SSF46458%3B Gene3D: G3DSA:1.10.490.10%3B SWISSPROT P04252: Bacterial hemoglobin;Dbxref=Genbank:YP_001533234.1,GeneID:5712884;gbkey=CDS;product=putative flavohemoglobin;protein_id=YP_001533234.1;transl_table=11
NC_009952.1	RefSeq	gene	1969284	1970432	.	+	.	ID=gene1923;Name=Dshi_1892;Dbxref=GeneID:5712885;gbkey=Gene;locus_tag=Dshi_1892
NC_009952.1	RefSeq	CDS	1969284	1970432	.	+	0	ID=cds1886;Name=YP_001533235.1;Parent=gene1923;Note=COG: COG3287 - Uncharacterized conserved protein%3B PFAM: PF08495;Dbxref=Genbank:YP_001533235.1,GeneID:5712885;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533235.1;transl_table=11
NC_009952.1	RefSeq	gene	1970454	1973216	.	+	.	ID=gene1924;Name=Dshi_1893;Dbxref=GeneID:5712886;gbkey=Gene;locus_tag=Dshi_1893
NC_009952.1	RefSeq	CDS	1970454	1973216	.	+	0	ID=cds1887;Name=YP_001533236.1;Parent=gene1924;Note=similar to to known LOV domains %28e.g SB1 and SB2 from Pseudomonas putida%29%3B highly conserved LOV consensus region including the photoactive Cys. TIGRFAM: TIGR00229 PAS domain S-box%3B COG: COG0642 - Signal transduction histidine kinase%3B SMART: SM00091: PAS domain%3B SM00086: PAC motif%2C SM00388: Histidine kinase-like ATPases%2C SM00448 : cheY-homologous receiver domain%3B PROSITE: PS50112: PAS repeat profile%2C PS50113: PAC domain profile%2C PS50110: Response regulatory domain profile%2C PS50109: Histidine kinase domain profile%3B PFAM: PF00072: Response regulator receiver domain%2C PF02518: Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase%2C PF00512: His Kinase A %28phosphoacceptor%29 domain%2C PF08447: PAS fold;Dbxref=Genbank:YP_001533236.1,GeneID:5712886;gbkey=CDS;product=LOV-regulator%2C Blue-light sensing;protein_id=YP_001533236.1;transl_table=11
NC_009952.1	RefSeq	gene	1973228	1973842	.	+	.	ID=gene1925;Name=Dshi_1894;Dbxref=GeneID:5712887;gbkey=Gene;locus_tag=Dshi_1894
NC_009952.1	RefSeq	CDS	1973228	1973842	.	+	0	ID=cds1888;Name=YP_001533237.1;Parent=gene1925;Note=COG: COG2197 - Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain%3B PFAM: PF00196%2C PF00072%3B PROSITE: PS50043%2C PS50110%3B SMART: SM00448 %3B SUPERFAMILY: SSF52172;Dbxref=Genbank:YP_001533237.1,GeneID:5712887;gbkey=CDS;product=putative response regulator receiver protein;protein_id=YP_001533237.1;transl_table=11
NC_009952.1	RefSeq	gene	1973861	1976413	.	-	.	ID=gene1926;Name=Dshi_1895;Dbxref=GeneID:5712888;gbkey=Gene;locus_tag=Dshi_1895
NC_009952.1	RefSeq	CDS	1973861	1976413	.	-	0	ID=cds1889;Name=YP_001533238.1;Parent=gene1926;Note=PFAM: PF00353;Dbxref=Genbank:YP_001533238.1,GeneID:5712888;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533238.1;transl_table=11
NC_009952.1	RefSeq	gene	1976442	1977851	.	-	.	ID=gene1927;Name=algD;Dbxref=GeneID:5712889;gbkey=Gene;gene=algD;locus_tag=Dshi_1896
NC_009952.1	RefSeq	CDS	1976442	1977851	.	-	0	ID=cds1890;Name=YP_001533239.1;Parent=gene1927;Note=SWISSPROT P11759: GDP-mannose 6-dehydrogenase%3B COG: COG1004 - Predicted UDP-glucose 6-dehydrogenase%3B PROSITE: PS00059%3B PFAM: PF03721%2C PF00984%2C PF03720;Dbxref=Genbank:YP_001533239.1,GeneID:5712889;gbkey=CDS;gene=algD;product=GDP-mannose 6-dehydrogenase;protein_id=YP_001533239.1;transl_table=11
NC_009952.1	RefSeq	gene	1978068	1979498	.	-	.	ID=gene1928;Name=algA;Dbxref=GeneID:5712890;gbkey=Gene;gene=algA;locus_tag=Dshi_1897
NC_009952.1	RefSeq	CDS	1978068	1979498	.	-	0	ID=cds1891;Name=YP_001533240.1;Parent=gene1928;Note=SWISSPROT P07874: Alginate biosynthesis protein algA%3B TIGRFAM: TIGR01479 mannose-1-phosphate guanylyltransferase%2Fmannose-6-phosphate isomerase%3B COG: COG0836 - Mannose-1-phosphate guanylyltransferase%3B PFAM: PF01050%2C PF00483;Dbxref=Genbank:YP_001533240.1,GeneID:5712890;gbkey=CDS;gene=algA;product=alginate biosynthesis protein;protein_id=YP_001533240.1;transl_table=11
NC_009952.1	RefSeq	gene	1979617	1981209	.	-	.	ID=gene1929;Name=Dshi_1898;Dbxref=GeneID:5712891;gbkey=Gene;locus_tag=Dshi_1898
NC_009952.1	RefSeq	CDS	1979617	1981209	.	-	0	ID=cds1892;Name=YP_001533241.1;Parent=gene1929;Note=SWISSPROT Q52463: Glycosyltransferase alg8. Possibly a processive enzyme that polymerizes GDP-mannuronic acid. No evidence at protein level but the colocation with algA and algG indicates an involvement in alginate biosynthesis.;Dbxref=Genbank:YP_001533241.1,GeneID:5712891;gbkey=CDS;product=putative glycosyltransferase alg8;protein_id=YP_001533241.1;transl_table=11
NC_009952.1	RefSeq	gene	1981196	1982602	.	-	.	ID=gene1930;Name=Dshi_1899;Dbxref=GeneID:5712892;gbkey=Gene;locus_tag=Dshi_1899
NC_009952.1	RefSeq	CDS	1981196	1982602	.	-	0	ID=cds1893;Name=YP_001533242.1;Parent=gene1930;Note=SWISSPROT P46682: p-hydroxybenzoic acid efflux pump subunit aaeA%3B related to efflux pump protein;Dbxref=Genbank:YP_001533242.1,GeneID:5712892;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533242.1;transl_table=11
NC_009952.1	RefSeq	gene	1982818	1984188	.	+	.	ID=gene1931;Name=algC;Dbxref=GeneID:5712893;gbkey=Gene;gene=algC;locus_tag=Dshi_1900
NC_009952.1	RefSeq	CDS	1982818	1984188	.	+	0	ID=cds1894;Name=YP_001533243.1;Parent=gene1931;Note=SWISSPROT P26276: Phosphomannomutase%2Fphosphoglucomutase%3B COG: COG1109 - Phosphomannomutase%3B PFAM: PF02880%2C PF02879%2C PF02878%2C PF00408%3B PROSITE: PS00710;Dbxref=Genbank:YP_001533243.1,GeneID:5712893;gbkey=CDS;gene=algC;product=phosphomannomutase;protein_id=YP_001533243.1;transl_table=11
NC_009952.1	RefSeq	gene	1984363	1984953	.	+	.	ID=gene1932;Name=Dshi_1901;Dbxref=GeneID:5712894;gbkey=Gene;locus_tag=Dshi_1901
NC_009952.1	RefSeq	CDS	1984363	1984953	.	+	0	ID=cds1895;Name=YP_001533244.1;Parent=gene1932;Note=SWISSPROT Q887Q8: alginate biosynthesis protein algF %28precursor%29. No evidence at protein level and low similarity but the colocation with algC%2C algA and algD indicates an involvement in alginate biosynthesis.%3B similar to alginate biosynthesis protein algF;Dbxref=Genbank:YP_001533244.1,GeneID:5712894;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533244.1;transl_table=11
NC_009952.1	RefSeq	gene	1984955	1986331	.	+	.	ID=gene1933;Name=Dshi_1902;Dbxref=GeneID:5712895;gbkey=Gene;locus_tag=Dshi_1902
NC_009952.1	RefSeq	CDS	1984955	1986331	.	+	0	ID=cds1896;Name=YP_001533245.1;Parent=gene1933;Note=COG: COG1696 - Predicted membrane protein involved in D-alanine export%3B PFAM: PF03062;Dbxref=Genbank:YP_001533245.1,GeneID:5712895;gbkey=CDS;product=putative poly%28beta-D-mannuronate%29 O-acetylase;protein_id=YP_001533245.1;transl_table=11
NC_009952.1	RefSeq	gene	1986343	1987356	.	+	.	ID=gene1934;Name=Dshi_1903;Dbxref=GeneID:5712896;gbkey=Gene;locus_tag=Dshi_1903
NC_009952.1	RefSeq	CDS	1986343	1987356	.	+	0	ID=cds1897;Name=YP_001533246.1;Parent=gene1934;Note=SWISSPROT Q51393;Dbxref=Genbank:YP_001533246.1,GeneID:5712896;gbkey=CDS;product=putative alginate biosynthesis protein algJ;protein_id=YP_001533246.1;transl_table=11
NC_009952.1	RefSeq	gene	1987353	1988663	.	+	.	ID=gene1935;Name=Dshi_1904;Dbxref=GeneID:5712897;gbkey=Gene;locus_tag=Dshi_1904
NC_009952.1	RefSeq	CDS	1987353	1988663	.	+	0	ID=cds1898;Name=YP_001533247.1;Parent=gene1935;Note=SWISSPROT Q88NDO%3B similar to alginate biosynthesis protein algX;Dbxref=Genbank:YP_001533247.1,GeneID:5712897;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533247.1;transl_table=11
NC_009952.1	RefSeq	gene	1989272	1990372	.	+	.	ID=gene1936;Name=Dshi_1905;Dbxref=GeneID:5712898;gbkey=Gene;locus_tag=Dshi_1905
NC_009952.1	RefSeq	CDS	1989272	1990372	.	+	0	ID=cds1899;Name=YP_001533248.1;Parent=gene1936;Note=PFAM: PF00589%3B Gene3D: G3DSA:1.10.443.10%3B similar to prophage integrase;Dbxref=Genbank:YP_001533248.1,GeneID:5712898;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533248.1;transl_table=11
NC_009952.1	RefSeq	gene	1990560	1990841	.	+	.	ID=gene1937;Name=Dshi_1906;Dbxref=GeneID:5712899;gbkey=Gene;locus_tag=Dshi_1906
NC_009952.1	RefSeq	CDS	1990560	1990841	.	+	0	ID=cds1900;Name=YP_001533249.1;Parent=gene1937;Note=SUPERFAMILY: SSF46955%3B PFAM: PF00376;Dbxref=Genbank:YP_001533249.1,GeneID:5712899;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533249.1;transl_table=11
NC_009952.1	RefSeq	gene	1990957	1992414	.	+	.	ID=gene1938;Name=Dshi_1907;Dbxref=GeneID:5712900;gbkey=Gene;locus_tag=Dshi_1907
NC_009952.1	RefSeq	CDS	1990957	1992414	.	+	0	ID=cds1901;Name=YP_001533250.1;Parent=gene1938;Note=PROSITE: PS00039;Dbxref=Genbank:YP_001533250.1,GeneID:5712900;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533250.1;transl_table=11
NC_009952.1	RefSeq	gene	1992667	1993284	.	+	.	ID=gene1939;Name=Dshi_1908;Dbxref=GeneID:5712901;gbkey=Gene;locus_tag=Dshi_1908
NC_009952.1	RefSeq	CDS	1992667	1993284	.	+	0	ID=cds1902;Name=YP_001533251.1;Parent=gene1939;Dbxref=Genbank:YP_001533251.1,GeneID:5712901;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533251.1;transl_table=11
NC_009952.1	RefSeq	gene	1993959	1994612	.	-	.	ID=gene1940;Name=Dshi_1909;Dbxref=GeneID:5712902;gbkey=Gene;locus_tag=Dshi_1909
NC_009952.1	RefSeq	CDS	1993959	1994612	.	-	0	ID=cds1903;Name=YP_001533252.1;Parent=gene1940;Dbxref=Genbank:YP_001533252.1,GeneID:5712902;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533252.1;transl_table=11
NC_009952.1	RefSeq	gene	1995268	1995951	.	+	.	ID=gene1941;Name=Dshi_1910;Dbxref=GeneID:5712903;gbkey=Gene;locus_tag=Dshi_1910
NC_009952.1	RefSeq	CDS	1995268	1995951	.	+	0	ID=cds1904;Name=YP_001533253.1;Parent=gene1941;Dbxref=Genbank:YP_001533253.1,GeneID:5712903;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533253.1;transl_table=11
NC_009952.1	RefSeq	gene	1995938	1996333	.	+	.	ID=gene1942;Name=Dshi_1911;Dbxref=GeneID:5712904;gbkey=Gene;locus_tag=Dshi_1911
NC_009952.1	RefSeq	CDS	1995938	1996333	.	+	0	ID=cds1905;Name=YP_001533254.1;Parent=gene1942;Note=PS00527: Ribosomal protein S14 signature.%3B similar to ribosomal protein;Dbxref=Genbank:YP_001533254.1,GeneID:5712904;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533254.1;transl_table=11
NC_009952.1	RefSeq	gene	1996336	1996743	.	+	.	ID=gene1943;Name=Dshi_1912;Dbxref=GeneID:5712905;gbkey=Gene;locus_tag=Dshi_1912
NC_009952.1	RefSeq	CDS	1996336	1996743	.	+	0	ID=cds1906;Name=YP_001533255.1;Parent=gene1943;Dbxref=Genbank:YP_001533255.1,GeneID:5712905;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533255.1;transl_table=11
NC_009952.1	RefSeq	gene	1996738	1997559	.	-	.	ID=gene1944;Name=Dshi_1913;Dbxref=GeneID:5712906;gbkey=Gene;locus_tag=Dshi_1913
NC_009952.1	RefSeq	CDS	1996738	1997559	.	-	0	ID=cds1907;Name=YP_001533256.1;Parent=gene1944;Note=PFAM: PF00665%3B PROSITE: PS50994%3B SUPERFAMILY: SSF53098%3B COG: COG2801 - Transposase and inactivated derivatives;Dbxref=Genbank:YP_001533256.1,GeneID:5712906;gbkey=CDS;product=putative insertion element;protein_id=YP_001533256.1;transl_table=11
NC_009952.1	RefSeq	gene	1997583	1997849	.	-	.	ID=gene1945;Name=Dshi_1914;Dbxref=GeneID:5712907;gbkey=Gene;locus_tag=Dshi_1914
NC_009952.1	RefSeq	CDS	1997583	1997849	.	-	0	ID=cds1908;Name=YP_001533257.1;Parent=gene1945;Note=PFAM: PF01527-Transposase;Dbxref=Genbank:YP_001533257.1,GeneID:5712907;gbkey=CDS;product=putative insertion element %2F transposase;protein_id=YP_001533257.1;transl_table=11
NC_009952.1	RefSeq	gene	1998356	1999138	.	+	.	ID=gene1946;Name=Dshi_1915;Dbxref=GeneID:5712908;gbkey=Gene;locus_tag=Dshi_1915
NC_009952.1	RefSeq	CDS	1998356	1999138	.	+	0	ID=cds1909;Name=YP_001533258.1;Parent=gene1946;Dbxref=Genbank:YP_001533258.1,GeneID:5712908;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533258.1;transl_table=11
NC_009952.1	RefSeq	gene	1999123	1999854	.	+	.	ID=gene1947;Name=Dshi_1916;Dbxref=GeneID:5712909;gbkey=Gene;locus_tag=Dshi_1916
NC_009952.1	RefSeq	CDS	1999123	1999854	.	+	0	ID=cds1910;Name=YP_001533259.1;Parent=gene1947;Dbxref=Genbank:YP_001533259.1,GeneID:5712909;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533259.1;transl_table=11
NC_009952.1	RefSeq	gene	1999930	2001378	.	+	.	ID=gene1948;Name=Dshi_1917;Dbxref=GeneID:5712910;gbkey=Gene;locus_tag=Dshi_1917
NC_009952.1	RefSeq	CDS	1999930	2001378	.	+	0	ID=cds1911;Name=YP_001533260.1;Parent=gene1948;Note=PROSITE: PS00093%3B PFAM: PF01555;Dbxref=Genbank:YP_001533260.1,GeneID:5712910;gbkey=CDS;product=putative modification methylase;protein_id=YP_001533260.1;transl_table=11
NC_009952.1	RefSeq	gene	2001559	2002620	.	+	.	ID=gene1949;Name=Dshi_1918;Dbxref=GeneID:5712911;gbkey=Gene;locus_tag=Dshi_1918
NC_009952.1	RefSeq	CDS	2001559	2002620	.	+	0	ID=cds1912;Name=YP_001533261.1;Parent=gene1949;Note=PROSITE: PS00093%3B PFAM: PF01555;Dbxref=Genbank:YP_001533261.1,GeneID:5712911;gbkey=CDS;product=putative modification methylase;protein_id=YP_001533261.1;transl_table=11
NC_009952.1	RefSeq	gene	2002691	2004421	.	+	.	ID=gene1950;Name=Dshi_1919;Dbxref=GeneID:5712912;gbkey=Gene;locus_tag=Dshi_1919
NC_009952.1	RefSeq	CDS	2002691	2004421	.	+	0	ID=cds1913;Name=YP_001533262.1;Parent=gene1950;Dbxref=Genbank:YP_001533262.1,GeneID:5712912;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533262.1;transl_table=11
NC_009952.1	RefSeq	gene	2004932	2005006	.	-	.	ID=gene1951;Name=Dshi_6038;Dbxref=GeneID:5712913;gbkey=Gene;locus_tag=Dshi_6038
NC_009952.1	RefSeq	tRNA	2004932	2005006	.	-	.	ID=rna37;Parent=gene1951;Dbxref=GeneID:5712913;codons=41;gbkey=tRNA;product=tRNA-Asn
NC_009952.1	RefSeq	exon	2004932	2005006	.	-	.	ID=id41;Parent=rna37;Dbxref=GeneID:5712913;codons=41;gbkey=tRNA;product=tRNA-Asn
NC_009952.1	RefSeq	gene	2005076	2005981	.	-	.	ID=gene1952;Name=Dshi_1920;Dbxref=GeneID:5712914;gbkey=Gene;locus_tag=Dshi_1920
NC_009952.1	RefSeq	CDS	2005076	2005981	.	-	0	ID=cds1914;Name=YP_001533263.1;Parent=gene1952;Note=PFAM: PF00753;Dbxref=Genbank:YP_001533263.1,GeneID:5712914;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533263.1;transl_table=11
NC_009952.1	RefSeq	gene	2006027	2007346	.	+	.	ID=gene1953;Name=Dshi_1921;Dbxref=GeneID:5712915;gbkey=Gene;locus_tag=Dshi_1921
NC_009952.1	RefSeq	CDS	2006027	2007346	.	+	0	ID=cds1915;Name=YP_001533264.1;Parent=gene1953;Note=COG: COG0642 - Signal transduction histidine kinase%3B PFAM: PF02518%2C PF00672%2C PF00512;Dbxref=Genbank:YP_001533264.1,GeneID:5712915;gbkey=CDS;product=histidine kinase;protein_id=YP_001533264.1;transl_table=11
NC_009952.1	RefSeq	gene	2007318	2007611	.	-	.	ID=gene1954;Name=Dshi_1922;Dbxref=GeneID:5712916;gbkey=Gene;locus_tag=Dshi_1922
NC_009952.1	RefSeq	CDS	2007318	2007611	.	-	0	ID=cds1916;Name=YP_001533265.1;Parent=gene1954;Dbxref=Genbank:YP_001533265.1,GeneID:5712916;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533265.1;transl_table=11
NC_009952.1	RefSeq	gene	2007881	2009116	.	+	.	ID=gene1955;Name=Dshi_1923;Dbxref=GeneID:5712917;gbkey=Gene;locus_tag=Dshi_1923
NC_009952.1	RefSeq	CDS	2007881	2009116	.	+	0	ID=cds1917;Name=YP_001533266.1;Parent=gene1955;Dbxref=Genbank:YP_001533266.1,GeneID:5712917;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533266.1;transl_table=11
NC_009952.1	RefSeq	gene	2009151	2010203	.	+	.	ID=gene1956;Name=Dshi_1924;Dbxref=GeneID:5712918;gbkey=Gene;locus_tag=Dshi_1924
NC_009952.1	RefSeq	CDS	2009151	2010203	.	+	0	ID=cds1918;Name=YP_001533267.1;Parent=gene1956;Note=TIGRFAM: TIGR02122 TRAP transporter solute receptor%2C TAXI family%3B COG: COG2358 - TRAP-type uncharacterized transport system%2C periplasmic component%3B Gene3D: G3DSA:3.40.190.10 %3B SUPERFAMIYLY: SSF53850;Dbxref=Genbank:YP_001533267.1,GeneID:5712918;gbkey=CDS;product=putative TRAP transporter solute receptor;protein_id=YP_001533267.1;transl_table=11
NC_009952.1	RefSeq	gene	2010233	2012482	.	-	.	ID=gene1957;Name=Dshi_1925;Dbxref=GeneID:5712919;gbkey=Gene;locus_tag=Dshi_1925
NC_009952.1	RefSeq	CDS	2010233	2012482	.	-	0	ID=cds1919;Name=YP_001533268.1;Parent=gene1957;Note=COG: COG3267 - Type II secretory pathway%2C component ExeA %28predicted ATPase%29%3B SMART: SM00382%3B SUPERFAMILY: SSF52540;Dbxref=Genbank:YP_001533268.1,GeneID:5712919;gbkey=CDS;product=putative ATPase;protein_id=YP_001533268.1;transl_table=11
NC_009952.1	RefSeq	gene	2012570	2014753	.	-	.	ID=gene1958;Name=priA;Dbxref=GeneID:5712920;gbkey=Gene;gene=priA;locus_tag=Dshi_1926
NC_009952.1	RefSeq	CDS	2012570	2014753	.	-	0	ID=cds1920;Name=YP_001533269.1;Parent=gene1958;Note=binding of PriA to forked DNA starts the assembly of the primosome%2C also possesses 3%27-5%27 helicase activity;Dbxref=Genbank:YP_001533269.1,GeneID:5712920;gbkey=CDS;gene=priA;product=primosome assembly protein PriA;protein_id=YP_001533269.1;transl_table=11
NC_009952.1	RefSeq	gene	2014831	2015484	.	+	.	ID=gene1959;Name=tal;Dbxref=GeneID:5712921;gbkey=Gene;gene=tal;locus_tag=Dshi_1927
NC_009952.1	RefSeq	CDS	2014831	2015484	.	+	0	ID=cds1921;Name=YP_001533270.1;Parent=gene1959;Note=similar to novel fructose-6-phosphate aldolase from Escherichia coli%3B enzyme from Methanocaldococcus janaschii shows transaldolase activity;Dbxref=Genbank:YP_001533270.1,GeneID:5712921;gbkey=CDS;gene=tal;product=putative translaldolase;protein_id=YP_001533270.1;transl_table=11
NC_009952.1	RefSeq	gene	2015542	2016249	.	+	.	ID=gene1960;Name=Dshi_1928;Dbxref=GeneID:5712922;gbkey=Gene;locus_tag=Dshi_1928
NC_009952.1	RefSeq	CDS	2015542	2016249	.	+	0	ID=cds1922;Name=YP_001533271.1;Parent=gene1960;Note=PFAM: PF04340 - Protein of unknown function%2C DUF484;Dbxref=Genbank:YP_001533271.1,GeneID:5712922;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533271.1;transl_table=11
NC_009952.1	RefSeq	gene	2016253	2017179	.	+	.	ID=gene1961;Name=xerC;Dbxref=GeneID:5712923;gbkey=Gene;gene=xerC;locus_tag=Dshi_5002
NC_009952.1	RefSeq	CDS	2016253	2017179	.	+	0	ID=cds1923;Name=YP_003422327.1;Parent=gene1961;Dbxref=Genbank:YP_003422327.1,GeneID:5712923;gbkey=CDS;gene=xerC;product=hypothetical protein;protein_id=YP_003422327.1;transl_table=11
NC_009952.1	RefSeq	gene	2017199	2018038	.	-	.	ID=gene1962;Name=Dshi_1930;Dbxref=GeneID:5712924;gbkey=Gene;locus_tag=Dshi_1930
NC_009952.1	RefSeq	CDS	2017199	2018038	.	-	0	ID=cds1924;Name=YP_001533272.1;Parent=gene1962;Note=PFAM: PF00892%3B SUPERFAMILY: SSF103481;Dbxref=Genbank:YP_001533272.1,GeneID:5712924;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533272.1;transl_table=11
NC_009952.1	RefSeq	gene	2018101	2018352	.	-	.	ID=gene1963;Name=Dshi_1931;Dbxref=GeneID:5712925;gbkey=Gene;locus_tag=Dshi_1931
NC_009952.1	RefSeq	CDS	2018101	2018352	.	-	0	ID=cds1925;Name=YP_001533273.1;Parent=gene1963;Dbxref=Genbank:YP_001533273.1,GeneID:5712925;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533273.1;transl_table=11
NC_009952.1	RefSeq	gene	2018349	2019218	.	-	.	ID=gene1964;Name=Dshi_1932;Dbxref=GeneID:5712926;gbkey=Gene;locus_tag=Dshi_1932
NC_009952.1	RefSeq	CDS	2018349	2019218	.	-	0	ID=cds1926;Name=YP_001533274.1;Parent=gene1964;Note=COG: COG0625 - Glutathione S-transferase%3B PFAM: PF02798%2C PF00043%3B SUPERFAMILY: SSF47616%2C SSF52833%3B SWISSPROT Q46845: Uncharacterized GST-like protein yghU;Dbxref=Genbank:YP_001533274.1,GeneID:5712926;gbkey=CDS;product=putative glutathione S-transferase family protein;protein_id=YP_001533274.1;transl_table=11
NC_009952.1	RefSeq	gene	2019318	2022293	.	-	.	ID=gene1965;Name=ileS;Dbxref=GeneID:5712927;gbkey=Gene;gene=ileS;locus_tag=Dshi_1933
NC_009952.1	RefSeq	CDS	2019318	2022293	.	-	0	ID=cds1927;Name=YP_001533275.1;Parent=gene1965;Note=IleRS%3B catalyzes the formation of isoleucyl-tRNA%28Ile%29 from isoleucine and tRNA%28Ile%29%3B since isoleucine and other amino acids such as valine are similar%2C there are additional editing function in this enzyme%3B one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA%28Ile%29%3B there are two active sites%2C one for aminoacylation and one for editing%3B class-I aminoacyl-tRNA synthetase family type 1 subfamily%3B some organisms carry two different copies of this enzyme;Dbxref=Genbank:YP_001533275.1,GeneID:5712927;gbkey=CDS;gene=ileS;product=isoleucyl-tRNA synthetase;protein_id=YP_001533275.1;transl_table=11
NC_009952.1	RefSeq	gene	2022645	2023316	.	+	.	ID=gene1966;Name=Dshi_1934;Dbxref=GeneID:5712928;gbkey=Gene;locus_tag=Dshi_1934
NC_009952.1	RefSeq	CDS	2022645	2023316	.	+	0	ID=cds1928;Name=YP_001533276.1;Parent=gene1966;Dbxref=Genbank:YP_001533276.1,GeneID:5712928;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533276.1;transl_table=11
NC_009952.1	RefSeq	gene	2023345	2024964	.	-	.	ID=gene1967;Name=Dshi_1935;Dbxref=GeneID:5712929;gbkey=Gene;locus_tag=Dshi_1935
NC_009952.1	RefSeq	CDS	2023345	2024964	.	-	0	ID=cds1929;Name=YP_001533277.1;Parent=gene1967;Note=COG: COG0492 - Thioredoxin reductase%3B PFAM: PF00027%2C PF00070%3B PROSITE: PS50042%3B SMART: SM00100%3B PRINTS: PR00469%2C PR00419%2C PR00368;Dbxref=Genbank:YP_001533277.1,GeneID:5712929;gbkey=CDS;product=putative thioredoxin reductase trxB with an additional cyclic nucleotide-monophosphate-binding domain;protein_id=YP_001533277.1;transl_table=11
NC_009952.1	RefSeq	gene	2024978	2025994	.	-	.	ID=gene1968;Name=Dshi_1936;Dbxref=GeneID:5712930;gbkey=Gene;locus_tag=Dshi_1936
NC_009952.1	RefSeq	CDS	2024978	2025994	.	-	0	ID=cds1930;Name=YP_001533278.1;Parent=gene1968;Note=TIGRFAM: TIGR01620 conserved hypothetical protein%3B COG: COG3768 - Predicted membrane protein%3B PFAM: pfam05128%3B family DUF697;Dbxref=Genbank:YP_001533278.1,GeneID:5712930;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533278.1;transl_table=11
NC_009952.1	RefSeq	gene	2025991	2027403	.	-	.	ID=gene1969;Name=Dshi_1937;Dbxref=GeneID:5712931;gbkey=Gene;locus_tag=Dshi_1937
NC_009952.1	RefSeq	CDS	2025991	2027403	.	-	0	ID=cds1931;Name=YP_001533279.1;Parent=gene1969;Note=PFAM: PF04317-YcjX-like family%2C DUF463%3B SWISSPROT P76046: Uncharacterized protein ycjX%3B COG: COG3106 - Predicted ATPase%3B DUF463;Dbxref=Genbank:YP_001533279.1,GeneID:5712931;gbkey=CDS;product=YcjX-like family protein;protein_id=YP_001533279.1;transl_table=11
NC_009952.1	RefSeq	gene	2027520	2028293	.	+	.	ID=gene1970;Name=truA;Dbxref=GeneID:5712932;gbkey=Gene;gene=truA;locus_tag=Dshi_1938
NC_009952.1	RefSeq	CDS	2027520	2028293	.	+	0	ID=cds1932;Name=YP_001533280.1;Parent=gene1970;Note=mediates pseudouridylation %28positions 38%2C 39%2C 40%29 at the tRNA anticodon region which contributes to the structural stability;Dbxref=Genbank:YP_001533280.1,GeneID:5712932;gbkey=CDS;gene=truA;product=tRNA pseudouridine synthase A;protein_id=YP_001533280.1;transl_table=11
NC_009952.1	RefSeq	gene	2028410	2029231	.	-	.	ID=gene1971;Name=Dshi_1939;Dbxref=GeneID:5712933;gbkey=Gene;locus_tag=Dshi_1939
NC_009952.1	RefSeq	CDS	2028410	2029231	.	-	0	ID=cds1933;Name=YP_001533281.1;Parent=gene1971;Note=COG: COG0600 - ABC-type nitrate%2Fsulfonate%2Fbicarbonate transport system%2C permease component%3B PFAM: PF00528%3B PROSITE: PS50928;Dbxref=Genbank:YP_001533281.1,GeneID:5712933;gbkey=CDS;product=putative ABC transporter permease;protein_id=YP_001533281.1;transl_table=11
NC_009952.1	RefSeq	gene	2029271	2030071	.	-	.	ID=gene1972;Name=Dshi_1940;Dbxref=GeneID:5712934;gbkey=Gene;locus_tag=Dshi_1940
NC_009952.1	RefSeq	CDS	2029271	2030071	.	-	0	ID=cds1934;Name=YP_001533282.1;Parent=gene1972;Note=COG: COG1116 - ABC-type nitrate%2Fsulfonate%2Fbicarbonate transport system%2C ATPase component%3B PFAM: PF00005%3B PROSITE: PS00211%2C PS50893%3B SMART: SM00382;Dbxref=Genbank:YP_001533282.1,GeneID:5712934;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=YP_001533282.1;transl_table=11
NC_009952.1	RefSeq	gene	2030122	2031135	.	-	.	ID=gene1973;Name=Dshi_1941;Dbxref=GeneID:5712935;gbkey=Gene;locus_tag=Dshi_1941
NC_009952.1	RefSeq	CDS	2030122	2031135	.	-	0	ID=cds1935;Name=YP_001533283.1;Parent=gene1973;Note=PFAM: PF09084-NMT1%2FTHI5 like%3B COG: COG0715 - ABC-type nitrate%2Fsulfonate%2Fbicarbonate transport systems%2C periplasmic components;Dbxref=Genbank:YP_001533283.1,GeneID:5712935;gbkey=CDS;product=NMT1%2FTHI5 family protein;protein_id=YP_001533283.1;transl_table=11
NC_009952.1	RefSeq	gene	2031291	2032652	.	-	.	ID=gene1974;Name=Dshi_1942;Dbxref=GeneID:5712936;gbkey=Gene;locus_tag=Dshi_1942
NC_009952.1	RefSeq	CDS	2031291	2032652	.	-	0	ID=cds1936;Name=YP_001533284.1;Parent=gene1974;Note=PFAM: PF08885;Dbxref=Genbank:YP_001533284.1,GeneID:5712936;gbkey=CDS;product=putative GSCFA family protein;protein_id=YP_001533284.1;transl_table=11
NC_009952.1	RefSeq	gene	2032700	2033968	.	-	.	ID=gene1975;Name=codA;Dbxref=GeneID:5712937;gbkey=Gene;gene=codA;locus_tag=Dshi_1943
NC_009952.1	RefSeq	CDS	2032700	2033968	.	-	0	ID=cds1937;Name=YP_001533285.1;Parent=gene1975;Note=Catalyzes the deamination of cytosine to uracil and ammonia;Dbxref=Genbank:YP_001533285.1,GeneID:5712937;gbkey=CDS;gene=codA;product=cytosine deaminase;protein_id=YP_001533285.1;transl_table=11
NC_009952.1	RefSeq	gene	2033976	2034707	.	-	.	ID=gene1976;Name=Dshi_1944;Dbxref=GeneID:5712938;gbkey=Gene;locus_tag=Dshi_1944
NC_009952.1	RefSeq	CDS	2033976	2034707	.	-	0	ID=cds1938;Name=YP_001533286.1;Parent=gene1976;Note=SUPERFAMILY: S-adenosyl-L-methionine-dependent methyltransferases%3B PFAM: PF05711 -Macrocin-O-methyltransferase %28TylF%29;Dbxref=Genbank:YP_001533286.1,GeneID:5712938;gbkey=CDS;product=putative methyltransferase;protein_id=YP_001533286.1;transl_table=11
NC_009952.1	RefSeq	gene	2034739	2035683	.	-	.	ID=gene1977;Name=Dshi_1945;Dbxref=GeneID:5712939;gbkey=Gene;locus_tag=Dshi_1945
NC_009952.1	RefSeq	CDS	2034739	2035683	.	-	0	ID=cds1939;Name=YP_001533287.1;Parent=gene1977;Note=COG: COG1079 - Uncharacterized ABC-type transport system%2C permease component%3B PFAM: PF02653;Dbxref=Genbank:YP_001533287.1,GeneID:5712939;gbkey=CDS;product=putative permease of branched-chain amino acid transport system;protein_id=YP_001533287.1;transl_table=11
NC_009952.1	RefSeq	gene	2035685	2036734	.	-	.	ID=gene1978;Name=Dshi_1946;Dbxref=GeneID:5712940;gbkey=Gene;locus_tag=Dshi_1946
NC_009952.1	RefSeq	CDS	2035685	2036734	.	-	0	ID=cds1940;Name=YP_001533288.1;Parent=gene1978;Note=COG4603 - ABC-type uncharacterized transport system%2C permease component%3B PFAM: PF02653;Dbxref=Genbank:YP_001533288.1,GeneID:5712940;gbkey=CDS;product=branched-chain amino acid ABCtransporter permease;protein_id=YP_001533288.1;transl_table=11
NC_009952.1	RefSeq	gene	2036724	2038268	.	-	.	ID=gene1979;Name=rbsA4;Dbxref=GeneID:5712941;gbkey=Gene;gene=rbsA4;locus_tag=Dshi_1947
NC_009952.1	RefSeq	CDS	2036724	2038268	.	-	0	ID=cds1941;Name=YP_001533289.1;Parent=gene1979;Note=SWISSPROT P04983: Ribose import ATP-binding protein rbsA%3B COG: COG3845 - ABC-type uncharacterized transport systems%2C ATPase components%3B PFAM: PF00005%3B PROSITE: PS00211%2C PS50893%3B SMART: SM00382;Dbxref=Genbank:YP_001533289.1,GeneID:5712941;gbkey=CDS;gene=rbsA4;product=ribose import ATP-binding protein;protein_id=YP_001533289.1;transl_table=11
NC_009952.1	RefSeq	gene	2038268	2039287	.	-	.	ID=gene1980;Name=rbsA4;Dbxref=GeneID:5712942;gbkey=Gene;gene=rbsA4;locus_tag=Dshi_1948
NC_009952.1	RefSeq	CDS	2038268	2039287	.	-	0	ID=cds1942;Name=YP_001533290.1;Parent=gene1980;Note=COG: COG1744 - Uncharacterized ABC-type transport system%2C periplasmic component%2Fsurface lipoprotein%3B PFAM: PF02608%3B PROSITE: PS00024;Dbxref=Genbank:YP_001533290.1,GeneID:5712942;gbkey=CDS;product=putative basic membrane protein;protein_id=YP_001533290.1;transl_table=11
NC_009952.1	RefSeq	gene	2039513	2041096	.	-	.	ID=gene1981;Name=Dshi_1949;Dbxref=GeneID:5712943;gbkey=Gene;locus_tag=Dshi_1949
NC_009952.1	RefSeq	CDS	2039513	2041096	.	-	0	ID=cds1943;Name=YP_001533291.1;Parent=gene1981;Dbxref=Genbank:YP_001533291.1,GeneID:5712943;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533291.1;transl_table=11
NC_009952.1	RefSeq	gene	2041261	2041860	.	+	.	ID=gene1982;Name=Dshi_1950;Dbxref=GeneID:5712944;gbkey=Gene;locus_tag=Dshi_1950
NC_009952.1	RefSeq	CDS	2041261	2041860	.	+	0	ID=cds1944;Name=YP_001533292.1;Parent=gene1982;Note=SUPERFAMILY: SSF52540%3B similar to hydrolase;Dbxref=Genbank:YP_001533292.1,GeneID:5712944;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533292.1;transl_table=11
NC_009952.1	RefSeq	gene	2041913	2045206	.	-	.	ID=gene1983;Name=Dshi_1951;Dbxref=GeneID:5712945;gbkey=Gene;locus_tag=Dshi_1951
NC_009952.1	RefSeq	CDS	2041913	2045206	.	-	0	ID=cds1945;Name=YP_001533293.1;Parent=gene1983;Note=PFAM: PF00529%3B COG: COG1566: Multidrug resistance efflux pump%3B related to HlyD family secretion proteins;Dbxref=Genbank:YP_001533293.1,GeneID:5712945;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533293.1;transl_table=11
NC_009952.1	RefSeq	gene	2045601	2046332	.	+	.	ID=gene1984;Name=Dshi_1952;Dbxref=GeneID:5712946;gbkey=Gene;locus_tag=Dshi_1952
NC_009952.1	RefSeq	CDS	2045601	2046332	.	+	0	ID=cds1946;Name=YP_001533294.1;Parent=gene1984;Dbxref=Genbank:YP_001533294.1,GeneID:5712946;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533294.1;transl_table=11
NC_009952.1	RefSeq	gene	2046386	2047312	.	+	.	ID=gene1985;Name=Dshi_1953;Dbxref=GeneID:5712947;gbkey=Gene;locus_tag=Dshi_1953
NC_009952.1	RefSeq	CDS	2046386	2047312	.	+	0	ID=cds1947;Name=YP_001533295.1;Parent=gene1985;Note=COG: COG3509 - Poly%283-hydroxybutyrate%29 depolymerase%3B Gene3D: G3DSA:3.40.50.1820%3B SUPERFAMILY: SSF53474;Dbxref=Genbank:YP_001533295.1,GeneID:5712947;gbkey=CDS;product=putative hydrolase;protein_id=YP_001533295.1;transl_table=11
NC_009952.1	RefSeq	gene	2047344	2048147	.	+	.	ID=gene1986;Name=Dshi_1954;Dbxref=GeneID:5712948;gbkey=Gene;locus_tag=Dshi_1954
NC_009952.1	RefSeq	CDS	2047344	2048147	.	+	0	ID=cds1948;Name=YP_001533296.1;Parent=gene1986;Note=PFAM: PF00106-short chain dehydrogenase%3B PRINTS: PR00081%3B COG: COG0300 - Short-chain dehydrogenases of various substrate specificities;Dbxref=Genbank:YP_001533296.1,GeneID:5712948;gbkey=CDS;product=putative short-chain dehydrogenase;protein_id=YP_001533296.1;transl_table=11
NC_009952.1	RefSeq	gene	2048152	2049948	.	-	.	ID=gene1987;Name=Dshi_1955;Dbxref=GeneID:5712949;gbkey=Gene;locus_tag=Dshi_1955
NC_009952.1	RefSeq	CDS	2048152	2049948	.	-	0	ID=cds1949;Name=YP_001533297.1;Parent=gene1987;Note=PFAM: PF00106%2C PF01370%3B PRINTS: PR00081%3B Gene3D: G3DSA:3.40.50.720%3B COG: COG1028 - Dehydrogenases with different specificities %28related to short-chain alcohol dehydrogenases%29;Dbxref=Genbank:YP_001533297.1,GeneID:5712949;gbkey=CDS;product=putative short-chain dehydrogenase;protein_id=YP_001533297.1;transl_table=11
NC_009952.1	RefSeq	gene	2049974	2050936	.	-	.	ID=gene1988;Name=Dshi_1956;Dbxref=GeneID:5712950;gbkey=Gene;locus_tag=Dshi_1956
NC_009952.1	RefSeq	CDS	2049974	2050936	.	-	0	ID=cds1950;Name=YP_001533298.1;Parent=gene1988;Note=PFAM: PF01370%3B COG: COG0451 - Nucleoside-diphosphate-sugar epimerases;Dbxref=Genbank:YP_001533298.1,GeneID:5712950;gbkey=CDS;product=putative NAD-dependent epimerase%2Fdehydratase;protein_id=YP_001533298.1;transl_table=11
NC_009952.1	RefSeq	gene	2051005	2052432	.	-	.	ID=gene1989;Name=Dshi_1957;Dbxref=GeneID:5712951;gbkey=Gene;locus_tag=Dshi_1957
NC_009952.1	RefSeq	CDS	2051005	2052432	.	-	0	ID=cds1951;Name=YP_001533299.1;Parent=gene1989;Note=COG: COG3063 - Tfp pilus assembly protein PilF%3B PFAM: PF00515 Tetratricopeptide repeat 1%2C PF07719 Tetratricopeptide repeat 2%3B PROSITE: PS50005-TPR repeat profile%2C PS50293-TPR repeat region circular profile%3B SMART: SM00028-Tetratricopeptide repeats%3B similar to tetratricopeptide repeat superfamily proteins;Dbxref=Genbank:YP_001533299.1,GeneID:5712951;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533299.1;transl_table=11
NC_009952.1	RefSeq	gene	2052491	2055133	.	-	.	ID=gene1990;Name=Dshi_1958;Dbxref=GeneID:5712952;gbkey=Gene;locus_tag=Dshi_1958
NC_009952.1	RefSeq	CDS	2052491	2055133	.	-	0	ID=cds1952;Name=YP_001533300.1;Parent=gene1990;Note=COG: COG0451 - Nucleoside-diphosphate-sugar epimerases%3B PFAM: PF01370%3B PROSITE: PS00178%2C PS00061%3B Gene3D: G3DSA:3.40.50.720;Dbxref=Genbank:YP_001533300.1,GeneID:5712952;gbkey=CDS;product=putative NAD-dependent epimerase%2Fdehydratase;protein_id=YP_001533300.1;transl_table=11
NC_009952.1	RefSeq	gene	2055139	2056056	.	-	.	ID=gene1991;Name=Dshi_5003;Dbxref=GeneID:5712953;gbkey=Gene;locus_tag=Dshi_5003
NC_009952.1	RefSeq	CDS	2055139	2056056	.	-	0	ID=cds1953;Name=YP_003422328.1;Parent=gene1991;Dbxref=Genbank:YP_003422328.1,GeneID:5712953;gbkey=CDS;product=hypothetical protein;protein_id=YP_003422328.1;transl_table=11
NC_009952.1	RefSeq	gene	2056060	2057664	.	-	.	ID=gene1992;Name=Dshi_1960;Dbxref=GeneID:5712954;gbkey=Gene;locus_tag=Dshi_1960
NC_009952.1	RefSeq	CDS	2056060	2057664	.	-	0	ID=cds1954;Name=YP_001533301.1;Parent=gene1992;Note=PFAM: PF01663-Type I phosphodiesterase %2F nucleotide pyrophosphatase%3B Gene3D: G3DSA:3.40.720.10-Alkaline Phosphatase%2C subunit A%3B SUPERFAMILY: Alkaline phosphatase-like;Dbxref=Genbank:YP_001533301.1,GeneID:5712954;gbkey=CDS;product=phosphodiesterase%2Fnucleotide pyrophosphatase;protein_id=YP_001533301.1;transl_table=11
NC_009952.1	RefSeq	gene	2057679	2057969	.	-	.	ID=gene1993;Name=Dshi_1961;Dbxref=GeneID:5712955;gbkey=Gene;locus_tag=Dshi_1961
NC_009952.1	RefSeq	CDS	2057679	2057969	.	-	0	ID=cds1955;Name=YP_001533302.1;Parent=gene1993;Note=PROSITE: PS50075%3B SUPERFAMILY: ACP-like%3B similar to acyl carrier protein;Dbxref=Genbank:YP_001533302.1,GeneID:5712955;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533302.1;transl_table=11
NC_009952.1	RefSeq	gene	2057989	2062884	.	-	.	ID=gene1994;Name=Dshi_1962;Dbxref=GeneID:5712956;gbkey=Gene;locus_tag=Dshi_1962
NC_009952.1	RefSeq	CDS	2057989	2062884	.	-	0	ID=cds1956;Name=YP_001533303.1;Parent=gene1994;Note=SWISSPROT Q03133: Erythronolide synthase%2C modules 5 and 6%3B Q03131: Erythronolide synthase%2C modules 1 and 2%3B Q03132: Erythronolide synthase%2C modules 3 and 4%3B PFAM: PF01648%2C PF00109%2C PF02801%2C PF00698%3B TIGRFAM: TIGR00556 phosphopantethiene--protein transferase domain%3B COG: COG3321 - Polyketide synthase modules and related proteins;Dbxref=Genbank:YP_001533303.1,GeneID:5712956;gbkey=CDS;product=putative modular PKS system;protein_id=YP_001533303.1;transl_table=11
NC_009952.1	RefSeq	gene	2062881	2070542	.	-	.	ID=gene1995;Name=Dshi_1963;Dbxref=GeneID:5712957;gbkey=Gene;locus_tag=Dshi_1963
NC_009952.1	RefSeq	CDS	2062881	2070542	.	-	0	ID=cds1957;Name=YP_001533304.1;Parent=gene1995;Note=SWISSPROT: Q03131: Erythronolide synthase%2C modules 1 and 2%3B Q03132: Erythronolide synthase%2C modules 3 and 4%3B PFAM: PF03060%2C PF08659%2C PF00109%2C PF02801%2C PF00698%3B TIGRFAM: TIGR02813 polyketide-type polyunsaturated fatty acid synthase PfaA%3B COG: COG3321 - Polyketide synthase modules and related proteins;Dbxref=Genbank:YP_001533304.1,GeneID:5712957;gbkey=CDS;product=putative modular PKS system;protein_id=YP_001533304.1;transl_table=11
NC_009952.1	RefSeq	gene	2071115	2072833	.	-	.	ID=gene1996;Name=Dshi_1964;Dbxref=GeneID:5712958;gbkey=Gene;locus_tag=Dshi_1964
NC_009952.1	RefSeq	CDS	2071115	2072833	.	-	0	ID=cds1958;Name=YP_001533305.1;Parent=gene1996;Note=TIGRFAM: TIGR01681 HAD-superfamily phosphatase%2C subfamily IIIC%3B TIGR01686 FkbH-like domain%3B COG: COG3882 - Predicted enzyme involved in methoxymalonyl-ACP biosynthesis%3B SUPERFAMILY: SGNH hydrolase%2C HAD-like%3B hydrolase %2F phosphatase related;Dbxref=Genbank:YP_001533305.1,GeneID:5712958;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533305.1;transl_table=11
NC_009952.1	RefSeq	gene	2072939	2073871	.	-	.	ID=gene1997;Name=Dshi_1965;Dbxref=GeneID:5712959;gbkey=Gene;locus_tag=Dshi_1965
NC_009952.1	RefSeq	CDS	2072939	2073871	.	-	0	ID=cds1959;Name=YP_001533306.1;Parent=gene1997;Note=SUPERFAMILY: SSF52540;Dbxref=Genbank:YP_001533306.1,GeneID:5712959;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533306.1;transl_table=11
NC_009952.1	RefSeq	gene	2074131	2075873	.	-	.	ID=gene1998;Name=lpdA;Dbxref=GeneID:5712960;gbkey=Gene;gene=lpdA;locus_tag=Dshi_1966
NC_009952.1	RefSeq	CDS	2074131	2075873	.	-	0	ID=cds1960;Name=YP_001533307.1;Parent=gene1998;Note=SWISSPROT P0A9P0: Dihydrolipoyl dehydrogenase%3B PFAM: PF00364%2C PF00070%2C PF02852%2C PF07992%3B PROSITE: PS50968%2C PS00189%2C PS00076%3B PRINTS: PR00945%2C PR00411%2C PR00368%3B TIGRFAM: TIGR01350 dihydrolipoamide dehydrogenase%3B COG: COG1249 - Pyruvate%2F2-oxoglutarate dehydrogenase complex%2C dihydrolipoamide dehydrogenase %28E3%29 component%2C and related enzymes;Dbxref=Genbank:YP_001533307.1,GeneID:5712960;gbkey=CDS;gene=lpdA;product=dihydrolipoyl dehydrogenase;protein_id=YP_001533307.1;transl_table=11
NC_009952.1	RefSeq	gene	2075886	2077187	.	-	.	ID=gene1999;Name=aceF;Dbxref=GeneID:5712961;gbkey=Gene;gene=aceF;locus_tag=Dshi_1967
NC_009952.1	RefSeq	CDS	2075886	2077187	.	-	0	ID=cds1961;Name=YP_001533308.1;Parent=gene1999;Note=TIGRFAM: TIGR01348 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase%2C long form%3B COG: COG0508 - Pyruvate%2F2-oxoglutarate dehydrogenase complex%2C dihydrolipoamide acyltransferase %28E2%29 component%2C and related enzymes%3B PFAM: PF02817;Dbxref=Genbank:YP_001533308.1,GeneID:5712961;gbkey=CDS;gene=aceF;product=dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex;protein_id=YP_001533308.1;transl_table=11
NC_009952.1	RefSeq	gene	2077242	2079899	.	-	.	ID=gene2000;Name=aceE;Dbxref=GeneID:5712962;gbkey=Gene;gene=aceE;locus_tag=Dshi_1968
NC_009952.1	RefSeq	CDS	2077242	2079899	.	-	0	ID=cds1962;Name=YP_001533309.1;Parent=gene2000;Note=E1 component%3B part of pyruvate dehydrogenase%3B forms a complex with DlaT and LpdC;Dbxref=Genbank:YP_001533309.1,GeneID:5712962;gbkey=CDS;gene=aceE;product=pyruvate dehydrogenase subunit E1;protein_id=YP_001533309.1;transl_table=11
NC_009952.1	RefSeq	gene	2080128	2081843	.	-	.	ID=gene2001;Name=Dshi_5004;Dbxref=GeneID:5712963;gbkey=Gene;locus_tag=Dshi_5004
NC_009952.1	RefSeq	CDS	2080128	2081843	.	-	0	ID=cds1963;Name=YP_003422329.1;Parent=gene2001;Dbxref=Genbank:YP_003422329.1,GeneID:5712963;gbkey=CDS;product=D-lactate dehydrogenase;protein_id=YP_003422329.1;transl_table=11
NC_009952.1	RefSeq	gene	2081843	2083909	.	-	.	ID=gene2002;Name=Dshi_1970;Dbxref=GeneID:5712964;gbkey=Gene;locus_tag=Dshi_1970
NC_009952.1	RefSeq	CDS	2081843	2083909	.	-	0	ID=cds1964;Name=YP_001533310.1;Parent=gene2002;Note=TIGRFAM: TIGR00786 TRAP transporter%2C DctM subunit%3B COG: COG4664 - TRAP-type mannitol%2Fchloroaromatic compound transport system%2C large permease component%3B PFAM: PF04290%2C PF06808;Dbxref=Genbank:YP_001533310.1,GeneID:5712964;gbkey=CDS;product=TRAP dicarboxylate transporter;protein_id=YP_001533310.1;transl_table=11
NC_009952.1	RefSeq	gene	2084030	2085007	.	-	.	ID=gene2003;Name=Dshi_1971;Dbxref=GeneID:5712965;gbkey=Gene;locus_tag=Dshi_1971
NC_009952.1	RefSeq	CDS	2084030	2085007	.	-	0	ID=cds1965;Name=YP_001533311.1;Parent=gene2003;Note=PFAM: PF03480-Bacterial extracellular solute-binding protein%2C family 7%3B COG: COG4663 - TRAP-type mannitol%2Fchloroaromatic compound transport system%2C periplasmic component;Dbxref=Genbank:YP_001533311.1,GeneID:5712965;gbkey=CDS;product=putative TRAP-transporter extracellular solute-binding protein;protein_id=YP_001533311.1;transl_table=11
NC_009952.1	RefSeq	gene	2085434	2086216	.	+	.	ID=gene2004;Name=Dshi_1972;Dbxref=GeneID:5712966;gbkey=Gene;locus_tag=Dshi_1972
NC_009952.1	RefSeq	CDS	2085434	2086216	.	+	0	ID=cds1966;Name=YP_001533312.1;Parent=gene2004;Note=SWISSPROT P0ACL9: Pyruvate dehydrogenase complex repressor %28pdhR%29%3B COG: COG2186 - Transcriptional regulators%3B PFAM: PF07729%2C PF00392%3B SMART: SM00345%3B PROSITE: PS50949%3B Gene3D: G3DSA:1.10.10.10%3B SUPERFAMILY: SSF46785;Dbxref=Genbank:YP_001533312.1,GeneID:5712966;gbkey=CDS;product=putative pyruvate dehydrogenase complex repressor;protein_id=YP_001533312.1;transl_table=11
NC_009952.1	RefSeq	gene	2086276	2087394	.	+	.	ID=gene2005;Name=Dshi_1973;Dbxref=GeneID:5712967;gbkey=Gene;locus_tag=Dshi_1973
NC_009952.1	RefSeq	CDS	2086276	2087394	.	+	0	ID=cds1967;Name=YP_001533313.1;Parent=gene2005;Note=PFAM PF07726: ATPase family associated with various cellular activities %28AAA%29%3B SMART: SM00382%3B COG: COG0714 - MoxR-like ATPases%3B related to ATPase %28AAA%29;Dbxref=Genbank:YP_001533313.1,GeneID:5712967;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533313.1;transl_table=11
NC_009952.1	RefSeq	gene	2087391	2088665	.	+	.	ID=gene2006;Name=Dshi_1974;Dbxref=GeneID:5712968;gbkey=Gene;locus_tag=Dshi_1974
NC_009952.1	RefSeq	CDS	2087391	2088665	.	+	0	ID=cds1968;Name=YP_001533314.1;Parent=gene2006;Note=COG: COG3864 - Uncharacterized protein conserved in bacteria;Dbxref=Genbank:YP_001533314.1,GeneID:5712968;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533314.1;transl_table=11
NC_009952.1	RefSeq	gene	2088990	2089682	.	-	.	ID=gene2007;Name=Dshi_1975;Dbxref=GeneID:5712969;gbkey=Gene;locus_tag=Dshi_1975
NC_009952.1	RefSeq	CDS	2088990	2089682	.	-	0	ID=cds1969;Name=YP_001533315.1;Parent=gene2007;Dbxref=Genbank:YP_001533315.1,GeneID:5712969;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533315.1;transl_table=11
NC_009952.1	RefSeq	gene	2089743	2090660	.	-	.	ID=gene2008;Name=Dshi_1976;Dbxref=GeneID:5712970;gbkey=Gene;locus_tag=Dshi_1976
NC_009952.1	RefSeq	CDS	2089743	2090660	.	-	0	ID=cds1970;Name=YP_001533316.1;Parent=gene2008;Note=PFAM: PF00294%3B PRINTS: PR00990;Dbxref=Genbank:YP_001533316.1,GeneID:5712970;gbkey=CDS;product=putative ribokinase;protein_id=YP_001533316.1;transl_table=11
NC_009952.1	RefSeq	gene	2090945	2092207	.	-	.	ID=gene2009;Name=Dshi_1977;Dbxref=GeneID:5712971;gbkey=Gene;locus_tag=Dshi_1977
NC_009952.1	RefSeq	CDS	2090945	2092207	.	-	0	ID=cds1971;Name=YP_001533317.1;Parent=gene2009;Note=PFAM: PF01094-Receptor family ligand binding region%3B PROSITE: PS51257%3B SWISSPROT P21175: Leucine-%2C isoleucine-%2C valine-%2C threonine-%2C and alanine-binding protein %5BPrecursor%5D %28braC%29%3B COG: COG0683 - ABC-type branched-chain amino acid transport systems%2C periplasmic component;Dbxref=Genbank:YP_001533317.1,GeneID:5712971;gbkey=CDS;product=periplasmic-binding protein;protein_id=YP_001533317.1;transl_table=11
NC_009952.1	RefSeq	gene	2092224	2093177	.	-	.	ID=gene2010;Name=Dshi_1978;Dbxref=GeneID:5712972;gbkey=Gene;locus_tag=Dshi_1978
NC_009952.1	RefSeq	CDS	2092224	2093177	.	-	0	ID=cds1972;Name=YP_001533318.1;Parent=gene2010;Note=PFAM: PF02653-Branched-chain amino acid transport system %2F permease component%3B COG: COG4177 - ABC-type branched-chain amino acid transport system%2C permease component;Dbxref=Genbank:YP_001533318.1,GeneID:5712972;gbkey=CDS;product=putative branched-chain amino acid transport system %2F permease;protein_id=YP_001533318.1;transl_table=11
NC_009952.1	RefSeq	gene	2093174	2094091	.	-	.	ID=gene2011;Name=Dshi_1979;Dbxref=GeneID:5712973;gbkey=Gene;locus_tag=Dshi_1979
NC_009952.1	RefSeq	CDS	2093174	2094091	.	-	0	ID=cds1973;Name=YP_001533319.1;Parent=gene2011;Note=SWISSPROT P0AEX7: High-affinity branched-chain amino acid transport system permease protein livH%3B PFAM: PF02653-Branched-chain amino acid transport system %2F permease component%3B COG: COG4177 - ABC-type branched-chain amino acid transport system%2C permease component;Dbxref=Genbank:YP_001533319.1,GeneID:5712973;gbkey=CDS;product=putative branched-chain amino acid transport system %2F permease;protein_id=YP_001533319.1;transl_table=11
NC_009952.1	RefSeq	gene	2094088	2094810	.	-	.	ID=gene2012;Name=Dshi_1980;Dbxref=GeneID:5712974;gbkey=Gene;locus_tag=Dshi_1980
NC_009952.1	RefSeq	CDS	2094088	2094810	.	-	0	ID=cds1974;Name=YP_001533320.1;Parent=gene2012;Note=SWISSPROT P22731: High-affinity branched-chain amino acid transport ATP-binding protein livF%3B PFAM: PF00005%3B PROSITE: PS50893%3B SMART: SM00382;Dbxref=Genbank:YP_001533320.1,GeneID:5712974;gbkey=CDS;product=putative high-affinity branched-chain amino acid transport ATP-binding protein;protein_id=YP_001533320.1;transl_table=11
NC_009952.1	RefSeq	gene	2094803	2095576	.	-	.	ID=gene2013;Name=Dshi_1981;Dbxref=GeneID:5712975;gbkey=Gene;locus_tag=Dshi_1981
NC_009952.1	RefSeq	CDS	2094803	2095576	.	-	0	ID=cds1975;Name=YP_001533321.1;Parent=gene2013;Note=SWISSPROT Q58663: branched-chain amino acid transport ATP-binding protein livG%3B PFAM: PF00005%3B PROSITE: PS00211%2C PS50893%3B SMART: SM00382;Dbxref=Genbank:YP_001533321.1,GeneID:5712975;gbkey=CDS;product=putative branched-chain amino acid transport ATP-binding protein;protein_id=YP_001533321.1;transl_table=11
NC_009952.1	RefSeq	gene	2095569	2096651	.	-	.	ID=gene2014;Name=Dshi_1982;Dbxref=GeneID:5712976;gbkey=Gene;locus_tag=Dshi_1982
NC_009952.1	RefSeq	CDS	2095569	2096651	.	-	0	ID=cds1976;Name=YP_001533322.1;Parent=gene2014;Note=PFAM: PF00248;Dbxref=Genbank:YP_001533322.1,GeneID:5712976;gbkey=CDS;product=aldo%2Fketo reductase family protein;protein_id=YP_001533322.1;transl_table=11
NC_009952.1	RefSeq	gene	2096648	2097025	.	-	.	ID=gene2015;Name=Dshi_1983;Dbxref=GeneID:5712977;gbkey=Gene;locus_tag=Dshi_1983
NC_009952.1	RefSeq	CDS	2096648	2097025	.	-	0	ID=cds1977;Name=YP_001533323.1;Parent=gene2015;Dbxref=Genbank:YP_001533323.1,GeneID:5712977;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533323.1;transl_table=11
NC_009952.1	RefSeq	gene	2097130	2097777	.	+	.	ID=gene2016;Name=Dshi_1984;Dbxref=GeneID:5712978;gbkey=Gene;locus_tag=Dshi_1984
NC_009952.1	RefSeq	CDS	2097130	2097777	.	+	0	ID=cds1978;Name=YP_001533324.1;Parent=gene2016;Note=SWISSPROT P76114: Uncharacterized HTH-type transcriptional regulator yncC%3B PFAM: PF07729%2C PF00392%3B Gene3D: G3DSA:1.10.10.10%3B COG: COG1802 - Transcriptional regulators;Dbxref=Genbank:YP_001533324.1,GeneID:5712978;gbkey=CDS;product=putative HTH-type transcriptional regulator;protein_id=YP_001533324.1;transl_table=11
NC_009952.1	RefSeq	gene	2097774	2099216	.	+	.	ID=gene2017;Name=Dshi_1985;Dbxref=GeneID:5712979;gbkey=Gene;locus_tag=Dshi_1985
NC_009952.1	RefSeq	CDS	2097774	2099216	.	+	0	ID=cds1979;Name=YP_001533325.1;Parent=gene2017;Note=COG: COG0667 - Predicted oxidoreductases %28related to aryl-alcohol dehydrogenases%29%3B PFAM: PF00248%2C PF01042%3B PRINTS: PR00069%3B SUPERFAMILY: SSF51430;Dbxref=Genbank:YP_001533325.1,GeneID:5712979;gbkey=CDS;product=aldo%2Fketo reductase family protein;protein_id=YP_001533325.1;transl_table=11
NC_009952.1	RefSeq	gene	2099648	2101816	.	+	.	ID=gene2018;Name=icd;Dbxref=GeneID:5712980;gbkey=Gene;gene=icd;locus_tag=Dshi_1986
NC_009952.1	RefSeq	CDS	2099648	2101816	.	+	0	ID=cds1980;Name=YP_001533326.1;Parent=gene2018;Note=TIGRFAM: TIGR00178 isocitrate dehydrogenase%2C NADP-dependent%2C monomeric type%3B COG: COG2838 - Monomeric isocitrate dehydrogenase%3B PFAM PF03971: Monomeric isocitrate dehydrogenase;Dbxref=Genbank:YP_001533326.1,GeneID:5712980;gbkey=CDS;gene=icd;product=monomeric isocitrate dehydrogenase;protein_id=YP_001533326.1;transl_table=11
NC_009952.1	RefSeq	gene	2102173	2102721	.	+	.	ID=gene2019;Name=Dshi_1987;Dbxref=GeneID:5712981;gbkey=Gene;locus_tag=Dshi_1987
NC_009952.1	RefSeq	CDS	2102173	2102721	.	+	0	ID=cds1981;Name=YP_001533327.1;Parent=gene2019;Note=similar to molybdenum import ATP-binding protein modC2;Dbxref=Genbank:YP_001533327.1,GeneID:5712981;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533327.1;transl_table=11
NC_009952.1	RefSeq	gene	2102821	2103216	.	+	.	ID=gene2020;Name=Dshi_1988;Dbxref=GeneID:5712982;gbkey=Gene;locus_tag=Dshi_1988
NC_009952.1	RefSeq	CDS	2102821	2103216	.	+	0	ID=cds1982;Name=YP_001533328.1;Parent=gene2020;Dbxref=Genbank:YP_001533328.1,GeneID:5712982;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533328.1;transl_table=11
NC_009952.1	RefSeq	gene	2103220	2104452	.	+	.	ID=gene2021;Name=Dshi_1989;Dbxref=GeneID:5712983;gbkey=Gene;locus_tag=Dshi_1989
NC_009952.1	RefSeq	CDS	2103220	2104452	.	+	0	ID=cds1983;Name=YP_001533329.1;Parent=gene2021;Note=PFAM: PF00529%3B COG: COG1566: Multidrug resistance efflux pump%3B related to HlyD family secretion proteins;Dbxref=Genbank:YP_001533329.1,GeneID:5712983;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533329.1;transl_table=11
NC_009952.1	RefSeq	gene	2104580	2104656	.	+	.	ID=gene2022;Name=Dshi_6039;Dbxref=GeneID:5712984;gbkey=Gene;locus_tag=Dshi_6039
NC_009952.1	RefSeq	tRNA	2104580	2104656	.	+	.	ID=rna38;Parent=gene2022;Dbxref=GeneID:5712984;codons=46;gbkey=tRNA;product=tRNA-Arg
NC_009952.1	RefSeq	exon	2104580	2104656	.	+	.	ID=id42;Parent=rna38;Dbxref=GeneID:5712984;codons=46;gbkey=tRNA;product=tRNA-Arg
NC_009952.1	RefSeq	gene	2104752	2106995	.	-	.	ID=gene2023;Name=Dshi_1990;Dbxref=GeneID:5712985;gbkey=Gene;locus_tag=Dshi_1990
NC_009952.1	RefSeq	CDS	2104752	2106995	.	-	0	ID=cds1984;Name=YP_001533330.1;Parent=gene2023;Note=PFAM: PF01636%3B SUPERFAMILY: SSF56112%3B COG: COG0510 - Predicted choline kinase involved in LPS biosynthesis;Dbxref=Genbank:YP_001533330.1,GeneID:5712985;gbkey=CDS;product=protein kinase-like protein;protein_id=YP_001533330.1;transl_table=11
NC_009952.1	RefSeq	gene	2106982	2108817	.	-	.	ID=gene2024;Name=Dshi_1991;Dbxref=GeneID:5712986;gbkey=Gene;locus_tag=Dshi_1991
NC_009952.1	RefSeq	CDS	2106982	2108817	.	-	0	ID=cds1985;Name=YP_001533331.1;Parent=gene2024;Note=PROSITE: PS50893%2C PS50929%3B PFAM: PF00664%2C PF00005%3B SMART: SM00382;Dbxref=Genbank:YP_001533331.1,GeneID:5712986;gbkey=CDS;product=putative multidrug export ATP-binding%2Fpermease;protein_id=YP_001533331.1;transl_table=11
NC_009952.1	RefSeq	gene	2108817	2109965	.	-	.	ID=gene2025;Name=Dshi_1992;Dbxref=GeneID:5712987;gbkey=Gene;locus_tag=Dshi_1992
NC_009952.1	RefSeq	CDS	2108817	2109965	.	-	0	ID=cds1986;Name=YP_001533332.1;Parent=gene2025;Note=PFAM: PF00534%3B related to glycosyl transferase group 1;Dbxref=Genbank:YP_001533332.1,GeneID:5712987;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533332.1;transl_table=11
NC_009952.1	RefSeq	gene	2109965	2111209	.	-	.	ID=gene2026;Name=Dshi_1993;Dbxref=GeneID:5712988;gbkey=Gene;locus_tag=Dshi_1993
NC_009952.1	RefSeq	CDS	2109965	2111209	.	-	0	ID=cds1987;Name=YP_001533333.1;Parent=gene2026;Note=PFAM: PF00534;Dbxref=Genbank:YP_001533333.1,GeneID:5712988;gbkey=CDS;product=putative glycosyltransferase;protein_id=YP_001533333.1;transl_table=11
NC_009952.1	RefSeq	gene	2111233	2112393	.	-	.	ID=gene2027;Name=Dshi_1994;Dbxref=GeneID:5712989;gbkey=Gene;locus_tag=Dshi_1994
NC_009952.1	RefSeq	CDS	2111233	2112393	.	-	0	ID=cds1988;Name=YP_001533334.1;Parent=gene2027;Note=COG: COG4671 - Predicted glycosyl transferase%3B SUPERFAMILY: SSF53756 UDP-Glycosyltransferase%2Fglycogen phosphorylase%3B Gene3D: G3DSA:3.40.50.2000;Dbxref=Genbank:YP_001533334.1,GeneID:5712989;gbkey=CDS;product=putative glycosyltransferase;protein_id=YP_001533334.1;transl_table=11
NC_009952.1	RefSeq	gene	2113662	2114381	.	+	.	ID=gene2028;Name=Dshi_1995;Dbxref=GeneID:5712990;gbkey=Gene;locus_tag=Dshi_1995
NC_009952.1	RefSeq	CDS	2113662	2114381	.	+	0	ID=cds1989;Name=YP_001533335.1;Parent=gene2028;Dbxref=Genbank:YP_001533335.1,GeneID:5712990;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533335.1;transl_table=11
NC_009952.1	RefSeq	gene	2114512	2115816	.	-	.	ID=gene2029;Name=xylA;Dbxref=GeneID:5712991;gbkey=Gene;gene=xylA;locus_tag=Dshi_1996
NC_009952.1	RefSeq	CDS	2114512	2115816	.	-	0	ID=cds1990;Name=YP_001533336.1;Parent=gene2029;Note=catalyzes the interconversion of D-xylose to D-xylulose;Dbxref=Genbank:YP_001533336.1,GeneID:5712991;gbkey=CDS;gene=xylA;product=xylose isomerase;protein_id=YP_001533336.1;transl_table=11
NC_009952.1	RefSeq	gene	2115813	2117255	.	-	.	ID=gene2030;Name=xylB2;Dbxref=GeneID:5712992;gbkey=Gene;gene=xylB2;locus_tag=Dshi_1997
NC_009952.1	RefSeq	CDS	2115813	2117255	.	-	0	ID=cds1991;Name=YP_001533337.1;Parent=gene2030;Note=SWISSPROT P09099: Xylose kinase%3B PFAM: PF00370%2C PF02782%3B TIGRFAM: TIGR01312 D-xylulose kinase%3B COG: COG1070 - Sugar %28pentulose and hexulose%29 kinases;Dbxref=Genbank:YP_001533337.1,GeneID:5712992;gbkey=CDS;gene=xylB2;product=xylose kinase;protein_id=YP_001533337.1;transl_table=11
NC_009952.1	RefSeq	gene	2117255	2118001	.	-	.	ID=gene2031;Name=xylB2;Dbxref=GeneID:5712993;gbkey=Gene;gene=xylB2;locus_tag=Dshi_1998
NC_009952.1	RefSeq	CDS	2117255	2118001	.	-	0	ID=cds1992;Name=YP_001533338.1;Parent=gene2031;Note=SWISSPROT P04983: Ribose import ATP-binding protein rbsA%3B COG: COG1129 - ABC-type sugar transport system%2C ATPase component%2C ATPase components%3B PFAM: PF00005%3B PROSITE: PS50893%3B SMART: SM00382;Dbxref=Genbank:YP_001533338.1,GeneID:5712993;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=YP_001533338.1;transl_table=11
NC_009952.1	RefSeq	gene	2117998	2119305	.	-	.	ID=gene2032;Name=xylH;Dbxref=GeneID:5712994;gbkey=Gene;gene=xylH;locus_tag=Dshi_1999
NC_009952.1	RefSeq	CDS	2117998	2119305	.	-	0	ID=cds1993;Name=YP_001533339.1;Parent=gene2032;Note=SWISSPROT P0AGI4: Xylose transport system permease protein xylH%3B COG: COG4214 - ABC-type xylose transport system%2C permease component%3B PFAM: PF02653;Dbxref=Genbank:YP_001533339.1,GeneID:5712994;gbkey=CDS;gene=xylH;product=xylose transport system permease;protein_id=YP_001533339.1;transl_table=11
NC_009952.1	RefSeq	gene	2119423	2120445	.	-	.	ID=gene2033;Name=Dshi_2000;Dbxref=GeneID:5712995;gbkey=Gene;locus_tag=Dshi_2000
NC_009952.1	RefSeq	CDS	2119423	2120445	.	-	0	ID=cds1994;Name=YP_001533340.1;Parent=gene2033;Note=SWISSPROT P37387: D-xylose-binding periplasmic protein %5BPrecursor%5D%3B TIGRFAM: TIGR02634 D-xylose ABC transporter%2C substrate-binding protein%3B COG: COG4213 - ABC-type xylose transport system%2C periplasmic component;Dbxref=Genbank:YP_001533340.1,GeneID:5712995;gbkey=CDS;product=D-xylose-binding periplasmic protein xylF;protein_id=YP_001533340.1;transl_table=11
NC_009952.1	RefSeq	gene	2120658	2121902	.	+	.	ID=gene2034;Name=Dshi_2001;Dbxref=GeneID:5712996;gbkey=Gene;locus_tag=Dshi_2001
NC_009952.1	RefSeq	CDS	2120658	2121902	.	+	0	ID=cds1995;Name=YP_001533341.1;Parent=gene2034;Note=SWISSPROT Q44406: Xylose repressor xylR. The entry has no evidence at protein level%2C but the colocation with the xylose operon supports the annotation. COG: COG1940 - Transcriptional regulator%2Fsugar kinase%3B PFAM: PF00480;Dbxref=Genbank:YP_001533341.1,GeneID:5712996;gbkey=CDS;product=putative xylose repressor;protein_id=YP_001533341.1;transl_table=11
NC_009952.1	RefSeq	gene	2121899	2123377	.	+	.	ID=gene2035;Name=Dshi_2002;Dbxref=GeneID:5712997;gbkey=Gene;locus_tag=Dshi_2002
NC_009952.1	RefSeq	CDS	2121899	2123377	.	+	0	ID=cds1996;Name=YP_001533342.1;Parent=gene2035;Note=SUPERFAMILY: SSF69318;Dbxref=Genbank:YP_001533342.1,GeneID:5712997;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533342.1;transl_table=11
NC_009952.1	RefSeq	gene	2123844	2124359	.	+	.	ID=gene2036;Name=Dshi_2003;Dbxref=GeneID:5712998;gbkey=Gene;locus_tag=Dshi_2003
NC_009952.1	RefSeq	CDS	2123844	2124359	.	+	0	ID=cds1997;Name=YP_001533343.1;Parent=gene2036;Note=TIGRFAM: TIGR01409;Dbxref=Genbank:YP_001533343.1,GeneID:5712998;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533343.1;transl_table=11
NC_009952.1	RefSeq	gene	2124331	2124954	.	+	.	ID=gene2037;Name=Dshi_2004;Dbxref=GeneID:5712999;gbkey=Gene;locus_tag=Dshi_2004
NC_009952.1	RefSeq	CDS	2124331	2124954	.	+	0	ID=cds1998;Name=YP_001533344.1;Parent=gene2037;Note=PFAM: PF01794;Dbxref=Genbank:YP_001533344.1,GeneID:5712999;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533344.1;transl_table=11
NC_009952.1	RefSeq	gene	2125127	2126482	.	-	.	ID=gene2038;Name=Dshi_2005;Dbxref=GeneID:5713000;gbkey=Gene;locus_tag=Dshi_2005
NC_009952.1	RefSeq	CDS	2125127	2126482	.	-	0	ID=cds1999;Name=YP_001533345.1;Parent=gene2038;Note=PFAM: PF03150%3B Gene3D: G3DSA:1.10.760.10%3B PROSITE: PS51007;Dbxref=Genbank:YP_001533345.1,GeneID:5713000;gbkey=CDS;product=putative cytochrome c peroxidase;protein_id=YP_001533345.1;transl_table=11
NC_009952.1	RefSeq	gene	2126545	2126964	.	-	.	ID=gene2039;Name=Dshi_2006;Dbxref=GeneID:5713001;gbkey=Gene;locus_tag=Dshi_2006
NC_009952.1	RefSeq	CDS	2126545	2126964	.	-	0	ID=cds2000;Name=YP_001533346.1;Parent=gene2039;Note=DK%3B SWISSPROT O34627: Blue-light photoreceptor%3B PFAM: PF08447%3B SMART: SM00086%2C SM00091%3B PROSITE: PS50112%2C PS50113. TD%3B 1%29 similar to known LOV domains %28e.g SB1 and SB2 from Pseudomonas putida%29%3B 2%29 highly conserved LOV consensus region including the photoactive Cys;Dbxref=Genbank:YP_001533346.1,GeneID:5713001;gbkey=CDS;product=putative blue-light photoreceptor;protein_id=YP_001533346.1;transl_table=11
NC_009952.1	RefSeq	gene	2127207	2127674	.	-	.	ID=gene2040;Name=Dshi_2007;Dbxref=GeneID:5713002;gbkey=Gene;locus_tag=Dshi_2007
NC_009952.1	RefSeq	CDS	2127207	2127674	.	-	0	ID=cds2001;Name=YP_001533347.1;Parent=gene2040;Note=PFAM: PF00293%3B Gene3D: G3DSA:3.90.79.10%3B SUPERFAMILY: SSF55811%3B similar to NUDIX hydrolase;Dbxref=Genbank:YP_001533347.1,GeneID:5713002;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533347.1;transl_table=11
NC_009952.1	RefSeq	gene	2127799	2128614	.	+	.	ID=gene2041;Name=Dshi_2008;Dbxref=GeneID:5713003;gbkey=Gene;locus_tag=Dshi_2008
NC_009952.1	RefSeq	CDS	2127799	2128614	.	+	0	ID=cds2002;Name=YP_001533348.1;Parent=gene2041;Note=SWISSPROT P0ACL0: Glycerol-3-phosphate regulon repressor%3B COG: COG1349 - Transcriptional regulators of sugar metabolism%3B PFAM: PF08220%2C PF00455%3B PROSITE: PS00894%2C PS51000%3B SMART: SM00420;Dbxref=Genbank:YP_001533348.1,GeneID:5713003;gbkey=CDS;product=putative glycerol-3-phosphate regulon repressor;protein_id=YP_001533348.1;transl_table=11
NC_009952.1	RefSeq	gene	2128649	2129623	.	+	.	ID=gene2042;Name=Dshi_2009;Dbxref=GeneID:5713004;gbkey=Gene;locus_tag=Dshi_2009
NC_009952.1	RefSeq	CDS	2128649	2129623	.	+	0	ID=cds2003;Name=YP_001533349.1;Parent=gene2042;Note=TIGRFAM: TIGR01098 phosphonates-binding periplasmic protein%3B COG: COG3221 - ABC-type phosphate%2Fphosphonate transport system%2C periplasmic component%3B SUPERFAMILY: SSF53850;Dbxref=Genbank:YP_001533349.1,GeneID:5713004;gbkey=CDS;product=putative phosphonates-binding periplasmic protein;protein_id=YP_001533349.1;transl_table=11
NC_009952.1	RefSeq	gene	2129686	2130483	.	+	.	ID=gene2043;Name=phnC1;Dbxref=GeneID:5713005;gbkey=Gene;gene=phnC1;locus_tag=Dshi_2010
NC_009952.1	RefSeq	CDS	2129686	2130483	.	+	0	ID=cds2004;Name=YP_001533350.1;Parent=gene2043;Note=TIGRFAM: TIGR02315 phosphonate ABC transporter%2C ATP-binding protein%3B DK%3B COG3638 - ABC-type phosphate%2Fphosphonate transport system%2C ATPase component%3B PFAM: PF00005%3B SMART: SM00382%3B PROSITE: PS00211%2C PS50893%2C PS51249;Dbxref=Genbank:YP_001533350.1,GeneID:5713005;gbkey=CDS;gene=phnC1;product=phosphonates import ATP-binding protein;protein_id=YP_001533350.1;transl_table=11
NC_009952.1	RefSeq	gene	2130480	2131292	.	+	.	ID=gene2044;Name=phnC1;Dbxref=GeneID:5713006;gbkey=Gene;gene=phnC1;locus_tag=Dshi_2011
NC_009952.1	RefSeq	CDS	2130480	2131292	.	+	0	ID=cds2005;Name=YP_001533351.1;Parent=gene2044;Note=TIGRFAM: TIGR01097 phosphonate ABC transporter%2C permease protein%3B COG: COG3639 - ABC-type phosphate%2Fphosphonate transport system%2C permease component%3B PFAM: PF00528%3B PROSITE: PS50928%3B associated with phosphonates transport system;Dbxref=Genbank:YP_001533351.1,GeneID:5713006;gbkey=CDS;product=putative ABC transporter inner membrane component;protein_id=YP_001533351.1;transl_table=11
NC_009952.1	RefSeq	gene	2131292	2132107	.	+	.	ID=gene2045;Name=Dshi_2012;Dbxref=GeneID:5713007;gbkey=Gene;locus_tag=Dshi_2012
NC_009952.1	RefSeq	CDS	2131292	2132107	.	+	0	ID=cds2006;Name=YP_001533352.1;Parent=gene2045;Note=TIGRFAM: TIGR01097 phosphonate ABC transporter%2C permease protein%3B COG: COG3639 - ABC-type phosphate%2Fphosphonate transport system%2C permease component%3B PFAM: PF00528%3B PROSITE: PS50928%3B associated with phosphonates transport system;Dbxref=Genbank:YP_001533352.1,GeneID:5713007;gbkey=CDS;product=putative ABC transporter inner membrane component;protein_id=YP_001533352.1;transl_table=11
NC_009952.1	RefSeq	gene	2132104	2133009	.	+	.	ID=gene2046;Name=Dshi_2013;Dbxref=GeneID:5713008;gbkey=Gene;locus_tag=Dshi_2013
NC_009952.1	RefSeq	CDS	2132104	2133009	.	+	0	ID=cds2007;Name=YP_001533353.1;Parent=gene2046;Note=PFAM: PF00702%3B COG: COG0647 - Predicted sugar phosphatases of the HAD superfamily%3B TIGRFAM: TIGR01459 HAD-superfamily class IIA hydrolase%3B TIGR01460 Haloacid Dehalogenase Superfamily Class %28subfamily%29 IIA%3B similar to nagD%2C associated with phosphonates transport system;Dbxref=Genbank:YP_001533353.1,GeneID:5713008;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533353.1;transl_table=11
NC_009952.1	RefSeq	gene	2133086	2134387	.	+	.	ID=gene2047;Name=ugpB1;Dbxref=GeneID:5713009;gbkey=Gene;gene=ugpB1;locus_tag=Dshi_2014
NC_009952.1	RefSeq	CDS	2133086	2134387	.	+	0	ID=cds2008;Name=YP_001533354.1;Parent=gene2047;Note=SWISSPROT P0AG80: sn-glycerol-3-phosphate-binding periplasmic protein ugpB %5BPrecursor%5D%3B COG: COG1653 - ABC-type sugar transport system%2C periplasmic component%3B PFAM: PF01547%3B SUPERFAMILY: SSF53850%3B Gene3D: G3DSA:3.40.190.10;Dbxref=Genbank:YP_001533354.1,GeneID:5713009;gbkey=CDS;gene=ugpB1;product=sn-glycerol-3-phosphate-binding periplasmic protein ugpB;protein_id=YP_001533354.1;transl_table=11
NC_009952.1	RefSeq	gene	2134480	2135361	.	+	.	ID=gene2048;Name=ugpA4;Dbxref=GeneID:5713010;gbkey=Gene;gene=ugpA4;locus_tag=Dshi_2015
NC_009952.1	RefSeq	CDS	2134480	2135361	.	+	0	ID=cds2009;Name=YP_001533355.1;Parent=gene2048;Note=SWISSPROT P10905: sn-glycerol-3-phosphate transport system permease protein ugpA%3B PFAM: PF00528%3B PROSITE: PS50928%3B COG1175 - ABC-type sugar transport systems%2C permease components;Dbxref=Genbank:YP_001533355.1,GeneID:5713010;gbkey=CDS;gene=ugpA4;product=sn-glycerol-3-phosphate transport system permease;protein_id=YP_001533355.1;transl_table=11
NC_009952.1	RefSeq	gene	2135361	2136215	.	+	.	ID=gene2049;Name=ugpE3;Dbxref=GeneID:5713011;gbkey=Gene;gene=ugpE3;locus_tag=Dshi_2016
NC_009952.1	RefSeq	CDS	2135361	2136215	.	+	0	ID=cds2010;Name=YP_001533356.1;Parent=gene2049;Note=SWISSPROT P10906: sn-glycerol-3-phosphate transport system permease protein ugpE%3B PFAM: PF00528%3B PROSITE: PS50928%3B COG: COG0395 - ABC-type sugar transport system%2C permease component;Dbxref=Genbank:YP_001533356.1,GeneID:5713011;gbkey=CDS;gene=ugpE3;product=sn-glycerol-3-phosphate transport system permease;protein_id=YP_001533356.1;transl_table=11
NC_009952.1	RefSeq	gene	2136216	2137217	.	+	.	ID=gene2050;Name=ugpC4;Dbxref=GeneID:5713012;gbkey=Gene;gene=ugpC4;locus_tag=Dshi_2017
NC_009952.1	RefSeq	CDS	2136216	2137217	.	+	0	ID=cds2011;Name=YP_001533357.1;Parent=gene2050;Note=SWISSPROT P10907: sn-glycerol-3-phosphate import ATP-binding protein ugpC%3B PFAM: PF00005%2C PF08402%3B PROSITE: PS00211%2C PS50893%3B SMART: SM00382;Dbxref=Genbank:YP_001533357.1,GeneID:5713012;gbkey=CDS;gene=ugpC4;product=sn-glycerol-3-phosphate import ATP-binding protein;protein_id=YP_001533357.1;transl_table=11
NC_009952.1	RefSeq	gene	2137369	2137632	.	+	.	ID=gene2051;Name=Dshi_2018;Dbxref=GeneID:5713013;gbkey=Gene;locus_tag=Dshi_2018
NC_009952.1	RefSeq	CDS	2137369	2137632	.	+	0	ID=cds2012;Name=YP_001533358.1;Parent=gene2051;Dbxref=Genbank:YP_001533358.1,GeneID:5713013;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533358.1;transl_table=11
NC_009952.1	RefSeq	gene	2137715	2139322	.	-	.	ID=gene2052;Name=Dshi_2019;Dbxref=GeneID:5713014;gbkey=Gene;locus_tag=Dshi_2019
NC_009952.1	RefSeq	CDS	2137715	2139322	.	-	0	ID=cds2013;Name=YP_001533359.1;Parent=gene2052;Note=COG: COG0069 - Glutamate synthase domain 2%3B PFAM: PF01645%3B Gene3D: G3DSA:3.20.20.70;Dbxref=Genbank:YP_001533359.1,GeneID:5713014;gbkey=CDS;product=putative glutamate synthase %5BNADPH%5D large chain;protein_id=YP_001533359.1;transl_table=11
NC_009952.1	RefSeq	gene	2139424	2141055	.	-	.	ID=gene2053;Name=pgm;Dbxref=GeneID:5713015;gbkey=Gene;gene=pgm;locus_tag=Dshi_2020
NC_009952.1	RefSeq	CDS	2139424	2141055	.	-	0	ID=cds2014;Name=YP_001533360.1;Parent=gene2053;Note=catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate;Dbxref=Genbank:YP_001533360.1,GeneID:5713015;gbkey=CDS;gene=pgm;product=phosphoglucomutase;protein_id=YP_001533360.1;transl_table=11
NC_009952.1	RefSeq	gene	2141284	2142312	.	+	.	ID=gene2054;Name=Dshi_2021;Dbxref=GeneID:5713016;gbkey=Gene;locus_tag=Dshi_2021
NC_009952.1	RefSeq	CDS	2141284	2142312	.	+	0	ID=cds2015;Name=YP_001533361.1;Parent=gene2054;Note=SWISSPROT Q9HTX3: Probable binding protein component of ABC iron transporter PA5217 %5BPrecursor%5D%3B COG: COG1840 - ABC-type Fe3%2B transport system%2C periplasmic component%3B PFAM: PF01547%3B SUPERFAMILY: SSF53850%3B Gene3D: G3DSA:3.40.190.10;Dbxref=Genbank:YP_001533361.1,GeneID:5713016;gbkey=CDS;product=putative-binding protein component of ABC iron transporter;protein_id=YP_001533361.1;transl_table=11
NC_009952.1	RefSeq	gene	2142399	2142815	.	+	.	ID=gene2055;Name=Dshi_2022;Dbxref=GeneID:5713017;gbkey=Gene;locus_tag=Dshi_2022
NC_009952.1	RefSeq	CDS	2142399	2142815	.	+	0	ID=cds2016;Name=YP_001533362.1;Parent=gene2055;Note=no shine dalgarno sequence%2C no Swiss-Prot or InterPro Hits%2C no similar proteins in ncbi database. Probably pseudogene%3F%3F%3F;Dbxref=Genbank:YP_001533362.1,GeneID:5713017;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533362.1;transl_table=11
NC_009952.1	RefSeq	gene	2142820	2144499	.	-	.	ID=gene2056;Name=Dshi_2023;Dbxref=GeneID:5713018;gbkey=Gene;locus_tag=Dshi_2023
NC_009952.1	RefSeq	CDS	2142820	2144499	.	-	0	ID=cds2017;Name=YP_001533363.1;Parent=gene2056;Note=PFAM: PF00528-Binding-protein-dependent transport system inner membrane component%3B COG: COG1178 - ABC-type Fe3%2B transport system%2C permease component%3B PROSITE: PS50928;Dbxref=Genbank:YP_001533363.1,GeneID:5713018;gbkey=CDS;product=putative ABC transporter permease;protein_id=YP_001533363.1;transl_table=11
NC_009952.1	RefSeq	gene	2144760	2145515	.	-	.	ID=gene2057;Name=Dshi_2024;Dbxref=GeneID:5713019;gbkey=Gene;locus_tag=Dshi_2024
NC_009952.1	RefSeq	CDS	2144760	2145515	.	-	0	ID=cds2018;Name=YP_001533364.1;Parent=gene2057;Note=PFAM: PF01925;Dbxref=Genbank:YP_001533364.1,GeneID:5713019;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533364.1;transl_table=11
NC_009952.1	RefSeq	gene	2145522	2146214	.	-	.	ID=gene2058;Name=Dshi_2025;Dbxref=GeneID:5713020;gbkey=Gene;locus_tag=Dshi_2025
NC_009952.1	RefSeq	CDS	2145522	2146214	.	-	0	ID=cds2019;Name=YP_001533365.1;Parent=gene2058;Note=PFAM: PF07385-Protein of unknown function %28DUF1498%29%3B COG: COG3822 - ABC-type sugar transport system%2C auxiliary component;Dbxref=Genbank:YP_001533365.1,GeneID:5713020;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533365.1;transl_table=11
NC_009952.1	RefSeq	gene	2146276	2147046	.	-	.	ID=gene2059;Name=Dshi_2026;Dbxref=GeneID:5713021;gbkey=Gene;locus_tag=Dshi_2026
NC_009952.1	RefSeq	CDS	2146276	2147046	.	-	0	ID=cds2020;Name=YP_001533366.1;Parent=gene2059;Note=COG: COG1540 - Uncharacterized proteins%2C homologs of lactam utilization protein B%3B PFAM: PF03746%3B SWISPROT Q5LMA4: UPF0271 protein SPO3659;Dbxref=Genbank:YP_001533366.1,GeneID:5713021;gbkey=CDS;product=LamB%2FYcsF family protein;protein_id=YP_001533366.1;transl_table=11
NC_009952.1	RefSeq	gene	2147043	2148059	.	-	.	ID=gene2060;Name=Dshi_2027;Dbxref=GeneID:5713022;gbkey=Gene;locus_tag=Dshi_2027
NC_009952.1	RefSeq	CDS	2147043	2148059	.	-	0	ID=cds2021;Name=YP_001533367.1;Parent=gene2060;Note=PFAM: PF02626%3B SMART: SM00797%3B TIGRFAM: TIGR00724 biotin-dependent carboxylase uncharacterized domain%3B COG: COG1984 - Allophanate hydrolase subunit 2;Dbxref=Genbank:YP_001533367.1,GeneID:5713022;gbkey=CDS;product=putative allophanate hydrolase subunit 2;protein_id=YP_001533367.1;transl_table=11
NC_009952.1	RefSeq	gene	2148056	2148793	.	-	.	ID=gene2061;Name=Dshi_2028;Dbxref=GeneID:5713023;gbkey=Gene;locus_tag=Dshi_2028
NC_009952.1	RefSeq	CDS	2148056	2148793	.	-	0	ID=cds2022;Name=YP_001533368.1;Parent=gene2061;Note=TIGRFAM: TIGR00370 conserved hypothetical protein TIGR00370%3B COG: COG2049 - Allophanate hydrolase subunit 1%3B PFAM: PF02682%3B SMART: SM00796;Dbxref=Genbank:YP_001533368.1,GeneID:5713023;gbkey=CDS;product=putative allophanate hydrolase subunit 1;protein_id=YP_001533368.1;transl_table=11
NC_009952.1	RefSeq	gene	2149164	2150222	.	-	.	ID=gene2062;Name=Dshi_2029;Dbxref=GeneID:5713024;gbkey=Gene;locus_tag=Dshi_2029
NC_009952.1	RefSeq	CDS	2149164	2150222	.	-	0	ID=cds2023;Name=YP_001533369.1;Parent=gene2062;Note=SWISSPROT P0ACP7: HTH-type transcriptional repressor purR%3B PFAM: PF00356%2C PF00532%3B SMART: SM00354%3B PROSITE: PS50932%3B SUPERFAMILY: SSF47413%3B COG: COG1609 - Transcriptional regulators;Dbxref=Genbank:YP_001533369.1,GeneID:5713024;gbkey=CDS;product=HTH-type transcriptional repressor;protein_id=YP_001533369.1;transl_table=11
NC_009952.1	RefSeq	gene	2150383	2150574	.	+	.	ID=gene2063;Name=Dshi_2030;Dbxref=GeneID:5713025;gbkey=Gene;locus_tag=Dshi_2030
NC_009952.1	RefSeq	CDS	2150383	2150574	.	+	0	ID=cds2024;Name=YP_001533370.1;Parent=gene2063;Dbxref=Genbank:YP_001533370.1,GeneID:5713025;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533370.1;transl_table=11
NC_009952.1	RefSeq	gene	2150586	2151734	.	+	.	ID=gene2064;Name=Dshi_2031;Dbxref=GeneID:5713026;gbkey=Gene;locus_tag=Dshi_2031
NC_009952.1	RefSeq	CDS	2150586	2151734	.	+	0	ID=cds2025;Name=YP_001533371.1;Parent=gene2064;Note=PFAM: PF03480%3B TIGRFAM: TIGR01409%3B COG: COG1638 - TRAP-type C4-dicarboxylate transport system%2C periplasmic component%3B SWISSPROT P37735: C4-dicarboxylate-binding periplasmic protein %5BPrecursor%5D;Dbxref=Genbank:YP_001533371.1,GeneID:5713026;gbkey=CDS;product=putative TRAP-type C4-dicarboxylate transport sytem periplasmic protein;protein_id=YP_001533371.1;transl_table=11
NC_009952.1	RefSeq	gene	2151852	2152367	.	+	.	ID=gene2065;Name=Dshi_2032;Dbxref=GeneID:5713027;gbkey=Gene;locus_tag=Dshi_2032
NC_009952.1	RefSeq	CDS	2151852	2152367	.	+	0	ID=cds2026;Name=YP_001533372.1;Parent=gene2065;Note=COG: COG3090 - TRAP-type C4-dicarboxylate transport system%2C small permease component%3B PFAM: PF04290%3B PROSITE: PS00430;Dbxref=Genbank:YP_001533372.1,GeneID:5713027;gbkey=CDS;product=TRAP transporter permease;protein_id=YP_001533372.1;transl_table=11
NC_009952.1	RefSeq	gene	2152380	2153708	.	+	.	ID=gene2066;Name=Dshi_2033;Dbxref=GeneID:5713028;gbkey=Gene;locus_tag=Dshi_2033
NC_009952.1	RefSeq	CDS	2152380	2153708	.	+	0	ID=cds2027;Name=YP_001533373.1;Parent=gene2066;Note=PFAM: PF06808-DctM-like transporters%3B TIGRFAM: TIGR00786 TRAP transporter%2C DctM subunit%3B COG: COG1593 - TRAP-type C4-dicarboxylate transport system%2C large permease component;Dbxref=Genbank:YP_001533373.1,GeneID:5713028;gbkey=CDS;product=TRAP dicarboxylate transporter subunit DctM;protein_id=YP_001533373.1;transl_table=11
NC_009952.1	RefSeq	gene	2153718	2155025	.	+	.	ID=gene2067;Name=hisD2;Dbxref=GeneID:5713029;gbkey=Gene;gene=hisD2;locus_tag=Dshi_2034
NC_009952.1	RefSeq	CDS	2153718	2155025	.	+	0	ID=cds2028;Name=YP_001533374.1;Parent=gene2067;Note=catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis%3B functions as a dimer;Dbxref=Genbank:YP_001533374.1,GeneID:5713029;gbkey=CDS;gene=hisD2;product=histidinol dehydrogenase;protein_id=YP_001533374.1;transl_table=11
NC_009952.1	RefSeq	gene	2155018	2155782	.	+	.	ID=gene2068;Name=hisD2;Dbxref=GeneID:5713030;gbkey=Gene;gene=hisD2;locus_tag=Dshi_2035
NC_009952.1	RefSeq	CDS	2155018	2155782	.	+	0	ID=cds2029;Name=YP_001533375.1;Parent=gene2068;Note=COG: COG1028 - Dehydrogenases with different specificities %28related to short-chain alcohol dehydrogenases%29%3B PFAM: PF00106%3B PROSITE: PS00061%3B PRINTS: PR00080%2C PR00081;Dbxref=Genbank:YP_001533375.1,GeneID:5713030;gbkey=CDS;product=putative gluconate 5-dehydrogenase;protein_id=YP_001533375.1;transl_table=11
NC_009952.1	RefSeq	gene	2155779	2156762	.	+	.	ID=gene2069;Name=Dshi_2036;Dbxref=GeneID:5713031;gbkey=Gene;locus_tag=Dshi_2036
NC_009952.1	RefSeq	CDS	2155779	2156762	.	+	0	ID=cds2030;Name=YP_001533376.1;Parent=gene2069;Note=PFAM: PF00107%2C PF08240%3B SUPERFAMILY: SSF50129%3B PANTHER: PTHR11695: Alcohol dehydrogenase related;Dbxref=Genbank:YP_001533376.1,GeneID:5713031;gbkey=CDS;product=zinc-containing alcohol dehydrogenase;protein_id=YP_001533376.1;transl_table=11
NC_009952.1	RefSeq	gene	2156778	2157068	.	+	.	ID=gene2070;Name=Dshi_2037;Dbxref=GeneID:5713032;gbkey=Gene;locus_tag=Dshi_2037
NC_009952.1	RefSeq	CDS	2156778	2157068	.	+	0	ID=cds2031;Name=YP_001533377.1;Parent=gene2070;Note=SWISSPROT P42604: Altronate hydrolase%3B similar to altronate hydrolase;Dbxref=Genbank:YP_001533377.1,GeneID:5713032;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533377.1;transl_table=11
NC_009952.1	RefSeq	gene	2157081	2158262	.	+	.	ID=gene2071;Name=Dshi_2038;Dbxref=GeneID:5713033;gbkey=Gene;locus_tag=Dshi_2038
NC_009952.1	RefSeq	CDS	2157081	2158262	.	+	0	ID=cds2032;Name=YP_001533378.1;Parent=gene2071;Note=COG: COG2721 - Altronate dehydratase%3B PFAM: PF04295;Dbxref=Genbank:YP_001533378.1,GeneID:5713033;gbkey=CDS;product=putative altronate hydrolase;protein_id=YP_001533378.1;transl_table=11
NC_009952.1	RefSeq	gene	2158316	2159335	.	+	.	ID=gene2072;Name=Dshi_2039;Dbxref=GeneID:5713034;gbkey=Gene;locus_tag=Dshi_2039
NC_009952.1	RefSeq	CDS	2158316	2159335	.	+	0	ID=cds2033;Name=YP_001533379.1;Parent=gene2072;Note=COG: COG2055 - Malate%2FL-lactate dehydrogenases%3B PFAM: PF02615%3B SUPERFAMILY: SSF89733 L-sulfolactate dehydrogenase-like;Dbxref=Genbank:YP_001533379.1,GeneID:5713034;gbkey=CDS;product=malate%2FL-lactate dehydrogenase family protein;protein_id=YP_001533379.1;transl_table=11
NC_009952.1	RefSeq	gene	2159382	2159789	.	+	.	ID=gene2073;Name=Dshi_2040;Dbxref=GeneID:5713035;gbkey=Gene;locus_tag=Dshi_2040
NC_009952.1	RefSeq	CDS	2159382	2159789	.	+	0	ID=cds2034;Name=YP_001533380.1;Parent=gene2073;Note=SWISSPROT P37903: Universal stress protein F%3B PFAM: PF00582 Universal stress protein family%3B PRINTS: PR01438%3B SUPERFAMILY: Adenine nucleotide alpha hydrolases-like%3B COG: COG0589 - Universal stress protein UspA and related nucleotide-binding proteins;Dbxref=Genbank:YP_001533380.1,GeneID:5713035;gbkey=CDS;product=putative universal stress protein;protein_id=YP_001533380.1;transl_table=11
NC_009952.1	RefSeq	gene	2159773	2160468	.	-	.	ID=gene2074;Name=Dshi_5005;Dbxref=GeneID:8130633;gbkey=Gene;locus_tag=Dshi_5005
NC_009952.1	RefSeq	CDS	2159773	2160468	.	-	0	ID=cds2035;Name=YP_003422330.1;Parent=gene2074;Dbxref=Genbank:YP_003422330.1,GeneID:8130633;gbkey=CDS;product=hypothetical protein;protein_id=YP_003422330.1;transl_table=11
NC_009952.1	RefSeq	gene	2160601	2161983	.	-	.	ID=gene2075;Name=tpa;Dbxref=GeneID:5713037;gbkey=Gene;gene=tpa;locus_tag=Dshi_2042
NC_009952.1	RefSeq	CDS	2160601	2161983	.	-	0	ID=cds2036;Name=YP_001533381.1;Parent=gene2075;Note=SWISSPROT Q9APM5: Taurine--pyruvate aminotransferase%3B COG: COG0161 - Adenosylmethionine-8-amino-7-oxononanoate aminotransferase%3B PFAM: PF00202%3B PROSITE: PS00600;Dbxref=Genbank:YP_001533381.1,GeneID:5713037;gbkey=CDS;gene=tpa;product=taurin--pyruvate aminotransferase;protein_id=YP_001533381.1;transl_table=11
NC_009952.1	RefSeq	gene	2162251	2162490	.	+	.	ID=gene2076;Name=Dshi_2043;Dbxref=GeneID:5713038;gbkey=Gene;locus_tag=Dshi_2043
NC_009952.1	RefSeq	CDS	2162251	2162490	.	+	0	ID=cds2037;Name=YP_001533382.1;Parent=gene2076;Dbxref=Genbank:YP_001533382.1,GeneID:5713038;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533382.1;transl_table=11
NC_009952.1	RefSeq	gene	2162631	2164097	.	+	.	ID=gene2077;Name=Dshi_2044;Dbxref=GeneID:5713039;gbkey=Gene;locus_tag=Dshi_2044
NC_009952.1	RefSeq	CDS	2162631	2164097	.	+	0	ID=cds2038;Name=YP_001533383.1;Parent=gene2077;Note=SWISSPROT P94426: HTH-type transcriptional regulatory protein gabR%3B COG: COG1167 - Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain %28MocR family%29 and their eukaryotic orthologs%3B PFAM: PF00392%2C PF00155%3B SMART: SM00345%3B PROSITE: PS50949;Dbxref=Genbank:YP_001533383.1,GeneID:5713039;gbkey=CDS;product=HTH-type transcriptional regulator;protein_id=YP_001533383.1;transl_table=11
NC_009952.1	RefSeq	gene	2164196	2165974	.	+	.	ID=gene2078;Name=xsc;Dbxref=GeneID:5713040;gbkey=Gene;gene=xsc;locus_tag=Dshi_2045
NC_009952.1	RefSeq	CDS	2164196	2165974	.	+	0	ID=cds2039;Name=YP_001533384.1;Parent=gene2078;Note=catalyzes the formation of acetyl phosphate and sulfite from 2-sulfoacetaldehyde%3B is active when grown on taurine as a sole carbon source;Dbxref=Genbank:YP_001533384.1,GeneID:5713040;gbkey=CDS;gene=xsc;product=sulfoacetaldehyde acetyltransferase;protein_id=YP_001533384.1;transl_table=11
NC_009952.1	RefSeq	gene	2165978	2167135	.	+	.	ID=gene2079;Name=Dshi_5006;Dbxref=GeneID:5713041;gbkey=Gene;locus_tag=Dshi_5006
NC_009952.1	RefSeq	CDS	2165978	2167135	.	+	0	ID=cds2040;Name=YP_003422331.1;Parent=gene2079;Dbxref=Genbank:YP_003422331.1,GeneID:5713041;gbkey=CDS;product=hypothetical protein;protein_id=YP_003422331.1;transl_table=11
NC_009952.1	RefSeq	gene	2167136	2167762	.	-	.	ID=gene2080;Name=Dshi_2047;Dbxref=GeneID:5713042;gbkey=Gene;locus_tag=Dshi_2047
NC_009952.1	RefSeq	CDS	2167136	2167762	.	-	0	ID=cds2041;Name=YP_001533385.1;Parent=gene2080;Note=PROSITE: PS51257%3B COG: COG3218 - ABC-type uncharacterized transport system%2C auxiliary component%3B related to membrane lipoprotein;Dbxref=Genbank:YP_001533385.1,GeneID:5713042;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533385.1;transl_table=11
NC_009952.1	RefSeq	gene	2167769	2169508	.	-	.	ID=gene2081;Name=Dshi_2048;Dbxref=GeneID:5713043;gbkey=Gene;locus_tag=Dshi_2048
NC_009952.1	RefSeq	CDS	2167769	2169508	.	-	0	ID=cds2042;Name=YP_001533386.1;Parent=gene2081;Note=PFAM: PF02470%3B COG: COG1463 - ABC-type transport system involved in resistance to organic solvents%2C periplasmic component;Dbxref=Genbank:YP_001533386.1,GeneID:5713043;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533386.1;transl_table=11
NC_009952.1	RefSeq	gene	2169530	2170309	.	-	.	ID=gene2082;Name=Dshi_2049;Dbxref=GeneID:5713044;gbkey=Gene;locus_tag=Dshi_2049
NC_009952.1	RefSeq	CDS	2169530	2170309	.	-	0	ID=cds2043;Name=YP_001533387.1;Parent=gene2082;Note=COG: COG1127 - ABC-type transport system involved in resistance to organic solvents%2C ATPase component%3B PFAM: PF00005%3B PROSITE: PS00211%2C PS50893%3B SMART: SM00382;Dbxref=Genbank:YP_001533387.1,GeneID:5713044;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=YP_001533387.1;transl_table=11
NC_009952.1	RefSeq	gene	2170309	2171463	.	-	.	ID=gene2083;Name=Dshi_2050;Dbxref=GeneID:5713045;gbkey=Gene;locus_tag=Dshi_2050
NC_009952.1	RefSeq	CDS	2170309	2171463	.	-	0	ID=cds2044;Name=YP_001533388.1;Parent=gene2083;Note=TIGRFAM: TIGR00056 conserved hypothetical integral membrane protein%3B COG: COG0767 - ABC-type transport system involved in resistance to organic solvents%2C permease component%3B PROSITE: PS50801%3B PFAM: PF02405%3B SUPERFAMILY: SSF52091;Dbxref=Genbank:YP_001533388.1,GeneID:5713045;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533388.1;transl_table=11
NC_009952.1	RefSeq	gene	2171569	2172045	.	-	.	ID=gene2084;Name=Dshi_2051;Dbxref=GeneID:5713046;gbkey=Gene;locus_tag=Dshi_2051
NC_009952.1	RefSeq	CDS	2171569	2172045	.	-	0	ID=cds2045;Name=YP_001533389.1;Parent=gene2084;Dbxref=Genbank:YP_001533389.1,GeneID:5713046;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533389.1;transl_table=11
NC_009952.1	RefSeq	gene	2172042	2172206	.	-	.	ID=gene2085;Name=Dshi_2052;Dbxref=GeneID:5713047;gbkey=Gene;locus_tag=Dshi_2052
NC_009952.1	RefSeq	CDS	2172042	2172206	.	-	0	ID=cds2046;Name=YP_001533390.1;Parent=gene2085;Note=COG: COG4256%3B similar to hemin uptake protein;Dbxref=Genbank:YP_001533390.1,GeneID:5713047;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533390.1;transl_table=11
NC_009952.1	RefSeq	gene	2172986	2173456	.	+	.	ID=gene2086;Name=Dshi_2053;Dbxref=GeneID:5713048;gbkey=Gene;locus_tag=Dshi_2053
NC_009952.1	RefSeq	CDS	2172986	2173456	.	+	0	ID=cds2047;Name=YP_001533391.1;Parent=gene2086;Dbxref=Genbank:YP_001533391.1,GeneID:5713048;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533391.1;transl_table=11
NC_009952.1	RefSeq	gene	2173618	2174742	.	-	.	ID=gene2087;Name=Dshi_2054;Dbxref=GeneID:5713049;gbkey=Gene;locus_tag=Dshi_2054
NC_009952.1	RefSeq	CDS	2173618	2174742	.	-	0	ID=cds2048;Name=YP_001533392.1;Parent=gene2087;Note=COG: COG0123 - Deacetylases%2C including yeast histone deacetylase and acetoin utilization protein%3B PFAM: PF00850%3B PRINTS PR01270;Dbxref=Genbank:YP_001533392.1,GeneID:5713049;gbkey=CDS;product=histone deacetylase family protein;protein_id=YP_001533392.1;transl_table=11
NC_009952.1	RefSeq	gene	2174739	2175272	.	-	.	ID=gene2088;Name=Dshi_2055;Dbxref=GeneID:5713050;gbkey=Gene;locus_tag=Dshi_2055
NC_009952.1	RefSeq	CDS	2174739	2175272	.	-	0	ID=cds2049;Name=YP_001533393.1;Parent=gene2088;Note=COG: COG0386 - Glutathione peroxidase%3B SWISSPROT P99097: Glutathione peroxidase homolog bsaA%3B PFAM: PF00255%3B PIR: PIRSF000303%3B PROSITE: PS00460%3B PRINTS: PR01011%3B Gene3D: G3DSA:3.40.30.10;Dbxref=Genbank:YP_001533393.1,GeneID:5713050;gbkey=CDS;product=putative glutathione peroxidase;protein_id=YP_001533393.1;transl_table=11
NC_009952.1	RefSeq	gene	2175483	2175962	.	+	.	ID=gene2089;Name=Dshi_2056;Dbxref=GeneID:5713051;gbkey=Gene;locus_tag=Dshi_2056
NC_009952.1	RefSeq	CDS	2175483	2175962	.	+	0	ID=cds2050;Name=YP_001533394.1;Parent=gene2089;Note=PFAM: PF00293%3B PRINTS: PR00502%3B Gene3D: G3DSA:3.90.79.10;Dbxref=Genbank:YP_001533394.1,GeneID:5713051;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533394.1;transl_table=11
NC_009952.1	RefSeq	gene	2176088	2176564	.	+	.	ID=gene2090;Name=Dshi_2057;Dbxref=GeneID:5713052;gbkey=Gene;locus_tag=Dshi_2057
NC_009952.1	RefSeq	CDS	2176088	2176564	.	+	0	ID=cds2051;Name=YP_001533395.1;Parent=gene2090;Note=COG: COG5319 - Uncharacterized protein conserved in bacteria%3B PFAM: PF06676-Protein of unknown function %28DUF1178%29;Dbxref=Genbank:YP_001533395.1,GeneID:5713052;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533395.1;transl_table=11
NC_009952.1	RefSeq	gene	2176569	2177234	.	+	.	ID=gene2091;Name=Dshi_2058;Dbxref=GeneID:5713053;gbkey=Gene;locus_tag=Dshi_2058
NC_009952.1	RefSeq	CDS	2176569	2177234	.	+	0	ID=cds2052;Name=YP_001533396.1;Parent=gene2091;Note=COG: COG1028 - Dehydrogenases with different specificities %28related to short-chain alcohol dehydrogenases%29;Dbxref=Genbank:YP_001533396.1,GeneID:5713053;gbkey=CDS;product=short-chain dehydrogenase;protein_id=YP_001533396.1;transl_table=11
NC_009952.1	RefSeq	gene	2177212	2177808	.	+	.	ID=gene2092;Name=Dshi_2059;Dbxref=GeneID:5713054;gbkey=Gene;locus_tag=Dshi_2059
NC_009952.1	RefSeq	CDS	2177212	2177808	.	+	0	ID=cds2053;Name=YP_001533397.1;Parent=gene2092;Note=COG: COG0645 - Predicted kinase%3B similar to adenylyl sulfate kinase;Dbxref=Genbank:YP_001533397.1,GeneID:5713054;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533397.1;transl_table=11
NC_009952.1	RefSeq	gene	2178310	2181102	.	+	.	ID=gene2093;Name=acnB;Dbxref=GeneID:5713055;gbkey=Gene;gene=acnB;locus_tag=Dshi_2060
NC_009952.1	RefSeq	CDS	2178310	2181102	.	+	0	ID=cds2054;Name=YP_001533398.1;Parent=gene2093;Note=catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate;Dbxref=Genbank:YP_001533398.1,GeneID:5713055;gbkey=CDS;gene=acnB;product=bifunctional aconitate hydratase 2%2F2-methylisocitrate dehydratase;protein_id=YP_001533398.1;transl_table=11
NC_009952.1	RefSeq	gene	2181413	2182651	.	+	.	ID=gene2094;Name=lysC;Dbxref=GeneID:5713056;gbkey=Gene;gene=lysC;locus_tag=Dshi_2061
NC_009952.1	RefSeq	CDS	2181413	2182651	.	+	0	ID=cds2055;Name=YP_001533399.1;Parent=gene2094;Note=SWISSPROT P26512: Aspartokinase%3B TIGRFAM: TIGR00656 aspartate kinase%2C monofunctional class%2C TIGR00657 aspartate kinase%3B COG: COG0527 - Aspartokinases;Dbxref=Genbank:YP_001533399.1,GeneID:5713056;gbkey=CDS;gene=lysC;product=aspartokinase;protein_id=YP_001533399.1;transl_table=11
NC_009952.1	RefSeq	gene	2182811	2185054	.	+	.	ID=gene2095;Name=ptsI;Dbxref=GeneID:5713057;gbkey=Gene;gene=ptsI;locus_tag=Dshi_2062
NC_009952.1	RefSeq	CDS	2182811	2185054	.	+	0	ID=cds2056;Name=YP_001533400.1;Parent=gene2095;Note=SWISSPROT P08839: Phosphoenolpyruvate-protein phosphotransferase%3B TIGRFAM: TIGR01417 phosphoenolpyruvate-protein phosphotransferase%3B COG: COG3605 - Signal transduction protein containing GAF and PtsI domains%3B PFAM: pfam02896%2C pfam05524%2C pfam00391%2C pfam01590%3B SMART: SM00065;Dbxref=Genbank:YP_001533400.1,GeneID:5713057;gbkey=CDS;gene=ptsI;product=phosphoenolpyruvate-protein phosphotransferase;protein_id=YP_001533400.1;transl_table=11
NC_009952.1	RefSeq	gene	2185051	2185806	.	-	.	ID=gene2096;Name=ptsI;Dbxref=GeneID:5713058;gbkey=Gene;gene=ptsI;locus_tag=Dshi_2063
NC_009952.1	RefSeq	CDS	2185051	2185806	.	-	0	ID=cds2057;Name=YP_001533401.1;Parent=gene2096;Note=PFAM: PF00092%3B SMART: SM00327%3B PROSITE: PS50234%3B PRINTS: PR00453%3B related to von Willebrand factor type A;Dbxref=Genbank:YP_001533401.1,GeneID:5713058;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533401.1;transl_table=11
NC_009952.1	RefSeq	gene	2185839	2186339	.	-	.	ID=gene2097;Name=Dshi_2064;Dbxref=GeneID:5713059;gbkey=Gene;locus_tag=Dshi_2064
NC_009952.1	RefSeq	CDS	2185839	2186339	.	-	0	ID=cds2058;Name=YP_001533402.1;Parent=gene2097;Note=COG: COG3153 - Predicted acetyltransferase%3B PFAM: PF00583%3B PROSITE: PS51186%3B related to acetyltransferase%2C GNAT family;Dbxref=Genbank:YP_001533402.1,GeneID:5713059;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533402.1;transl_table=11
NC_009952.1	RefSeq	gene	2186415	2187020	.	+	.	ID=gene2098;Name=Dshi_2065;Dbxref=GeneID:5713060;gbkey=Gene;locus_tag=Dshi_2065
NC_009952.1	RefSeq	CDS	2186415	2187020	.	+	0	ID=cds2059;Name=YP_001533403.1;Parent=gene2098;Note=COG: COG1853 - Conserved protein%2Fdomain typically associated with flavoprotein oxygenases%2C DIM6%2FNTAB family%3B SUPERFAMILY: FMN-binding split barrel%3B Gene3D: Electron Transport%2C Fmn-binding Protein%3B Chain A;Dbxref=Genbank:YP_001533403.1,GeneID:5713060;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533403.1;transl_table=11
NC_009952.1	RefSeq	gene	2187026	2187301	.	-	.	ID=gene2099;Name=Dshi_2066;Dbxref=GeneID:5713061;gbkey=Gene;locus_tag=Dshi_2066
NC_009952.1	RefSeq	CDS	2187026	2187301	.	-	0	ID=cds2060;Name=YP_001533404.1;Parent=gene2099;Dbxref=Genbank:YP_001533404.1,GeneID:5713061;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533404.1;transl_table=11
NC_009952.1	RefSeq	gene	2187413	2189017	.	-	.	ID=gene2100;Name=Dshi_2067;Dbxref=GeneID:5713062;gbkey=Gene;locus_tag=Dshi_2067
NC_009952.1	RefSeq	CDS	2187413	2189017	.	-	0	ID=cds2061;Name=YP_001533405.1;Parent=gene2100;Note=SWISSPROT P0AFR2: Putative sulfate transporter ychM%3B COG: COG0659 - Sulfate permease and related transporters %28MFS superfamily%29%3B PFAM: PF01740%2C PF00916%3B PROSITE: PS50801;Dbxref=Genbank:YP_001533405.1,GeneID:5713062;gbkey=CDS;product=sulfate transporter;protein_id=YP_001533405.1;transl_table=11
NC_009952.1	RefSeq	gene	2189203	2190072	.	+	.	ID=gene2101;Name=Dshi_2068;Dbxref=GeneID:5713063;gbkey=Gene;locus_tag=Dshi_2068
NC_009952.1	RefSeq	CDS	2189203	2190072	.	+	0	ID=cds2062;Name=YP_001533406.1;Parent=gene2101;Note=Catalyzes the reversible phosphorolysis of 5%27-deoxy-5%27- methylthioadenosine %28MTA%29 to adenine and 5-methylthio-D-ribose-1- phosphate;Dbxref=Genbank:YP_001533406.1,GeneID:5713063;gbkey=CDS;product=5%27-methylthioadenosine phosphorylase;protein_id=YP_001533406.1;transl_table=11
NC_009952.1	RefSeq	gene	2190225	2190515	.	+	.	ID=gene2102;Name=Dshi_2069;Dbxref=GeneID:5713064;gbkey=Gene;locus_tag=Dshi_2069
NC_009952.1	RefSeq	CDS	2190225	2190515	.	+	0	ID=cds2063;Name=YP_001533407.1;Parent=gene2102;Note=COG: COG4321 - Uncharacterized protein related to arylsulfate sulfotransferase involved in siderophore biosynthesis;Dbxref=Genbank:YP_001533407.1,GeneID:5713064;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533407.1;transl_table=11
NC_009952.1	RefSeq	gene	2190630	2191025	.	+	.	ID=gene2103;Name=Dshi_2070;Dbxref=GeneID:5713065;gbkey=Gene;locus_tag=Dshi_2070
NC_009952.1	RefSeq	CDS	2190630	2191025	.	+	0	ID=cds2064;Name=YP_001533408.1;Parent=gene2103;Note=TIGRFAM: TIGR00068%3B COG: COG0346 - Lactoylglutathione lyase and related lyases%3B PFAM: PF00903-Glyoxalase%2FBleomycin resistance protein%2FDioxygenase superfamily%3B similar to Lactoylglutathione lyase;Dbxref=Genbank:YP_001533408.1,GeneID:5713065;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533408.1;transl_table=11
NC_009952.1	RefSeq	gene	2191066	2191590	.	+	.	ID=gene2104;Name=Dshi_2071;Dbxref=GeneID:5713066;gbkey=Gene;locus_tag=Dshi_2071
NC_009952.1	RefSeq	CDS	2191066	2191590	.	+	0	ID=cds2065;Name=YP_001533409.1;Parent=gene2104;Dbxref=Genbank:YP_001533409.1,GeneID:5713066;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533409.1;transl_table=11
NC_009952.1	RefSeq	gene	2191605	2193176	.	+	.	ID=gene2105;Name=Dshi_2072;Dbxref=GeneID:5713067;gbkey=Gene;locus_tag=Dshi_2072
NC_009952.1	RefSeq	CDS	2191605	2193176	.	+	0	ID=cds2066;Name=YP_001533410.1;Parent=gene2105;Note=COG: COG2303 - Choline dehydrogenase and related flavoproteins%3B PFAM: PF00732;Dbxref=Genbank:YP_001533410.1,GeneID:5713067;gbkey=CDS;product=putative gluconate 2-dehydrogenase flavoprotein;protein_id=YP_001533410.1;transl_table=11
NC_009952.1	RefSeq	gene	2193621	2194550	.	-	.	ID=gene2106;Name=Dshi_2073;Dbxref=GeneID:5713068;gbkey=Gene;locus_tag=Dshi_2073
NC_009952.1	RefSeq	CDS	2193621	2194550	.	-	0	ID=cds2067;Name=YP_001533411.1;Parent=gene2106;Note=SUPERFAMILY: SSF51101;Dbxref=Genbank:YP_001533411.1,GeneID:5713068;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533411.1;transl_table=11
NC_009952.1	RefSeq	gene	2194887	2195426	.	+	.	ID=gene2107;Name=apt;Dbxref=GeneID:5713069;gbkey=Gene;gene=apt;locus_tag=Dshi_2074
NC_009952.1	RefSeq	CDS	2194887	2195426	.	+	0	ID=cds2068;Name=YP_001533412.1;Parent=gene2107;Note=catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis;Dbxref=Genbank:YP_001533412.1,GeneID:5713069;gbkey=CDS;gene=apt;product=adenine phosphoribosyltransferase;protein_id=YP_001533412.1;transl_table=11
NC_009952.1	RefSeq	gene	2195526	2195978	.	+	.	ID=gene2108;Name=Dshi_2075;Dbxref=GeneID:5713070;gbkey=Gene;locus_tag=Dshi_2075
NC_009952.1	RefSeq	CDS	2195526	2195978	.	+	0	ID=cds2069;Name=YP_001533413.1;Parent=gene2108;Note=COG: COG3439 - Uncharacterized conserved protein%3B PFAM: PF03625%3B SUPERFAMILY: TT1751-like;Dbxref=Genbank:YP_001533413.1,GeneID:5713070;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533413.1;transl_table=11
NC_009952.1	RefSeq	gene	2196168	2197586	.	-	.	ID=gene2109;Name=Dshi_2076;Dbxref=GeneID:5713071;gbkey=Gene;locus_tag=Dshi_2076
NC_009952.1	RefSeq	CDS	2196168	2197586	.	-	0	ID=cds2070;Name=YP_001533414.1;Parent=gene2109;Note=COG: COG0277 - FAD%2FFMN-containing dehydrogenases%3B PFAM: PF02913%2C PF01565;Dbxref=Genbank:YP_001533414.1,GeneID:5713071;gbkey=CDS;product=FAD-linked oxidase;protein_id=YP_001533414.1;transl_table=11
NC_009952.1	RefSeq	gene	2197642	2198481	.	-	.	ID=gene2110;Name=Dshi_2077;Dbxref=GeneID:5713072;gbkey=Gene;locus_tag=Dshi_2077
NC_009952.1	RefSeq	CDS	2197642	2198481	.	-	0	ID=cds2071;Name=YP_001533415.1;Parent=gene2110;Note=COG: COG2220 - Predicted Zn-dependent hydrolases of the beta-lactamase fold%3B related to metal-dependent hydrolase%2Foxidoreductase;Dbxref=Genbank:YP_001533415.1,GeneID:5713072;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533415.1;transl_table=11
NC_009952.1	RefSeq	gene	2198730	2199473	.	+	.	ID=gene2111;Name=tpiA;Dbxref=GeneID:5713073;gbkey=Gene;gene=tpiA;locus_tag=Dshi_2078
NC_009952.1	RefSeq	CDS	2198730	2199473	.	+	0	ID=cds2072;Name=YP_001533416.1;Parent=gene2111;Note=TIGRFAM: TIGR00419 triosephosphate isomerase%3B COG: COG0149%3B PFAM: PF00121%3B PROSITE: PS00171;Dbxref=Genbank:YP_001533416.1,GeneID:5713073;gbkey=CDS;gene=tpiA;product=triosephosphate isomerase;protein_id=YP_001533416.1;transl_table=11
NC_009952.1	RefSeq	gene	2199565	2200521	.	-	.	ID=gene2112;Name=Dshi_2079;Dbxref=GeneID:5713074;gbkey=Gene;locus_tag=Dshi_2079
NC_009952.1	RefSeq	CDS	2199565	2200521	.	-	0	ID=cds2073;Name=YP_001533417.1;Parent=gene2112;Note=COG: COG0583 - Transcriptional regulator%3B PFAM: PF00126%2C PF03466%3B PROSITE: PS50931%3B SUPERFAMILY: SSF53850%2C SSF46785%3B lysR family;Dbxref=Genbank:YP_001533417.1,GeneID:5713074;gbkey=CDS;product=HTH-type transcriptional regulator;protein_id=YP_001533417.1;transl_table=11
NC_009952.1	RefSeq	gene	2200594	2201463	.	+	.	ID=gene2113;Name=metF;Dbxref=GeneID:5713075;gbkey=Gene;gene=metF;locus_tag=Dshi_2080
NC_009952.1	RefSeq	CDS	2200594	2201463	.	+	0	ID=cds2074;Name=YP_001533418.1;Parent=gene2113;Note=SWISSPROT P0AEZ1: 5%2C10-methylenetetrahydrofolate reductase%3B PFAM: PF02219- Methylenetetrahydrofolate reductase%3B TIGRFAM: TIGR00676 5%2C10-methylenetetrahydrofolate reductase%2C prokaryotic form%3B COG: COG0685 - 5%2C10-methylenetetrahydrofolate reductase;Dbxref=Genbank:YP_001533418.1,GeneID:5713075;gbkey=CDS;gene=metF;product=5%2C10-methylenetetrahydrofolate reductase;protein_id=YP_001533418.1;transl_table=11
NC_009952.1	RefSeq	gene	2201530	2202114	.	-	.	ID=gene2114;Name=Dshi_2081;Dbxref=GeneID:5713076;gbkey=Gene;locus_tag=Dshi_2081
NC_009952.1	RefSeq	CDS	2201530	2202114	.	-	0	ID=cds2075;Name=YP_001533419.1;Parent=gene2114;Note=COG: COG2863 - Cytochrome c553%3B PROSITE: PS51007%3B Gene3D: G3DSA:1.10.760.10 %3B SUPERFAMILY: SSF46626;Dbxref=Genbank:YP_001533419.1,GeneID:5713076;gbkey=CDS;product=putative cytochrome c;protein_id=YP_001533419.1;transl_table=11
NC_009952.1	RefSeq	gene	2202111	2203370	.	-	.	ID=gene2115;Name=Dshi_2082;Dbxref=GeneID:5713077;gbkey=Gene;locus_tag=Dshi_2082
NC_009952.1	RefSeq	CDS	2202111	2203370	.	-	0	ID=cds2076;Name=YP_001533420.1;Parent=gene2115;Note=COG: COG2133 - Glucose%2Fsorbosone dehydrogenases%3B SUPERFAMILY: Soluble quinoprotein glucose dehydrogenase%3B Gene3D: G3DSA:2.120.10.30;Dbxref=Genbank:YP_001533420.1,GeneID:5713077;gbkey=CDS;product=putative sorbosone%2Fglucose dehydrogenase;protein_id=YP_001533420.1;transl_table=11
NC_009952.1	RefSeq	gene	2203522	2203989	.	+	.	ID=gene2116;Name=Dshi_2083;Dbxref=GeneID:5713078;gbkey=Gene;locus_tag=Dshi_2083
NC_009952.1	RefSeq	CDS	2203522	2203989	.	+	0	ID=cds2077;Name=YP_001533421.1;Parent=gene2116;Note=COG: COG2050 - Uncharacterized protein%2C possibly involved in aromatic compounds catabolism%3B PFAM: PF03061%3B TIGRFAM: TIGR00369%3B related to thioesterase;Dbxref=Genbank:YP_001533421.1,GeneID:5713078;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533421.1;transl_table=11
NC_009952.1	RefSeq	gene	2204080	2205153	.	-	.	ID=gene2117;Name=Dshi_2084;Dbxref=GeneID:5713079;gbkey=Gene;locus_tag=Dshi_2084
NC_009952.1	RefSeq	CDS	2204080	2205153	.	-	0	ID=cds2078;Name=YP_001533422.1;Parent=gene2117;Note=COG: COG3673 - Uncharacterized conserved protein%3B PROSITE: PS00120;Dbxref=Genbank:YP_001533422.1,GeneID:5713079;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533422.1;transl_table=11
NC_009952.1	RefSeq	gene	2205559	2206308	.	+	.	ID=gene2118;Name=Dshi_2085;Dbxref=GeneID:5713080;gbkey=Gene;locus_tag=Dshi_2085
NC_009952.1	RefSeq	CDS	2205559	2206308	.	+	0	ID=cds2079;Name=YP_001533423.1;Parent=gene2118;Note=TIGRFAM: TIGR02595;Dbxref=Genbank:YP_001533423.1,GeneID:5713080;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533423.1;transl_table=11
NC_009952.1	RefSeq	gene	2206881	2209178	.	-	.	ID=gene2119;Name=coxL3;Dbxref=GeneID:5713081;gbkey=Gene;gene=coxL3;locus_tag=Dshi_2086
NC_009952.1	RefSeq	CDS	2206881	2209178	.	-	0	ID=cds2080;Name=YP_001533424.1;Parent=gene2119;Note=SWISSPROT P19919: Carbon monoxide dehydrogenase large chain%3B COG: COG1529 - Aerobic-type carbon monoxide dehydrogenase%2C large subunit CoxL%2FCutL homologs%3B PFAM: pfam02738%2C pfam01315;Dbxref=Genbank:YP_001533424.1,GeneID:5713081;gbkey=CDS;gene=coxL3;product=carbon monoxide dehydrogenase;protein_id=YP_001533424.1;transl_table=11
NC_009952.1	RefSeq	gene	2209300	2212413	.	+	.	ID=gene2120;Name=valS;Dbxref=GeneID:5713082;gbkey=Gene;gene=valS;locus_tag=Dshi_2087
NC_009952.1	RefSeq	CDS	2209300	2212413	.	+	0	ID=cds2081;Name=YP_001533425.1;Parent=gene2120;Note=valine--tRNA ligase%3B ValRS%3B converts valine ATP and tRNA%28Val%29 to AMP PPi and valyl-tRNA%28Val%29%3B class-I aminoacyl-tRNA synthetase type 1 subfamily%3B has a posttransfer editing process to hydrolyze mischarged Thr-tRNA%28Val%29 which is done by the editing domain;Dbxref=Genbank:YP_001533425.1,GeneID:5713082;gbkey=CDS;gene=valS;product=valyl-tRNA synthetase;protein_id=YP_001533425.1;transl_table=11
NC_009952.1	RefSeq	gene	2212787	2213905	.	+	.	ID=gene2121;Name=Dshi_2088;Dbxref=GeneID:5713083;gbkey=Gene;locus_tag=Dshi_2088
NC_009952.1	RefSeq	CDS	2212787	2213905	.	+	0	ID=cds2082;Name=YP_001533426.1;Parent=gene2121;Note=catalyzes the formation of histidinol phosphate and 2-oxoglutarate from glutamate and imidazole acetol-phosphate;Dbxref=Genbank:YP_001533426.1,GeneID:5713083;gbkey=CDS;product=histidinol-phosphate aminotransferase;protein_id=YP_001533426.1;transl_table=11
NC_009952.1	RefSeq	gene	2213993	2214208	.	+	.	ID=gene2122;Name=Dshi_2089;Dbxref=GeneID:5713084;gbkey=Gene;locus_tag=Dshi_2089
NC_009952.1	RefSeq	CDS	2213993	2214208	.	+	0	ID=cds2083;Name=YP_001533427.1;Parent=gene2122;Dbxref=Genbank:YP_001533427.1,GeneID:5713084;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533427.1;transl_table=11
NC_009952.1	RefSeq	gene	2214205	2215461	.	-	.	ID=gene2123;Name=Dshi_2090;Dbxref=GeneID:5713085;gbkey=Gene;locus_tag=Dshi_2090
NC_009952.1	RefSeq	CDS	2214205	2215461	.	-	0	ID=cds2084;Name=YP_001533428.1;Parent=gene2123;Note=COG: COG0075 - Serine-pyruvate aminotransferase%2Farchaeal aspartate aminotransferase%3B PFAM: PF00266;Dbxref=Genbank:YP_001533428.1,GeneID:5713085;gbkey=CDS;product=putative serine--glyoxylate aminotransferase;protein_id=YP_001533428.1;transl_table=11
NC_009952.1	RefSeq	gene	2215514	2216209	.	-	.	ID=gene2124;Name=Dshi_2091;Dbxref=GeneID:5713086;gbkey=Gene;locus_tag=Dshi_2091
NC_009952.1	RefSeq	CDS	2215514	2216209	.	-	0	ID=cds2085;Name=YP_001533429.1;Parent=gene2124;Note=SUPERFAMILY: SSF53448-Nucleotide-diphospho-sugar transferases%3B PFAM: PF00535-Glycosyl transferase family 2%3B COG: COG0463 - Glycosyltransferases involved in cell wall biogenesis;Dbxref=Genbank:YP_001533429.1,GeneID:5713086;gbkey=CDS;product=putative glycosyltransferase;protein_id=YP_001533429.1;transl_table=11
NC_009952.1	RefSeq	gene	2216299	2217084	.	+	.	ID=gene2125;Name=Dshi_2092;Dbxref=GeneID:5713087;gbkey=Gene;locus_tag=Dshi_2092
NC_009952.1	RefSeq	CDS	2216299	2217084	.	+	0	ID=cds2086;Name=YP_001533430.1;Parent=gene2125;Note=COG: COG0354 - Predicted aminomethyltransferase related to GcvT%3B PFAM: PF08669%2C PF01571%3B similar to aminomethyltransferase;Dbxref=Genbank:YP_001533430.1,GeneID:5713087;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533430.1;transl_table=11
NC_009952.1	RefSeq	gene	2217100	2217546	.	-	.	ID=gene2126;Name=Dshi_2093;Dbxref=GeneID:5713088;gbkey=Gene;locus_tag=Dshi_2093
NC_009952.1	RefSeq	CDS	2217100	2217546	.	-	0	ID=cds2087;Name=YP_001533431.1;Parent=gene2126;Dbxref=Genbank:YP_001533431.1,GeneID:5713088;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533431.1;transl_table=11
NC_009952.1	RefSeq	gene	2217877	2218518	.	-	.	ID=gene2127;Name=efp;Dbxref=GeneID:5713089;gbkey=Gene;gene=efp;locus_tag=Dshi_2094
NC_009952.1	RefSeq	CDS	2217877	2218518	.	-	0	ID=cds2088;Name=YP_001533432.1;Parent=gene2127;Note=Involved in peptide bond synthesis%3B alters the affinity of the ribosome for aminoacyl-tRNA;Dbxref=Genbank:YP_001533432.1,GeneID:5713089;gbkey=CDS;gene=efp;product=elongation factor P;protein_id=YP_001533432.1;transl_table=11
NC_009952.1	RefSeq	gene	2218654	2218974	.	+	.	ID=gene2128;Name=Dshi_2095;Dbxref=GeneID:5713090;gbkey=Gene;locus_tag=Dshi_2095
NC_009952.1	RefSeq	CDS	2218654	2218974	.	+	0	ID=cds2089;Name=YP_001533433.1;Parent=gene2128;Dbxref=Genbank:YP_001533433.1,GeneID:5713090;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533433.1;transl_table=11
NC_009952.1	RefSeq	gene	2219140	2220600	.	+	.	ID=gene2129;Name=cobQ;Dbxref=GeneID:5713091;gbkey=Gene;gene=cobQ;locus_tag=Dshi_2096
NC_009952.1	RefSeq	CDS	2219140	2220600	.	+	0	ID=cds2090;Name=YP_001533434.1;Parent=gene2129;Note=catalyzes amidations at positions B%2C D%2C E%2C and G on adenosylcobyrinic A%2CC-diamide. NH%282%29 groups are provided by glutamine%2C and one molecule of ATP is hydrogenolyzed for each amidation;Dbxref=Genbank:YP_001533434.1,GeneID:5713091;gbkey=CDS;gene=cobQ;product=cobyric acid synthase;protein_id=YP_001533434.1;transl_table=11
NC_009952.1	RefSeq	gene	2220619	2221347	.	-	.	ID=gene2130;Name=Dshi_2097;Dbxref=GeneID:5713092;gbkey=Gene;locus_tag=Dshi_2097
NC_009952.1	RefSeq	CDS	2220619	2221347	.	-	0	ID=cds2091;Name=YP_001533435.1;Parent=gene2130;Dbxref=Genbank:YP_001533435.1,GeneID:5713092;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533435.1;transl_table=11
NC_009952.1	RefSeq	gene	2221467	2222837	.	-	.	ID=gene2131;Name=Dshi_2098;Dbxref=GeneID:5713093;gbkey=Gene;locus_tag=Dshi_2098
NC_009952.1	RefSeq	CDS	2221467	2222837	.	-	0	ID=cds2092;Name=YP_001533436.1;Parent=gene2131;Note=SWISSPROT P02930: Outer membrane protein tolC %5BPrecursor%5D%3B TIGRFAM: TIGR01844 type I secretion outer membrane protein%2C TolC family%3B COG: COG1538 - Outer membrane protein%3B PFAM: PF02321;Dbxref=Genbank:YP_001533436.1,GeneID:5713093;gbkey=CDS;product=putative outer membrane protein tolC;protein_id=YP_001533436.1;transl_table=11
NC_009952.1	RefSeq	gene	2222900	2223553	.	-	.	ID=gene2132;Name=Dshi_2099;Dbxref=GeneID:5713094;gbkey=Gene;locus_tag=Dshi_2099
NC_009952.1	RefSeq	CDS	2222900	2223553	.	-	0	ID=cds2093;Name=YP_001533437.1;Parent=gene2132;Note=TIGRFAM: TIGR00080 protein-L-isoaspartate%28D-aspartate%29 O-methyltransferase%3B COG: COG2518 - Protein-L-isoaspartate carboxylmethyltransferase%3B PFAM: PF01135%3B pcm;Dbxref=Genbank:YP_001533437.1,GeneID:5713094;gbkey=CDS;product=putative Protein-L-isoaspartate O-methyltransferase;protein_id=YP_001533437.1;transl_table=11
NC_009952.1	RefSeq	gene	2223733	2223806	.	+	.	ID=gene2133;Name=Dshi_6040;Dbxref=GeneID:5713095;gbkey=Gene;locus_tag=Dshi_6040
NC_009952.1	RefSeq	tRNA	2223733	2223806	.	+	.	ID=rna39;Parent=gene2133;Dbxref=GeneID:5713095;codons=13;gbkey=tRNA;product=tRNA-Cys
NC_009952.1	RefSeq	exon	2223733	2223806	.	+	.	ID=id43;Parent=rna39;Dbxref=GeneID:5713095;codons=13;gbkey=tRNA;product=tRNA-Cys
NC_009952.1	RefSeq	gene	2223872	2225461	.	+	.	ID=gene2134;Name=Dshi_2100;Dbxref=GeneID:5713096;gbkey=Gene;locus_tag=Dshi_2100
NC_009952.1	RefSeq	CDS	2223872	2225461	.	+	0	ID=cds2094;Name=YP_001533438.1;Parent=gene2134;Note=PFAM: PF00589%3B SUPERFAMILY: SSF56349%3B Gene3D: G3DSA:1.10.443.10%3B COG: COG4974 - Site-specific recombinase XerD;Dbxref=Genbank:YP_001533438.1,GeneID:5713096;gbkey=CDS;product=putative integrase;protein_id=YP_001533438.1;transl_table=11
NC_009952.1	RefSeq	gene	2225466	2228060	.	-	.	ID=gene2135;Name=Dshi_2101;Dbxref=GeneID:5713097;gbkey=Gene;locus_tag=Dshi_2101
NC_009952.1	RefSeq	CDS	2225466	2228060	.	-	0	ID=cds2095;Name=YP_001533439.1;Parent=gene2135;Note=SUPERFAMILY: SSF52540;Dbxref=Genbank:YP_001533439.1,GeneID:5713097;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533439.1;transl_table=11
NC_009952.1	RefSeq	gene	2228064	2229521	.	-	.	ID=gene2136;Name=Dshi_2102;Dbxref=GeneID:5713098;gbkey=Gene;locus_tag=Dshi_2102
NC_009952.1	RefSeq	CDS	2228064	2229521	.	-	0	ID=cds2096;Name=YP_001533440.1;Parent=gene2136;Note=PFAM: PF01555%3B related to DNA methylase N4%2FN6;Dbxref=Genbank:YP_001533440.1,GeneID:5713098;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533440.1;transl_table=11
NC_009952.1	RefSeq	gene	2229626	2229892	.	+	.	ID=gene2137;Name=Dshi_2103;Dbxref=GeneID:5713099;gbkey=Gene;locus_tag=Dshi_2103
NC_009952.1	RefSeq	CDS	2229626	2229892	.	+	0	ID=cds2097;Name=YP_001533441.1;Parent=gene2137;Note=PFAM: PF01527-Transposase;Dbxref=Genbank:YP_001533441.1,GeneID:5713099;gbkey=CDS;product=putative transposase;protein_id=YP_001533441.1;transl_table=11
NC_009952.1	RefSeq	gene	2229916	2230737	.	+	.	ID=gene2138;Name=Dshi_2104;Dbxref=GeneID:5713100;gbkey=Gene;locus_tag=Dshi_2104
NC_009952.1	RefSeq	CDS	2229916	2230737	.	+	0	ID=cds2098;Name=YP_001533442.1;Parent=gene2138;Note=COG: COG2801 - Transposase and inactivated derivatives%3B PFAM: PF00665%3B PROSITE: PS50994%3B SUPERFAMILY: SSF53098;Dbxref=Genbank:YP_001533442.1,GeneID:5713100;gbkey=CDS;product=putative integrase;protein_id=YP_001533442.1;transl_table=11
NC_009952.1	RefSeq	gene	2230732	2231412	.	-	.	ID=gene2139;Name=Dshi_2105;Dbxref=GeneID:5713101;gbkey=Gene;locus_tag=Dshi_2105
NC_009952.1	RefSeq	CDS	2230732	2231412	.	-	0	ID=cds2099;Name=YP_001533443.1;Parent=gene2139;Note=PFAM: PF01555%3B PROSITE: PS00092%3B SUPERFAMILY: SSF53335%3B related to DNA methylase N6;Dbxref=Genbank:YP_001533443.1,GeneID:5713101;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533443.1;transl_table=11
NC_009952.1	RefSeq	gene	2231752	2232006	.	-	.	ID=gene2140;Name=Dshi_2106;Dbxref=GeneID:5713102;gbkey=Gene;locus_tag=Dshi_2106
NC_009952.1	RefSeq	CDS	2231752	2232006	.	-	0	ID=cds2100;Name=YP_001533444.1;Parent=gene2140;Note=PFAM: PF01381%3B PROSITE: PS50943%3B SMART: SM00530%3B SUPERFAMILY: SSF47413%3B Gene3D: G3DSA:1.10.260.40%3B related to HTH-type lambda repressor;Dbxref=Genbank:YP_001533444.1,GeneID:5713102;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533444.1;transl_table=11
NC_009952.1	RefSeq	gene	2232133	2232831	.	+	.	ID=gene2141;Name=Dshi_2107;Dbxref=GeneID:5713103;gbkey=Gene;locus_tag=Dshi_2107
NC_009952.1	RefSeq	CDS	2232133	2232831	.	+	0	ID=cds2101;Name=YP_001533445.1;Parent=gene2141;Dbxref=Genbank:YP_001533445.1,GeneID:5713103;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533445.1;transl_table=11
NC_009952.1	RefSeq	gene	2234212	2236719	.	-	.	ID=gene2142;Name=Dshi_2108;Dbxref=GeneID:5713104;gbkey=Gene;locus_tag=Dshi_2108
NC_009952.1	RefSeq	CDS	2234212	2236719	.	-	0	ID=cds2102;Name=YP_001533446.1;Parent=gene2142;Note=COG: COG0025 - NhaP-type Na%2B%2FH%2B and K%2B%2FH%2B antiporters%3B PFAM: PF00027%2C PF00999%3B SMART: SM00100%3B PROSITE: PS50042%3B related to sodium%2Fhydrogen exchanger;Dbxref=Genbank:YP_001533446.1,GeneID:5713104;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533446.1;transl_table=11
NC_009952.1	RefSeq	gene	2236892	2238043	.	-	.	ID=gene2143;Name=Dshi_2109;Dbxref=GeneID:5713105;gbkey=Gene;locus_tag=Dshi_2109
NC_009952.1	RefSeq	CDS	2236892	2238043	.	-	0	ID=cds2103;Name=YP_001533447.1;Parent=gene2143;Note=COG: COG3616 - Predicted amino acid aldolase or racemase%3B PFAM: PF01168%3B related to alanine racemase;Dbxref=Genbank:YP_001533447.1,GeneID:5713105;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533447.1;transl_table=11
NC_009952.1	RefSeq	gene	2238185	2239102	.	+	.	ID=gene2144;Name=Dshi_2110;Dbxref=GeneID:5713106;gbkey=Gene;locus_tag=Dshi_2110
NC_009952.1	RefSeq	CDS	2238185	2239102	.	+	0	ID=cds2104;Name=YP_001533448.1;Parent=gene2144;Note=PFAM: PF04227- Indigoidine synthase A like protein%3B SUPERFAMILY SSF110581: Indigoidine synthase A-like;Dbxref=Genbank:YP_001533448.1,GeneID:5713106;gbkey=CDS;product=indigoidine synthase A-like protein;protein_id=YP_001533448.1;transl_table=11
NC_009952.1	RefSeq	gene	2239132	2240037	.	-	.	ID=gene2145;Name=purU;Dbxref=GeneID:5713107;gbkey=Gene;gene=purU;locus_tag=Dshi_2111
NC_009952.1	RefSeq	CDS	2239132	2240037	.	-	0	ID=cds2105;Name=YP_001533449.1;Parent=gene2145;Note=SWISSPROT P37051: Formyltetrahydrofolate deformylase%3B TIGRFAM: TIGR00655%3B COG: COG0788%3B PFAM: PF00551%2C PF01842%3B PRINTS: PR01575%3B PIR: PIRSF036480- formyltetrahydrofolate deformylase;Dbxref=Genbank:YP_001533449.1,GeneID:5713107;gbkey=CDS;gene=purU;product=formyltetrahydrofolate deformylase;protein_id=YP_001533449.1;transl_table=11
NC_009952.1	RefSeq	gene	2240003	2241415	.	-	.	ID=gene2146;Name=purU;Dbxref=GeneID:5713108;gbkey=Gene;gene=purU;locus_tag=Dshi_5008
NC_009952.1	RefSeq	CDS	2240003	2241415	.	-	0	ID=cds2106;Name=YP_003422332.1;Parent=gene2146;Dbxref=Genbank:YP_003422332.1,GeneID:5713108;gbkey=CDS;product=L-serine dehydratase;protein_id=YP_003422332.1;transl_table=11
NC_009952.1	RefSeq	gene	2241420	2242694	.	-	.	ID=gene2147;Name=glyA;Dbxref=GeneID:5713109;gbkey=Gene;gene=glyA;locus_tag=Dshi_2113
NC_009952.1	RefSeq	CDS	2241420	2242694	.	-	0	ID=cds2107;Name=YP_001533450.1;Parent=gene2147;Note=catalyzes the reaction of glycine with 5%2C10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate;Dbxref=Genbank:YP_001533450.1,GeneID:5713109;gbkey=CDS;gene=glyA;product=serine hydroxymethyltransferase;protein_id=YP_001533450.1;transl_table=11
NC_009952.1	RefSeq	gene	2242777	2243307	.	-	.	ID=gene2148;Name=Dshi_2114;Dbxref=GeneID:5713110;gbkey=Gene;locus_tag=Dshi_2114
NC_009952.1	RefSeq	CDS	2242777	2243307	.	-	0	ID=cds2108;Name=YP_001533451.1;Parent=gene2148;Note=SWISSPROT O87386: Sarcosine oxidase subunit alpha%3B TIGRFAM: TIGR01375 sarcosine oxidase%2C gamma subunit family%2C heterotetrameric form%3B COG: COG4583 - Sarcosine oxidase gamma subunit%3B PFAM: PF04268: SUPERFAMILY: SSF103025;Dbxref=Genbank:YP_001533451.1,GeneID:5713110;gbkey=CDS;product=putative sarcosine oxidase subunit gamma;protein_id=YP_001533451.1;transl_table=11
NC_009952.1	RefSeq	gene	2243321	2246323	.	-	.	ID=gene2149;Name=soxA2;Dbxref=GeneID:5713111;gbkey=Gene;gene=soxA2;locus_tag=Dshi_2115
NC_009952.1	RefSeq	CDS	2243321	2246323	.	-	0	ID=cds2109;Name=YP_001533452.1;Parent=gene2149;Note=SWISSPROT Q46337: Sarcosine oxidase subunit alpha%3B TIGRFAM: TIGR01372 sarcosine oxidase%2C alpha subunit family%2C heterotetrameric form%3B COG: COG0404 - Glycine cleavage system T protein %28aminomethyltransferase%29%3B PFAM: PF01571%2C PF08669%2C PF07992;Dbxref=Genbank:YP_001533452.1,GeneID:5713111;gbkey=CDS;gene=soxA2;product=sarcosine oxidase subunit alpha;protein_id=YP_001533452.1;transl_table=11
NC_009952.1	RefSeq	gene	2246320	2246619	.	-	.	ID=gene2150;Name=soxA2;Dbxref=GeneID:5713112;gbkey=Gene;gene=soxA2;locus_tag=Dshi_2116
NC_009952.1	RefSeq	CDS	2246320	2246619	.	-	0	ID=cds2110;Name=YP_001533453.1;Parent=gene2150;Note=SWISSPROT Q46336: Sarcosine oxidase subunit delta%3B PFAM: Sarcosine oxidase%2C delta subunit family%3B TIGRFAM: TIGR01374%3B COG: COG4311 - Sarcosine oxidase delta subunit%3B delta subunit %28soxD%29;Dbxref=Genbank:YP_001533453.1,GeneID:5713112;gbkey=CDS;product=putative sarcosine oxidase;protein_id=YP_001533453.1;transl_table=11
NC_009952.1	RefSeq	gene	2246632	2247885	.	-	.	ID=gene2151;Name=soxB;Dbxref=GeneID:5713113;gbkey=Gene;gene=soxB;locus_tag=Dshi_2117
NC_009952.1	RefSeq	CDS	2246632	2247885	.	-	0	ID=cds2111;Name=YP_001533454.1;Parent=gene2151;Note=SWISSPROT P40875: sarcosine oxidase subunit beta%3B PFAM: PF01266-FAD dependent oxidoreductase%3B TIGRFAM: TIGR01373-Sarcosine oxidase%2C beta subunit%2C heterotetrameric%3B COG: COG0665 - Glycine%2FD-amino acid oxidases %28deaminating%29;Dbxref=Genbank:YP_001533454.1,GeneID:5713113;gbkey=CDS;gene=soxB;product=sarcosine oxidase subunit beta;protein_id=YP_001533454.1;transl_table=11
NC_009952.1	RefSeq	gene	2248012	2248998	.	+	.	ID=gene2152;Name=Dshi_2118;Dbxref=GeneID:5713114;gbkey=Gene;locus_tag=Dshi_2118
NC_009952.1	RefSeq	CDS	2248012	2248998	.	+	0	ID=cds2112;Name=YP_001533455.1;Parent=gene2152;Note=COG: COG4977 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain%3B PFAM: PF00165%2C PF01965%3B SMART: SM00342%3B PROSITE: PS01124%3B SUPERFAMILY: SSF46689%3B Gene3D: G3DSA:1.10.10.60%3B AraC family;Dbxref=Genbank:YP_001533455.1,GeneID:5713114;gbkey=CDS;product=HTH-type transcriptional regulator;protein_id=YP_001533455.1;transl_table=11
NC_009952.1	RefSeq	gene	2249037	2250611	.	-	.	ID=gene2153;Name=Dshi_2119;Dbxref=GeneID:5713115;gbkey=Gene;locus_tag=Dshi_2119
NC_009952.1	RefSeq	CDS	2249037	2250611	.	-	0	ID=cds2113;Name=YP_001533456.1;Parent=gene2153;Note=TIGRFAM: TIGR00842 - choline%2Fcarnitine%2Fbetaine transport%3B COG: COG1292 - Choline-glycine betaine transporter%3B PFAM: PF02028-BCCT family transporter;Dbxref=Genbank:YP_001533456.1,GeneID:5713115;gbkey=CDS;product=betaine%2Fcarnitine%2Fcholine transporter family protein;protein_id=YP_001533456.1;transl_table=11
NC_009952.1	RefSeq	gene	2250796	2251926	.	-	.	ID=gene2154;Name=potA2;Dbxref=GeneID:5713116;gbkey=Gene;gene=potA2;locus_tag=Dshi_2120
NC_009952.1	RefSeq	CDS	2250796	2251926	.	-	0	ID=cds2114;Name=YP_001533457.1;Parent=gene2154;Note=SWISSPROT P69874: Spermidine%2Fputrescine import ATP-binding protein potA%3B COG: COG3842-ABC-type spermidine%2Fputrescine transport systems%2C ATPase components%3B PFAM: PF00005%2C PF08402%3B PROSITE: PS00211%2C PS50893%3B SMART: SM00382;Dbxref=Genbank:YP_001533457.1,GeneID:5713116;gbkey=CDS;gene=potA2;product=spermidine%2Fputrescine import ATP-binding protein;protein_id=YP_001533457.1;transl_table=11
NC_009952.1	RefSeq	gene	2251923	2252720	.	-	.	ID=gene2155;Name=potA2;Dbxref=GeneID:5713117;gbkey=Gene;gene=potA2;locus_tag=Dshi_2121
NC_009952.1	RefSeq	CDS	2251923	2252720	.	-	0	ID=cds2115;Name=YP_001533458.1;Parent=gene2155;Note=SWISSPROT P0AFK6: Spermidine%2Fputrescine transport system permease protein potC%3B COG: COG1177 - ABC-type spermidine%2Fputrescine transport system%2C permease component II%3B PFAM: PF00528%3B PROSITE: PS50928;Dbxref=Genbank:YP_001533458.1,GeneID:5713117;gbkey=CDS;product=putative spermidine%2Fputrescine transport system permease;protein_id=YP_001533458.1;transl_table=11
NC_009952.1	RefSeq	gene	2252722	2253567	.	-	.	ID=gene2156;Name=Dshi_2122;Dbxref=GeneID:5713118;gbkey=Gene;locus_tag=Dshi_2122
NC_009952.1	RefSeq	CDS	2252722	2253567	.	-	0	ID=cds2116;Name=YP_001533459.1;Parent=gene2156;Note=SWISSPROT P0AFK4: Spermidine%2Fputrescine transport system permease protein potB%3B COG: COG1176-ABC-type spermidine%2Fputrescine transport system%2C permease component I%3B PFAM: pfam00528%3B PROSITE: PS50928;Dbxref=Genbank:YP_001533459.1,GeneID:5713118;gbkey=CDS;product=putative spermidine%2Fputrescine transport system permease;protein_id=YP_001533459.1;transl_table=11
NC_009952.1	RefSeq	gene	2253645	2254763	.	-	.	ID=gene2157;Name=Dshi_2123;Dbxref=GeneID:5713119;gbkey=Gene;locus_tag=Dshi_2123
NC_009952.1	RefSeq	CDS	2253645	2254763	.	-	0	ID=cds2117;Name=YP_001533460.1;Parent=gene2157;Note=COG: COG0687 - Spermidine%2Fputrescine-binding periplasmic protein%3B PRINTS: PR00909%3B SWISSPROT P0AFK9: Spermidine%2Fputrescine-binding periplasmic protein %5BPrecursor%5D%3B similar to spermidine%2Fputrescine binding periplasmic protein %28potD%29;Dbxref=Genbank:YP_001533460.1,GeneID:5713119;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533460.1;transl_table=11
NC_009952.1	RefSeq	gene	2254814	2255617	.	-	.	ID=gene2158;Name=Dshi_2124;Dbxref=GeneID:5713120;gbkey=Gene;locus_tag=Dshi_2124
NC_009952.1	RefSeq	CDS	2254814	2255617	.	-	0	ID=cds2118;Name=YP_001533461.1;Parent=gene2158;Note=PFAM: PF02633%3B COG: COG1402 - Uncharacterized protein%2C putative amidase%3B related to creatininase;Dbxref=Genbank:YP_001533461.1,GeneID:5713120;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533461.1;transl_table=11
NC_009952.1	RefSeq	gene	2255710	2256606	.	+	.	ID=gene2159;Name=Dshi_2125;Dbxref=GeneID:5713121;gbkey=Gene;locus_tag=Dshi_2125
NC_009952.1	RefSeq	CDS	2255710	2256606	.	+	0	ID=cds2119;Name=YP_001533462.1;Parent=gene2159;Note=COG: COG0583 - Transcriptional regulator%3B PFAM: PF00126%2C PF03466%3B PROSITE: PS50931%3B SUPERFAMILY: SSF53850%2C SSF46785%3B lysR family;Dbxref=Genbank:YP_001533462.1,GeneID:5713121;gbkey=CDS;product=HTH-type transcriptional regulator;protein_id=YP_001533462.1;transl_table=11
NC_009952.1	RefSeq	gene	2256727	2257959	.	+	.	ID=gene2160;Name=Dshi_2126;Dbxref=GeneID:5713122;gbkey=Gene;locus_tag=Dshi_2126
NC_009952.1	RefSeq	CDS	2256727	2257959	.	+	0	ID=cds2120;Name=YP_001533463.1;Parent=gene2160;Note=SWISSPROT P38488: Creatinase%3B COG: COG0006 - Xaa-Pro aminopeptidase%3B PFAM: PF00557%2C PF01321;Dbxref=Genbank:YP_001533463.1,GeneID:5713122;gbkey=CDS;product=creatinase;protein_id=YP_001533463.1;transl_table=11
NC_009952.1	RefSeq	gene	2258167	2258787	.	+	.	ID=gene2161;Name=Dshi_2127;Dbxref=GeneID:5713123;gbkey=Gene;locus_tag=Dshi_2127
NC_009952.1	RefSeq	CDS	2258167	2258787	.	+	0	ID=cds2121;Name=YP_001533464.1;Parent=gene2161;Note=SUPERFAMILY: SSF51182;Dbxref=Genbank:YP_001533464.1,GeneID:5713123;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533464.1;transl_table=11
NC_009952.1	RefSeq	gene	2258972	2259460	.	+	.	ID=gene2162;Name=Dshi_2128;Dbxref=GeneID:5713124;gbkey=Gene;locus_tag=Dshi_2128
NC_009952.1	RefSeq	CDS	2258972	2259460	.	+	0	ID=cds2122;Name=YP_001533465.1;Parent=gene2162;Note=PFAM PF04403: Paraquat-inducible protein A%3B similar to paraquat inducible protein A;Dbxref=Genbank:YP_001533465.1,GeneID:5713124;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533465.1;transl_table=11
NC_009952.1	RefSeq	gene	2259500	2260867	.	+	.	ID=gene2163;Name=Dshi_2129;Dbxref=GeneID:5713125;gbkey=Gene;locus_tag=Dshi_2129
NC_009952.1	RefSeq	CDS	2259500	2260867	.	+	0	ID=cds2123;Name=YP_001533466.1;Parent=gene2163;Note=Sms%3B stabilizes the strand-invasion intermediate during the DNA repair%3B involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents;Dbxref=Genbank:YP_001533466.1,GeneID:5713125;gbkey=CDS;product=DNA repair protein RadA;protein_id=YP_001533466.1;transl_table=11
NC_009952.1	RefSeq	gene	2260890	2261444	.	+	.	ID=gene2164;Name=Dshi_2130;Dbxref=GeneID:5713126;gbkey=Gene;locus_tag=Dshi_2130
NC_009952.1	RefSeq	CDS	2260890	2261444	.	+	0	ID=cds2124;Name=YP_001533467.1;Parent=gene2164;Note=COG: COG1286 - Uncharacterized membrane protein%2C required for colicin V production%3B PFAM: PF02674-Colicin V production protein;Dbxref=Genbank:YP_001533467.1,GeneID:5713126;gbkey=CDS;product=putative colicin V production protein;protein_id=YP_001533467.1;transl_table=11
NC_009952.1	RefSeq	gene	2261760	2262230	.	+	.	ID=gene2165;Name=Dshi_2131;Dbxref=GeneID:5713127;gbkey=Gene;locus_tag=Dshi_2131
NC_009952.1	RefSeq	CDS	2261760	2262230	.	+	0	ID=cds2125;Name=YP_001533468.1;Parent=gene2165;Note=no database hits%2C no shine dalgarno. Pseudogene%3F%3F;Dbxref=Genbank:YP_001533468.1,GeneID:5713127;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533468.1;transl_table=11
NC_009952.1	RefSeq	gene	2262378	2263904	.	+	.	ID=gene2166;Name=purF;Dbxref=GeneID:5713128;gbkey=Gene;gene=purF;locus_tag=Dshi_2132
NC_009952.1	RefSeq	CDS	2262378	2263904	.	+	0	ID=cds2126;Name=YP_001533469.1;Parent=gene2166;Note=Catalyzes first step of the de novo purine nucleotide biosynthetic pathway;Dbxref=Genbank:YP_001533469.1,GeneID:5713128;gbkey=CDS;gene=purF;product=amidophosphoribosyltransferase;protein_id=YP_001533469.1;transl_table=11
NC_009952.1	RefSeq	gene	2263901	2264419	.	+	.	ID=gene2167;Name=purF;Dbxref=GeneID:5713129;gbkey=Gene;gene=purF;locus_tag=Dshi_2133
NC_009952.1	RefSeq	CDS	2263901	2264419	.	+	0	ID=cds2127;Name=YP_001533470.1;Parent=gene2167;Note=COG: COG3543 - Uncharacterized conserved protein%3B PFAM: PF06935-Protein of unknown function;Dbxref=Genbank:YP_001533470.1,GeneID:5713129;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533470.1;transl_table=11
NC_009952.1	RefSeq	gene	2264629	2265222	.	-	.	ID=gene2168;Name=Dshi_2134;Dbxref=GeneID:5713130;gbkey=Gene;locus_tag=Dshi_2134
NC_009952.1	RefSeq	CDS	2264629	2265222	.	-	0	ID=cds2128;Name=YP_001533471.1;Parent=gene2168;Note=COG: COG1268 - Uncharacterized conserved protein%3B PFAM: PF02632-BioY family%3B PIR: PIRSF016661- uncharacterized biotin biosynthesis protein%2C BioY type;Dbxref=Genbank:YP_001533471.1,GeneID:5713130;gbkey=CDS;product=putative BioY protein;protein_id=YP_001533471.1;transl_table=11
NC_009952.1	RefSeq	gene	2265345	2266010	.	+	.	ID=gene2169;Name=Dshi_2135;Dbxref=GeneID:5713131;gbkey=Gene;locus_tag=Dshi_2135
NC_009952.1	RefSeq	CDS	2265345	2266010	.	+	0	ID=cds2129;Name=YP_001533472.1;Parent=gene2169;Note=COG: COG4221 - Short-chain alcohol dehydrogenase of unknown specificity%3B PFAM: PF00106%3B PRINTS: PR00081;Dbxref=Genbank:YP_001533472.1,GeneID:5713131;gbkey=CDS;product=short-chain dehydrogenase;protein_id=YP_001533472.1;transl_table=11
NC_009952.1	RefSeq	gene	2266110	2266895	.	+	.	ID=gene2170;Name=surE;Dbxref=GeneID:5713132;gbkey=Gene;gene=surE;locus_tag=Dshi_2136
NC_009952.1	RefSeq	CDS	2266110	2266895	.	+	0	ID=cds2130;Name=YP_001533473.1;Parent=gene2170;Note=catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate;Dbxref=Genbank:YP_001533473.1,GeneID:5713132;gbkey=CDS;gene=surE;product=stationary phase survival protein SurE;protein_id=YP_001533473.1;transl_table=11
NC_009952.1	RefSeq	gene	2266892	2267542	.	+	.	ID=gene2171;Name=pcm;Dbxref=GeneID:5713133;gbkey=Gene;gene=pcm;locus_tag=Dshi_2137
NC_009952.1	RefSeq	CDS	2266892	2267542	.	+	0	ID=cds2131;Name=YP_001533474.1;Parent=gene2171;Note=TIGRFAM: TIGR00080 protein-L-isoaspartate%28D-aspartate%29 O-methyltransferase%3B COG: COG2518 - Protein-L-isoaspartate carboxylmethyltransferase%3B PFAM: PF01135%3B PROSITE: PS01279;Dbxref=Genbank:YP_001533474.1,GeneID:5713133;gbkey=CDS;gene=pcm;product=protein-L-isoaspartate O-methyltransferase;protein_id=YP_001533474.1;transl_table=11
NC_009952.1	RefSeq	gene	2267574	2268803	.	+	.	ID=gene2172;Name=Dshi_2138;Dbxref=GeneID:5713134;gbkey=Gene;locus_tag=Dshi_2138
NC_009952.1	RefSeq	CDS	2267574	2268803	.	+	0	ID=cds2132;Name=YP_001533475.1;Parent=gene2172;Note=COG: COG0739 - Membrane proteins related to metalloendopeptidases%3B PFAM: PF01476%2C PF01551%3B SMART: SM00257%3B SUPERFAMILY: SSF51261%3B related to metalloprotease;Dbxref=Genbank:YP_001533475.1,GeneID:5713134;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533475.1;transl_table=11
NC_009952.1	RefSeq	gene	2268877	2269770	.	-	.	ID=gene2173;Name=Dshi_2139;Dbxref=GeneID:5713135;gbkey=Gene;locus_tag=Dshi_2139
NC_009952.1	RefSeq	CDS	2268877	2269770	.	-	0	ID=cds2133;Name=YP_001533476.1;Parent=gene2173;Note=SWISSPROT P31125: Probable amino-acid metabolite efflux pump%3B P0ABT8: Uncharacterized inner membrane transporter yiJE%3B PFAM: PF00892%3B SUPERFAMILY: SSF103481%3B related to multidrug resistance efflux transporter;Dbxref=Genbank:YP_001533476.1,GeneID:5713135;gbkey=CDS;product=integral membrane protein;protein_id=YP_001533476.1;transl_table=11
NC_009952.1	RefSeq	gene	2269849	2271162	.	+	.	ID=gene2174;Name=Dshi_2140;Dbxref=GeneID:5713136;gbkey=Gene;locus_tag=Dshi_2140
NC_009952.1	RefSeq	CDS	2269849	2271162	.	+	0	ID=cds2134;Name=YP_001533477.1;Parent=gene2174;Note=PFAM: PF00999%3B COG: COG0025 - NhaP-type Na%2B%2FH%2B and K%2B%2FH%2B antiporters%3B related to sodium%2Fhydrogen exchanger;Dbxref=Genbank:YP_001533477.1,GeneID:5713136;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533477.1;transl_table=11
NC_009952.1	RefSeq	gene	2271249	2271968	.	+	.	ID=gene2175;Name=Dshi_2141;Dbxref=GeneID:5713137;gbkey=Gene;locus_tag=Dshi_2141
NC_009952.1	RefSeq	CDS	2271249	2271968	.	+	0	ID=cds2135;Name=YP_001533478.1;Parent=gene2175;Note=PFAM: PF04391;Dbxref=Genbank:YP_001533478.1,GeneID:5713137;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533478.1;transl_table=11
NC_009952.1	RefSeq	gene	2272078	2272491	.	+	.	ID=gene2176;Name=Dshi_2142;Dbxref=GeneID:5713138;gbkey=Gene;locus_tag=Dshi_2142
NC_009952.1	RefSeq	CDS	2272078	2272491	.	+	0	ID=cds2136;Name=YP_001533479.1;Parent=gene2176;Note=SWISSPROT P0A9A9: Ferric uptake regulation protein %28fur%29%3B COG: COG0735 - Fe2%2B%2FZn2%2B uptake regulation proteins%3B PFAM: PF01475%3B SUPERFAMILY: SSF46785;Dbxref=Genbank:YP_001533479.1,GeneID:5713138;gbkey=CDS;product=putative ferric uptake regulation protein;protein_id=YP_001533479.1;transl_table=11
NC_009952.1	RefSeq	gene	2272576	2273487	.	+	.	ID=gene2177;Name=Dshi_2143;Dbxref=GeneID:5713139;gbkey=Gene;locus_tag=Dshi_2143
NC_009952.1	RefSeq	CDS	2272576	2273487	.	+	0	ID=cds2137;Name=YP_001533480.1;Parent=gene2177;Note=COG: COG1741 - Pirin-related protein%3B PFAM: PF02678%2C PF05726%3B SUPERFAMILY: SSF51182;Dbxref=Genbank:YP_001533480.1,GeneID:5713139;gbkey=CDS;product=pirin-like protein;protein_id=YP_001533480.1;transl_table=11
NC_009952.1	RefSeq	gene	2273605	2274639	.	-	.	ID=gene2178;Name=Dshi_2144;Dbxref=GeneID:5713140;gbkey=Gene;locus_tag=Dshi_2144
NC_009952.1	RefSeq	CDS	2273605	2274639	.	-	0	ID=cds2138;Name=YP_001533481.1;Parent=gene2178;Note=SWISSPROT P75823: Low specificity L-threonine aldolase%3B O07051: L-allo-threonine aldolase COG: COG2008 - Threonine aldolase%3B PFAM: PF01212%3B SUPERFAMILY: SSF53383;Dbxref=Genbank:YP_001533481.1,GeneID:5713140;gbkey=CDS;product=threonine aldolase;protein_id=YP_001533481.1;transl_table=11
NC_009952.1	RefSeq	gene	2274839	2276113	.	+	.	ID=gene2179;Name=eno;Dbxref=GeneID:5713141;gbkey=Gene;gene=eno;locus_tag=Dshi_2145
NC_009952.1	RefSeq	CDS	2274839	2276113	.	+	0	ID=cds2139;Name=YP_001533482.1;Parent=gene2179;Note=enolase%3B catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis;Dbxref=Genbank:YP_001533482.1,GeneID:5713141;gbkey=CDS;gene=eno;product=phosphopyruvate hydratase;protein_id=YP_001533482.1;transl_table=11
NC_009952.1	RefSeq	gene	2276189	2276938	.	-	.	ID=gene2180;Name=Dshi_2146;Dbxref=GeneID:5713142;gbkey=Gene;locus_tag=Dshi_2146
NC_009952.1	RefSeq	CDS	2276189	2276938	.	-	0	ID=cds2140;Name=YP_001533483.1;Parent=gene2180;Note=PFAM: PF05239%3B related to PRC-barrel;Dbxref=Genbank:YP_001533483.1,GeneID:5713142;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533483.1;transl_table=11
NC_009952.1	RefSeq	gene	2277080	2277499	.	-	.	ID=gene2181;Name=Dshi_2147;Dbxref=GeneID:5713143;gbkey=Gene;locus_tag=Dshi_2147
NC_009952.1	RefSeq	CDS	2277080	2277499	.	-	0	ID=cds2141;Name=YP_001533484.1;Parent=gene2181;Dbxref=Genbank:YP_001533484.1,GeneID:5713143;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533484.1;transl_table=11
NC_009952.1	RefSeq	gene	2277653	2278543	.	+	.	ID=gene2182;Name=Dshi_2148;Dbxref=GeneID:5713144;gbkey=Gene;locus_tag=Dshi_2148
NC_009952.1	RefSeq	CDS	2277653	2278543	.	+	0	ID=cds2142;Name=YP_001533485.1;Parent=gene2182;Note=SWISSPROT Q68XV0: S-adenosylmethionine uptake transporter%3B PFAM: pfam00892%3B COG: COG5006 - Predicted permease%2C DMT superfamily;Dbxref=Genbank:YP_001533485.1,GeneID:5713144;gbkey=CDS;product=putative S-adenosylmethionine uptake transporter;protein_id=YP_001533485.1;transl_table=11
NC_009952.1	RefSeq	gene	2278551	2278991	.	+	.	ID=gene2183;Name=Dshi_2149;Dbxref=GeneID:5713145;gbkey=Gene;locus_tag=Dshi_2149
NC_009952.1	RefSeq	CDS	2278551	2278991	.	+	0	ID=cds2143;Name=YP_001533486.1;Parent=gene2183;Note=COG: COG3542 - Uncharacterized conserved protein%3B PFAM: PF06172 Cupin superfamily %28DUF985%29;Dbxref=Genbank:YP_001533486.1,GeneID:5713145;gbkey=CDS;product=putative cupin;protein_id=YP_001533486.1;transl_table=11
NC_009952.1	RefSeq	gene	2279010	2280089	.	-	.	ID=gene2184;Name=anmK;Dbxref=GeneID:5713146;gbkey=Gene;gene=anmK;locus_tag=Dshi_2150
NC_009952.1	RefSeq	CDS	2279010	2280089	.	-	0	ID=cds2144;Name=YP_001533487.1;Parent=gene2184;Note=catalyzes hydrolysis of 1%2C6-anhydro bond of anyhydro-N-acetylmuramic acid %28anhMurNAc%29 and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate%3B involved in murein recycling;Dbxref=Genbank:YP_001533487.1,GeneID:5713146;gbkey=CDS;gene=anmK;product=anhydro-N-acetylmuramic acid kinase;protein_id=YP_001533487.1;transl_table=11
NC_009952.1	RefSeq	gene	2280141	2281394	.	+	.	ID=gene2185;Name=tyrS;Dbxref=GeneID:5713147;gbkey=Gene;gene=tyrS;locus_tag=Dshi_2151
NC_009952.1	RefSeq	CDS	2280141	2281394	.	+	0	ID=cds2145;Name=YP_001533488.1;Parent=gene2185;Note=Swiss-Prot: P0AGJ9-Tyrosyl-tRNA synthetase TIGRFAM: tyrosyl-tRNA synthetase PFAM: aminoacyl-tRNA synthetase class Ib;Dbxref=Genbank:YP_001533488.1,GeneID:5713147;gbkey=CDS;gene=tyrS;product=tyrosyl-tRNA synthetase;protein_id=YP_001533488.1;transl_table=11
NC_009952.1	RefSeq	gene	2281595	2282566	.	-	.	ID=gene2186;Name=Dshi_2152;Dbxref=GeneID:5713148;gbkey=Gene;locus_tag=Dshi_2152
NC_009952.1	RefSeq	CDS	2281595	2282566	.	-	0	ID=cds2146;Name=YP_001533489.1;Parent=gene2186;Note=-%23 KEGG: sil:SPO2232 hypothetical protein;Dbxref=Genbank:YP_001533489.1,GeneID:5713148;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533489.1;transl_table=11
NC_009952.1	RefSeq	gene	2282789	2283337	.	-	.	ID=gene2187;Name=Dshi_2153;Dbxref=GeneID:5713149;gbkey=Gene;locus_tag=Dshi_2153
NC_009952.1	RefSeq	CDS	2282789	2283337	.	-	0	ID=cds2147;Name=YP_001533490.1;Parent=gene2187;Note=Swiss-Prot: P23869-Peptidyl-prolyl cis-trans isomerase B PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type;Dbxref=Genbank:YP_001533490.1,GeneID:5713149;gbkey=CDS;product=putative peptidyl-prolyl cis-trans isomerase;protein_id=YP_001533490.1;transl_table=11
NC_009952.1	RefSeq	gene	2283330	2283854	.	-	.	ID=gene2188;Name=Dshi_2154;Dbxref=GeneID:5713150;gbkey=Gene;locus_tag=Dshi_2154
NC_009952.1	RefSeq	CDS	2283330	2283854	.	-	0	ID=cds2148;Name=YP_001533491.1;Parent=gene2188;Note=Swiss-Prot: P0AFL3-Peptidyl-prolyl cis-trans isomerase A PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type%3B cyclophilin type;Dbxref=Genbank:YP_001533491.1,GeneID:5713150;gbkey=CDS;product=putative peptidyl-prolyl cis-trans isomerase;protein_id=YP_001533491.1;transl_table=11
NC_009952.1	RefSeq	gene	2284018	2285199	.	+	.	ID=gene2189;Name=pgk;Dbxref=GeneID:5713151;gbkey=Gene;gene=pgk;locus_tag=Dshi_2155
NC_009952.1	RefSeq	CDS	2284018	2285199	.	+	0	ID=cds2149;Name=YP_001533492.1;Parent=gene2189;Note=Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway;Dbxref=Genbank:YP_001533492.1,GeneID:5713151;gbkey=CDS;gene=pgk;product=phosphoglycerate kinase;protein_id=YP_001533492.1;transl_table=11
NC_009952.1	RefSeq	gene	2285294	2286178	.	+	.	ID=gene2190;Name=fda;Dbxref=GeneID:5713152;gbkey=Gene;gene=fda;locus_tag=Dshi_2156
NC_009952.1	RefSeq	CDS	2285294	2286178	.	+	0	ID=cds2150;Name=YP_001533493.1;Parent=gene2190;Note=catalyzes the formation of glycerone phosphate and D-glyceraldehyde 3-phosphate from D-fructose 1%2C6-bisphosphate in glycolysis;Dbxref=Genbank:YP_001533493.1,GeneID:5713152;gbkey=CDS;gene=fda;product=fructose-1%2C6-bisphosphate aldolase;protein_id=YP_001533493.1;transl_table=11
NC_009952.1	RefSeq	gene	2286453	2286755	.	+	.	ID=gene2191;Name=Dshi_2157;Dbxref=GeneID:5713153;gbkey=Gene;locus_tag=Dshi_2157
NC_009952.1	RefSeq	CDS	2286453	2286755	.	+	0	ID=cds2151;Name=YP_001533494.1;Parent=gene2191;Note=PFAM: Septum formation initiator KEGG: jan:Jann_1692 septum formation initiator%3B similar to septum formation initiator;Dbxref=Genbank:YP_001533494.1,GeneID:5713153;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533494.1;transl_table=11
NC_009952.1	RefSeq	gene	2286855	2287850	.	+	.	ID=gene2192;Name=pdhA1;Dbxref=GeneID:5713154;gbkey=Gene;gene=pdhA1;locus_tag=Dshi_2158
NC_009952.1	RefSeq	CDS	2286855	2287850	.	+	0	ID=cds2152;Name=YP_001533495.1;Parent=gene2192;Note=Swiss-Prot: Q820A6-Pyruvate dehydrogenase E1 component subunit alpha PFAM: dehydrogenase E1 component;Dbxref=Genbank:YP_001533495.1,GeneID:5713154;gbkey=CDS;gene=pdhA1;product=pyruvate dehydrogenase E1 component subunit alpha;protein_id=YP_001533495.1;transl_table=11
NC_009952.1	RefSeq	gene	2287863	2289218	.	+	.	ID=gene2193;Name=pdhB2;Dbxref=GeneID:5713155;gbkey=Gene;gene=pdhB2;locus_tag=Dshi_2159
NC_009952.1	RefSeq	CDS	2287863	2289218	.	+	0	ID=cds2153;Name=YP_001533496.1;Parent=gene2193;Note=catalyzes the oxidative decarboxylation of pyruvate with concomitant acetylation of a lipoic acid-containing dihydrolipoamide acetyltransferase within the complex. The E1 component of the pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO%282%29. It contains multiple copies of three enzymatic components: pyruvate dehydrogenase %28E1%29%2C dihydrolipoamide acetyltransferase%28E2%29 and lipoamide dehydrogenase;Dbxref=Genbank:YP_001533496.1,GeneID:5713155;gbkey=CDS;gene=pdhB2;product=pyruvate dehydrogenase subunit beta;protein_id=YP_001533496.1;transl_table=11
NC_009952.1	RefSeq	gene	2289232	2290494	.	+	.	ID=gene2194;Name=pdhC1;Dbxref=GeneID:5713156;gbkey=Gene;gene=pdhC1;locus_tag=Dshi_2160
NC_009952.1	RefSeq	CDS	2289232	2290494	.	+	0	ID=cds2154;Name=YP_001533497.1;Parent=gene2194;Note=Swiss-Prot: Q9R9N3-Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase PFAM: biotin%2Flipoyl attachment domain-containing protein%3B catalytic domain of components of various dehydrogenase complexes%3B E3 binding domain protein;Dbxref=Genbank:YP_001533497.1,GeneID:5713156;gbkey=CDS;gene=pdhC1;product=branched-chain alpha-keto acid dehydrogenase subunit E2;protein_id=YP_001533497.1;transl_table=11
NC_009952.1	RefSeq	gene	2290509	2291318	.	-	.	ID=gene2195;Name=cysE;Dbxref=GeneID:5713157;gbkey=Gene;gene=cysE;locus_tag=Dshi_2161
NC_009952.1	RefSeq	CDS	2290509	2291318	.	-	0	ID=cds2155;Name=YP_001533498.1;Parent=gene2195;Note=Swiss-Prot: P0A9D4-Serine acetyltransferase TIGRFAM: serine O-acetyltransferase PFAM: transferase hexapeptide repeat containing protein%3B serine acetyltransferase domain protein;Dbxref=Genbank:YP_001533498.1,GeneID:5713157;gbkey=CDS;gene=cysE;product=serine O-acetyltransferase;protein_id=YP_001533498.1;transl_table=11
NC_009952.1	RefSeq	gene	2291686	2292393	.	-	.	ID=gene2196;Name=Dshi_2162;Dbxref=GeneID:5713158;gbkey=Gene;locus_tag=Dshi_2162
NC_009952.1	RefSeq	CDS	2291686	2292393	.	-	0	ID=cds2156;Name=YP_001533499.1;Parent=gene2196;Dbxref=Genbank:YP_001533499.1,GeneID:5713158;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533499.1;transl_table=11
NC_009952.1	RefSeq	gene	2292386	2296303	.	-	.	ID=gene2197;Name=Dshi_2163;Dbxref=GeneID:5713159;gbkey=Gene;locus_tag=Dshi_2163
NC_009952.1	RefSeq	CDS	2292386	2296303	.	-	0	ID=cds2157;Name=YP_001533500.1;Parent=gene2197;Note=KEGG: sil:SPO2250 hypothetical protein;Dbxref=Genbank:YP_001533500.1,GeneID:5713159;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533500.1;transl_table=11
NC_009952.1	RefSeq	gene	2296307	2296747	.	-	.	ID=gene2198;Name=Dshi_2164;Dbxref=GeneID:5713160;gbkey=Gene;locus_tag=Dshi_2164
NC_009952.1	RefSeq	CDS	2296307	2296747	.	-	0	ID=cds2158;Name=YP_001533501.1;Parent=gene2198;Note=TIGRFAM: putative phage cell wall peptidase%2C NlpC%2FP60 family PFAM: NLP%2FP60 protein KEGG: sil:SPO2251 hypothetical protein%3B similar to phage cell wall peptidase%2C NlpC%2FP60 family;Dbxref=Genbank:YP_001533501.1,GeneID:5713160;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533501.1;transl_table=11
NC_009952.1	RefSeq	gene	2296744	2297634	.	-	.	ID=gene2199;Name=Dshi_2165;Dbxref=GeneID:5713161;gbkey=Gene;locus_tag=Dshi_2165
NC_009952.1	RefSeq	CDS	2296744	2297634	.	-	0	ID=cds2159;Name=YP_001533502.1;Parent=gene2199;Note=PFAM: conserved hypothetical protein KEGG: rsq:Rsph17025_1087 hypothetical protein;Dbxref=Genbank:YP_001533502.1,GeneID:5713161;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533502.1;transl_table=11
NC_009952.1	RefSeq	gene	2297631	2298263	.	-	.	ID=gene2200;Name=Dshi_2166;Dbxref=GeneID:5713162;gbkey=Gene;locus_tag=Dshi_2166
NC_009952.1	RefSeq	CDS	2297631	2298263	.	-	0	ID=cds2160;Name=YP_001533503.1;Parent=gene2200;Note=Conserved hypothetical protein TIGR02217%2C PFAM: conserved hypothetical protein%2C KEGG: sil:SPO2253 hypothetical protein;Dbxref=Genbank:YP_001533503.1,GeneID:5713162;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533503.1;transl_table=11
NC_009952.1	RefSeq	gene	2298277	2298945	.	-	.	ID=gene2201;Name=Dshi_2167;Dbxref=GeneID:5713163;gbkey=Gene;locus_tag=Dshi_2167
NC_009952.1	RefSeq	CDS	2298277	2298945	.	-	0	ID=cds2161;Name=YP_001533504.1;Parent=gene2201;Note=COG5281%2C Phage-related minor tail protein %5BFunction unknown%5D.%3B similar to Phage-related minor tail protein;Dbxref=Genbank:YP_001533504.1,GeneID:5713163;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533504.1;transl_table=11
NC_009952.1	RefSeq	gene	2298929	2299144	.	-	.	ID=gene2202;Name=Dshi_2168;Dbxref=GeneID:5713164;gbkey=Gene;locus_tag=Dshi_2168
NC_009952.1	RefSeq	CDS	2298929	2299144	.	-	0	ID=cds2162;Name=YP_001533505.1;Parent=gene2202;Note=TIGR02216%23 phage conserved hypothetical protein;Dbxref=Genbank:YP_001533505.1,GeneID:5713164;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533505.1;transl_table=11
NC_009952.1	RefSeq	gene	2299141	2299470	.	-	.	ID=gene2203;Name=Dshi_2169;Dbxref=GeneID:5713165;gbkey=Gene;locus_tag=Dshi_2169
NC_009952.1	RefSeq	CDS	2299141	2299470	.	-	0	ID=cds2163;Name=YP_001533506.1;Parent=gene2203;Note=KEGG: rsq:Rsph17025_1083 hypothetical protein;Dbxref=Genbank:YP_001533506.1,GeneID:5713165;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533506.1;transl_table=11
NC_009952.1	RefSeq	gene	2299476	2299889	.	-	.	ID=gene2204;Name=Dshi_2170;Dbxref=GeneID:5713166;gbkey=Gene;locus_tag=Dshi_2170
NC_009952.1	RefSeq	CDS	2299476	2299889	.	-	0	ID=cds2164;Name=YP_001533507.1;Parent=gene2204;Note=TIGRFAM: phage major tail protein%2C TP901-1 family KEGG: sit:TM1040_1065 phage major tail protein%2C TP901-1%3B similar to Phage major tail protein%2C TP901-1;Dbxref=Genbank:YP_001533507.1,GeneID:5713166;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533507.1;transl_table=11
NC_009952.1	RefSeq	gene	2299911	2300321	.	-	.	ID=gene2205;Name=Dshi_2171;Dbxref=GeneID:5713167;gbkey=Gene;locus_tag=Dshi_2171
NC_009952.1	RefSeq	CDS	2299911	2300321	.	-	0	ID=cds2165;Name=YP_001533508.1;Parent=gene2205;Note=KEGG: sil:SPO2258 hypothetical protein;Dbxref=Genbank:YP_001533508.1,GeneID:5713167;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533508.1;transl_table=11
NC_009952.1	RefSeq	gene	2300318	2300656	.	-	.	ID=gene2206;Name=Dshi_2172;Dbxref=GeneID:5713168;gbkey=Gene;locus_tag=Dshi_2172
NC_009952.1	RefSeq	CDS	2300318	2300656	.	-	0	ID=cds2166;Name=YP_001533509.1;Parent=gene2206;Note=TIGR01563%23 phage head-tail adaptor%2C putative%2C SPP1 family%3B IPR013045 Conserved hypothetical protein 1563%3B TIGRFAM: phage head-tail adaptor%2C putative%3B KEGG: sil:SPO2259 head-tail adaptor%2C putative;Dbxref=Genbank:YP_001533509.1,GeneID:5713168;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533509.1;transl_table=11
NC_009952.1	RefSeq	gene	2300653	2301243	.	-	.	ID=gene2207;Name=Dshi_2173;Dbxref=GeneID:5713826;gbkey=Gene;locus_tag=Dshi_2173
NC_009952.1	RefSeq	CDS	2300653	2301243	.	-	0	ID=cds2167;Name=YP_001533510.1;Parent=gene2207;Note=KEGG: rde:RD1_3027 hypothetical protein%2C TIGR02215 phage conserved hypothetical protein%2C phiE125 gp8 family;Dbxref=Genbank:YP_001533510.1,GeneID:5713826;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533510.1;transl_table=11
NC_009952.1	RefSeq	gene	2301398	2302615	.	-	.	ID=gene2208;Name=Dshi_2174;Dbxref=GeneID:5713827;gbkey=Gene;locus_tag=Dshi_2174
NC_009952.1	RefSeq	CDS	2301398	2302615	.	-	0	ID=cds2168;Name=YP_001533511.1;Parent=gene2208;Note=TIGRFAM: phage major capsid protein%2C HK97 family PFAM: major capsid protein HK97 KEGG: jan:Jann_1635 phage major capsid protein%2C HK97%3B HK97 family;Dbxref=Genbank:YP_001533511.1,GeneID:5713827;gbkey=CDS;product=putative phage major capsid protein;protein_id=YP_001533511.1;transl_table=11
NC_009952.1	RefSeq	gene	2302612	2303229	.	-	.	ID=gene2209;Name=Dshi_2175;Dbxref=GeneID:5713828;gbkey=Gene;locus_tag=Dshi_2175
NC_009952.1	RefSeq	CDS	2302612	2303229	.	-	0	ID=cds2169;Name=YP_001533512.1;Parent=gene2209;Note=TIGRFAM: phage prohead protease%2C HK97 family PFAM: peptidase U35 phage prohead HK97 KEGG: sil:SPO2262 phage prohead protease%2C HK97 family%3B HK97 family;Dbxref=Genbank:YP_001533512.1,GeneID:5713828;gbkey=CDS;product=putative phage prohead protease;protein_id=YP_001533512.1;transl_table=11
NC_009952.1	RefSeq	gene	2303242	2303508	.	-	.	ID=gene2210;Name=Dshi_2176;Dbxref=GeneID:5713829;gbkey=Gene;locus_tag=Dshi_2176
NC_009952.1	RefSeq	CDS	2303242	2303508	.	-	0	ID=cds2170;Name=YP_001533513.1;Parent=gene2210;Note=KEGG: jan:Jann_1633 hypothetical protein;Dbxref=Genbank:YP_001533513.1,GeneID:5713829;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533513.1;transl_table=11
NC_009952.1	RefSeq	gene	2303499	2304689	.	-	.	ID=gene2211;Name=Dshi_2177;Dbxref=GeneID:5713830;gbkey=Gene;locus_tag=Dshi_2177
NC_009952.1	RefSeq	CDS	2303499	2304689	.	-	0	ID=cds2171;Name=YP_001533514.1;Parent=gene2211;Note=TIGRFAM: phage portal protein%2C HK97 family PFAM: portal protein KEGG: rde:RD1_3033 phage portal protein%2C putative%3B HK97 family;Dbxref=Genbank:YP_001533514.1,GeneID:5713830;gbkey=CDS;product=putative phage portal protein;protein_id=YP_001533514.1;transl_table=11
NC_009952.1	RefSeq	gene	2304797	2306155	.	-	.	ID=gene2212;Name=Dshi_2178;Dbxref=GeneID:5713831;gbkey=Gene;locus_tag=Dshi_2178
NC_009952.1	RefSeq	CDS	2304797	2306155	.	-	0	ID=cds2172;Name=YP_001533515.1;Parent=gene2212;Note=PFAM: protein of unknown function DUF264 KEGG: rde:RD1_3034 hypothetical protein;Dbxref=Genbank:YP_001533515.1,GeneID:5713831;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533515.1;transl_table=11
NC_009952.1	RefSeq	gene	2306608	2307762	.	-	.	ID=gene2213;Name=Dshi_2179;Dbxref=GeneID:5713832;gbkey=Gene;locus_tag=Dshi_2179
NC_009952.1	RefSeq	CDS	2306608	2307762	.	-	0	ID=cds2173;Name=YP_001533516.1;Parent=gene2213;Note=PFAM: aminodeoxychorismate lyase KEGG: jan:Jann_1630 aminodeoxychorismate lyase%3B related to aminodeoxychorismate lyase;Dbxref=Genbank:YP_001533516.1,GeneID:5713832;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533516.1;transl_table=11
NC_009952.1	RefSeq	gene	2307762	2309024	.	-	.	ID=gene2214;Name=fabF;Dbxref=GeneID:5713833;gbkey=Gene;gene=fabF;locus_tag=Dshi_2180
NC_009952.1	RefSeq	CDS	2307762	2309024	.	-	0	ID=cds2174;Name=YP_001533517.1;Parent=gene2214;Note=FabF%3B beta-ketoacyl-ACP synthase II%2C KASII%3B catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP%3B required for the elongation of short-chain unsaturated acyl-ACP;Dbxref=Genbank:YP_001533517.1,GeneID:5713833;gbkey=CDS;gene=fabF;product=3-oxoacyl-%28acyl carrier protein%29 synthase II;protein_id=YP_001533517.1;transl_table=11
NC_009952.1	RefSeq	gene	2309189	2309422	.	-	.	ID=gene2215;Name=acpP;Dbxref=GeneID:5713834;gbkey=Gene;gene=acpP;locus_tag=Dshi_2181
NC_009952.1	RefSeq	CDS	2309189	2309422	.	-	0	ID=cds2175;Name=YP_001533518.1;Parent=gene2215;Note=carries the fatty acid chain in fatty acid biosynthesis;Dbxref=Genbank:YP_001533518.1,GeneID:5713834;gbkey=CDS;gene=acpP;product=acyl carrier protein;protein_id=YP_001533518.1;transl_table=11
NC_009952.1	RefSeq	gene	2309595	2310332	.	-	.	ID=gene2216;Name=Dshi_2182;Dbxref=GeneID:5713835;gbkey=Gene;locus_tag=Dshi_2182
NC_009952.1	RefSeq	CDS	2309595	2310332	.	-	0	ID=cds2176;Name=YP_001533519.1;Parent=gene2216;Note=Swiss-Prot: P0AEK2- 3-oxoacyl-%5Bacyl-carrier-protein%5D reductase fabG Swiss-Prot: P72332-Nodulation protein G TIGRFAM: 3-oxoacyl-%28acyl-carrier-protein%29 reductase PFAM: NAD-dependent epimerase%2Fdehydratase%3B short-chain dehydrogenase%2Freductase SDR;Dbxref=Genbank:YP_001533519.1,GeneID:5713835;gbkey=CDS;product=putative 3-oxoacyl-%5Bacyl-carrier-protein%5D reductase;protein_id=YP_001533519.1;transl_table=11
NC_009952.1	RefSeq	gene	2310332	2311279	.	-	.	ID=gene2217;Name=fabD;Dbxref=GeneID:5713836;gbkey=Gene;gene=fabD;locus_tag=Dshi_2183
NC_009952.1	RefSeq	CDS	2310332	2311279	.	-	0	ID=cds2177;Name=YP_001533520.1;Parent=gene2217;Note=Swiss-Prot hit: spP0AAI9 %28FABD_ECOLI%29%3B TIGR00128%23 malonyl CoA-acyl carrier protein transacylase PFAM: Acyl transferase KEGG: rsq:Rsph17025_1221 malonyl CoA-acyl carrier protein transacylase;Dbxref=Genbank:YP_001533520.1,GeneID:5713836;gbkey=CDS;gene=fabD;product=malonyl CoA-acyl carrier protein transacylase;protein_id=YP_001533520.1;transl_table=11
NC_009952.1	RefSeq	gene	2311440	2312642	.	+	.	ID=gene2218;Name=Dshi_2184;Dbxref=GeneID:5713837;gbkey=Gene;locus_tag=Dshi_2184
NC_009952.1	RefSeq	CDS	2311440	2312642	.	+	0	ID=cds2178;Name=YP_001533521.1;Parent=gene2218;Note=PFAM: YceI family protein%3B cytochrome B561 KEGG: rde:RD1_3041 cytochrome b561%2C putative;Dbxref=Genbank:YP_001533521.1,GeneID:5713837;gbkey=CDS;product=putative cytochrome B561;protein_id=YP_001533521.1;transl_table=11
NC_009952.1	RefSeq	gene	2312706	2313290	.	-	.	ID=gene2219;Name=Dshi_2185;Dbxref=GeneID:5713838;gbkey=Gene;locus_tag=Dshi_2185
NC_009952.1	RefSeq	CDS	2312706	2313290	.	-	0	ID=cds2179;Name=YP_001533522.1;Parent=gene2219;Note=COG2353 - Uncharacterized conserved protein PFAM: YceI family protein%3B related to YceI family protein;Dbxref=Genbank:YP_001533522.1,GeneID:5713838;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533522.1;transl_table=11
NC_009952.1	RefSeq	gene	2313554	2313907	.	+	.	ID=gene2220;Name=rpsF;Dbxref=GeneID:5713839;gbkey=Gene;gene=rpsF;locus_tag=Dshi_2186
NC_009952.1	RefSeq	CDS	2313554	2313907	.	+	0	ID=cds2180;Name=YP_001533523.1;Parent=gene2220;Note=binds cooperatively with S18 to the S15-16S complex%2C allowing platform assembly to continue with S11 and S21;Dbxref=Genbank:YP_001533523.1,GeneID:5713839;gbkey=CDS;gene=rpsF;product=30S ribosomal protein S6;protein_id=YP_001533523.1;transl_table=11
NC_009952.1	RefSeq	gene	2313936	2314163	.	+	.	ID=gene2221;Name=rpsR;Dbxref=GeneID:5713840;gbkey=Gene;gene=rpsR;locus_tag=Dshi_2187
NC_009952.1	RefSeq	CDS	2313936	2314163	.	+	0	ID=cds2181;Name=YP_001533524.1;Parent=gene2221;Note=binds as a heterodimer with protein S6 to the central domain of the 16S rRNA%3B helps stabilize the platform of the 30S subunit;Dbxref=Genbank:YP_001533524.1,GeneID:5713840;gbkey=CDS;gene=rpsR;product=30S ribosomal protein S18;protein_id=YP_001533524.1;transl_table=11
NC_009952.1	RefSeq	gene	2314176	2314805	.	+	.	ID=gene2222;Name=rplI;Dbxref=GeneID:5713841;gbkey=Gene;gene=rplI;locus_tag=Dshi_2188
NC_009952.1	RefSeq	CDS	2314176	2314805	.	+	0	ID=cds2182;Name=YP_001533525.1;Parent=gene2222;Note=in Escherichia coli this protein is wrapped around the base of the L1 stalk;Dbxref=Genbank:YP_001533525.1,GeneID:5713841;gbkey=CDS;gene=rplI;product=50S ribosomal protein L9;protein_id=YP_001533525.1;transl_table=11
NC_009952.1	RefSeq	gene	2314997	2316958	.	+	.	ID=gene2223;Name=cpdB;Dbxref=GeneID:5713842;gbkey=Gene;gene=cpdB;locus_tag=Dshi_2189
NC_009952.1	RefSeq	CDS	2314997	2316958	.	+	0	ID=cds2183;Name=YP_001533526.1;Parent=gene2223;Note=periplasmic enzyme%3B functions during ribonucleic acid degradation%3B 2%27%2C3%27-cyclic nucleotides are first converted to 3%27-nucleotide and then cleaved to yield a ribonucleotide and a phosphate;Dbxref=Genbank:YP_001533526.1,GeneID:5713842;gbkey=CDS;gene=cpdB;product=bifunctional 2%27%2C3%27-cyclic nucleotide 2%27-phosphodiesterase%2F3%27-nucleotidase periplasmic protein;protein_id=YP_001533526.1;transl_table=11
NC_009952.1	RefSeq	gene	2317027	2318355	.	-	.	ID=gene2224;Name=tig;Dbxref=GeneID:5713843;gbkey=Gene;gene=tig;locus_tag=Dshi_2190
NC_009952.1	RefSeq	CDS	2317027	2318355	.	-	0	ID=cds2184;Name=YP_001533527.1;Parent=gene2224;Note=Tig%3B RopA%3B peptidyl-prolyl cis%2Ftrans isomerase%3B promotes folding of newly synthesized proteins%3B binds ribosomal 50S subunit%3B forms a homodimer;Dbxref=Genbank:YP_001533527.1,GeneID:5713843;gbkey=CDS;gene=tig;product=trigger factor;protein_id=YP_001533527.1;transl_table=11
NC_009952.1	RefSeq	gene	2318521	2318832	.	-	.	ID=gene2225;Name=Dshi_2191;Dbxref=GeneID:5713844;gbkey=Gene;locus_tag=Dshi_2191
NC_009952.1	RefSeq	CDS	2318521	2318832	.	-	0	ID=cds2185;Name=YP_001533528.1;Parent=gene2225;Note=PFAM: ETC complex I subunit conserved region KEGG: sit:TM1040_0143 ETC complex I subunit conserved region;Dbxref=Genbank:YP_001533528.1,GeneID:5713844;gbkey=CDS;product=putative ETC complex subunit I conserved region;protein_id=YP_001533528.1;transl_table=11
NC_009952.1	RefSeq	gene	2319332	2321509	.	+	.	ID=gene2226;Name=uvrB;Dbxref=GeneID:5713845;gbkey=Gene;gene=uvrB;locus_tag=Dshi_2192
NC_009952.1	RefSeq	CDS	2319332	2321509	.	+	0	ID=cds2186;Name=YP_001533529.1;Parent=gene2226;Note=The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands%2C where it probes for the presence of a lesion;Dbxref=Genbank:YP_001533529.1,GeneID:5713845;gbkey=CDS;gene=uvrB;product=excinuclease ABC subunit B;protein_id=YP_001533529.1;transl_table=11
NC_009952.1	RefSeq	gene	2321538	2321693	.	-	.	ID=gene2227;Name=Dshi_2193;Dbxref=GeneID:5713846;gbkey=Gene;locus_tag=Dshi_2193
NC_009952.1	RefSeq	CDS	2321538	2321693	.	-	0	ID=cds2187;Name=YP_001533530.1;Parent=gene2227;Dbxref=Genbank:YP_001533530.1,GeneID:5713846;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533530.1;transl_table=11
NC_009952.1	RefSeq	gene	2321854	2322237	.	+	.	ID=gene2228;Name=Dshi_2194;Dbxref=GeneID:5713847;gbkey=Gene;locus_tag=Dshi_2194
NC_009952.1	RefSeq	CDS	2321854	2322237	.	+	0	ID=cds2188;Name=YP_001533531.1;Parent=gene2228;Dbxref=Genbank:YP_001533531.1,GeneID:5713847;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533531.1;transl_table=11
NC_009952.1	RefSeq	gene	2322507	2322644	.	-	.	ID=gene2229;Name=Dshi_2195;Dbxref=GeneID:5713848;gbkey=Gene;locus_tag=Dshi_2195
NC_009952.1	RefSeq	CDS	2322507	2322644	.	-	0	ID=cds2189;Name=YP_001533532.1;Parent=gene2229;Note=PFAM: Entericidin EcnAB%3B similar to Entericidin EcnAB;Dbxref=Genbank:YP_001533532.1,GeneID:5713848;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533532.1;transl_table=11
NC_009952.1	RefSeq	gene	2323007	2324029	.	-	.	ID=gene2230;Name=Dshi_2196;Dbxref=GeneID:5713849;gbkey=Gene;locus_tag=Dshi_2196
NC_009952.1	RefSeq	CDS	2323007	2324029	.	-	0	ID=cds2190;Name=YP_001533533.1;Parent=gene2230;Dbxref=Genbank:YP_001533533.1,GeneID:5713849;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533533.1;transl_table=11
NC_009952.1	RefSeq	gene	2324302	2325957	.	-	.	ID=gene2231;Name=Dshi_2197;Dbxref=GeneID:5713850;gbkey=Gene;locus_tag=Dshi_2197
NC_009952.1	RefSeq	CDS	2324302	2325957	.	-	0	ID=cds2191;Name=YP_001533534.1;Parent=gene2231;Note=ChvD%3B in Agrobacterium tumefaciens%2C mutations in both Walker boxes were found to affect virulence;Dbxref=Genbank:YP_001533534.1,GeneID:5713850;gbkey=CDS;product=putative ABC transporter ATP-binding protein;protein_id=YP_001533534.1;transl_table=11
NC_009952.1	RefSeq	gene	2326037	2326516	.	+	.	ID=gene2232;Name=Dshi_2198;Dbxref=GeneID:5713851;gbkey=Gene;locus_tag=Dshi_2198
NC_009952.1	RefSeq	CDS	2326037	2326516	.	+	0	ID=cds2192;Name=YP_001533535.1;Parent=gene2232;Note=PFAM: MOSC domain containing protein %28pfam03473%29 KEGG: sil:SPO0448 MOSC domain protein%3B similar to MOCO sulphurase %28MOSC domain%29;Dbxref=Genbank:YP_001533535.1,GeneID:5713851;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533535.1;transl_table=11
NC_009952.1	RefSeq	gene	2326735	2327424	.	+	.	ID=gene2233;Name=Dshi_2199;Dbxref=GeneID:5713852;gbkey=Gene;locus_tag=Dshi_2199
NC_009952.1	RefSeq	CDS	2326735	2327424	.	+	0	ID=cds2193;Name=YP_001533536.1;Parent=gene2233;Note=TIGRFAM: aspartate racemase PFAM: Asp%2FGlu racemase KEGG: atc:AGR_L_3474 hypothetical protein;Dbxref=Genbank:YP_001533536.1,GeneID:5713852;gbkey=CDS;product=aspartate%2Fglutamate racemase family protein;protein_id=YP_001533536.1;transl_table=11
NC_009952.1	RefSeq	gene	2327502	2328092	.	-	.	ID=gene2234;Name=Dshi_2200;Dbxref=GeneID:5713853;gbkey=Gene;locus_tag=Dshi_2200
NC_009952.1	RefSeq	CDS	2327502	2328092	.	-	0	ID=cds2194;Name=YP_001533537.1;Parent=gene2234;Note=PFAM: regulatory protein TetR KEGG: gvi:gll0188 TetR family transcriptional regulatory protein;Dbxref=Genbank:YP_001533537.1,GeneID:5713853;gbkey=CDS;product=putative regulatory protein TetR;protein_id=YP_001533537.1;transl_table=11
NC_009952.1	RefSeq	gene	2328093	2328536	.	-	.	ID=gene2235;Name=Dshi_2201;Dbxref=GeneID:5713854;gbkey=Gene;locus_tag=Dshi_2201
NC_009952.1	RefSeq	CDS	2328093	2328536	.	-	0	ID=cds2195;Name=YP_001533538.1;Parent=gene2235;Note=KEGG: tbd:Tbd_0484 hypothetical protein PFAM: Isoprenylcysteine carboxyl methyltransferase %28ICMT%29 family %28pfam04140%29 COG2020: Putative protein-S-isoprenylcysteine methyltransferase;Dbxref=Genbank:YP_001533538.1,GeneID:5713854;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533538.1;transl_table=11
NC_009952.1	RefSeq	gene	2328739	2329656	.	-	.	ID=gene2236;Name=Dshi_2202;Dbxref=GeneID:5713855;gbkey=Gene;locus_tag=Dshi_2202
NC_009952.1	RefSeq	CDS	2328739	2329656	.	-	0	ID=cds2196;Name=YP_001533539.1;Parent=gene2236;Dbxref=Genbank:YP_001533539.1,GeneID:5713855;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533539.1;transl_table=11
NC_009952.1	RefSeq	gene	2329752	2330339	.	+	.	ID=gene2237;Name=nadD;Dbxref=GeneID:5713856;gbkey=Gene;gene=nadD;locus_tag=Dshi_2203
NC_009952.1	RefSeq	CDS	2329752	2330339	.	+	0	ID=cds2197;Name=YP_001533540.1;Parent=gene2237;Note=transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide %28NaAD%29 which is then converted to the ubiquitous compound NAD by NAD synthetase%3B essential enzyme in bacteria;Dbxref=Genbank:YP_001533540.1,GeneID:5713856;gbkey=CDS;gene=nadD;product=nicotinic acid mononucleotide adenylyltransferase;protein_id=YP_001533540.1;transl_table=11
NC_009952.1	RefSeq	gene	2330428	2330763	.	+	.	ID=gene2238;Name=Dshi_2204;Dbxref=GeneID:5713857;gbkey=Gene;locus_tag=Dshi_2204
NC_009952.1	RefSeq	CDS	2330428	2330763	.	+	0	ID=cds2198;Name=YP_001533541.1;Parent=gene2238;Dbxref=Genbank:YP_001533541.1,GeneID:5713857;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533541.1;transl_table=11
NC_009952.1	RefSeq	gene	2330803	2331225	.	-	.	ID=gene2239;Name=Dshi_2205;Dbxref=GeneID:5713858;gbkey=Gene;locus_tag=Dshi_2205
NC_009952.1	RefSeq	CDS	2330803	2331225	.	-	0	ID=cds2199;Name=YP_001533542.1;Parent=gene2239;Dbxref=Genbank:YP_001533542.1,GeneID:5713858;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533542.1;transl_table=11
NC_009952.1	RefSeq	gene	2331348	2333006	.	+	.	ID=gene2240;Name=lysK;Dbxref=GeneID:5713859;gbkey=Gene;gene=lysK;locus_tag=Dshi_2206
NC_009952.1	RefSeq	CDS	2331348	2333006	.	+	0	ID=cds2200;Name=YP_001533543.1;Parent=gene2240;Note=class I%3B LysRS1%3B catalyzes a two-step reaction%2C first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA%3B in Methanosarcina barkeri this enzyme charges both tRNA molecules for lysine that exist in this organism %28but the tRNALysUUU very poorly%29 and in the presence of LysRS2 can charge tRNAPyl with lysine;Dbxref=Genbank:YP_001533543.1,GeneID:5713859;gbkey=CDS;gene=lysK;product=lysyl-tRNA synthetase;protein_id=YP_001533543.1;transl_table=11
NC_009952.1	RefSeq	gene	2333095	2333496	.	+	.	ID=gene2241;Name=Dshi_2207;Dbxref=GeneID:5713860;gbkey=Gene;locus_tag=Dshi_2207
NC_009952.1	RefSeq	CDS	2333095	2333496	.	+	0	ID=cds2201;Name=YP_001533544.1;Parent=gene2241;Note=KEGG:sil:SPO0457 hypothetical protein;Dbxref=Genbank:YP_001533544.1,GeneID:5713860;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533544.1;transl_table=11
NC_009952.1	RefSeq	gene	2333780	2335267	.	-	.	ID=gene2242;Name=Dshi_2208;Dbxref=GeneID:5713861;gbkey=Gene;locus_tag=Dshi_2208
NC_009952.1	RefSeq	CDS	2333780	2335267	.	-	0	ID=cds2202;Name=YP_001533545.1;Parent=gene2242;Note=Swiss-Prot: spP39844%2C spP45161: Penicillin-binding protein 4 TIGRFAM: D-alanyl-D-alanine carboxypeptidase%2FD-alanyl-D-alanine-endopeptidase PFAM: peptidase S13 D-Ala-D-Ala carboxypeptidase C KEGG: sit:TM1040_2259 D-alanyl-D-alanine carboxypeptidase%2FD-alanyl-D-alanine-endopeptidase;Dbxref=Genbank:YP_001533545.1,GeneID:5713861;gbkey=CDS;product=putative D-alanyl-D-alanine carboxypeptidase%2Fendopeptidase;protein_id=YP_001533545.1;transl_table=11
NC_009952.1	RefSeq	gene	2335419	2336249	.	+	.	ID=gene2243;Name=Dshi_2209;Dbxref=GeneID:5713862;gbkey=Gene;locus_tag=Dshi_2209
NC_009952.1	RefSeq	CDS	2335419	2336249	.	+	0	ID=cds2203;Name=YP_001533546.1;Parent=gene2243;Note=Swiss-Prot: spQ9ZE70 COG5006: predicted permease%2C DMT superfamily PFAM: protein of unknown function DUF6 transmembrane KEGG: jan:Jann_3630 protein of unknown function DUF6%2C transmembrane%3B associated with drug%2Fmetabolite transport;Dbxref=Genbank:YP_001533546.1,GeneID:5713862;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533546.1;transl_table=11
NC_009952.1	RefSeq	gene	2336408	2338699	.	+	.	ID=gene2244;Name=Dshi_2210;Dbxref=GeneID:5713863;gbkey=Gene;locus_tag=Dshi_2210
NC_009952.1	RefSeq	CDS	2336408	2338699	.	+	0	ID=cds2204;Name=YP_001533547.1;Parent=gene2244;Note=KEGG: sil:SPO0459 hypothetical protein;Dbxref=Genbank:YP_001533547.1,GeneID:5713863;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533547.1;transl_table=11
NC_009952.1	RefSeq	gene	2338802	2339278	.	+	.	ID=gene2245;Name=Dshi_2211;Dbxref=GeneID:5713864;gbkey=Gene;locus_tag=Dshi_2211
NC_009952.1	RefSeq	CDS	2338802	2339278	.	+	0	ID=cds2205;Name=YP_001533548.1;Parent=gene2245;Note=PFAM: protein of unknown function DUF427 KEGG: jan:Jann_3615 protein of unknown function DUF427;Dbxref=Genbank:YP_001533548.1,GeneID:5713864;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533548.1;transl_table=11
NC_009952.1	RefSeq	gene	2339288	2339782	.	-	.	ID=gene2246;Name=Dshi_2212;Dbxref=GeneID:5713865;gbkey=Gene;locus_tag=Dshi_2212
NC_009952.1	RefSeq	CDS	2339288	2339782	.	-	0	ID=cds2206;Name=YP_001533549.1;Parent=gene2246;Note=PFAM: pyridoxamine 5-phosphate oxidase-related FMN-binding KEGG: jan:Jann_3613 pyridoxamine 5-phosphate oxidase-related%2C FMN-binding%3B related to pyridoxamine 5-phosphate oxidase;Dbxref=Genbank:YP_001533549.1,GeneID:5713865;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533549.1;transl_table=11
NC_009952.1	RefSeq	gene	2339879	2340286	.	+	.	ID=gene2247;Name=Dshi_2213;Dbxref=GeneID:5713866;gbkey=Gene;locus_tag=Dshi_2213
NC_009952.1	RefSeq	CDS	2339879	2340286	.	+	0	ID=cds2207;Name=YP_001533550.1;Parent=gene2247;Note=PFAM: UspA domain protein KEGG: rde:RD1_4076 universal stress family protein%2C putative;Dbxref=Genbank:YP_001533550.1,GeneID:5713866;gbkey=CDS;product=putative UspA domain-containing protein;protein_id=YP_001533550.1;transl_table=11
NC_009952.1	RefSeq	gene	2340335	2340664	.	+	.	ID=gene2248;Name=Dshi_2214;Dbxref=GeneID:5713867;gbkey=Gene;locus_tag=Dshi_2214
NC_009952.1	RefSeq	CDS	2340335	2340664	.	+	0	ID=cds2208;Name=YP_001533551.1;Parent=gene2248;Note=PFAM: Antibiotic biosynthesis monooxygenase KEGG: sil:SPO0462 antibiotic biosynthesis monooxygenase domain protein%3B related to antibiotic biosynthesis monooxygenase;Dbxref=Genbank:YP_001533551.1,GeneID:5713867;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533551.1;transl_table=11
NC_009952.1	RefSeq	gene	2340674	2341336	.	-	.	ID=gene2249;Name=Dshi_2215;Dbxref=GeneID:5713868;gbkey=Gene;locus_tag=Dshi_2215
NC_009952.1	RefSeq	CDS	2340674	2341336	.	-	0	ID=cds2209;Name=YP_001533552.1;Parent=gene2249;Note=KEGG: rsq:Rsph17025_2878 hypothetical protein;Dbxref=Genbank:YP_001533552.1,GeneID:5713868;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533552.1;transl_table=11
NC_009952.1	RefSeq	gene	2341451	2342086	.	+	.	ID=gene2250;Name=Dshi_2216;Dbxref=GeneID:5713869;gbkey=Gene;locus_tag=Dshi_2216
NC_009952.1	RefSeq	CDS	2341451	2342086	.	+	0	ID=cds2210;Name=YP_001533553.1;Parent=gene2250;Note=PFAM: pfam00991 ParA family ATPase COG1192: ATPases involved in chromosome partitioning%3B associated with ATPases involved in chromosome partitioning;Dbxref=Genbank:YP_001533553.1,GeneID:5713869;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533553.1;transl_table=11
NC_009952.1	RefSeq	gene	2342145	2342387	.	+	.	ID=gene2251;Name=Dshi_2217;Dbxref=GeneID:5713870;gbkey=Gene;locus_tag=Dshi_2217
NC_009952.1	RefSeq	CDS	2342145	2342387	.	+	0	ID=cds2211;Name=YP_001533554.1;Parent=gene2251;Note=COG3809: Uncharacterized protein conserved in bacteria KEGG: rde:RD1_1249 hypothetical protein;Dbxref=Genbank:YP_001533554.1,GeneID:5713870;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533554.1;transl_table=11
NC_009952.1	RefSeq	gene	2343059	2343469	.	-	.	ID=gene2252;Name=Dshi_2218;Dbxref=GeneID:5713871;gbkey=Gene;locus_tag=Dshi_2218
NC_009952.1	RefSeq	CDS	2343059	2343469	.	-	0	ID=cds2212;Name=YP_001533555.1;Parent=gene2252;Note=Swiss-Prot entry: P0A1A1 Acyl-CoA thioester hydrolase yciA COG1607: Acyl-CoA hydrolase PFAM: thioesterase superfamily protein KEGG: sil:SPO0440 thioesterase family protein;Dbxref=Genbank:YP_001533555.1,GeneID:5713871;gbkey=CDS;product=putative Acyl-CoA thioester hydrolase;protein_id=YP_001533555.1;transl_table=11
NC_009952.1	RefSeq	gene	2343691	2343897	.	+	.	ID=gene2253;Name=Dshi_2219;Dbxref=GeneID:5713872;gbkey=Gene;locus_tag=Dshi_2219
NC_009952.1	RefSeq	CDS	2343691	2343897	.	+	0	ID=cds2213;Name=YP_001533556.1;Parent=gene2253;Note=PFAM: Cold-shock protein DNA-binding SMART: Cold shock protein KEGG: rde:RD1_1402 cold shock protein CspA-related protein%2C putative;Dbxref=Genbank:YP_001533556.1,GeneID:5713872;gbkey=CDS;product=putative cold-shock DNA-binding domain-containing protein;protein_id=YP_001533556.1;transl_table=11
NC_009952.1	RefSeq	gene	2343977	2344417	.	+	.	ID=gene2254;Name=Dshi_2220;Dbxref=GeneID:5713873;gbkey=Gene;locus_tag=Dshi_2220
NC_009952.1	RefSeq	CDS	2343977	2344417	.	+	0	ID=cds2214;Name=YP_001533557.1;Parent=gene2254;Note=PFAM: protein of unknown function DUF1332 KEGG: sil:SPO1309 hypothetical protein COG4103: Uncharacterized protein conserved in bacteria;Dbxref=Genbank:YP_001533557.1,GeneID:5713873;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533557.1;transl_table=11
NC_009952.1	RefSeq	gene	2344582	2345361	.	+	.	ID=gene2255;Name=Dshi_2221;Dbxref=GeneID:5713874;gbkey=Gene;locus_tag=Dshi_2221
NC_009952.1	RefSeq	CDS	2344582	2345361	.	+	0	ID=cds2215;Name=YP_001533558.1;Parent=gene2255;Note=COG4598: ABC-type histidine transport system%2C ATPase component PFAM: ABC transporter related SMART: AAA ATPase KEGG: rde:RD1_1899 amino acid ABC transporter%2C ATP-binding protein%3B ATPase subunit;Dbxref=Genbank:YP_001533558.1,GeneID:5713874;gbkey=CDS;product=putative amino acid ABC transporter;protein_id=YP_001533558.1;transl_table=11
NC_009952.1	RefSeq	gene	2345400	2346128	.	+	.	ID=gene2256;Name=Dshi_2222;Dbxref=GeneID:5713875;gbkey=Gene;locus_tag=Dshi_2222
NC_009952.1	RefSeq	CDS	2345400	2346128	.	+	0	ID=cds2216;Name=YP_001533559.1;Parent=gene2256;Note=PFAM: extracellular solute-binding protein family 3 COG0834: ABC-type amino acid transport%2Fsignal transduction systems%2C periplasmic component%2Fdomain SMART: ionotropic glutamate receptor KEGG: rde:RD1_1898 periplasmic binding protein%2C putative%3B family 3;Dbxref=Genbank:YP_001533559.1,GeneID:5713875;gbkey=CDS;product=extracellular solute-binding protein;protein_id=YP_001533559.1;transl_table=11
NC_009952.1	RefSeq	gene	2346203	2347090	.	+	.	ID=gene2257;Name=Dshi_2223;Dbxref=GeneID:5713876;gbkey=Gene;locus_tag=Dshi_2223
NC_009952.1	RefSeq	CDS	2346203	2347090	.	+	0	ID=cds2217;Name=YP_001533560.1;Parent=gene2257;Note=Swiss-Prot entry: P52094 Histidine transport system permease protein hisQ COG4215: ABC-type arginine transport system%2C permease component KEGG: sit:TM1040_1713 binding-protein-dependent transport systems inner membrane component;Dbxref=Genbank:YP_001533560.1,GeneID:5713876;gbkey=CDS;product=putative amino-acid ABC transporter permease;protein_id=YP_001533560.1;transl_table=11
NC_009952.1	RefSeq	gene	2347087	2347893	.	+	.	ID=gene2258;Name=Dshi_2224;Dbxref=GeneID:5713877;gbkey=Gene;locus_tag=Dshi_2224
NC_009952.1	RefSeq	CDS	2347087	2347893	.	+	0	ID=cds2218;Name=YP_001533561.1;Parent=gene2258;Note=Swiss-Prot entry: P0A2I7 Histidine transport system permease protein hisM TIGRFAM: polar amino acid ABC transporter%2C inner membrane subunit PFAM: binding-protein-dependent transport systems inner membrane component KEGG: sit:TM1040_1714 amino acid ABC transporter%2C permease protein%2C 3-TM region%2C His%2FGlu%2FGln%2FArg%2Fopine%3B inner membrane subunit;Dbxref=Genbank:YP_001533561.1,GeneID:5713877;gbkey=CDS;product=putative polar amino acid ABC transporter;protein_id=YP_001533561.1;transl_table=11
NC_009952.1	RefSeq	gene	2347962	2348672	.	+	.	ID=gene2259;Name=Dshi_2225;Dbxref=GeneID:5713878;gbkey=Gene;locus_tag=Dshi_2225
NC_009952.1	RefSeq	CDS	2347962	2348672	.	+	0	ID=cds2219;Name=YP_001533562.1;Parent=gene2259;Note=PFAM: glutamine amidotransferase class-I KEGG: pde:Pden_1396 glutamine amidotransferase class-I COG0518: GMP synthase - Glutamine amidotransferase domain;Dbxref=Genbank:YP_001533562.1,GeneID:5713878;gbkey=CDS;product=putative glutamine amidotransferase class-I;protein_id=YP_001533562.1;transl_table=11
NC_009952.1	RefSeq	gene	2348653	2350023	.	+	.	ID=gene2260;Name=Dshi_2226;Dbxref=GeneID:5713879;gbkey=Gene;locus_tag=Dshi_2226
NC_009952.1	RefSeq	CDS	2348653	2350023	.	+	0	ID=cds2220;Name=YP_001533563.1;Parent=gene2260;Note=Swiss-Prot: P78061-Gamma-glutamylputrescine synthetase %2F Q9HNI2-Glutamine synthetase PFAM: glutamine synthetase catalytic region KEGG: sil:SPO1300 glutamine synthetase family protein;Dbxref=Genbank:YP_001533563.1,GeneID:5713879;gbkey=CDS;product=glutamine synthetase;protein_id=YP_001533563.1;transl_table=11
NC_009952.1	RefSeq	gene	2350024	2351328	.	+	.	ID=gene2261;Name=Dshi_2227;Dbxref=GeneID:5713880;gbkey=Gene;locus_tag=Dshi_2227
NC_009952.1	RefSeq	CDS	2350024	2351328	.	+	0	ID=cds2221;Name=YP_001533564.1;Parent=gene2261;Note=Swiss-Prot: P37906-Probable oxidoreductase PFAM: FAD dependent oxidoreductase KEGG: sit:TM1040_1839 FAD dependent oxidoreductase;Dbxref=Genbank:YP_001533564.1,GeneID:5713880;gbkey=CDS;product=putative FAD dependent oxidoreductase;protein_id=YP_001533564.1;transl_table=11
NC_009952.1	RefSeq	gene	2351401	2352594	.	+	.	ID=gene2262;Name=Dshi_2228;Dbxref=GeneID:5713881;gbkey=Gene;locus_tag=Dshi_2228
NC_009952.1	RefSeq	CDS	2351401	2352594	.	+	0	ID=cds2222;Name=YP_001533565.1;Parent=gene2262;Note=PFAM: DegT%2FDnrJ%2FEryC1%2FStrS aminotransferase%3B aromatic amino acid beta-eliminating lyase%2Fthreonine aldolase%3B aminotransferase class I and II KEGG: sil:SPO1295 aminotransferase%2C DegT%2FDnrJ%2FEryC1%2FStrS family COG0399:Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis%3B DegT%2FDnrJ%2FEryC1%2FStrS family;Dbxref=Genbank:YP_001533565.1,GeneID:5713881;gbkey=CDS;product=putative aminotransferase;protein_id=YP_001533565.1;transl_table=11
NC_009952.1	RefSeq	gene	2352591	2353535	.	-	.	ID=gene2263;Name=Dshi_2229;Dbxref=GeneID:5713882;gbkey=Gene;locus_tag=Dshi_2229
NC_009952.1	RefSeq	CDS	2352591	2353535	.	-	0	ID=cds2223;Name=YP_001533566.1;Parent=gene2263;Note=PFAM: regulatory protein LysR%3B LysR substrate-binding Swiss-Prot: P0ACQ4-contains the same pfam domains KEGG: sil:SPO0980 transcriptional regulator%2C LysR family%3B LysR family;Dbxref=Genbank:YP_001533566.1,GeneID:5713882;gbkey=CDS;product=putative transcriptional regulator;protein_id=YP_001533566.1;transl_table=11
NC_009952.1	RefSeq	gene	2353581	2354141	.	-	.	ID=gene2264;Name=Dshi_2230;Dbxref=GeneID:5713883;gbkey=Gene;locus_tag=Dshi_2230
NC_009952.1	RefSeq	CDS	2353581	2354141	.	-	0	ID=cds2224;Name=YP_001533567.1;Parent=gene2264;Note=TIGRFAM: polyhydroxyalkanoate synthesis repressor PhaR PFAM: PHB accumulation regulatory domain protein%3B PHA accumulation regulator DNA-binding protein KEGG: rsq:Rsph17025_0856 polyhydroxyalkonate synthesis repressor%2C PhaR%3B PhaR;Dbxref=Genbank:YP_001533567.1,GeneID:5713883;gbkey=CDS;product=putative polyhydroxyalkonate synthesis repressor;protein_id=YP_001533567.1;transl_table=11
NC_009952.1	RefSeq	gene	2354276	2354704	.	-	.	ID=gene2265;Name=Dshi_2231;Dbxref=GeneID:5713884;gbkey=Gene;locus_tag=Dshi_2231
NC_009952.1	RefSeq	CDS	2354276	2354704	.	-	0	ID=cds2225;Name=YP_001533568.1;Parent=gene2265;Note=NCBI: YP_001043910 - hypothetical protein Rsph17029_2035;Dbxref=Genbank:YP_001533568.1,GeneID:5713884;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533568.1;transl_table=11
NC_009952.1	RefSeq	gene	2354912	2355358	.	-	.	ID=gene2266;Name=Dshi_2232;Dbxref=GeneID:5713885;gbkey=Gene;locus_tag=Dshi_2232
NC_009952.1	RefSeq	CDS	2354912	2355358	.	-	0	ID=cds2226;Name=YP_001533569.1;Parent=gene2266;Note=NCBI: YP_682186 - hypothetical protein RD1_1889;Dbxref=Genbank:YP_001533569.1,GeneID:5713885;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533569.1;transl_table=11
NC_009952.1	RefSeq	gene	2355488	2357302	.	-	.	ID=gene2267;Name=phbC;Dbxref=GeneID:5713886;gbkey=Gene;gene=phbC;locus_tag=Dshi_2233
NC_009952.1	RefSeq	CDS	2355488	2357302	.	-	0	ID=cds2227;Name=YP_001533570.1;Parent=gene2267;Note=Swiss-Prot: P50176 - Poly-beta-hydroxybutyrate polymerase TIGRFAM: poly%28R%29-hydroxyalkanoic acid synthase%2C class I PFAM: Poly-beta-hydroxybutyrate polymerase domain protein KEGG: rsh:Rsph17029_2036 poly%28R%29-hydroxyalkanoic acid synthase%2C class I;Dbxref=Genbank:YP_001533570.1,GeneID:5713886;gbkey=CDS;gene=phbC;product=poly-beta-hydroxybutyrate polymerase;protein_id=YP_001533570.1;transl_table=11
NC_009952.1	RefSeq	gene	2357406	2358683	.	+	.	ID=gene2268;Name=Dshi_2234;Dbxref=GeneID:5713887;gbkey=Gene;locus_tag=Dshi_2234
NC_009952.1	RefSeq	CDS	2357406	2358683	.	+	0	ID=cds2228;Name=YP_001533571.1;Parent=gene2268;Note=TIGRFAM: polyhydroxyalkanoate depolymerase%2C intracellular PFAM: PHB de-polymerase domain protein KEGG: sil:SPO1291 polyhydroxyalkanoate depolymerase%2C intracellular%3B intracellular;Dbxref=Genbank:YP_001533571.1,GeneID:5713887;gbkey=CDS;product=putative polyhydroxyalkanoate depolymerase;protein_id=YP_001533571.1;transl_table=11
NC_009952.1	RefSeq	gene	2358775	2359911	.	-	.	ID=gene2269;Name=Dshi_2235;Dbxref=GeneID:5713888;gbkey=Gene;locus_tag=Dshi_2235
NC_009952.1	RefSeq	CDS	2358775	2359911	.	-	0	ID=cds2229;Name=YP_001533572.1;Parent=gene2269;Note=COG0620: Methionine synthase II %28cobalamin-independent%29 PFAM: Methionine synthase vitamin-B12 independent KEGG: jan:Jann_1114 methionine synthase%2C vitamin-B12 independent;Dbxref=Genbank:YP_001533572.1,GeneID:5713888;gbkey=CDS;product=putative methionine synthase vitamin-B12 independent;protein_id=YP_001533572.1;transl_table=11
NC_009952.1	RefSeq	gene	2359966	2360964	.	-	.	ID=gene2270;Name=Dshi_2236;Dbxref=GeneID:5713889;gbkey=Gene;locus_tag=Dshi_2236
NC_009952.1	RefSeq	CDS	2359966	2360964	.	-	0	ID=cds2230;Name=YP_001533573.1;Parent=gene2270;Dbxref=Genbank:YP_001533573.1,GeneID:5713889;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533573.1;transl_table=11
NC_009952.1	RefSeq	gene	2361020	2362003	.	-	.	ID=gene2271;Name=Dshi_2237;Dbxref=GeneID:5713890;gbkey=Gene;locus_tag=Dshi_2237
NC_009952.1	RefSeq	CDS	2361020	2362003	.	-	0	ID=cds2231;Name=YP_001533574.1;Parent=gene2271;Note=PFAM: protein of unknown function DUF1486 KEGG: rde:RD1_3943 hypothetical protein;Dbxref=Genbank:YP_001533574.1,GeneID:5713890;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533574.1;transl_table=11
NC_009952.1	RefSeq	gene	2361990	2363024	.	-	.	ID=gene2272;Name=Dshi_2238;Dbxref=GeneID:5713891;gbkey=Gene;locus_tag=Dshi_2238
NC_009952.1	RefSeq	CDS	2361990	2363024	.	-	0	ID=cds2232;Name=YP_001533575.1;Parent=gene2272;Note=Swiss-Prot: P0ACP7-HTH-type transcriptional repressor purR KEGG: rde:RD1_3944 transcriptional regulatory protein%2C LacI family%2C putative PFAM: periplasmic binding protein%2FLacI transcriptional regulator SMART: regulatory protein LacI%3B LacI family;Dbxref=Genbank:YP_001533575.1,GeneID:5713891;gbkey=CDS;product=transcriptional regulator;protein_id=YP_001533575.1;transl_table=11
NC_009952.1	RefSeq	gene	2363027	2363779	.	-	.	ID=gene2273;Name=Dshi_2239;Dbxref=GeneID:5713892;gbkey=Gene;locus_tag=Dshi_2239
NC_009952.1	RefSeq	CDS	2363027	2363779	.	-	0	ID=cds2233;Name=YP_001533576.1;Parent=gene2273;Note=Swiss-Prot: P50199 Gluconate 5-dehydrogenase %28SDR family protein%29 PFAM: short-chain dehydrogenase%2Freductase SDR%3B KR domain protein KEGG: jan:Jann_1106 short-chain dehydrogenase%2Freductase SDR;Dbxref=Genbank:YP_001533576.1,GeneID:5713892;gbkey=CDS;product=short-chain dehydrogenase%2Freductase SDR;protein_id=YP_001533576.1;transl_table=11
NC_009952.1	RefSeq	gene	2363849	2364484	.	-	.	ID=gene2274;Name=Dshi_2240;Dbxref=GeneID:5713893;gbkey=Gene;locus_tag=Dshi_2240
NC_009952.1	RefSeq	CDS	2363849	2364484	.	-	0	ID=cds2234;Name=YP_001533577.1;Parent=gene2274;Dbxref=Genbank:YP_001533577.1,GeneID:5713893;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533577.1;transl_table=11
NC_009952.1	RefSeq	gene	2364498	2365532	.	-	.	ID=gene2275;Name=Dshi_2241;Dbxref=GeneID:5713894;gbkey=Gene;locus_tag=Dshi_2241
NC_009952.1	RefSeq	CDS	2364498	2365532	.	-	0	ID=cds2235;Name=YP_001533578.1;Parent=gene2275;Note=PFAM: protein of unknown function DUF1486 KEGG: rde:RD1_3946 hypothetical protein;Dbxref=Genbank:YP_001533578.1,GeneID:5713894;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533578.1;transl_table=11
NC_009952.1	RefSeq	gene	2365495	2366820	.	-	.	ID=gene2276;Name=hisD3;Dbxref=GeneID:5713895;gbkey=Gene;gene=hisD3;locus_tag=Dshi_2242
NC_009952.1	RefSeq	CDS	2365495	2366820	.	-	0	ID=cds2236;Name=YP_001533579.1;Parent=gene2276;Note=catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis%3B functions as a dimer;Dbxref=Genbank:YP_001533579.1,GeneID:5713895;gbkey=CDS;gene=hisD3;product=histidinol dehydrogenase;protein_id=YP_001533579.1;transl_table=11
NC_009952.1	RefSeq	gene	2366910	2367665	.	-	.	ID=gene2277;Name=Dshi_2243;Dbxref=GeneID:5713896;gbkey=Gene;locus_tag=Dshi_2243
NC_009952.1	RefSeq	CDS	2366910	2367665	.	-	0	ID=cds2237;Name=YP_001533580.1;Parent=gene2277;Note=PFAM: alpha%2Fbeta hydrolase fold KEGG: rsp:RSP_0384 hypothetical protein;Dbxref=Genbank:YP_001533580.1,GeneID:5713896;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533580.1;transl_table=11
NC_009952.1	RefSeq	gene	2367721	2368161	.	-	.	ID=gene2278;Name=Dshi_2244;Dbxref=GeneID:5713897;gbkey=Gene;locus_tag=Dshi_2244
NC_009952.1	RefSeq	CDS	2367721	2368161	.	-	0	ID=cds2238;Name=YP_001533581.1;Parent=gene2278;Note=PFAM: protein of unknown function DUF1052 KEGG: jan:Jann_3406 protein of unknown function DUF1052;Dbxref=Genbank:YP_001533581.1,GeneID:5713897;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533581.1;transl_table=11
NC_009952.1	RefSeq	gene	2368423	2368770	.	-	.	ID=gene2279;Name=Dshi_2245;Dbxref=GeneID:5713898;gbkey=Gene;locus_tag=Dshi_2245
NC_009952.1	RefSeq	CDS	2368423	2368770	.	-	0	ID=cds2239;Name=YP_001533582.1;Parent=gene2279;Note=KEGG: rsq:Rsph17025_0423 hypothetical protein;Dbxref=Genbank:YP_001533582.1,GeneID:5713898;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533582.1;transl_table=11
NC_009952.1	RefSeq	gene	2369013	2369543	.	-	.	ID=gene2280;Name=Dshi_2246;Dbxref=GeneID:5713899;gbkey=Gene;locus_tag=Dshi_2246
NC_009952.1	RefSeq	CDS	2369013	2369543	.	-	0	ID=cds2240;Name=YP_001533583.1;Parent=gene2280;Note=COG3335: Transposase and inactivated derivatives PFAM: Integrase core domain%3B related to transposase and inactivated derivatives;Dbxref=Genbank:YP_001533583.1,GeneID:5713899;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533583.1;transl_table=11
NC_009952.1	RefSeq	gene	2369605	2369967	.	-	.	ID=gene2281;Name=Dshi_2247;Dbxref=GeneID:5713900;gbkey=Gene;locus_tag=Dshi_2247
NC_009952.1	RefSeq	CDS	2369605	2369967	.	-	0	ID=cds2241;Name=YP_001533584.1;Parent=gene2281;Note=COG3415 Transposase and inactivated derivatives%3B related to transposase and inactivated derivatives;Dbxref=Genbank:YP_001533584.1,GeneID:5713900;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533584.1;transl_table=11
NC_009952.1	RefSeq	gene	2370080	2370526	.	+	.	ID=gene2282;Name=Dshi_2248;Dbxref=GeneID:5713901;gbkey=Gene;locus_tag=Dshi_2248
NC_009952.1	RefSeq	CDS	2370080	2370526	.	+	0	ID=cds2242;Name=YP_001533585.1;Parent=gene2282;Dbxref=Genbank:YP_001533585.1,GeneID:5713901;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533585.1;transl_table=11
NC_009952.1	RefSeq	gene	2370535	2371014	.	-	.	ID=gene2283;Name=nusB;Dbxref=GeneID:5713902;gbkey=Gene;gene=nusB;locus_tag=Dshi_2249
NC_009952.1	RefSeq	CDS	2370535	2371014	.	-	0	ID=cds2243;Name=YP_001533586.1;Parent=gene2283;Note=Swiss-Prot: Q0APG4-N utilization substance protein B homolog TIGRFAM: transcription antitermination factor NusB PFAM: NusB%2FRsmB%2FTIM44;Dbxref=Genbank:YP_001533586.1,GeneID:5713902;gbkey=CDS;gene=nusB;product=N utilization substance protein B-like protein;protein_id=YP_001533586.1;transl_table=11
NC_009952.1	RefSeq	gene	2371011	2371562	.	-	.	ID=gene2284;Name=ribH;Dbxref=GeneID:5713903;gbkey=Gene;gene=ribH;locus_tag=Dshi_2250
NC_009952.1	RefSeq	CDS	2371011	2371562	.	-	0	ID=cds2244;Name=YP_001533587.1;Parent=gene2284;Note=RibE%3B 6%2C7-diimethyl-8-ribityllumazine synthase%3B DMRL synthase%3B lumazine synthase%3B beta subunit of riboflavin synthase%3B condenses 5-amino-6-%281%27-D%29-ribityl-amino-2%2C4%281H%2C3H%29-pyrimidinedione with L-3%2C4-dihydrohy-2-butanone-4-phosphate to generate 6%2C6-dimethyl-8-lumazine %28DMRL%29%3B riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin %28vitamin B12%29%3B involved in the last steps of riboflavin biosynthesis%3B forms a 60mer %28icosahedral shell%29 in both Bacillus subtilis and Escherichia coli%3B in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit %28alpha%29 while in Escherichia coli it is not;Dbxref=Genbank:YP_001533587.1,GeneID:5713903;gbkey=CDS;gene=ribH;product=6%2C7-dimethyl-8-ribityllumazine synthase;protein_id=YP_001533587.1;transl_table=11
NC_009952.1	RefSeq	gene	2371565	2372680	.	-	.	ID=gene2285;Name=ribB;Dbxref=GeneID:5713904;gbkey=Gene;gene=ribB;locus_tag=Dshi_2251
NC_009952.1	RefSeq	CDS	2371565	2372680	.	-	0	ID=cds2245;Name=YP_001533588.1;Parent=gene2285;Note=Swiss-Prot: P0A7J0 3%2C4-dihydroxy-2-butanone 4-phosphate synthase %28DHBP synthase%29 TIGRFAM: 3%2C4-dihydroxy-2-butanone 4-phosphate synthase PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase%3B GTP cyclohydrolase II;Dbxref=Genbank:YP_001533588.1,GeneID:5713904;gbkey=CDS;gene=ribB;product=3%2C4-dihydroxy-2-butanone 4-phosphate synthase;protein_id=YP_001533588.1;transl_table=11
NC_009952.1	RefSeq	gene	2372819	2373421	.	-	.	ID=gene2286;Name=ribC;Dbxref=GeneID:5713905;gbkey=Gene;gene=ribC;locus_tag=Dshi_2252
NC_009952.1	RefSeq	CDS	2372819	2373421	.	-	0	ID=cds2246;Name=YP_001533589.1;Parent=gene2286;Note=catalyzes the formation of riboflavin from 6%2C7-dimethyl-8-%281-D-ribityl%29lumazine;Dbxref=Genbank:YP_001533589.1,GeneID:5713905;gbkey=CDS;gene=ribC;product=riboflavin synthase subunit alpha;protein_id=YP_001533589.1;transl_table=11
NC_009952.1	RefSeq	gene	2373608	2374894	.	+	.	ID=gene2287;Name=Dshi_2253;Dbxref=GeneID:5713906;gbkey=Gene;locus_tag=Dshi_2253
NC_009952.1	RefSeq	CDS	2373608	2374894	.	+	0	ID=cds2247;Name=YP_001533590.1;Parent=gene2287;Note=Swiss-Prot: P42218 - Capsule polysaccharide export protein kpsS PFAM: Capsule polysaccharide biosynthesis protein KEGG: jan:Jann_3418 capsule polysaccharide biosynthesis;Dbxref=Genbank:YP_001533590.1,GeneID:5713906;gbkey=CDS;product=putative capsule polysaccharide export protein;protein_id=YP_001533590.1;transl_table=11
NC_009952.1	RefSeq	gene	2375007	2376164	.	+	.	ID=gene2288;Name=Dshi_2254;Dbxref=GeneID:5713907;gbkey=Gene;locus_tag=Dshi_2254
NC_009952.1	RefSeq	CDS	2375007	2376164	.	+	0	ID=cds2248;Name=YP_001533591.1;Parent=gene2288;Note=Swiss-Prot: P0A932 - Putative polysaccharide export protein yccZ %5BPrecursor%5D PFAM: polysaccharide export protein KEGG: sil:SPO1756 polysaccharide biosynthesis%2Fexport protein;Dbxref=Genbank:YP_001533591.1,GeneID:5713907;gbkey=CDS;product=putative polysaccharide export protein;protein_id=YP_001533591.1;transl_table=11
NC_009952.1	RefSeq	gene	2376242	2378218	.	+	.	ID=gene2289;Name=Dshi_2255;Dbxref=GeneID:5713908;gbkey=Gene;locus_tag=Dshi_2255
NC_009952.1	RefSeq	CDS	2376242	2378218	.	+	0	ID=cds2249;Name=YP_001533592.1;Parent=gene2289;Note=Swiss-Prot: P42217 - Capsule polysaccharide export protein kpsC PFAM: Capsule polysaccharide biosynthesis protein KEGG: sil:SPO1755 capsular polysaccharide export protein KpsC;Dbxref=Genbank:YP_001533592.1,GeneID:5713908;gbkey=CDS;product=putative capsule polysaccharide export protein;protein_id=YP_001533592.1;transl_table=11
NC_009952.1	RefSeq	gene	2378215	2379312	.	-	.	ID=gene2290;Name=ribD;Dbxref=GeneID:5713909;gbkey=Gene;gene=ribD;locus_tag=Dshi_2256
NC_009952.1	RefSeq	CDS	2378215	2379312	.	-	0	ID=cds2250;Name=YP_001533593.1;Parent=gene2290;Note=Swiss-Prot: P25539 - Riboflavin biosynthesis protein ribD %28includes: EC:1.1.1.193 - 5-amino-6-%285-phosphoribosylamino%29uracil reductase EC:3.5.4.26 - Diaminohydroxyphosphoribosylaminopyrimidine deaminase%29 TIGRFAM: riboflavin biosynthesis protein RibD;Dbxref=Genbank:YP_001533593.1,GeneID:5713909;gbkey=CDS;gene=ribD;product=riboflavin biosynthesis protein;protein_id=YP_001533593.1;transl_table=11
NC_009952.1	RefSeq	gene	2379314	2379781	.	-	.	ID=gene2291;Name=nrdR;Dbxref=GeneID:5713910;gbkey=Gene;gene=nrdR;locus_tag=Dshi_2257
NC_009952.1	RefSeq	CDS	2379314	2379781	.	-	0	ID=cds2251;Name=YP_001533594.1;Parent=gene2291;Note=Swiss-Prot: Q1GEP8 and P0A8D0 - Transcriptional repressor nrdR PFAM: ATP-cone domain protein KEGG: rsq:Rsph17025_0843 ATP-cone domain protein;Dbxref=Genbank:YP_001533594.1,GeneID:5713910;gbkey=CDS;gene=nrdR;product=transcriptional regulator NrdR;protein_id=YP_001533594.1;transl_table=11
NC_009952.1	RefSeq	gene	2379941	2380360	.	-	.	ID=gene2292;Name=Dshi_2258;Dbxref=GeneID:5713911;gbkey=Gene;locus_tag=Dshi_2258
NC_009952.1	RefSeq	CDS	2379941	2380360	.	-	0	ID=cds2252;Name=YP_001533595.1;Parent=gene2292;Note=PFAM: protein of unknown function UPF0047 KEGG: sit:TM1040_2137 protein of unknown function UPF0047;Dbxref=Genbank:YP_001533595.1,GeneID:5713911;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533595.1;transl_table=11
NC_009952.1	RefSeq	gene	2380410	2380916	.	-	.	ID=gene2293;Name=Dshi_2259;Dbxref=GeneID:5713912;gbkey=Gene;locus_tag=Dshi_2259
NC_009952.1	RefSeq	CDS	2380410	2380916	.	-	0	ID=cds2253;Name=YP_001533596.1;Parent=gene2293;Dbxref=Genbank:YP_001533596.1,GeneID:5713912;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533596.1;transl_table=11
NC_009952.1	RefSeq	gene	2381127	2381549	.	-	.	ID=gene2294;Name=Dshi_2260;Dbxref=GeneID:5713913;gbkey=Gene;locus_tag=Dshi_2260
NC_009952.1	RefSeq	CDS	2381127	2381549	.	-	0	ID=cds2254;Name=YP_001533597.1;Parent=gene2294;Dbxref=Genbank:YP_001533597.1,GeneID:5713913;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533597.1;transl_table=11
NC_009952.1	RefSeq	gene	2381601	2383595	.	-	.	ID=gene2295;Name=rpoD;Dbxref=GeneID:5713914;gbkey=Gene;gene=rpoD;locus_tag=Dshi_2261
NC_009952.1	RefSeq	CDS	2381601	2383595	.	-	0	ID=cds2255;Name=YP_001533598.1;Parent=gene2295;Note=sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released%3B this is the primary sigma factor of bacteria;Dbxref=Genbank:YP_001533598.1,GeneID:5713914;gbkey=CDS;gene=rpoD;product=RNA polymerase sigma factor RpoD;protein_id=YP_001533598.1;transl_table=11
NC_009952.1	RefSeq	gene	2383717	2385669	.	-	.	ID=gene2296;Name=dnaG;Dbxref=GeneID:5713915;gbkey=Gene;gene=dnaG;locus_tag=Dshi_2262
NC_009952.1	RefSeq	CDS	2383717	2385669	.	-	0	ID=cds2256;Name=YP_001533599.1;Parent=gene2296;Note=synthesizes RNA primers at the replication forks;Dbxref=Genbank:YP_001533599.1,GeneID:5713915;gbkey=CDS;gene=dnaG;product=DNA primase;protein_id=YP_001533599.1;transl_table=11
NC_009952.1	RefSeq	gene	2385725	2386303	.	-	.	ID=gene2297;Name=Dshi_2263;Dbxref=GeneID:5713916;gbkey=Gene;locus_tag=Dshi_2263
NC_009952.1	RefSeq	CDS	2385725	2386303	.	-	0	ID=cds2257;Name=YP_001533600.1;Parent=gene2297;Note=Swiss-Prot: Q46338 - Sarcosine oxidase subunit gamma TIGR01375%23 sarcosine oxidase%2C gamma subunit family%2C heterotetrameric form%3B gamma subunit;Dbxref=Genbank:YP_001533600.1,GeneID:5713916;gbkey=CDS;product=putative sarcosine oxidase;protein_id=YP_001533600.1;transl_table=11
NC_009952.1	RefSeq	gene	2386296	2389238	.	-	.	ID=gene2298;Name=Dshi_2264;Dbxref=GeneID:5713917;gbkey=Gene;locus_tag=Dshi_2264
NC_009952.1	RefSeq	CDS	2386296	2389238	.	-	0	ID=cds2258;Name=YP_001533601.1;Parent=gene2298;Note=TIGRFAM: sarcosine oxidase%2C alpha subunit family %28TIGR01372%29 Swiss-Prot: O87386 - Sarcosine oxidase subunit alpha PFAM: glycine cleavage T protein %28aminomethyl transferase%29%3B FAD-dependent pyridine nucleotide-disulphide oxidoreductase%3B Glycine cleavage T-protein barrel%3B alpha subunit family;Dbxref=Genbank:YP_001533601.1,GeneID:5713917;gbkey=CDS;product=putative sarcosine oxidase;protein_id=YP_001533601.1;transl_table=11
NC_009952.1	RefSeq	gene	2389235	2389498	.	-	.	ID=gene2299;Name=Dshi_2265;Dbxref=GeneID:5713918;gbkey=Gene;locus_tag=Dshi_2265
NC_009952.1	RefSeq	CDS	2389235	2389498	.	-	0	ID=cds2259;Name=YP_001533602.1;Parent=gene2299;Note=Swiss-Prot: O87387 - Sarcosine oxidase subunit delta PFAM: Sarcosine oxidase delta subunit heterotetrameric KEGG: sil:SPO1745 sarcosine oxidase%2C delta subunit family%3B delta subunit heterotetrameric;Dbxref=Genbank:YP_001533602.1,GeneID:5713918;gbkey=CDS;product=putative sarcosine oxidase;protein_id=YP_001533602.1;transl_table=11
NC_009952.1	RefSeq	gene	2389926	2391176	.	-	.	ID=gene2300;Name=Dshi_2266;Dbxref=GeneID:5713919;gbkey=Gene;locus_tag=Dshi_2266
NC_009952.1	RefSeq	CDS	2389926	2391176	.	-	0	ID=cds2260;Name=YP_001533603.1;Parent=gene2300;Note=Swiss-Prot: O87388 - Sarcosine oxidase subunit beta TIGRFAM: sarcosine oxidase%2C beta subunit family PFAM: FAD dependent oxidoreductase KEGG: jan:Jann_3445 sarcosine oxidase%2C beta subunit family;Dbxref=Genbank:YP_001533603.1,GeneID:5713919;gbkey=CDS;product=putative sarcosine oxidase subunit beta;protein_id=YP_001533603.1;transl_table=11
NC_009952.1	RefSeq	gene	2391484	2393145	.	+	.	ID=gene2301;Name=Dshi_2267;Dbxref=GeneID:5713920;gbkey=Gene;locus_tag=Dshi_2267
NC_009952.1	RefSeq	CDS	2391484	2393145	.	+	0	ID=cds2261;Name=YP_001533604.1;Parent=gene2301;Note=IPR002035: von Willebrand factor%2C type A;Dbxref=Genbank:YP_001533604.1,GeneID:5713920;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533604.1;transl_table=11
NC_009952.1	RefSeq	gene	2393142	2393666	.	+	.	ID=gene2302;Name=Dshi_2268;Dbxref=GeneID:5713921;gbkey=Gene;locus_tag=Dshi_2268
NC_009952.1	RefSeq	CDS	2393142	2393666	.	+	0	ID=cds2262;Name=YP_001533605.1;Parent=gene2302;Note=PFAM: TadE family protein KEGG: rsh:Rsph17029_2053 hypothetical protein%3B associated with TadE-like protein family;Dbxref=Genbank:YP_001533605.1,GeneID:5713921;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533605.1;transl_table=11
NC_009952.1	RefSeq	gene	2393676	2394230	.	+	.	ID=gene2303;Name=Dshi_2269;Dbxref=GeneID:5713922;gbkey=Gene;locus_tag=Dshi_2269
NC_009952.1	RefSeq	CDS	2393676	2394230	.	+	0	ID=cds2263;Name=YP_001533606.1;Parent=gene2303;Note=KEGG: rde:RD1_2616 hypothetical protein;Dbxref=Genbank:YP_001533606.1,GeneID:5713922;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533606.1;transl_table=11
NC_009952.1	RefSeq	gene	2394227	2394736	.	-	.	ID=gene2304;Name=Dshi_2270;Dbxref=GeneID:5713923;gbkey=Gene;locus_tag=Dshi_2270
NC_009952.1	RefSeq	CDS	2394227	2394736	.	-	0	ID=cds2264;Name=YP_001533607.1;Parent=gene2304;Note=KEGG: sil:SPO1739 hypothetical protein;Dbxref=Genbank:YP_001533607.1,GeneID:5713923;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533607.1;transl_table=11
NC_009952.1	RefSeq	gene	2394736	2395365	.	-	.	ID=gene2305;Name=Dshi_2271;Dbxref=GeneID:5713924;gbkey=Gene;locus_tag=Dshi_2271
NC_009952.1	RefSeq	CDS	2394736	2395365	.	-	0	ID=cds2265;Name=YP_001533608.1;Parent=gene2305;Note=PFAM: regulatory protein TetR KEGG: rsq:Rsph17025_0835 transcriptional regulator%2C TetR family%3B TetR-related;Dbxref=Genbank:YP_001533608.1,GeneID:5713924;gbkey=CDS;product=transcriptional regulator;protein_id=YP_001533608.1;transl_table=11
NC_009952.1	RefSeq	gene	2395380	2395685	.	+	.	ID=gene2306;Name=Dshi_2272;Dbxref=GeneID:5713925;gbkey=Gene;locus_tag=Dshi_2272
NC_009952.1	RefSeq	CDS	2395380	2395685	.	+	0	ID=cds2266;Name=YP_001533609.1;Parent=gene2306;Dbxref=Genbank:YP_001533609.1,GeneID:5713925;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533609.1;transl_table=11
NC_009952.1	RefSeq	gene	2395765	2397051	.	+	.	ID=gene2307;Name=Dshi_2273;Dbxref=GeneID:5713926;gbkey=Gene;locus_tag=Dshi_2273
NC_009952.1	RefSeq	CDS	2395765	2397051	.	+	0	ID=cds2267;Name=YP_001533610.1;Parent=gene2307;Note=catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine;Dbxref=Genbank:YP_001533610.1,GeneID:5713926;gbkey=CDS;product=homoserine dehydrogenase;protein_id=YP_001533610.1;transl_table=11
NC_009952.1	RefSeq	gene	2397177	2398148	.	+	.	ID=gene2308;Name=glpX;Dbxref=GeneID:5713927;gbkey=Gene;gene=glpX;locus_tag=Dshi_2274
NC_009952.1	RefSeq	CDS	2397177	2398148	.	+	0	ID=cds2268;Name=YP_001533611.1;Parent=gene2308;Note=type II fructose 1%2C6-bisphosphatae%3B in Escherichia coli this protein forms a dimer and binds manganese;Dbxref=Genbank:YP_001533611.1,GeneID:5713927;gbkey=CDS;gene=glpX;product=fructose 1%2C6-bisphosphatase II;protein_id=YP_001533611.1;transl_table=11
NC_009952.1	RefSeq	gene	2398150	2399907	.	+	.	ID=gene2309;Name=recJ;Dbxref=GeneID:5713928;gbkey=Gene;gene=recJ;locus_tag=Dshi_2275
NC_009952.1	RefSeq	CDS	2398150	2399907	.	+	0	ID=cds2269;Name=YP_001533612.1;Parent=gene2309;Note=Swiss-Prot: P21893 - Single-stranded-DNA-specific exonuclease recJ TIGRFAM: single-stranded-DNA-specific exonuclease RecJ PFAM: phosphoesterase RecJ domain protein%3B phosphoesterase DHHA1 KEGG: sit:TM1040_2166 single-stranded-DNA-specific exonuclease RecJ;Dbxref=Genbank:YP_001533612.1,GeneID:5713928;gbkey=CDS;gene=recJ;product=single-stranded-DNA-specific exonuclease;protein_id=YP_001533612.1;transl_table=11
NC_009952.1	RefSeq	gene	2399989	2400063	.	+	.	ID=gene2310;Name=Dshi_6041;Dbxref=GeneID:5713929;gbkey=Gene;locus_tag=Dshi_6041
NC_009952.1	RefSeq	tRNA	2399989	2400063	.	+	.	ID=rna40;Parent=gene2310;Dbxref=GeneID:5713929;codons=58;gbkey=tRNA;product=tRNA-Glu
NC_009952.1	RefSeq	exon	2399989	2400063	.	+	.	ID=id44;Parent=rna40;Dbxref=GeneID:5713929;codons=58;gbkey=tRNA;product=tRNA-Glu
NC_009952.1	RefSeq	gene	2400364	2400894	.	-	.	ID=gene2311;Name=Dshi_2276;Dbxref=GeneID:5713930;gbkey=Gene;locus_tag=Dshi_2276
NC_009952.1	RefSeq	CDS	2400364	2400894	.	-	0	ID=cds2270;Name=YP_001533613.1;Parent=gene2311;Dbxref=Genbank:YP_001533613.1,GeneID:5713930;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533613.1;transl_table=11
NC_009952.1	RefSeq	gene	2400891	2402162	.	-	.	ID=gene2312;Name=moeA2;Dbxref=GeneID:5713931;gbkey=Gene;gene=moeA2;locus_tag=Dshi_2277
NC_009952.1	RefSeq	CDS	2400891	2402162	.	-	0	ID=cds2271;Name=YP_001533614.1;Parent=gene2312;Note=Swiss-Prot: P12281 - Molybdopterin biosynthesis protein TIGRFAM: molybdenum cofactor synthesis domain PFAM: molybdopterin binding domain%3B MoeA domain protein domain I and II%3B MoeA domain protein domain IV;Dbxref=Genbank:YP_001533614.1,GeneID:5713931;gbkey=CDS;gene=moeA2;product=molybdopterin biosynthesis protein;protein_id=YP_001533614.1;transl_table=11
NC_009952.1	RefSeq	gene	2402247	2404919	.	-	.	ID=gene2313;Name=dmsA1;Dbxref=GeneID:5713932;gbkey=Gene;gene=dmsA1;locus_tag=Dshi_2278
NC_009952.1	RefSeq	CDS	2402247	2404919	.	-	0	ID=cds2272;Name=YP_001533615.1;Parent=gene2313;Note=Swiss-Prot: Q57366 - Dimethyl sulfoxide reductase %5BPrecursor%5D PFAM: molybdopterin oxidoreductase%3B molydopterin dinucleotide-binding region KEGG: rde:RD1_3664 dimethyl sulfoxide reductase;Dbxref=Genbank:YP_001533615.1,GeneID:5713932;gbkey=CDS;gene=dmsA1;product=dimethyl sulfoxide reductase;protein_id=YP_001533615.1;transl_table=11
NC_009952.1	RefSeq	gene	2405034	2405738	.	+	.	ID=gene2314;Name=Dshi_2279;Dbxref=GeneID:5713933;gbkey=Gene;locus_tag=Dshi_2279
NC_009952.1	RefSeq	CDS	2405034	2405738	.	+	0	ID=cds2273;Name=YP_001533616.1;Parent=gene2314;Note=differing Swiss-Prot hits: P0A9Q1-Aerobic respiration control protein arcA%3B P0AA16-Transcriptional regulatory protein ompR%3B P38684-TorCAD operon transcriptional regulatory protein torR%3B putative arcA%2C ompR or torR protein;Dbxref=Genbank:YP_001533616.1,GeneID:5713933;gbkey=CDS;product=two component transcriptional regulator;protein_id=YP_001533616.1;transl_table=11
NC_009952.1	RefSeq	gene	2405708	2408494	.	-	.	ID=gene2315;Name=Dshi_2280;Dbxref=GeneID:5713934;gbkey=Gene;locus_tag=Dshi_2280
NC_009952.1	RefSeq	CDS	2405708	2408494	.	-	0	ID=cds2274;Name=YP_001533617.1;Parent=gene2315;Note=differing Swiss-Prot hits: P0AEC3-Aerobic respiration control sensor protein arcB P39453-Sensor protein torS PFAM: response regulator receiver%3B ATP-binding region ATPase domain protein%3B histidine kinase HAMP region domain protein%3B histidine kinase A domain protein%3B Hpt domain protein;Dbxref=Genbank:YP_001533617.1,GeneID:5713934;gbkey=CDS;product=signal transduction histidine kinase;protein_id=YP_001533617.1;transl_table=11
NC_009952.1	RefSeq	gene	2408517	2409482	.	+	.	ID=gene2316;Name=Dshi_2281;Dbxref=GeneID:5713935;gbkey=Gene;locus_tag=Dshi_2281
NC_009952.1	RefSeq	CDS	2408517	2409482	.	+	0	ID=cds2275;Name=YP_001533618.1;Parent=gene2316;Note=periplasmic sensory protein associated with the TorRS two-component regulatory system;Dbxref=Genbank:YP_001533618.1,GeneID:5713935;gbkey=CDS;product=TMAO reductase system periplasmic protein TorT;protein_id=YP_001533618.1;transl_table=11
NC_009952.1	RefSeq	gene	2409776	2410660	.	+	.	ID=gene2317;Name=Dshi_2282;Dbxref=GeneID:5713936;gbkey=Gene;locus_tag=Dshi_2282
NC_009952.1	RefSeq	CDS	2409776	2410660	.	+	0	ID=cds2276;Name=YP_001533619.1;Parent=gene2317;Note=PFAM: helix-turn-helix- domain containing protein AraC type COG4977: Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain KEGG: mva:Mvan_3996 helix-turn-helix-domain containing protein%2C AraC type%3B AraC family;Dbxref=Genbank:YP_001533619.1,GeneID:5713936;gbkey=CDS;product=putative transcriptional regulator;protein_id=YP_001533619.1;transl_table=11
NC_009952.1	RefSeq	gene	2410872	2412536	.	+	.	ID=gene2318;Name=pamO;Dbxref=GeneID:5713937;gbkey=Gene;gene=pamO;locus_tag=Dshi_2283
NC_009952.1	RefSeq	CDS	2410872	2412536	.	+	0	ID=cds2277;Name=YP_001533620.1;Parent=gene2318;Note=Swiss-Prot: Q47PU3-Phenylacetone monooxygenase pfam00743: Flavin-binding monooxygenase-like KEGG: rha:RHA1_ro08185 monooxygenase;Dbxref=Genbank:YP_001533620.1,GeneID:5713937;gbkey=CDS;gene=pamO;product=phenylacetone monooxygenase;protein_id=YP_001533620.1;transl_table=11
NC_009952.1	RefSeq	gene	2412606	2413793	.	+	.	ID=gene2319;Name=Dshi_2284;Dbxref=GeneID:5713938;gbkey=Gene;locus_tag=Dshi_2284
NC_009952.1	RefSeq	CDS	2412606	2413793	.	+	0	ID=cds2278;Name=YP_001533621.1;Parent=gene2319;Note=Swiss-Prot: Q11037-Uncharacterized protein Rv1367c%2FMT1414 PFAM: beta-lactamase COG1680: Beta-lactamase class C and other penicillin binding proteins%3B related to beta-lactamase;Dbxref=Genbank:YP_001533621.1,GeneID:5713938;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533621.1;transl_table=11
NC_009952.1	RefSeq	gene	2413857	2414513	.	-	.	ID=gene2320;Name=Dshi_2285;Dbxref=GeneID:5713939;gbkey=Gene;locus_tag=Dshi_2285
NC_009952.1	RefSeq	CDS	2413857	2414513	.	-	0	ID=cds2279;Name=YP_001533622.1;Parent=gene2320;Dbxref=Genbank:YP_001533622.1,GeneID:5713939;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533622.1;transl_table=11
NC_009952.1	RefSeq	gene	2414815	2415318	.	+	.	ID=gene2321;Name=Dshi_2286;Dbxref=GeneID:5713940;gbkey=Gene;locus_tag=Dshi_2286
NC_009952.1	RefSeq	CDS	2414815	2415318	.	+	0	ID=cds2280;Name=YP_001533623.1;Parent=gene2321;Note=COG1846: Transcriptional regulators PFAM: regulatory protein MarR KEGG: reu:Reut_B5322 regulatory protein%2C MarR%3B associated with transcriptional regulators%2C marR family;Dbxref=Genbank:YP_001533623.1,GeneID:5713940;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533623.1;transl_table=11
NC_009952.1	RefSeq	gene	2415315	2417234	.	+	.	ID=gene2322;Name=Dshi_2287;Dbxref=GeneID:5713941;gbkey=Gene;locus_tag=Dshi_2287
NC_009952.1	RefSeq	CDS	2415315	2417234	.	+	0	ID=cds2281;Name=YP_001533624.1;Parent=gene2322;Note=TIGRFAM: TRAP transporter%2C 4TM%2F12TM fusion protein PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit KEGG: rde:RD1_3648 hypothetical protein%3B 4TM%2F12TM fusion protein;Dbxref=Genbank:YP_001533624.1,GeneID:5713941;gbkey=CDS;product=putative TRAP transporter;protein_id=YP_001533624.1;transl_table=11
NC_009952.1	RefSeq	gene	2417255	2418247	.	+	.	ID=gene2323;Name=Dshi_2288;Dbxref=GeneID:5713942;gbkey=Gene;locus_tag=Dshi_2288
NC_009952.1	RefSeq	CDS	2417255	2418247	.	+	0	ID=cds2282;Name=YP_001533625.1;Parent=gene2323;Note=TIGRFAM: TRAP transporter solute receptor%2C TAXI family KEGG: rde:RD1_3647 TRAP-type transporter%2C periplasmic component %2C putative%3B TAXI family;Dbxref=Genbank:YP_001533625.1,GeneID:5713942;gbkey=CDS;product=putative TRAP transporter solute receptor;protein_id=YP_001533625.1;transl_table=11
NC_009952.1	RefSeq	gene	2418278	2419648	.	+	.	ID=gene2324;Name=Dshi_2289;Dbxref=GeneID:5713943;gbkey=Gene;locus_tag=Dshi_2289
NC_009952.1	RefSeq	CDS	2418278	2419648	.	+	0	ID=cds2283;Name=YP_001533626.1;Parent=gene2324;Note=PFAM: amidohydrolase%3B Amidohydrolase 3 KEGG: slo:Shew_0983 amidohydrolase;Dbxref=Genbank:YP_001533626.1,GeneID:5713943;gbkey=CDS;product=amidohydrolase;protein_id=YP_001533626.1;transl_table=11
NC_009952.1	RefSeq	gene	2419657	2420955	.	+	.	ID=gene2325;Name=Dshi_2290;Dbxref=GeneID:5713944;gbkey=Gene;locus_tag=Dshi_2290
NC_009952.1	RefSeq	CDS	2419657	2420955	.	+	0	ID=cds2284;Name=YP_001533627.1;Parent=gene2325;Note=probably associated with sugar transport%3B PFAM: Carbohydrate-selective porin OprB KEGG: cps:CPS_0267 hypothetical protein;Dbxref=Genbank:YP_001533627.1,GeneID:5713944;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533627.1;transl_table=11
NC_009952.1	RefSeq	gene	2420989	2421627	.	+	.	ID=gene2326;Name=Dshi_2291;Dbxref=GeneID:5713945;gbkey=Gene;locus_tag=Dshi_2291
NC_009952.1	RefSeq	CDS	2420989	2421627	.	+	0	ID=cds2285;Name=YP_001533628.1;Parent=gene2326;Note=PFAM: protein of unknown function DUF306 Meta and HslJ;Dbxref=Genbank:YP_001533628.1,GeneID:5713945;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533628.1;transl_table=11
NC_009952.1	RefSeq	gene	2421771	2422820	.	-	.	ID=gene2327;Name=Dshi_2292;Dbxref=GeneID:5713946;gbkey=Gene;locus_tag=Dshi_2292
NC_009952.1	RefSeq	CDS	2421771	2422820	.	-	0	ID=cds2286;Name=YP_001533629.1;Parent=gene2327;Note=pfam05976: DUF893;Dbxref=Genbank:YP_001533629.1,GeneID:5713946;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533629.1;transl_table=11
NC_009952.1	RefSeq	gene	2422831	2423928	.	-	.	ID=gene2328;Name=Dshi_2293;Dbxref=GeneID:5713947;gbkey=Gene;locus_tag=Dshi_2293
NC_009952.1	RefSeq	CDS	2422831	2423928	.	-	0	ID=cds2287;Name=YP_001533630.1;Parent=gene2328;Note=PFAM: secretion protein HlyD family protein KEGG: rde:RD1_3593 multidrug resistance efflux pump%2C putative%3B HlyD family;Dbxref=Genbank:YP_001533630.1,GeneID:5713947;gbkey=CDS;product=secretion protein;protein_id=YP_001533630.1;transl_table=11
NC_009952.1	RefSeq	gene	2423982	2426291	.	-	.	ID=gene2329;Name=Dshi_2294;Dbxref=GeneID:5713948;gbkey=Gene;locus_tag=Dshi_2294
NC_009952.1	RefSeq	CDS	2423982	2426291	.	-	0	ID=cds2288;Name=YP_001533631.1;Parent=gene2329;Note=PFAM: Pyrrolo-quinoline quinone KEGG: pfl:PFL_5668 quinate%2Fshikimate dehydrogenase%2C putative COG4993: Glucose dehydrogenase;Dbxref=Genbank:YP_001533631.1,GeneID:5713948;gbkey=CDS;product=PQQ dehydrogenase family protein;protein_id=YP_001533631.1;transl_table=11
NC_009952.1	RefSeq	gene	2426408	2427880	.	-	.	ID=gene2330;Name=Dshi_2295;Dbxref=GeneID:5713949;gbkey=Gene;locus_tag=Dshi_2295
NC_009952.1	RefSeq	CDS	2426408	2427880	.	-	0	ID=cds2289;Name=YP_001533632.1;Parent=gene2330;Note=PFAM: amidohydrolase%3B Amidohydrolase 3 COG1228: Imidazolonepropionase and related amidohydrolases KEGG: sus:Acid_5787 amidohydrolase;Dbxref=Genbank:YP_001533632.1,GeneID:5713949;gbkey=CDS;product=putative amidohydrolase;protein_id=YP_001533632.1;transl_table=11
NC_009952.1	RefSeq	gene	2427999	2428427	.	-	.	ID=gene2331;Name=Dshi_2296;Dbxref=GeneID:5713950;gbkey=Gene;locus_tag=Dshi_2296
NC_009952.1	RefSeq	CDS	2427999	2428427	.	-	0	ID=cds2290;Name=YP_001533633.1;Parent=gene2331;Note=PFAM: transposase IS4 family protein COG3293: Transposase and inactivated derivatives KEGG: pde:Pden_3333 transposase%2C IS4 family protein;Dbxref=Genbank:YP_001533633.1,GeneID:5713950;gbkey=CDS;product=transposase;protein_id=YP_001533633.1;transl_table=11
NC_009952.1	RefSeq	gene	2428514	2428810	.	-	.	ID=gene2332;Name=Dshi_2297;Dbxref=GeneID:5713951;gbkey=Gene;locus_tag=Dshi_2297
NC_009952.1	RefSeq	CDS	2428514	2428810	.	-	0	ID=cds2291;Name=YP_001533634.1;Parent=gene2332;Note=COG3293: Transposase and inactivated derivatives KEGG: sit:TM1040_0173 transposase orfA IS5 family element%3B associated with replication%2C recombination and repair;Dbxref=Genbank:YP_001533634.1,GeneID:5713951;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533634.1;transl_table=11
NC_009952.1	RefSeq	gene	2429143	2430264	.	-	.	ID=gene2333;Name=Dshi_2298;Dbxref=GeneID:5713952;gbkey=Gene;locus_tag=Dshi_2298
NC_009952.1	RefSeq	CDS	2429143	2430264	.	-	0	ID=cds2292;Name=YP_001533635.1;Parent=gene2333;Note=COG3457: Predicted amino acid racemase PFAM: alanine racemase domain protein%2C N-terminal domain%3B no C-terminal domain;Dbxref=Genbank:YP_001533635.1,GeneID:5713952;gbkey=CDS;product=putative amino acid racemase;protein_id=YP_001533635.1;transl_table=11
NC_009952.1	RefSeq	gene	2430261	2431439	.	-	.	ID=gene2334;Name=Dshi_2299;Dbxref=GeneID:5713953;gbkey=Gene;locus_tag=Dshi_2299
NC_009952.1	RefSeq	CDS	2430261	2431439	.	-	0	ID=cds2293;Name=YP_001533636.1;Parent=gene2334;Note=IPR011669: protein of unknown function DUF1611;Dbxref=Genbank:YP_001533636.1,GeneID:5713953;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533636.1;transl_table=11
NC_009952.1	RefSeq	gene	2431492	2432319	.	-	.	ID=gene2335;Name=Dshi_2300;Dbxref=GeneID:5713954;gbkey=Gene;locus_tag=Dshi_2300
NC_009952.1	RefSeq	CDS	2431492	2432319	.	-	0	ID=cds2294;Name=YP_001533637.1;Parent=gene2335;Dbxref=Genbank:YP_001533637.1,GeneID:5713954;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533637.1;transl_table=11
NC_009952.1	RefSeq	gene	2432309	2432662	.	-	.	ID=gene2336;Name=Dshi_2301;Dbxref=GeneID:5713955;gbkey=Gene;locus_tag=Dshi_2301
NC_009952.1	RefSeq	CDS	2432309	2432662	.	-	0	ID=cds2295;Name=YP_001533638.1;Parent=gene2336;Dbxref=Genbank:YP_001533638.1,GeneID:5713955;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533638.1;transl_table=11
NC_009952.1	RefSeq	gene	2433069	2433371	.	-	.	ID=gene2337;Name=Dshi_2302;Dbxref=GeneID:5713956;gbkey=Gene;locus_tag=Dshi_2302
NC_009952.1	RefSeq	CDS	2433069	2433371	.	-	0	ID=cds2296;Name=YP_001533639.1;Parent=gene2337;Dbxref=Genbank:YP_001533639.1,GeneID:5713956;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533639.1;transl_table=11
NC_009952.1	RefSeq	gene	2433393	2434691	.	-	.	ID=gene2338;Name=Dshi_2303;Dbxref=GeneID:5713957;gbkey=Gene;locus_tag=Dshi_2303
NC_009952.1	RefSeq	CDS	2433393	2434691	.	-	0	ID=cds2297;Name=YP_001533640.1;Parent=gene2338;Note=PFAM: NnrS family protein COG3213: Uncharacterized protein involved in response to NO KEGG: rde:RD1_1694 NnrS protein%2C putative%3B associated with NO response;Dbxref=Genbank:YP_001533640.1,GeneID:5713957;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533640.1;transl_table=11
NC_009952.1	RefSeq	gene	2434878	2435366	.	-	.	ID=gene2339;Name=Dshi_2304;Dbxref=GeneID:5713958;gbkey=Gene;locus_tag=Dshi_2304
NC_009952.1	RefSeq	CDS	2434878	2435366	.	-	0	ID=cds2298;Name=YP_001533641.1;Parent=gene2339;Note=Swiss-Prot: P69506-Regulator of cell morphogenesis and NO signaling COG2846: Regulator of cell morphogenesis and NO signaling PFAM: Hemerythrin HHE cation binding domain protein;Dbxref=Genbank:YP_001533641.1,GeneID:5713958;gbkey=CDS;product=putative regulator of cell morphogenesis and NO signaling;protein_id=YP_001533641.1;transl_table=11
NC_009952.1	RefSeq	gene	2435382	2435837	.	-	.	ID=gene2340;Name=Dshi_2305;Dbxref=GeneID:5713959;gbkey=Gene;locus_tag=Dshi_2305
NC_009952.1	RefSeq	CDS	2435382	2435837	.	-	0	ID=cds2299;Name=YP_001533642.1;Parent=gene2340;Note=PFAM: globin KEGG: hne:HNE_1540 protozoan%2Fcyanobacterial globin family protein COG2346: truncated hemoglobins%3B similar to bacterial-like globin;Dbxref=Genbank:YP_001533642.1,GeneID:5713959;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533642.1;transl_table=11
NC_009952.1	RefSeq	gene	2435930	2436349	.	+	.	ID=gene2341;Name=Dshi_2306;Dbxref=GeneID:5713960;gbkey=Gene;locus_tag=Dshi_2306
NC_009952.1	RefSeq	CDS	2435930	2436349	.	+	0	ID=cds2300;Name=YP_001533643.1;Parent=gene2341;Note=Swiss-Prot: P0AF63-HTH-type transcriptional repressor nsrR TIGR00738: rrf2 family protein %28putative transcriptional regulator%29 PS51197: Rrf2-type HTH domain profile%3B BadM%2FRrf2 family;Dbxref=Genbank:YP_001533643.1,GeneID:5713960;gbkey=CDS;product=putative transcriptional regulator;protein_id=YP_001533643.1;transl_table=11
NC_009952.1	RefSeq	gene	2436374	2436607	.	+	.	ID=gene2342;Name=Dshi_2307;Dbxref=GeneID:5713961;gbkey=Gene;locus_tag=Dshi_2307
NC_009952.1	RefSeq	CDS	2436374	2436607	.	+	0	ID=cds2301;Name=YP_001533644.1;Parent=gene2342;Dbxref=Genbank:YP_001533644.1,GeneID:5713961;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533644.1;transl_table=11
NC_009952.1	RefSeq	gene	2436607	2436873	.	+	.	ID=gene2343;Name=Dshi_2308;Dbxref=GeneID:5713962;gbkey=Gene;locus_tag=Dshi_2308
NC_009952.1	RefSeq	CDS	2436607	2436873	.	+	0	ID=cds2302;Name=YP_001533645.1;Parent=gene2343;Dbxref=Genbank:YP_001533645.1,GeneID:5713962;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533645.1;transl_table=11
NC_009952.1	RefSeq	gene	2437551	2438477	.	+	.	ID=gene2344;Name=Dshi_2309;Dbxref=GeneID:5713963;gbkey=Gene;locus_tag=Dshi_2309
NC_009952.1	RefSeq	CDS	2437551	2438477	.	+	0	ID=cds2303;Name=YP_001533646.1;Parent=gene2344;Note=Swiss-Prot: P39138-Arginase TIGRFAM: arginase PFAM: Arginase%2Fagmatinase%2Fformiminoglutamase COG0010: Arginase%2Fagmatinase%2Fformimionoglutamate hydrolase%2C arginase family KEGG: rde:RD1_1416 arginase;Dbxref=Genbank:YP_001533646.1,GeneID:5713963;gbkey=CDS;product=arginase;protein_id=YP_001533646.1;transl_table=11
NC_009952.1	RefSeq	gene	2438486	2439559	.	+	.	ID=gene2345;Name=Dshi_2310;Dbxref=GeneID:5713964;gbkey=Gene;locus_tag=Dshi_2310
NC_009952.1	RefSeq	CDS	2438486	2439559	.	+	0	ID=cds2304;Name=YP_001533647.1;Parent=gene2345;Note=catalyzes the formation of L-proline from L-ornithine;Dbxref=Genbank:YP_001533647.1,GeneID:5713964;gbkey=CDS;product=ornithine cyclodeaminase;protein_id=YP_001533647.1;transl_table=11
NC_009952.1	RefSeq	gene	2439747	2443412	.	+	.	ID=gene2346;Name=putA;Dbxref=GeneID:5713965;gbkey=Gene;gene=putA;locus_tag=Dshi_2311
NC_009952.1	RefSeq	CDS	2439747	2443412	.	+	0	ID=cds2305;Name=YP_001533648.1;Parent=gene2346;Note=proline utilization protein A%3B multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate%3B in Escherichia coli this protein self regulates transcription via a DNA-binding domain at the N-terminus but the protein from Pseudomonas does not have this domain;Dbxref=Genbank:YP_001533648.1,GeneID:5713965;gbkey=CDS;gene=putA;product=bifunctional proline dehydrogenase%2Fpyrroline-5-carboxylate dehydrogenase;protein_id=YP_001533648.1;transl_table=11
NC_009952.1	RefSeq	gene	2443877	2444392	.	+	.	ID=gene2347;Name=Dshi_2312;Dbxref=GeneID:5713966;gbkey=Gene;locus_tag=Dshi_2312
NC_009952.1	RefSeq	CDS	2443877	2444392	.	+	0	ID=cds2306;Name=YP_001533649.1;Parent=gene2347;Dbxref=Genbank:YP_001533649.1,GeneID:5713966;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533649.1;transl_table=11
NC_009952.1	RefSeq	gene	2444564	2444653	.	-	.	ID=gene2348;Name=Dshi_6042;Dbxref=GeneID:5713967;gbkey=Gene;locus_tag=Dshi_6042
NC_009952.1	RefSeq	tRNA	2444564	2444653	.	-	.	ID=rna41;Parent=gene2348;Dbxref=GeneID:5713967;codons=5;gbkey=tRNA;product=tRNA-Ser
NC_009952.1	RefSeq	exon	2444564	2444653	.	-	.	ID=id45;Parent=rna41;Dbxref=GeneID:5713967;codons=5;gbkey=tRNA;product=tRNA-Ser
NC_009952.1	RefSeq	gene	2444714	2445433	.	-	.	ID=gene2349;Name=Dshi_2313;Dbxref=GeneID:5713968;gbkey=Gene;locus_tag=Dshi_2313
NC_009952.1	RefSeq	CDS	2444714	2445433	.	-	0	ID=cds2307;Name=YP_001533650.1;Parent=gene2349;Note=PROSITE: PS50860-Aminoacyl-transfer RNA synthetases class-II profiles PFAM: Threonyl%2Falanyl tRNA synthetase SAD KEGG: rsh:Rsph17029_0823 threonyl%2Falanyl tRNA synthetase%2C SAD;Dbxref=Genbank:YP_001533650.1,GeneID:5713968;gbkey=CDS;product=aminoacyl-tRNA synthetase;protein_id=YP_001533650.1;transl_table=11
NC_009952.1	RefSeq	gene	2445430	2446467	.	-	.	ID=gene2350;Name=Dshi_2314;Dbxref=GeneID:5713969;gbkey=Gene;locus_tag=Dshi_2314
NC_009952.1	RefSeq	CDS	2445430	2446467	.	-	0	ID=cds2308;Name=YP_001533651.1;Parent=gene2350;Note=Swiss-Prot: P0ABK5-Cysteine synthase A PFAM: Pyridoxal-5-phosphate-dependent protein beta subunit COG0031: Cysteine synthase IMG Term;Dbxref=Genbank:YP_001533651.1,GeneID:5713969;gbkey=CDS;product=putative cysteine synthase A;protein_id=YP_001533651.1;transl_table=11
NC_009952.1	RefSeq	gene	2446520	2447656	.	-	.	ID=gene2351;Name=Dshi_2315;Dbxref=GeneID:5713970;gbkey=Gene;locus_tag=Dshi_2315
NC_009952.1	RefSeq	CDS	2446520	2447656	.	-	0	ID=cds2309;Name=YP_001533652.1;Parent=gene2351;Note=PFAM: NUDIX hydrolase%3B AIG2 family protein KEGG: jan:Jann_1992 nucleoside diphosphate pyrophosphatase;Dbxref=Genbank:YP_001533652.1,GeneID:5713970;gbkey=CDS;product=NUDIX hydrolase;protein_id=YP_001533652.1;transl_table=11
NC_009952.1	RefSeq	gene	2447670	2448110	.	-	.	ID=gene2352;Name=Dshi_2316;Dbxref=GeneID:5713971;gbkey=Gene;locus_tag=Dshi_2316
NC_009952.1	RefSeq	CDS	2447670	2448110	.	-	0	ID=cds2310;Name=YP_001533653.1;Parent=gene2352;Dbxref=Genbank:YP_001533653.1,GeneID:5713971;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533653.1;transl_table=11
NC_009952.1	RefSeq	gene	2448130	2449374	.	-	.	ID=gene2353;Name=cfa;Dbxref=GeneID:5713972;gbkey=Gene;gene=cfa;locus_tag=Dshi_2317
NC_009952.1	RefSeq	CDS	2448130	2449374	.	-	0	ID=cds2311;Name=YP_001533654.1;Parent=gene2353;Note=Swiss-Prot: P0A9H7-Cyclopropane-fatty-acyl-phospholipid synthase PFAM: Cyclopropane-fatty-acyl-phospholipid synthase%3B Methyltransferase type 11%3B Methyltransferase type 12;Dbxref=Genbank:YP_001533654.1,GeneID:5713972;gbkey=CDS;gene=cfa;product=cyclopropane-fatty-acyl-phospholipid synthase;protein_id=YP_001533654.1;transl_table=11
NC_009952.1	RefSeq	gene	2449473	2450903	.	-	.	ID=gene2354;Name=phrB;Dbxref=GeneID:5713973;gbkey=Gene;gene=phrB;locus_tag=Dshi_2318
NC_009952.1	RefSeq	CDS	2449473	2450903	.	-	0	ID=cds2312;Name=YP_001533655.1;Parent=gene2354;Note=Swiss-Prot: P00914-deoxyribodipyrimidine photo-lyase phrB PFAM: DNA photolyase FAD-binding%3B DNA photolyase domain protein;Dbxref=Genbank:YP_001533655.1,GeneID:5713973;gbkey=CDS;gene=phrB;product=deoxyribodipyrimidine photo-lyase;protein_id=YP_001533655.1;transl_table=11
NC_009952.1	RefSeq	gene	2451184	2452170	.	-	.	ID=gene2355;Name=Dshi_2319;Dbxref=GeneID:5713974;gbkey=Gene;locus_tag=Dshi_2319
NC_009952.1	RefSeq	CDS	2451184	2452170	.	-	0	ID=cds2313;Name=YP_001533656.1;Parent=gene2355;Note=Swiss-Prot: P26646-Protein yhdH TIGRFAM: Quinone oxidoreductase putative YhdH%2FYhfP PFAM: Alcohol dehydrogenase zinc-binding domain protein%3B Alcohol dehydrogenase GroES domain protein%3B YhdH;Dbxref=Genbank:YP_001533656.1,GeneID:5713974;gbkey=CDS;product=putative quinone oxidoreductase;protein_id=YP_001533656.1;transl_table=11
NC_009952.1	RefSeq	gene	2452182	2453288	.	-	.	ID=gene2356;Name=dmdA;Dbxref=GeneID:5713975;gbkey=Gene;gene=dmdA;locus_tag=Dshi_2320
NC_009952.1	RefSeq	CDS	2452182	2453288	.	-	0	ID=cds2314;Name=YP_001533657.1;Parent=gene2356;Note=DmdA%3B DMSP demethylase%3B in Silicibacter knockout of this gene results in an inability to convert DMSP to methanethiol which is restored with a cloned copy of the gene;Dbxref=Genbank:YP_001533657.1,GeneID:5713975;gbkey=CDS;gene=dmdA;product=putative dimethyl sulfoniopropionate demethylase;protein_id=YP_001533657.1;transl_table=11
NC_009952.1	RefSeq	gene	2453285	2453764	.	-	.	ID=gene2357;Name=dmdA;Dbxref=GeneID:5713976;gbkey=Gene;gene=dmdA;locus_tag=Dshi_2321
NC_009952.1	RefSeq	CDS	2453285	2453764	.	-	0	ID=cds2315;Name=YP_001533658.1;Parent=gene2357;Note=Swiss-Prot: Q02886-Protein dinB PFAM: DinB family protein KEGG: acr:Acry_1562 DinB family protein COG2318: Uncharacterized protein conserved in bacteria%3B associated with DNA damage-inducible %28din%29 genes;Dbxref=Genbank:YP_001533658.1,GeneID:5713976;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533658.1;transl_table=11
NC_009952.1	RefSeq	gene	2453788	2454489	.	-	.	ID=gene2358;Name=Dshi_2322;Dbxref=GeneID:5713977;gbkey=Gene;locus_tag=Dshi_2322
NC_009952.1	RefSeq	CDS	2453788	2454489	.	-	0	ID=cds2316;Name=YP_001533659.1;Parent=gene2358;Note=PFAM: protein of unknown function DUF1326 KEGG: rde:RD1_2286 hypothetical protein;Dbxref=Genbank:YP_001533659.1,GeneID:5713977;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533659.1;transl_table=11
NC_009952.1	RefSeq	gene	2454501	2455259	.	-	.	ID=gene2359;Name=Dshi_2323;Dbxref=GeneID:5713978;gbkey=Gene;locus_tag=Dshi_2323
NC_009952.1	RefSeq	CDS	2454501	2455259	.	-	0	ID=cds2317;Name=YP_001533660.1;Parent=gene2359;Dbxref=Genbank:YP_001533660.1,GeneID:5713978;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533660.1;transl_table=11
NC_009952.1	RefSeq	gene	2455350	2456078	.	+	.	ID=gene2360;Name=Dshi_2324;Dbxref=GeneID:5713979;gbkey=Gene;locus_tag=Dshi_2324
NC_009952.1	RefSeq	CDS	2455350	2456078	.	+	0	ID=cds2318;Name=YP_001533661.1;Parent=gene2360;Note=PFAM: regulatory protein GntR HTH%3B GntR domain protein KEGG: rde:RD1_2283 transcriptional regulator%2C GntR family%2C putative%3B GntR HTH;Dbxref=Genbank:YP_001533661.1,GeneID:5713979;gbkey=CDS;product=regulatory protein;protein_id=YP_001533661.1;transl_table=11
NC_009952.1	RefSeq	gene	2456174	2457220	.	+	.	ID=gene2361;Name=Dshi_2325;Dbxref=GeneID:5713980;gbkey=Gene;locus_tag=Dshi_2325
NC_009952.1	RefSeq	CDS	2456174	2457220	.	+	0	ID=cds2319;Name=YP_001533662.1;Parent=gene2361;Note=Swiss-Prot: P31133-Putrescine-binding periplasmic protein %5BPrecursor%5D SSF53850: Periplasmic binding protein-like II superfamily;Dbxref=Genbank:YP_001533662.1,GeneID:5713980;gbkey=CDS;product=putative periplasmic-binding protein;protein_id=YP_001533662.1;transl_table=11
NC_009952.1	RefSeq	gene	2457262	2457699	.	+	.	ID=gene2362;Name=Dshi_2326;Dbxref=GeneID:5713981;gbkey=Gene;locus_tag=Dshi_2326
NC_009952.1	RefSeq	CDS	2457262	2457699	.	+	0	ID=cds2320;Name=YP_001533663.1;Parent=gene2362;Dbxref=Genbank:YP_001533663.1,GeneID:5713981;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533663.1;transl_table=11
NC_009952.1	RefSeq	gene	2458342	2459106	.	+	.	ID=gene2363;Name=Dshi_2327;Dbxref=GeneID:5713982;gbkey=Gene;locus_tag=Dshi_2327
NC_009952.1	RefSeq	CDS	2458342	2459106	.	+	0	ID=cds2321;Name=YP_001533664.1;Parent=gene2363;Dbxref=Genbank:YP_001533664.1,GeneID:5713982;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533664.1;transl_table=11
NC_009952.1	RefSeq	gene	2459215	2459814	.	+	.	ID=gene2364;Name=Dshi_2328;Dbxref=GeneID:5713983;gbkey=Gene;locus_tag=Dshi_2328
NC_009952.1	RefSeq	CDS	2459215	2459814	.	+	0	ID=cds2322;Name=YP_001533665.1;Parent=gene2364;Note=SSF88874: Receptor-binding domain of short tail fibre protein gp12 superfamily PFAM: Tail Collar domain protein;Dbxref=Genbank:YP_001533665.1,GeneID:5713983;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533665.1;transl_table=11
NC_009952.1	RefSeq	gene	2459914	2460507	.	+	.	ID=gene2365;Name=Dshi_2329;Dbxref=GeneID:5713984;gbkey=Gene;locus_tag=Dshi_2329
NC_009952.1	RefSeq	CDS	2459914	2460507	.	+	0	ID=cds2323;Name=YP_001533666.1;Parent=gene2365;Note=PFAM: Tail Collar domain protein;Dbxref=Genbank:YP_001533666.1,GeneID:5713984;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533666.1;transl_table=11
NC_009952.1	RefSeq	gene	2460588	2461223	.	+	.	ID=gene2366;Name=Dshi_2330;Dbxref=GeneID:5713985;gbkey=Gene;locus_tag=Dshi_2330
NC_009952.1	RefSeq	CDS	2460588	2461223	.	+	0	ID=cds2324;Name=YP_001533667.1;Parent=gene2366;Note=PFAM: protein of unknown function DUF1194 KEGG: rsq:Rsph17025_0723 protein of unknown function DUF1194;Dbxref=Genbank:YP_001533667.1,GeneID:5713985;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533667.1;transl_table=11
NC_009952.1	RefSeq	gene	2461236	2461580	.	+	.	ID=gene2367;Name=Dshi_2331;Dbxref=GeneID:5713986;gbkey=Gene;locus_tag=Dshi_2331
NC_009952.1	RefSeq	CDS	2461236	2461580	.	+	0	ID=cds2325;Name=YP_001533668.1;Parent=gene2367;Note=PFAM: Antibiotic biosynthesis monooxygenase COG2329: Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides KEGG: reu:Reut_B5114 antibiotic biosynthesis monooxygenase%3B similar to antibiotic biosynthesis monooxygenase;Dbxref=Genbank:YP_001533668.1,GeneID:5713986;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533668.1;transl_table=11
NC_009952.1	RefSeq	gene	2461615	2462868	.	+	.	ID=gene2368;Name=Dshi_2332;Dbxref=GeneID:5713987;gbkey=Gene;locus_tag=Dshi_2332
NC_009952.1	RefSeq	CDS	2461615	2462868	.	+	0	ID=cds2326;Name=YP_001533669.1;Parent=gene2368;Note=Swiss-Prot: Q55027-Probable chromate transport protein TIGRFAM: chromate transporter%2C chromate ion transporter %28CHR%29 family PFAM: Chromate transporter KEGG: jan:Jann_1226 chromate transporter;Dbxref=Genbank:YP_001533669.1,GeneID:5713987;gbkey=CDS;product=putative chromate transport protein;protein_id=YP_001533669.1;transl_table=11
NC_009952.1	RefSeq	gene	2462966	2463493	.	+	.	ID=gene2369;Name=Dshi_2333;Dbxref=GeneID:5713988;gbkey=Gene;locus_tag=Dshi_2333
NC_009952.1	RefSeq	CDS	2462966	2463493	.	+	0	ID=cds2327;Name=YP_001533670.1;Parent=gene2369;Note=COG3814: Uncharacterized protein conserved in bacteria PFAM: protein of unknown function DUF1321 KEGG: sit:TM1040_1450 protein of unknown function DUF1321;Dbxref=Genbank:YP_001533670.1,GeneID:5713988;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533670.1;transl_table=11
NC_009952.1	RefSeq	gene	2463610	2465007	.	+	.	ID=gene2370;Name=fumC;Dbxref=GeneID:5713989;gbkey=Gene;gene=fumC;locus_tag=Dshi_2334
NC_009952.1	RefSeq	CDS	2463610	2465007	.	+	0	ID=cds2328;Name=YP_001533671.1;Parent=gene2370;Note=class II family %28does not require metal%29%3B tetrameric enzyme%3B fumarase C%3B reversibly converts %28S%29-malate to fumarate and water%3B functions in the TCA cycle;Dbxref=Genbank:YP_001533671.1,GeneID:5713989;gbkey=CDS;gene=fumC;product=fumarate hydratase;protein_id=YP_001533671.1;transl_table=11
NC_009952.1	RefSeq	gene	2465235	2465534	.	+	.	ID=gene2371;Name=Dshi_2335;Dbxref=GeneID:5713990;gbkey=Gene;locus_tag=Dshi_2335
NC_009952.1	RefSeq	CDS	2465235	2465534	.	+	0	ID=cds2329;Name=YP_001533672.1;Parent=gene2371;Note=PFAM: Ribbon-helix-helix protein%2C copG family COG4321:Uncharacterized protein related to arylsulfate sulfotransferase involved in siderophore biosynthesis;Dbxref=Genbank:YP_001533672.1,GeneID:5713990;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533672.1;transl_table=11
NC_009952.1	RefSeq	gene	2465612	2465803	.	+	.	ID=gene2372;Name=Dshi_2336;Dbxref=GeneID:5713991;gbkey=Gene;locus_tag=Dshi_2336
NC_009952.1	RefSeq	CDS	2465612	2465803	.	+	0	ID=cds2330;Name=YP_001533673.1;Parent=gene2372;Note=KEGG: jan:Jann_3588 hypothetical protein;Dbxref=Genbank:YP_001533673.1,GeneID:5713991;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533673.1;transl_table=11
NC_009952.1	RefSeq	gene	2465843	2467219	.	-	.	ID=gene2373;Name=Dshi_2337;Dbxref=GeneID:5713992;gbkey=Gene;locus_tag=Dshi_2337
NC_009952.1	RefSeq	CDS	2465843	2467219	.	-	0	ID=cds2331;Name=YP_001533674.1;Parent=gene2373;Note=PFAM: cytochrome P450 KEGG: jan:Jann_2396 cytochrome P450;Dbxref=Genbank:YP_001533674.1,GeneID:5713992;gbkey=CDS;product=cytochrome P450;protein_id=YP_001533674.1;transl_table=11
NC_009952.1	RefSeq	gene	2467216	2468406	.	-	.	ID=gene2374;Name=Dshi_2338;Dbxref=GeneID:5713993;gbkey=Gene;locus_tag=Dshi_2338
NC_009952.1	RefSeq	CDS	2467216	2468406	.	-	0	ID=cds2332;Name=YP_001533675.1;Parent=gene2374;Note=KEGG: sil:SPO1897 hypothetical protein;Dbxref=Genbank:YP_001533675.1,GeneID:5713993;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533675.1;transl_table=11
NC_009952.1	RefSeq	gene	2468530	2468757	.	+	.	ID=gene2375;Name=Dshi_2339;Dbxref=GeneID:5713994;gbkey=Gene;locus_tag=Dshi_2339
NC_009952.1	RefSeq	CDS	2468530	2468757	.	+	0	ID=cds2333;Name=YP_001533676.1;Parent=gene2375;Note=PFAM: SirA family protein KEGG: sil:SPO1895 SirA family protein Swiss-Prot: Q2NWX1-Sulfurtransferase tusA;Dbxref=Genbank:YP_001533676.1,GeneID:5713994;gbkey=CDS;product=SirA family protein;protein_id=YP_001533676.1;transl_table=11
NC_009952.1	RefSeq	gene	2468813	2471893	.	-	.	ID=gene2376;Name=Dshi_2340;Dbxref=GeneID:5713995;gbkey=Gene;locus_tag=Dshi_2340
NC_009952.1	RefSeq	CDS	2468813	2471893	.	-	0	ID=cds2334;Name=YP_001533677.1;Parent=gene2376;Note=Swiss-Prot: P21513-Ribonuclease E TIGRFAM: ribonuclease%2C Rne%2FRng family KEGG: sit:TM1040_1459 ribonuclease%2C Rne%2FRng family%3B Rne%2FRng family;Dbxref=Genbank:YP_001533677.1,GeneID:5713995;gbkey=CDS;product=ribonuclease;protein_id=YP_001533677.1;transl_table=11
NC_009952.1	RefSeq	gene	2472393	2474747	.	-	.	ID=gene2377;Name=Dshi_2341;Dbxref=GeneID:5713996;gbkey=Gene;locus_tag=Dshi_2341
NC_009952.1	RefSeq	CDS	2472393	2474747	.	-	0	ID=cds2335;Name=YP_001533678.1;Parent=gene2377;Note=PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit Swiss-Prot: P44483-Putative TRAP transporter large permease protein HI0050 TIGR00786: TRAP transporter%2C DctM subunit KEGG: sil:SPO2571 TRAP transporter%2C DctM subunit%2C putative%3B DctM subunit;Dbxref=Genbank:YP_001533678.1,GeneID:5713996;gbkey=CDS;product=putative TRAP C4-dicarboxylate transport system permease;protein_id=YP_001533678.1;transl_table=11
NC_009952.1	RefSeq	gene	2474765	2475718	.	-	.	ID=gene2378;Name=Dshi_2342;Dbxref=GeneID:5713997;gbkey=Gene;locus_tag=Dshi_2342
NC_009952.1	RefSeq	CDS	2474765	2475718	.	-	0	ID=cds2336;Name=YP_001533679.1;Parent=gene2378;Note=PFAM: Tripartite ATP-independent periplasmic transporters%2C DctQ component COG4665: TRAP-type mannitol%2Fchloroaromatic compound transport system%2C small permease component%3B associated with TRAP transporters%2C DctQ component;Dbxref=Genbank:YP_001533679.1,GeneID:5713997;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533679.1;transl_table=11
NC_009952.1	RefSeq	gene	2475833	2476918	.	-	.	ID=gene2379;Name=Dshi_2343;Dbxref=GeneID:5713998;gbkey=Gene;locus_tag=Dshi_2343
NC_009952.1	RefSeq	CDS	2475833	2476918	.	-	0	ID=cds2337;Name=YP_001533680.1;Parent=gene2379;Note=PFAM: TRAP dicarboxylate transporter- DctP subunit COG4663: TRAP-type mannitol%2Fchloroaromatic compound transport system%2C periplasmic component%3B associated with TRAP dicarboxylate transporter%2C DctP subunit;Dbxref=Genbank:YP_001533680.1,GeneID:5713998;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533680.1;transl_table=11
NC_009952.1	RefSeq	gene	2477127	2478569	.	+	.	ID=gene2380;Name=Dshi_2344;Dbxref=GeneID:5713999;gbkey=Gene;locus_tag=Dshi_2344
NC_009952.1	RefSeq	CDS	2477127	2478569	.	+	0	ID=cds2338;Name=YP_001533681.1;Parent=gene2380;Note=PFAM: ATP-binding region ATPase domain protein%3B histidine kinase dimerisation and phosphoacceptor region%3B Cache type 2 domain protein Swiss-Prot: P09835-Sensor protein uhpB%3B colocated with two component transcriptional regulator;Dbxref=Genbank:YP_001533681.1,GeneID:5713999;gbkey=CDS;product=integral membrane sensor signal transduction histidine kinase;protein_id=YP_001533681.1;transl_table=11
NC_009952.1	RefSeq	gene	2478566	2479228	.	+	.	ID=gene2381;Name=Dshi_2345;Dbxref=GeneID:5714000;gbkey=Gene;locus_tag=Dshi_2345
NC_009952.1	RefSeq	CDS	2478566	2479228	.	+	0	ID=cds2339;Name=YP_001533682.1;Parent=gene2381;Note=PFAM: regulatory protein LuxR%3B response regulator receiver COG2197: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Swiss-Prot: P0AF28-Nitrate%2Fnitrite response regulator protein narL%3B colocated with histidine kinase%3B LuxR family;Dbxref=Genbank:YP_001533682.1,GeneID:5714000;gbkey=CDS;product=two component transcriptional regulator;protein_id=YP_001533682.1;transl_table=11
NC_009952.1	RefSeq	gene	2479455	2480585	.	-	.	ID=gene2382;Name=tgt;Dbxref=GeneID:5714001;gbkey=Gene;gene=tgt;locus_tag=Dshi_2346
NC_009952.1	RefSeq	CDS	2479455	2480585	.	-	0	ID=cds2340;Name=YP_001533683.1;Parent=gene2382;Note=Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU%28N%29 anticodons %28tRNA-Asp%2C -Asn%2C -His and -Tyr%29;Dbxref=Genbank:YP_001533683.1,GeneID:5714001;gbkey=CDS;gene=tgt;product=queuine tRNA-ribosyltransferase;protein_id=YP_001533683.1;transl_table=11
NC_009952.1	RefSeq	gene	2481051	2482004	.	+	.	ID=gene2383;Name=Dshi_2347;Dbxref=GeneID:5714002;gbkey=Gene;locus_tag=Dshi_2347
NC_009952.1	RefSeq	CDS	2481051	2482004	.	+	0	ID=cds2341;Name=YP_001533684.1;Parent=gene2383;Note=PFAM: regulatory protein LysR%3B LysR substrate-binding COG0583: transcriptional regulator Swiss-Prot: P55700-nodulation protein D 2 %28Represses the expression of the nodABCIJ-nolO-noeI operon%29;Dbxref=Genbank:YP_001533684.1,GeneID:5714002;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=YP_001533684.1;transl_table=11
NC_009952.1	RefSeq	gene	2482067	2482429	.	+	.	ID=gene2384;Name=Dshi_2348;Dbxref=GeneID:5714003;gbkey=Gene;locus_tag=Dshi_2348
NC_009952.1	RefSeq	CDS	2482067	2482429	.	+	0	ID=cds2342;Name=YP_001533685.1;Parent=gene2384;Note=PFAM: protein of unknown function DUF59;Dbxref=Genbank:YP_001533685.1,GeneID:5714003;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533685.1;transl_table=11
NC_009952.1	RefSeq	gene	2482501	2482866	.	+	.	ID=gene2385;Name=Dshi_2349;Dbxref=GeneID:5714004;gbkey=Gene;locus_tag=Dshi_2349
NC_009952.1	RefSeq	CDS	2482501	2482866	.	+	0	ID=cds2343;Name=YP_001533686.1;Parent=gene2385;Note=Swiss-Prot: P0AAC8-Iron-binding protein iscA TIGRFAM: iron-sulfur cluster assembly accessory protein PFAM: HesB%2FYadR%2FYfhF-family protein;Dbxref=Genbank:YP_001533686.1,GeneID:5714004;gbkey=CDS;product=putative iron-binding protein iscA;protein_id=YP_001533686.1;transl_table=11
NC_009952.1	RefSeq	gene	2482885	2483898	.	-	.	ID=gene2386;Name=Dshi_2350;Dbxref=GeneID:5714005;gbkey=Gene;locus_tag=Dshi_2350
NC_009952.1	RefSeq	CDS	2482885	2483898	.	-	0	ID=cds2344;Name=YP_001533687.1;Parent=gene2386;Note=Swiss-Prot: Q58296-Putative molybdopterin biosynthesis protein MJ0886 PFAM: molybdopterin binding domain COG0303: Molybdopterin biosynthesis enzyme;Dbxref=Genbank:YP_001533687.1,GeneID:5714005;gbkey=CDS;product=putative molybdopterin biosynthesis protein;protein_id=YP_001533687.1;transl_table=11
NC_009952.1	RefSeq	gene	2483895	2484884	.	-	.	ID=gene2387;Name=Dshi_2351;Dbxref=GeneID:5714006;gbkey=Gene;locus_tag=Dshi_2351
NC_009952.1	RefSeq	CDS	2483895	2484884	.	-	0	ID=cds2345;Name=YP_001533688.1;Parent=gene2387;Note=IPR003777 %2F pfam02625 XdhC and CoxI family protein COG1975: Xanthine and CO dehydrogenases maturation factor%2C XdhC%2FCoxF family%3B related to  XdhC and CoxI family;Dbxref=Genbank:YP_001533688.1,GeneID:5714006;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533688.1;transl_table=11
NC_009952.1	RefSeq	gene	2485055	2486401	.	+	.	ID=gene2388;Name=Dshi_2352;Dbxref=GeneID:5714007;gbkey=Gene;locus_tag=Dshi_2352
NC_009952.1	RefSeq	CDS	2485055	2486401	.	+	0	ID=cds2346;Name=YP_001533689.1;Parent=gene2388;Note=PFAM: Protein of unknown function DUF1800 COG5267: Uncharacterized protein conserved in bacteria;Dbxref=Genbank:YP_001533689.1,GeneID:5714007;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533689.1;transl_table=11
NC_009952.1	RefSeq	gene	2486413	2487582	.	+	.	ID=gene2389;Name=Dshi_2353;Dbxref=GeneID:5714008;gbkey=Gene;locus_tag=Dshi_2353
NC_009952.1	RefSeq	CDS	2486413	2487582	.	+	0	ID=cds2347;Name=YP_001533690.1;Parent=gene2389;Note=PFAM: protein of unknown function DUF1501 COG4102: Uncharacterized protein conserved in bacteria;Dbxref=Genbank:YP_001533690.1,GeneID:5714008;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533690.1;transl_table=11
NC_009952.1	RefSeq	gene	2487671	2488822	.	+	.	ID=gene2390;Name=Dshi_2354;Dbxref=GeneID:5714009;gbkey=Gene;locus_tag=Dshi_2354
NC_009952.1	RefSeq	CDS	2487671	2488822	.	+	0	ID=cds2348;Name=YP_001533691.1;Parent=gene2390;Note=PFAM: major facilitator superfamily MFS_1 KEGG: reu:Reut_A3422 major facilitator superfamily MFS_1 Swiss-Prot: P77389-Inner membrane transport protein;Dbxref=Genbank:YP_001533691.1,GeneID:5714009;gbkey=CDS;product=MFS transporter;protein_id=YP_001533691.1;transl_table=11
NC_009952.1	RefSeq	gene	2488833	2490095	.	-	.	ID=gene2391;Name=Dshi_2355;Dbxref=GeneID:5714010;gbkey=Gene;locus_tag=Dshi_2355
NC_009952.1	RefSeq	CDS	2488833	2490095	.	-	0	ID=cds2349;Name=YP_001533692.1;Parent=gene2391;Note=PFAM: VWA containing CoxE family protein KEGG: jan:Jann_1760 VWA containing CoxE-like;Dbxref=Genbank:YP_001533692.1,GeneID:5714010;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533692.1;transl_table=11
NC_009952.1	RefSeq	gene	2490196	2491107	.	-	.	ID=gene2392;Name=Dshi_2356;Dbxref=GeneID:5714011;gbkey=Gene;locus_tag=Dshi_2356
NC_009952.1	RefSeq	CDS	2490196	2491107	.	-	0	ID=cds2350;Name=YP_001533693.1;Parent=gene2392;Note=PFAM: ATPase associated with various cellular activities AAA_5 KEGG: sil:SPO2646 hypothetical protein Swiss-Prot: Q4L6B6-Uncharacterized protein SH1500;Dbxref=Genbank:YP_001533693.1,GeneID:5714011;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533693.1;transl_table=11
NC_009952.1	RefSeq	gene	2491250	2492470	.	+	.	ID=gene2393;Name=Dshi_2357;Dbxref=GeneID:5714012;gbkey=Gene;locus_tag=Dshi_2357
NC_009952.1	RefSeq	CDS	2491250	2492470	.	+	0	ID=cds2351;Name=YP_001533694.1;Parent=gene2393;Note=COG1960: Acyl-CoA dehydrogenases PFAM: Acyl-CoA dehydrogenase;Dbxref=Genbank:YP_001533694.1,GeneID:5714012;gbkey=CDS;product=acyl-CoA dehydrogenase;protein_id=YP_001533694.1;transl_table=11
NC_009952.1	RefSeq	gene	2492678	2493325	.	+	.	ID=gene2394;Name=Dshi_2358;Dbxref=GeneID:5714013;gbkey=Gene;locus_tag=Dshi_2358
NC_009952.1	RefSeq	CDS	2492678	2493325	.	+	0	ID=cds2352;Name=YP_001533695.1;Parent=gene2394;Note=PFAM: Lysine exporter protein %28LYSE%2FYGGA%29 KEGG: jan:Jann_3206 lysine exporter protein %28LysE%2FYggA%29;Dbxref=Genbank:YP_001533695.1,GeneID:5714013;gbkey=CDS;product=putative lysine exporter protein;protein_id=YP_001533695.1;transl_table=11
NC_009952.1	RefSeq	gene	2493841	2495091	.	+	.	ID=gene2395;Name=Dshi_2359;Dbxref=GeneID:5714014;gbkey=Gene;locus_tag=Dshi_2359
NC_009952.1	RefSeq	CDS	2493841	2495091	.	+	0	ID=cds2353;Name=YP_001533696.1;Parent=gene2395;Dbxref=Genbank:YP_001533696.1,GeneID:5714014;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533696.1;transl_table=11
NC_009952.1	RefSeq	gene	2495217	2495825	.	-	.	ID=gene2396;Name=ureG;Dbxref=GeneID:5714015;gbkey=Gene;gene=ureG;locus_tag=Dshi_2360
NC_009952.1	RefSeq	CDS	2495217	2495825	.	-	0	ID=cds2354;Name=YP_001533697.1;Parent=gene2396;Note=Swiss-Prot: Q03287-Urease accessory protein ureG TIGRFAM: urease accessory protein UreG PFAM: cobalamin synthesis protein P47K KEGG: rsq:Rsph17025_0992 urease accessory protein UreG;Dbxref=Genbank:YP_001533697.1,GeneID:5714015;gbkey=CDS;gene=ureG;product=urease accessory protein;protein_id=YP_001533697.1;transl_table=11
NC_009952.1	RefSeq	gene	2495818	2496201	.	-	.	ID=gene2397;Name=ureG;Dbxref=GeneID:5714016;gbkey=Gene;gene=ureG;locus_tag=Dshi_2361
NC_009952.1	RefSeq	CDS	2495818	2496201	.	-	0	ID=cds2355;Name=YP_001533698.1;Parent=gene2397;Note=COG0599: Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit Swiss-Prot: P29911-Uncharacterized 13.8 kDa protein in nqo9-nqo10 intergenic region PFAM: Carboxymuconolactone decarboxylase%3B related to carboxymuconolactone decarboxylase;Dbxref=Genbank:YP_001533698.1,GeneID:5714016;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533698.1;transl_table=11
NC_009952.1	RefSeq	gene	2496198	2496830	.	-	.	ID=gene2398;Name=ureF;Dbxref=GeneID:5714017;gbkey=Gene;gene=ureF;locus_tag=Dshi_2362
NC_009952.1	RefSeq	CDS	2496198	2496830	.	-	0	ID=cds2356;Name=YP_001533699.1;Parent=gene2398;Note=Swiss-Prot: Q9HUS1-Urease accessory protein ureF PFAM: Urease accessory protein UreF COG0830: Urease accessory protein UreF;Dbxref=Genbank:YP_001533699.1,GeneID:5714017;gbkey=CDS;gene=ureF;product=putative urease accessory protein;protein_id=YP_001533699.1;transl_table=11
NC_009952.1	RefSeq	gene	2496832	2497314	.	-	.	ID=gene2399;Name=ureE;Dbxref=GeneID:5714018;gbkey=Gene;gene=ureE;locus_tag=Dshi_2363
NC_009952.1	RefSeq	CDS	2496832	2497314	.	-	0	ID=cds2357;Name=YP_001533700.1;Parent=gene2399;Note=PFAM: UreE urease accessory domain protein PIRSF036402: urease accessory protein UreE %28nickel metallochaperone%29 Swiss-Prot: Q9AQT2-Urease accessory protein ureE;Dbxref=Genbank:YP_001533700.1,GeneID:5714018;gbkey=CDS;gene=ureE;product=urease accessory domain-containing protein;protein_id=YP_001533700.1;transl_table=11
NC_009952.1	RefSeq	gene	2497676	2497882	.	-	.	ID=gene2400;Name=Dshi_2364;Dbxref=GeneID:5714019;gbkey=Gene;locus_tag=Dshi_2364
NC_009952.1	RefSeq	CDS	2497676	2497882	.	-	0	ID=cds2358;Name=YP_001533701.1;Parent=gene2400;Dbxref=Genbank:YP_001533701.1,GeneID:5714019;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533701.1;transl_table=11
NC_009952.1	RefSeq	gene	2498640	2500349	.	-	.	ID=gene2401;Name=ureC;Dbxref=GeneID:5714020;gbkey=Gene;gene=ureC;locus_tag=Dshi_2365
NC_009952.1	RefSeq	CDS	2498640	2500349	.	-	0	ID=cds2359;Name=YP_001533702.1;Parent=gene2401;Note=ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide%3B in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa%3B the holoenzyme is composed of 3 ureC %28alpha%29 and 3 ureAB %28gamma%2Fbeta%29 subunits;Dbxref=Genbank:YP_001533702.1,GeneID:5714020;gbkey=CDS;gene=ureC;product=urease subunit alpha;protein_id=YP_001533702.1;transl_table=11
NC_009952.1	RefSeq	gene	2500485	2500814	.	-	.	ID=gene2402;Name=Dshi_2366;Dbxref=GeneID:5714021;gbkey=Gene;locus_tag=Dshi_2366
NC_009952.1	RefSeq	CDS	2500485	2500814	.	-	0	ID=cds2360;Name=YP_001533703.1;Parent=gene2402;Dbxref=Genbank:YP_001533703.1,GeneID:5714021;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533703.1;transl_table=11
NC_009952.1	RefSeq	gene	2500927	2501649	.	-	.	ID=gene2403;Name=Dshi_2367;Dbxref=GeneID:5714022;gbkey=Gene;locus_tag=Dshi_2367
NC_009952.1	RefSeq	CDS	2500927	2501649	.	-	0	ID=cds2361;Name=YP_001533704.1;Parent=gene2403;Dbxref=Genbank:YP_001533704.1,GeneID:5714022;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533704.1;transl_table=11
NC_009952.1	RefSeq	gene	2501649	2501954	.	-	.	ID=gene2404;Name=ureB;Dbxref=GeneID:5714023;gbkey=Gene;gene=ureB;locus_tag=Dshi_2368
NC_009952.1	RefSeq	CDS	2501649	2501954	.	-	0	ID=cds2362;Name=YP_001533705.1;Parent=gene2404;Note=Swiss-Prot: Q28RJ8-Urease subunit beta ureB TIGRFAM: urease%2C beta subunit PFAM: Urease beta subunit;Dbxref=Genbank:YP_001533705.1,GeneID:5714023;gbkey=CDS;gene=ureB;product=urease subunit beta;protein_id=YP_001533705.1;transl_table=11
NC_009952.1	RefSeq	gene	2502086	2502388	.	-	.	ID=gene2405;Name=ureA;Dbxref=GeneID:5714024;gbkey=Gene;gene=ureA;locus_tag=Dshi_2369
NC_009952.1	RefSeq	CDS	2502086	2502388	.	-	0	ID=cds2363;Name=YP_001533706.1;Parent=gene2405;Note=UreA%2C with UreB and UreC catalyzes the hydrolysis of urea into ammonia and carbon dioxide%3B nickel metalloenzyme%3B accessory proteins UreD%2C UreE%2C UreF%2C and UreG are necessary for assembly of the metallocenter;Dbxref=Genbank:YP_001533706.1,GeneID:5714024;gbkey=CDS;gene=ureA;product=urease subunit gamma;protein_id=YP_001533706.1;transl_table=11
NC_009952.1	RefSeq	gene	2502483	2503328	.	-	.	ID=gene2406;Name=ureD;Dbxref=GeneID:5714025;gbkey=Gene;gene=ureD;locus_tag=Dshi_2370
NC_009952.1	RefSeq	CDS	2502483	2503328	.	-	0	ID=cds2364;Name=YP_001533707.1;Parent=gene2406;Note=Swiss-Prot: P42888-Urease accessory protein ureD PFAM: Urease accessory protein UreD KEGG: rsh:Rsph17029_1955 urease accessory protein UreD;Dbxref=Genbank:YP_001533707.1,GeneID:5714025;gbkey=CDS;gene=ureD;product=urease accessory protein;protein_id=YP_001533707.1;transl_table=11
NC_009952.1	RefSeq	gene	2503566	2504603	.	+	.	ID=gene2407;Name=pyrC2;Dbxref=GeneID:5714026;gbkey=Gene;gene=pyrC2;locus_tag=Dshi_2371
NC_009952.1	RefSeq	CDS	2503566	2504603	.	+	0	ID=cds2365;Name=YP_001533708.1;Parent=gene2407;Note=catalyzes the formation of N-carbamoyl-L-aspartate from %28S%29-dihydroorotate in pyrimidine biosynthesis;Dbxref=Genbank:YP_001533708.1,GeneID:5714026;gbkey=CDS;gene=pyrC2;product=dihydroorotase;protein_id=YP_001533708.1;transl_table=11
NC_009952.1	RefSeq	gene	2504743	2505423	.	+	.	ID=gene2408;Name=pyrE;Dbxref=GeneID:5714027;gbkey=Gene;gene=pyrE;locus_tag=Dshi_2372
NC_009952.1	RefSeq	CDS	2504743	2505423	.	+	0	ID=cds2366;Name=YP_001533709.1;Parent=gene2408;Note=involved in fifth step of pyrimidine biosynthesis%3B converts orotidine 5%27-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate;Dbxref=Genbank:YP_001533709.1,GeneID:5714027;gbkey=CDS;gene=pyrE;product=orotate phosphoribosyltransferase;protein_id=YP_001533709.1;transl_table=11
NC_009952.1	RefSeq	gene	2505654	2507174	.	+	.	ID=gene2409;Name=dnaB;Dbxref=GeneID:5714028;gbkey=Gene;gene=dnaB;locus_tag=Dshi_2373
NC_009952.1	RefSeq	CDS	2505654	2507174	.	+	0	ID=cds2367;Name=YP_001533710.1;Parent=gene2409;Note=unwinds double stranded DNA;Dbxref=Genbank:YP_001533710.1,GeneID:5714028;gbkey=CDS;gene=dnaB;product=replicative DNA helicase;protein_id=YP_001533710.1;transl_table=11
NC_009952.1	RefSeq	gene	2507462	2508685	.	+	.	ID=gene2410;Name=Dshi_2374;Dbxref=GeneID:5714029;gbkey=Gene;locus_tag=Dshi_2374
NC_009952.1	RefSeq	CDS	2507462	2508685	.	+	0	ID=cds2368;Name=YP_001533711.1;Parent=gene2410;Note=PFAM: histidine kinase HAMP region domain protein KEGG: rde:RD1_0232 HAMP domain protein%2C putative;Dbxref=Genbank:YP_001533711.1,GeneID:5714029;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533711.1;transl_table=11
NC_009952.1	RefSeq	gene	2508782	2509588	.	+	.	ID=gene2411;Name=Dshi_2375;Dbxref=GeneID:5714030;gbkey=Gene;locus_tag=Dshi_2375
NC_009952.1	RefSeq	CDS	2508782	2509588	.	+	0	ID=cds2369;Name=YP_001533712.1;Parent=gene2411;Note=PFAM: protein of unknown function DUF1194 KEGG: mes:Meso_1299 protein of unknown function DUF1194;Dbxref=Genbank:YP_001533712.1,GeneID:5714030;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533712.1;transl_table=11
NC_009952.1	RefSeq	gene	2509613	2510089	.	-	.	ID=gene2412;Name=Dshi_2376;Dbxref=GeneID:5714031;gbkey=Gene;locus_tag=Dshi_2376
NC_009952.1	RefSeq	CDS	2509613	2510089	.	-	0	ID=cds2370;Name=YP_001533713.1;Parent=gene2412;Dbxref=Genbank:YP_001533713.1,GeneID:5714031;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533713.1;transl_table=11
NC_009952.1	RefSeq	gene	2510218	2512242	.	-	.	ID=gene2413;Name=Dshi_2377;Dbxref=GeneID:5714032;gbkey=Gene;locus_tag=Dshi_2377
NC_009952.1	RefSeq	CDS	2510218	2512242	.	-	0	ID=cds2371;Name=YP_001533714.1;Parent=gene2413;Note=PFAM: protein of unknown function DUF839 KEGG: rde:RD1_0767 hypothetical protein COG3211: Predicted phosphatase;Dbxref=Genbank:YP_001533714.1,GeneID:5714032;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533714.1;transl_table=11
NC_009952.1	RefSeq	gene	2512525	2513574	.	+	.	ID=gene2414;Name=alr;Dbxref=GeneID:5714033;gbkey=Gene;gene=alr;locus_tag=Dshi_2378
NC_009952.1	RefSeq	CDS	2512525	2513574	.	+	0	ID=cds2372;Name=YP_001533715.1;Parent=gene2414;Note=Swiss-Prot: Q92R07-Alanine racemase alr TIGRFAM: alanine racemase PFAM: alanine racemase domain protein;Dbxref=Genbank:YP_001533715.1,GeneID:5714033;gbkey=CDS;gene=alr;product=alanine racemase;protein_id=YP_001533715.1;transl_table=11
NC_009952.1	RefSeq	gene	2513571	2514347	.	+	.	ID=gene2415;Name=alr;Dbxref=GeneID:5714034;gbkey=Gene;gene=alr;locus_tag=Dshi_2379
NC_009952.1	RefSeq	CDS	2513571	2514347	.	+	0	ID=cds2373;Name=YP_001533716.1;Parent=gene2415;Note=Swiss-Prot: P64606-UPF0393 inner membrane protein yrbE TIGR00056: conserved hypothetical integral membrane protein PFAM: protein of unknown function DUF140 COG0767: ABC-type transport system involved in resistance to organic solvents%2C permease component%3B similar to UPF0393 inner membrane protein yrbE;Dbxref=Genbank:YP_001533716.1,GeneID:5714034;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533716.1;transl_table=11
NC_009952.1	RefSeq	gene	2514344	2515117	.	+	.	ID=gene2416;Name=Dshi_2380;Dbxref=GeneID:5714035;gbkey=Gene;locus_tag=Dshi_2380
NC_009952.1	RefSeq	CDS	2514344	2515117	.	+	0	ID=cds2374;Name=YP_001533717.1;Parent=gene2416;Note=Swiss-Prot: P63386-Uncharacterized ABC transporter ATP-binding protein yrbF COG1127: ABC-type transport system involved in resistance to organic solvents%2C ATPase component;Dbxref=Genbank:YP_001533717.1,GeneID:5714035;gbkey=CDS;product=ABC transporter;protein_id=YP_001533717.1;transl_table=11
NC_009952.1	RefSeq	gene	2515206	2515292	.	-	.	ID=gene2417;Name=Dshi_6043;Dbxref=GeneID:5714036;gbkey=Gene;locus_tag=Dshi_6043
NC_009952.1	RefSeq	tRNA	2515206	2515292	.	-	.	ID=rna42;Parent=gene2417;Dbxref=GeneID:5714036;codons=17;gbkey=tRNA;product=tRNA-Leu
NC_009952.1	RefSeq	exon	2515206	2515292	.	-	.	ID=id46;Parent=rna42;Dbxref=GeneID:5714036;codons=17;gbkey=tRNA;product=tRNA-Leu
NC_009952.1	RefSeq	gene	2515483	2516145	.	+	.	ID=gene2418;Name=lipB;Dbxref=GeneID:5714037;gbkey=Gene;gene=lipB;locus_tag=Dshi_2381
NC_009952.1	RefSeq	CDS	2515483	2516145	.	+	0	ID=cds2375;Name=YP_001533718.1;Parent=gene2418;Note=lipoyl%2Foctanoyltransferase%3B catalyzes the transfer of the lipoyl%2Foctanoyl moiety of lipoyl%2Foctanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein;Dbxref=Genbank:YP_001533718.1,GeneID:5714037;gbkey=CDS;gene=lipB;product=lipoate-protein ligase B;protein_id=YP_001533718.1;transl_table=11
NC_009952.1	RefSeq	gene	2516182	2516721	.	+	.	ID=gene2419;Name=Dshi_2382;Dbxref=GeneID:5714038;gbkey=Gene;locus_tag=Dshi_2382
NC_009952.1	RefSeq	CDS	2516182	2516721	.	+	0	ID=cds2376;Name=YP_001533719.1;Parent=gene2419;Dbxref=Genbank:YP_001533719.1,GeneID:5714038;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533719.1;transl_table=11
NC_009952.1	RefSeq	gene	2517133	2518809	.	+	.	ID=gene2420;Name=ctaD;Dbxref=GeneID:5714039;gbkey=Gene;gene=ctaD;locus_tag=Dshi_2383
NC_009952.1	RefSeq	CDS	2517133	2518809	.	+	0	ID=cds2377;Name=YP_001533720.1;Parent=gene2420;Note=Swiss-Prot: P33517- Cytochrome c oxidase subunit 1 ctaD TIGRFAM: Cytochrome c oxidase subunit I type PFAM: cytochrome c oxidase subunit I;Dbxref=Genbank:YP_001533720.1,GeneID:5714039;gbkey=CDS;gene=ctaD;product=cytochrome c oxidase subunit 1;protein_id=YP_001533720.1;transl_table=11
NC_009952.1	RefSeq	gene	2518819	2519340	.	+	.	ID=gene2421;Name=Dshi_2384;Dbxref=GeneID:5714040;gbkey=Gene;locus_tag=Dshi_2384
NC_009952.1	RefSeq	CDS	2518819	2519340	.	+	0	ID=cds2378;Name=YP_001533721.1;Parent=gene2421;Dbxref=Genbank:YP_001533721.1,GeneID:5714040;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533721.1;transl_table=11
NC_009952.1	RefSeq	gene	2519748	2520101	.	-	.	ID=gene2422;Name=Dshi_2385;Dbxref=GeneID:5714041;gbkey=Gene;locus_tag=Dshi_2385
NC_009952.1	RefSeq	CDS	2519748	2520101	.	-	0	ID=cds2379;Name=YP_001533722.1;Parent=gene2422;Note=Swiss-Prot:P0ABS1-DnaK suppressor protein dksA COG1734: DnaK suppressor protein%3B related to DnaK suppressor protein;Dbxref=Genbank:YP_001533722.1,GeneID:5714041;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533722.1;transl_table=11
NC_009952.1	RefSeq	gene	2520173	2520634	.	-	.	ID=gene2423;Name=Dshi_2386;Dbxref=GeneID:5714042;gbkey=Gene;locus_tag=Dshi_2386
NC_009952.1	RefSeq	CDS	2520173	2520634	.	-	0	ID=cds2380;Name=YP_001533723.1;Parent=gene2423;Note=COG1610: Uncharacterized conserved protein Swiss-Prot: P54464-Uncharacterized protein yqeY;Dbxref=Genbank:YP_001533723.1,GeneID:5714042;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533723.1;transl_table=11
NC_009952.1	RefSeq	gene	2520801	2521970	.	+	.	ID=gene2424;Name=carA;Dbxref=GeneID:5714043;gbkey=Gene;gene=carA;locus_tag=Dshi_2387
NC_009952.1	RefSeq	CDS	2520801	2521970	.	+	0	ID=cds2381;Name=YP_001533724.1;Parent=gene2424;Note=catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways%3B forms an octamer composed of four CarAB dimers;Dbxref=Genbank:YP_001533724.1,GeneID:5714043;gbkey=CDS;gene=carA;product=carbamoyl phosphate synthase small subunit;protein_id=YP_001533724.1;transl_table=11
NC_009952.1	RefSeq	gene	2522050	2523957	.	+	.	ID=gene2425;Name=Dshi_2388;Dbxref=GeneID:5714044;gbkey=Gene;locus_tag=Dshi_2388
NC_009952.1	RefSeq	CDS	2522050	2523957	.	+	0	ID=cds2382;Name=YP_001533725.1;Parent=gene2425;Note=PFAM: glycosyl transferase family 2 Swiss-Prot: P75905-Biofilm PGA synthesis N-glycosyltransferase pgaC COG1215: Glycosyltransferases%2C probably involved in cell wall biogenesis%3B family 2;Dbxref=Genbank:YP_001533725.1,GeneID:5714044;gbkey=CDS;product=glycosyl transferase family protein;protein_id=YP_001533725.1;transl_table=11
NC_009952.1	RefSeq	gene	2523970	2524611	.	-	.	ID=gene2426;Name=Dshi_2389;Dbxref=GeneID:5714045;gbkey=Gene;locus_tag=Dshi_2389
NC_009952.1	RefSeq	CDS	2523970	2524611	.	-	0	ID=cds2383;Name=YP_001533726.1;Parent=gene2426;Note=Swiss-Prot: P76114-Uncharacterized HTH-type transcriptional regulator PFAM: regulatory protein GntR HTH%3B GntR domain protein KEGG: sil:SPO1375 transcriptional regulator%2C GntR family%3B GntR family;Dbxref=Genbank:YP_001533726.1,GeneID:5714045;gbkey=CDS;product=putative transcriptional regulator;protein_id=YP_001533726.1;transl_table=11
NC_009952.1	RefSeq	gene	2524704	2525351	.	+	.	ID=gene2427;Name=Dshi_2390;Dbxref=GeneID:5714046;gbkey=Gene;locus_tag=Dshi_2390
NC_009952.1	RefSeq	CDS	2524704	2525351	.	+	0	ID=cds2384;Name=YP_001533727.1;Parent=gene2427;Note=TIGRFAM: HAD-superfamily hydrolase%2C subfamily IA%2C variant 3%3B pyrimidine 5-nucleotidase PFAM: Haloacid dehalogenase domain protein hydrolase KEGG: sil:SPO1374 pyrimidine 5-nucleotidase;Dbxref=Genbank:YP_001533727.1,GeneID:5714046;gbkey=CDS;product=putative pyrimidine 5%27-nucleotidase;protein_id=YP_001533727.1;transl_table=11
NC_009952.1	RefSeq	gene	2525481	2525726	.	+	.	ID=gene2428;Name=Dshi_2391;Dbxref=GeneID:5714047;gbkey=Gene;locus_tag=Dshi_2391
NC_009952.1	RefSeq	CDS	2525481	2525726	.	+	0	ID=cds2385;Name=YP_001533728.1;Parent=gene2428;Dbxref=Genbank:YP_001533728.1,GeneID:5714047;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533728.1;transl_table=11
NC_009952.1	RefSeq	gene	2525802	2527001	.	+	.	ID=gene2429;Name=Dshi_2392;Dbxref=GeneID:5714048;gbkey=Gene;locus_tag=Dshi_2392
NC_009952.1	RefSeq	CDS	2525802	2527001	.	+	0	ID=cds2386;Name=YP_001533729.1;Parent=gene2429;Note=Swiss-Prot: P75728-2-octaprenyl-3-methyl-6-methoxy-1%2C4-benzoquinol hydroxylase%2C ubiF TIGRFAM: Ubiquinone biosynthesis hydroxylase%2C UbiH%2FUbiF%2FVisC%2FCOQ6 family PFAM: monooxygenase FAD-binding%3B FAD dependent oxidoreductase KEGG: sil:SPO1371 2-octaprenyl-6-methoxyphenol hydroxylase%2C putative%3B ubiF;Dbxref=Genbank:YP_001533729.1,GeneID:5714048;gbkey=CDS;product=2-octaprenyl-6-methoxyphenyl hydroxylase;protein_id=YP_001533729.1;transl_table=11
NC_009952.1	RefSeq	gene	2527234	2528364	.	-	.	ID=gene2430;Name=Dshi_2393;Dbxref=GeneID:5714049;gbkey=Gene;locus_tag=Dshi_2393
NC_009952.1	RefSeq	CDS	2527234	2528364	.	-	0	ID=cds2387;Name=YP_001533730.1;Parent=gene2430;Note=PFAM: Aminotransferase class-V KEGG: rde:RD1_1957 aminotransferase family protein%2C putative COG0075: Serine-pyruvate aminotransferase%2Farchaeal aspartate aminotransferase%3B class 5;Dbxref=Genbank:YP_001533730.1,GeneID:5714049;gbkey=CDS;product=aminotransferase;protein_id=YP_001533730.1;transl_table=11
NC_009952.1	RefSeq	gene	2528605	2529063	.	-	.	ID=gene2431;Name=Dshi_2394;Dbxref=GeneID:5714050;gbkey=Gene;locus_tag=Dshi_2394
NC_009952.1	RefSeq	CDS	2528605	2529063	.	-	0	ID=cds2388;Name=YP_001533731.1;Parent=gene2431;Note=PFAM: regulatory protein AsnC%2FLrp family%3B regulatory protein ArsR KEGG: sil:SPO1368 transcriptional regulator%2C AsnC family COG1522: Transcriptional regulators%3B AsnC family;Dbxref=Genbank:YP_001533731.1,GeneID:5714050;gbkey=CDS;product=transcriptional regulator;protein_id=YP_001533731.1;transl_table=11
NC_009952.1	RefSeq	gene	2529060	2529518	.	-	.	ID=gene2432;Name=Dshi_2395;Dbxref=GeneID:5714051;gbkey=Gene;locus_tag=Dshi_2395
NC_009952.1	RefSeq	CDS	2529060	2529518	.	-	0	ID=cds2389;Name=YP_001533732.1;Parent=gene2432;Note=Swiss-Prot: P0ACJ5-Uncharacterized HTH-type transcriptional regulator ybaO PFAM: regulatory protein AsnC%2FLrp family KEGG: sil:SPO1367 transcriptional regulator%2C AsnC family%3B AsnC family;Dbxref=Genbank:YP_001533732.1,GeneID:5714051;gbkey=CDS;product=transcriptional regulator;protein_id=YP_001533732.1;transl_table=11
NC_009952.1	RefSeq	gene	2529653	2530675	.	+	.	ID=gene2433;Name=ilvC;Dbxref=GeneID:5714052;gbkey=Gene;gene=ilvC;locus_tag=Dshi_2396
NC_009952.1	RefSeq	CDS	2529653	2530675	.	+	0	ID=cds2390;Name=YP_001533733.1;Parent=gene2433;Note=catalyzes the formation of %28R%29-2%2C3-dihydroxy-3-methylbutanoate from %28S%29-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis;Dbxref=Genbank:YP_001533733.1,GeneID:5714052;gbkey=CDS;gene=ilvC;product=ketol-acid reductoisomerase;protein_id=YP_001533733.1;transl_table=11
NC_009952.1	RefSeq	gene	2531044	2532387	.	-	.	ID=gene2434;Name=glmM;Dbxref=GeneID:5714053;gbkey=Gene;gene=glmM;locus_tag=Dshi_2397
NC_009952.1	RefSeq	CDS	2531044	2532387	.	-	0	ID=cds2391;Name=YP_001533734.1;Parent=gene2434;Note=catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate;Dbxref=Genbank:YP_001533734.1,GeneID:5714053;gbkey=CDS;gene=glmM;product=phosphoglucosamine mutase;protein_id=YP_001533734.1;transl_table=11
NC_009952.1	RefSeq	gene	2532406	2533419	.	-	.	ID=gene2435;Name=folP;Dbxref=GeneID:5714054;gbkey=Gene;gene=folP;locus_tag=Dshi_2398
NC_009952.1	RefSeq	CDS	2532406	2533419	.	-	0	ID=cds2392;Name=YP_001533735.1;Parent=gene2435;Note=Swiss-Prot: P0AC13-Dihydropteroate synthase folP TIGRFAM: dihydropteroate synthase PFAM: dihydropteroate synthase DHPS;Dbxref=Genbank:YP_001533735.1,GeneID:5714054;gbkey=CDS;gene=folP;product=dihydropteroate synthase;protein_id=YP_001533735.1;transl_table=11
NC_009952.1	RefSeq	gene	2533430	2534281	.	-	.	ID=gene2436;Name=Dshi_2399;Dbxref=GeneID:5714055;gbkey=Gene;locus_tag=Dshi_2399
NC_009952.1	RefSeq	CDS	2533430	2534281	.	-	0	ID=cds2393;Name=YP_001533736.1;Parent=gene2436;Note=Swiss-Prot: Q9X8I0-Dihydroneopterin aldolase folB PFAM: dihydroneopterin aldolase TIGR00525: dihydroneopterin aldolase TIGR00526: FolB domain;Dbxref=Genbank:YP_001533736.1,GeneID:5714055;gbkey=CDS;product=putative dihydroneopterin aldolase;protein_id=YP_001533736.1;transl_table=11
NC_009952.1	RefSeq	gene	2534372	2535064	.	-	.	ID=gene2437;Name=Dshi_2400;Dbxref=GeneID:5714056;gbkey=Gene;locus_tag=Dshi_2400
NC_009952.1	RefSeq	CDS	2534372	2535064	.	-	0	ID=cds2394;Name=YP_001533737.1;Parent=gene2437;Note=PFAM: cell wall hydrolase SleB KEGG: sit:TM1040_2308 cell wall hydrolase%2C SleB COG3773: Cell wall hydrolyses involved in spore germination%3B related to cell wall hydrolase;Dbxref=Genbank:YP_001533737.1,GeneID:5714056;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533737.1;transl_table=11
NC_009952.1	RefSeq	gene	2535240	2537828	.	-	.	ID=gene2438;Name=Dshi_2401;Dbxref=GeneID:5714057;gbkey=Gene;locus_tag=Dshi_2401
NC_009952.1	RefSeq	CDS	2535240	2537828	.	-	0	ID=cds2395;Name=YP_001533738.1;Parent=gene2438;Note=catalyzes the formation of phosphoenolpyruvate from pyruvate;Dbxref=Genbank:YP_001533738.1,GeneID:5714057;gbkey=CDS;product=pyruvate phosphate dikinase;protein_id=YP_001533738.1;transl_table=11
NC_009952.1	RefSeq	gene	2537985	2540147	.	-	.	ID=gene2439;Name=glyS;Dbxref=GeneID:5714058;gbkey=Gene;gene=glyS;locus_tag=Dshi_2402
NC_009952.1	RefSeq	CDS	2537985	2540147	.	-	0	ID=cds2396;Name=YP_001533739.1;Parent=gene2439;Note=Swiss-Prot: Q986B5-Glycyl-tRNA synthetase beta chain glyS TIGRFAM: glycyl-tRNA synthetase%2C beta subunit;Dbxref=Genbank:YP_001533739.1,GeneID:5714058;gbkey=CDS;gene=glyS;product=glycyl-tRNA synthetase subunit beta;protein_id=YP_001533739.1;transl_table=11
NC_009952.1	RefSeq	gene	2540151	2540627	.	-	.	ID=gene2440;Name=Dshi_2403;Dbxref=GeneID:5714059;gbkey=Gene;locus_tag=Dshi_2403
NC_009952.1	RefSeq	CDS	2540151	2540627	.	-	0	ID=cds2397;Name=YP_001533740.1;Parent=gene2440;Dbxref=Genbank:YP_001533740.1,GeneID:5714059;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533740.1;transl_table=11
NC_009952.1	RefSeq	gene	2540624	2541607	.	-	.	ID=gene2441;Name=glyQ;Dbxref=GeneID:5714060;gbkey=Gene;gene=glyQ;locus_tag=Dshi_2404
NC_009952.1	RefSeq	CDS	2540624	2541607	.	-	0	ID=cds2398;Name=YP_001533741.1;Parent=gene2441;Note=glycine--tRNA ligase alpha chain%3B GlyRS%3B class II aminoacyl tRNA synthetase%3B tetramer of alpha%282%29beta%282%29%3B catalyzes a two-step reaction%3B first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP%3B second by transfer of the aminoacyl-adenylate to its tRNA;Dbxref=Genbank:YP_001533741.1,GeneID:5714060;gbkey=CDS;gene=glyQ;product=glycyl-tRNA synthetase subunit alpha;protein_id=YP_001533741.1;transl_table=11
NC_009952.1	RefSeq	gene	2541693	2543423	.	+	.	ID=gene2442;Name=Dshi_2405;Dbxref=GeneID:5714061;gbkey=Gene;locus_tag=Dshi_2405
NC_009952.1	RefSeq	CDS	2541693	2543423	.	+	0	ID=cds2399;Name=YP_001533742.1;Parent=gene2442;Note=Swiss-Prot: P55377-Uncharacterized protein y4bJ;Dbxref=Genbank:YP_001533742.1,GeneID:5714061;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533742.1;transl_table=11
NC_009952.1	RefSeq	gene	2543430	2544878	.	-	.	ID=gene2443;Name=trkG;Dbxref=GeneID:5714062;gbkey=Gene;gene=trkG;locus_tag=Dshi_2406
NC_009952.1	RefSeq	CDS	2543430	2544878	.	-	0	ID=cds2400;Name=YP_001533743.1;Parent=gene2443;Note=Swiss-Prot: P23849-Trk system potassium uptake protein trkG PFAM: cation transporter KEGG: rde:RD1_1942 trk system potassium uptake protein COG0168: Trk-type K%2B transport systems%2C membrane components;Dbxref=Genbank:YP_001533743.1,GeneID:5714062;gbkey=CDS;gene=trkG;product=Trk system potassium uptake protein;protein_id=YP_001533743.1;transl_table=11
NC_009952.1	RefSeq	gene	2544924	2545631	.	-	.	ID=gene2444;Name=Dshi_2407;Dbxref=GeneID:5714063;gbkey=Gene;locus_tag=Dshi_2407
NC_009952.1	RefSeq	CDS	2544924	2545631	.	-	0	ID=cds2401;Name=YP_001533744.1;Parent=gene2444;Note=Swiss-Prot: P77526-Uncharacterized GST-like protein PFAM: Glutathione S-transferase domain KEGG: rde:RD1_1937 glutathione S-transferase%2C putative;Dbxref=Genbank:YP_001533744.1,GeneID:5714063;gbkey=CDS;product=putative glutathione S-transferase;protein_id=YP_001533744.1;transl_table=11
NC_009952.1	RefSeq	gene	2546843	2548021	.	+	.	ID=gene2445;Name=Dshi_2410;Dbxref=GeneID:5714066;gbkey=Gene;locus_tag=Dshi_2410
NC_009952.1	RefSeq	CDS	2546843	2548021	.	+	0	ID=cds2402;Name=YP_001533745.1;Parent=gene2445;Note=Swiss-Prot: P55218-O-succinylhomoserine sulfhydrylase P00935-Cystathionine gamma-synthase TIGRFAM: O-succinylhomoserine sulfhydrylase PFAM: Cys%2FMet metabolism PLP-dependent enzyme;Dbxref=Genbank:YP_001533745.1,GeneID:5714066;gbkey=CDS;product=trans-sulfuration enzyme family protein;protein_id=YP_001533745.1;transl_table=11
NC_009952.1	RefSeq	gene	2548194	2549297	.	+	.	ID=gene2446;Name=Dshi_2411;Dbxref=GeneID:5714067;gbkey=Gene;locus_tag=Dshi_2411
NC_009952.1	RefSeq	CDS	2548194	2549297	.	+	0	ID=cds2403;Name=YP_001533746.1;Parent=gene2446;Note=similar protein in Methanocaldococcus converts GTP to 7%2C8-dihydro-D-neopterin 2%27%2C3%27-cyclic phosphate as the first step in methanopterin biosynthesis;Dbxref=Genbank:YP_001533746.1,GeneID:5714067;gbkey=CDS;product=putative GTP cyclohydrolase;protein_id=YP_001533746.1;transl_table=11
NC_009952.1	RefSeq	gene	2549412	2551100	.	-	.	ID=gene2447;Name=Dshi_2412;Dbxref=GeneID:5714068;gbkey=Gene;locus_tag=Dshi_2412
NC_009952.1	RefSeq	CDS	2549412	2551100	.	-	0	ID=cds2404;Name=YP_001533747.1;Parent=gene2447;Note=Swiss-Prot: Q8XTT4-Putative chloride channel protein clcB-like %2F P76175-Voltage-gated ClC-type chloride channel%2C clcB PFAM: Chloride channel core KEGG: jan:Jann_2746 Cl-channel%2C voltage gated%3B clcB-like;Dbxref=Genbank:YP_001533747.1,GeneID:5714068;gbkey=CDS;product=putative chloride channel protein;protein_id=YP_001533747.1;transl_table=11
NC_009952.1	RefSeq	gene	2551263	2552924	.	-	.	ID=gene2448;Name=recN;Dbxref=GeneID:5714069;gbkey=Gene;gene=recN;locus_tag=Dshi_2413
NC_009952.1	RefSeq	CDS	2551263	2552924	.	-	0	ID=cds2405;Name=YP_001533748.1;Parent=gene2448;Note=Swiss-Prot: P05824-DNA repair protein recN TIGRFAM: DNA repair protein RecN PFAM: SMC domain protein KEGG: sil:SPO1207 DNA repair protein RecN;Dbxref=Genbank:YP_001533748.1,GeneID:5714069;gbkey=CDS;gene=recN;product=DNA repair protein;protein_id=YP_001533748.1;transl_table=11
NC_009952.1	RefSeq	gene	2553013	2553852	.	-	.	ID=gene2449;Name=Dshi_2414;Dbxref=GeneID:5714070;gbkey=Gene;locus_tag=Dshi_2414
NC_009952.1	RefSeq	CDS	2553013	2553852	.	-	0	ID=cds2406;Name=YP_001533749.1;Parent=gene2449;Note=Swiss-Prot: P0AC02-UPF0169 lipoprotein yfiO %5BPrecursor%5D;Dbxref=Genbank:YP_001533749.1,GeneID:5714070;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533749.1;transl_table=11
NC_009952.1	RefSeq	gene	2553954	2554874	.	-	.	ID=gene2450;Name=lpxC;Dbxref=GeneID:5714071;gbkey=Gene;gene=lpxC;locus_tag=Dshi_2415
NC_009952.1	RefSeq	CDS	2553954	2554874	.	-	0	ID=cds2407;Name=YP_001533750.1;Parent=gene2450;Note=zinc-dependent%3B catalyzes the deacetylation of UDP-%283-O-acyl%29-N-acetylglucosamine to UDP-3-O-%283-hydroxytetradecanoyl%29-glucosamine in the second step of lipid A biosynthesis;Dbxref=Genbank:YP_001533750.1,GeneID:5714071;gbkey=CDS;gene=lpxC;product=UDP-3-O-%5B3-hydroxymyristoyl%5D N-acetylglucosamine deacetylase;protein_id=YP_001533750.1;transl_table=11
NC_009952.1	RefSeq	gene	2555094	2556689	.	-	.	ID=gene2451;Name=ftsZ;Dbxref=GeneID:5714072;gbkey=Gene;gene=ftsZ;locus_tag=Dshi_2416
NC_009952.1	RefSeq	CDS	2555094	2556689	.	-	0	ID=cds2408;Name=YP_001533751.1;Parent=gene2451;Note=GTPase%3B similar structure to tubulin%3B forms ring-shaped polymers at the site of cell division%3B other proteins such as FtsA%2C ZipA%2C and ZapA%2C interact with and regulate FtsZ function;Dbxref=Genbank:YP_001533751.1,GeneID:5714072;gbkey=CDS;gene=ftsZ;product=cell division protein FtsZ;protein_id=YP_001533751.1;transl_table=11
NC_009952.1	RefSeq	gene	2557114	2558451	.	-	.	ID=gene2452;Name=ftsA;Dbxref=GeneID:5714073;gbkey=Gene;gene=ftsA;locus_tag=Dshi_2417
NC_009952.1	RefSeq	CDS	2557114	2558451	.	-	0	ID=cds2409;Name=YP_001533752.1;Parent=gene2452;Note=Swiss-Prot: P0ABH0-Cell division protein ftsA TIGR01174: cell division protein FtsA%3B colocated with ftsZ and ftsQ;Dbxref=Genbank:YP_001533752.1,GeneID:5714073;gbkey=CDS;gene=ftsA;product=cell division protein;protein_id=YP_001533752.1;transl_table=11
NC_009952.1	RefSeq	gene	2558448	2559341	.	-	.	ID=gene2453;Name=ftsA;Dbxref=GeneID:5714074;gbkey=Gene;gene=ftsA;locus_tag=Dshi_2418
NC_009952.1	RefSeq	CDS	2558448	2559341	.	-	0	ID=cds2410;Name=YP_001533753.1;Parent=gene2453;Note=Swiss-Prot: Q9X5H9-Cell division protein ftsQ homolog PFAM: cell division protein FtsQ KEGG: sil:SPO1202 cell division protein FtsQ COG1589: Cell division septal protein%3B colocated with ftsZ and ftsA;Dbxref=Genbank:YP_001533753.1,GeneID:5714074;gbkey=CDS;product=putative cell division protein FtsQ;protein_id=YP_001533753.1;transl_table=11
NC_009952.1	RefSeq	gene	2559329	2560255	.	-	.	ID=gene2454;Name=ddl;Dbxref=GeneID:5714075;gbkey=Gene;gene=ddl;locus_tag=Dshi_2419
NC_009952.1	RefSeq	CDS	2559329	2560255	.	-	0	ID=cds2411;Name=YP_001533754.1;Parent=gene2454;Note=D-alanine--D-alanine ligase%3B DdlA%3B DdlB%3B cytoplasmic%3B catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis%3B there are two forms of this enzyme in Escherichia coli;Dbxref=Genbank:YP_001533754.1,GeneID:5714075;gbkey=CDS;gene=ddl;product=D-alanine--D-alanine ligase;protein_id=YP_001533754.1;transl_table=11
NC_009952.1	RefSeq	gene	2560320	2561243	.	-	.	ID=gene2455;Name=murB;Dbxref=GeneID:5714076;gbkey=Gene;gene=murB;locus_tag=Dshi_2420
NC_009952.1	RefSeq	CDS	2560320	2561243	.	-	0	ID=cds2412;Name=YP_001533755.1;Parent=gene2455;Note=catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis;Dbxref=Genbank:YP_001533755.1,GeneID:5714076;gbkey=CDS;gene=murB;product=UDP-N-acetylenolpyruvoylglucosamine reductase;protein_id=YP_001533755.1;transl_table=11
NC_009952.1	RefSeq	gene	2561240	2561506	.	-	.	ID=gene2456;Name=murB;Dbxref=GeneID:5714077;gbkey=Gene;gene=murB;locus_tag=Dshi_2421
NC_009952.1	RefSeq	CDS	2561240	2561506	.	-	0	ID=cds2413;Name=YP_001533756.1;Parent=gene2456;Dbxref=Genbank:YP_001533756.1,GeneID:5714077;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533756.1;transl_table=11
NC_009952.1	RefSeq	gene	2561559	2562971	.	-	.	ID=gene2457;Name=murC;Dbxref=GeneID:5714078;gbkey=Gene;gene=murC;locus_tag=Dshi_2422
NC_009952.1	RefSeq	CDS	2561559	2562971	.	-	0	ID=cds2414;Name=YP_001533757.1;Parent=gene2457;Note=Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis;Dbxref=Genbank:YP_001533757.1,GeneID:5714078;gbkey=CDS;gene=murC;product=UDP-N-acetylmuramate--L-alanine ligase;protein_id=YP_001533757.1;transl_table=11
NC_009952.1	RefSeq	gene	2562998	2564107	.	-	.	ID=gene2458;Name=murG;Dbxref=GeneID:5714079;gbkey=Gene;gene=murG;locus_tag=Dshi_2423
NC_009952.1	RefSeq	CDS	2562998	2564107	.	-	0	ID=cds2415;Name=YP_001533758.1;Parent=gene2458;Note=UDP-N-acetylglucosamine--N-acetylmuramyl-%28pentapeptide%29 pyrophosphoryl-undecaprenol N-acetylglucosamine transferase%3B involved in cell wall formation%3B inner membrane-associated%3B last step of peptidoglycan synthesis;Dbxref=Genbank:YP_001533758.1,GeneID:5714079;gbkey=CDS;gene=murG;product=undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase;protein_id=YP_001533758.1;transl_table=11
NC_009952.1	RefSeq	gene	2564111	2565277	.	-	.	ID=gene2459;Name=Dshi_2424;Dbxref=GeneID:5714080;gbkey=Gene;locus_tag=Dshi_2424
NC_009952.1	RefSeq	CDS	2564111	2565277	.	-	0	ID=cds2416;Name=YP_001533759.1;Parent=gene2459;Note=Swiss-Prot: P0ABG4-Cell division protein ftsW TIGRFAM: cell division protein FtsW PFAM: cell cycle protein%3B colocated with ftsA%2CftsZ and %28putative%29ftsQ;Dbxref=Genbank:YP_001533759.1,GeneID:5714080;gbkey=CDS;product=putative cell division protein ftsW;protein_id=YP_001533759.1;transl_table=11
NC_009952.1	RefSeq	gene	2565692	2567371	.	+	.	ID=gene2460;Name=Dshi_2425;Dbxref=GeneID:5714081;gbkey=Gene;locus_tag=Dshi_2425
NC_009952.1	RefSeq	CDS	2565692	2567371	.	+	0	ID=cds2417;Name=YP_001533760.1;Parent=gene2460;Note=PFAM: Hemolysin-type calcium-binding region;Dbxref=Genbank:YP_001533760.1,GeneID:5714081;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533760.1;transl_table=11
NC_009952.1	RefSeq	gene	2567452	2568609	.	-	.	ID=gene2461;Name=Dshi_2426;Dbxref=GeneID:5714082;gbkey=Gene;locus_tag=Dshi_2426
NC_009952.1	RefSeq	CDS	2567452	2568609	.	-	0	ID=cds2418;Name=YP_001533761.1;Parent=gene2461;Note=PFAM: peptidase S8 %2F subtilase family KEGG: rde:RD1_4002 subtilisin carlsberg precursor%2C putative PTHR10795: subtilisin-related serine protease%3B related to subtilase;Dbxref=Genbank:YP_001533761.1,GeneID:5714082;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533761.1;transl_table=11
NC_009952.1	RefSeq	gene	2568795	2569361	.	+	.	ID=gene2462;Name=Dshi_2427;Dbxref=GeneID:5714083;gbkey=Gene;locus_tag=Dshi_2427
NC_009952.1	RefSeq	CDS	2568795	2569361	.	+	0	ID=cds2419;Name=YP_001533762.1;Parent=gene2462;Note=KEGG: rde:RD1_4000 hypothetical protein;Dbxref=Genbank:YP_001533762.1,GeneID:5714083;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533762.1;transl_table=11
NC_009952.1	RefSeq	gene	2569367	2569903	.	-	.	ID=gene2463;Name=Dshi_2428;Dbxref=GeneID:5714084;gbkey=Gene;locus_tag=Dshi_2428
NC_009952.1	RefSeq	CDS	2569367	2569903	.	-	0	ID=cds2420;Name=YP_001533763.1;Parent=gene2463;Note=Swiss-Prot: P0AGB6-RNA polymerase sigma-E factor rpoE TIGRFAM: RNA polymerase sigma-70 PFAM: sigma-70 region 2 domain protein%3B sigma-70 region 4 domain protein%3B Sigma-70 region 4 type 2%3B sigma-24 subunit%2C ECF subfamily;Dbxref=Genbank:YP_001533763.1,GeneID:5714084;gbkey=CDS;product=RNA polymerase;protein_id=YP_001533763.1;transl_table=11
NC_009952.1	RefSeq	gene	2570227	2571612	.	-	.	ID=gene2464;Name=Dshi_2429;Dbxref=GeneID:5714085;gbkey=Gene;locus_tag=Dshi_2429
NC_009952.1	RefSeq	CDS	2570227	2571612	.	-	0	ID=cds2421;Name=YP_001533764.1;Parent=gene2464;Note=Swiss-Prot: P11553- L-fuculokinase fucK PFAM: carbohydrate kinase FGGY KEGG: rde:RD1_3075 carbohydrate kinases%2C putative COG1070: Sugar %28pentulose and hexulose%29 kinases%3B FGGY family;Dbxref=Genbank:YP_001533764.1,GeneID:5714085;gbkey=CDS;product=carbohydrate kinase;protein_id=YP_001533764.1;transl_table=11
NC_009952.1	RefSeq	gene	2571609	2571947	.	-	.	ID=gene2465;Name=Dshi_2430;Dbxref=GeneID:5714086;gbkey=Gene;locus_tag=Dshi_2430
NC_009952.1	RefSeq	CDS	2571609	2571947	.	-	0	ID=cds2422;Name=YP_001533765.1;Parent=gene2465;Note=TIGRFAM: L-rhamnose 1-epimerase PFAM: protein of unknown function DUF718 KEGG: jan:Jann_2598 protein of unknown function DUF718;Dbxref=Genbank:YP_001533765.1,GeneID:5714086;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533765.1;transl_table=11
NC_009952.1	RefSeq	gene	2571923	2572909	.	-	.	ID=gene2466;Name=Dshi_2431;Dbxref=GeneID:5714087;gbkey=Gene;locus_tag=Dshi_2431
NC_009952.1	RefSeq	CDS	2571923	2572909	.	-	0	ID=cds2423;Name=YP_001533766.1;Parent=gene2466;Note=Swiss-Prot: P0AE26- L-arabinose transport system permease protein araH PFAM: inner-membrane translocator KEGG: jan:Jann_2597 inner-membrane translocator;Dbxref=Genbank:YP_001533766.1,GeneID:5714087;gbkey=CDS;product=%28monosaccharide%29 transport system permease;protein_id=YP_001533766.1;transl_table=11
NC_009952.1	RefSeq	gene	2572906	2573889	.	-	.	ID=gene2467;Name=Dshi_2432;Dbxref=GeneID:5714088;gbkey=Gene;locus_tag=Dshi_2432
NC_009952.1	RefSeq	CDS	2572906	2573889	.	-	0	ID=cds2424;Name=YP_001533767.1;Parent=gene2467;Note=Swiss-Prot: P77672-Inner membrane ABC transporter permease protein ydeY PFAM: inner-membrane translocator KEGG: rde:RD1_3078 ribose ABC transporter%2C permease protein;Dbxref=Genbank:YP_001533767.1,GeneID:5714088;gbkey=CDS;product=putative-binding-protein-dependent transport system permease;protein_id=YP_001533767.1;transl_table=11
NC_009952.1	RefSeq	gene	2573902	2575434	.	-	.	ID=gene2468;Name=rbsA1;Dbxref=GeneID:5714089;gbkey=Gene;gene=rbsA1;locus_tag=Dshi_2433
NC_009952.1	RefSeq	CDS	2573902	2575434	.	-	0	ID=cds2425;Name=YP_001533768.1;Parent=gene2468;Note=Swiss-Prot: P04983-Ribose import ATP-binding protein rbsA COG1129: ABC-type sugar transport system%2C ATPase component PFAM: ABC transporter related SMART: AAA ATPase;Dbxref=Genbank:YP_001533768.1,GeneID:5714089;gbkey=CDS;gene=rbsA1;product=ribose import ATP-binding protein;protein_id=YP_001533768.1;transl_table=11
NC_009952.1	RefSeq	gene	2575507	2576508	.	-	.	ID=gene2469;Name=Dshi_2434;Dbxref=GeneID:5714090;gbkey=Gene;locus_tag=Dshi_2434
NC_009952.1	RefSeq	CDS	2575507	2576508	.	-	0	ID=cds2426;Name=YP_001533769.1;Parent=gene2469;Note=TIGRFAM: rhamnose ABC transporter%2C periplasmic rhamnose-binding protein KEGG: rde:RD1_3080 sugar ABC transporter%2C ATP binding protein%2C putative COG1879: ABC-type sugar transport system%2C periplasmic component;Dbxref=Genbank:YP_001533769.1,GeneID:5714090;gbkey=CDS;product=putative periplasmic-binding abc transporter protein;protein_id=YP_001533769.1;transl_table=11
NC_009952.1	RefSeq	gene	2576547	2577401	.	-	.	ID=gene2470;Name=Dshi_2435;Dbxref=GeneID:5714091;gbkey=Gene;locus_tag=Dshi_2435
NC_009952.1	RefSeq	CDS	2576547	2577401	.	-	0	ID=cds2427;Name=YP_001533770.1;Parent=gene2470;Note=Swiss-Prot: P0A9W0-HTH-type transcriptional regulator PFAM: regulatory protein DeoR KEGG: jan:Jann_2593 transcriptional regulator%2C DeoR family COG1349: Transcriptional regulators of sugar metabolism%3B colocated with sugar transport system%3B DeoR family;Dbxref=Genbank:YP_001533770.1,GeneID:5714091;gbkey=CDS;product=transcriptional regulator;protein_id=YP_001533770.1;transl_table=11
NC_009952.1	RefSeq	gene	2577535	2579637	.	+	.	ID=gene2471;Name=Dshi_2436;Dbxref=GeneID:5714092;gbkey=Gene;locus_tag=Dshi_2436
NC_009952.1	RefSeq	CDS	2577535	2579637	.	+	0	ID=cds2428;Name=YP_001533771.1;Parent=gene2471;Note=Swiss-Prot: P40747-Uncharacterized oxidoreductase yuxG TIGRFAM: rhamnulose-1-phosphate aldolase%2Falcohol dehydrogenase PFAM: short-chain dehydrogenase%2Freductase SDR%3B KR domain protein KEGG: jan:Jann_2592 short-chain dehydrogenase%2Freductase SDR COG3347: Uncharacterized conserved protein;Dbxref=Genbank:YP_001533771.1,GeneID:5714092;gbkey=CDS;product=short chain dehydrogenase;protein_id=YP_001533771.1;transl_table=11
NC_009952.1	RefSeq	gene	2579647	2580885	.	+	.	ID=gene2472;Name=rhaA;Dbxref=GeneID:5714093;gbkey=Gene;gene=rhaA;locus_tag=Dshi_2437
NC_009952.1	RefSeq	CDS	2579647	2580885	.	+	0	ID=cds2429;Name=YP_001533772.1;Parent=gene2472;Note=catalyzes the formation of L-rhamnulose from L-rhamnose;Dbxref=Genbank:YP_001533772.1,GeneID:5714093;gbkey=CDS;gene=rhaA;product=L-rhamnose isomerase;protein_id=YP_001533772.1;transl_table=11
NC_009952.1	RefSeq	gene	2580993	2581871	.	-	.	ID=gene2473;Name=Dshi_2438;Dbxref=GeneID:5714094;gbkey=Gene;locus_tag=Dshi_2438
NC_009952.1	RefSeq	CDS	2580993	2581871	.	-	0	ID=cds2430;Name=YP_001533773.1;Parent=gene2473;Note=PFAM: amidohydrolase 2 KEGG: pau:PA14_36110 putative hydrolase COG3618: Predicted metal-dependent hydrolase of the TIM-barrel fold;Dbxref=Genbank:YP_001533773.1,GeneID:5714094;gbkey=CDS;product=putative amidohydrolase 2;protein_id=YP_001533773.1;transl_table=11
NC_009952.1	RefSeq	gene	2581868	2583352	.	-	.	ID=gene2474;Name=Dshi_2439;Dbxref=GeneID:5714095;gbkey=Gene;locus_tag=Dshi_2439
NC_009952.1	RefSeq	CDS	2581868	2583352	.	-	0	ID=cds2431;Name=YP_001533774.1;Parent=gene2474;Note=PFAM: protein of unknown function DUF112 transmembrane COG3333: Uncharacterized protein conserved in bacteria;Dbxref=Genbank:YP_001533774.1,GeneID:5714095;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533774.1;transl_table=11
NC_009952.1	RefSeq	gene	2583349	2583807	.	-	.	ID=gene2475;Name=Dshi_2440;Dbxref=GeneID:5714096;gbkey=Gene;locus_tag=Dshi_2440
NC_009952.1	RefSeq	CDS	2583349	2583807	.	-	0	ID=cds2432;Name=YP_001533775.1;Parent=gene2475;Dbxref=Genbank:YP_001533775.1,GeneID:5714096;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533775.1;transl_table=11
NC_009952.1	RefSeq	gene	2583868	2584830	.	-	.	ID=gene2476;Name=Dshi_2441;Dbxref=GeneID:5714097;gbkey=Gene;locus_tag=Dshi_2441
NC_009952.1	RefSeq	CDS	2583868	2584830	.	-	0	ID=cds2433;Name=YP_001533776.1;Parent=gene2476;Note=Swiss-Prot: P0A177-UPF0065 protein in clcB-clcD intergenic region %5BPrecursor%5D PFAM: Bordetella uptake gene %28bug%29 product COG3181: Uncharacterized protein conserved in bacteria%3B similar to UPF0065 protein;Dbxref=Genbank:YP_001533776.1,GeneID:5714097;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533776.1;transl_table=11
NC_009952.1	RefSeq	gene	2584873	2586378	.	-	.	ID=gene2477;Name=aldH1;Dbxref=GeneID:5714098;gbkey=Gene;gene=aldH1;locus_tag=Dshi_2442
NC_009952.1	RefSeq	CDS	2584873	2586378	.	-	0	ID=cds2434;Name=YP_001533777.1;Parent=gene2477;Note=Swiss-Prot: Q56694-NADP-dependent fatty aldehyde dehydrogenase aldH PFAM: aldehyde dehydrogenase KEGG: pde:Pden_4865 aldehyde dehydrogenase;Dbxref=Genbank:YP_001533777.1,GeneID:5714098;gbkey=CDS;gene=aldH1;product=NADP-dependent fatty aldehyde dehydrogenase;protein_id=YP_001533777.1;transl_table=11
NC_009952.1	RefSeq	gene	2586430	2587299	.	-	.	ID=gene2478;Name=Dshi_2443;Dbxref=GeneID:5714099;gbkey=Gene;locus_tag=Dshi_2443
NC_009952.1	RefSeq	CDS	2586430	2587299	.	-	0	ID=cds2435;Name=YP_001533778.1;Parent=gene2478;Note=PTHR22981: 3-hydroxyisobutyrate dehydrogenase-related COG2084: 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases KEGG: sil:SPO2416 3-hydroxyisobutyrate dehydrogenase family protein%3B no well-defined Swiss-Prot hits: P0ABQ2%2C P28811%2C O34948;Dbxref=Genbank:YP_001533778.1,GeneID:5714099;gbkey=CDS;product=3-hydroxyisobutyrate dehydrogenase;protein_id=YP_001533778.1;transl_table=11
NC_009952.1	RefSeq	gene	2587296	2588300	.	-	.	ID=gene2479;Name=pdxA;Dbxref=GeneID:5714100;gbkey=Gene;gene=pdxA;locus_tag=Dshi_2444
NC_009952.1	RefSeq	CDS	2587296	2588300	.	-	0	ID=cds2436;Name=YP_001533779.1;Parent=gene2479;Note=catalyzes oxidation of 4-%28phosphohydroxy%29-L-threonine into 2-amino-3-oxo-4-%28phosphohydroxy%29butyric acid which decarboxylates to form 1-amino-3-%28phosphohydroxy%29propan-2-one %283-amino-2-oxopropyl phosphate%29;Dbxref=Genbank:YP_001533779.1,GeneID:5714100;gbkey=CDS;gene=pdxA;product=4-hydroxythreonine-4-phosphate dehydrogenase;protein_id=YP_001533779.1;transl_table=11
NC_009952.1	RefSeq	gene	2588300	2589013	.	-	.	ID=gene2480;Name=pdxA;Dbxref=GeneID:5714101;gbkey=Gene;gene=pdxA;locus_tag=Dshi_2445
NC_009952.1	RefSeq	CDS	2588300	2589013	.	-	0	ID=cds2437;Name=YP_001533780.1;Parent=gene2480;Note=PFAM: regulatory protein GntR HTH%3B GntR domain protein KEGG: sil:SPO2434 transcriptional regulator%2C GntR family COG1802: Transcriptional regulators%3B GntR family;Dbxref=Genbank:YP_001533780.1,GeneID:5714101;gbkey=CDS;product=transcriptional regulator;protein_id=YP_001533780.1;transl_table=11
NC_009952.1	RefSeq	gene	2589015	2589926	.	-	.	ID=gene2481;Name=Dshi_2446;Dbxref=GeneID:5714102;gbkey=Gene;locus_tag=Dshi_2446
NC_009952.1	RefSeq	CDS	2589015	2589926	.	-	0	ID=cds2438;Name=YP_001533781.1;Parent=gene2481;Note=PFAM: dihydrodipicolinate synthetase Swiss-Prot: O69782-Dihydrodipicolinate synthase KEGG: sil:SPOA0244 dihydrodipicolinate synthase family protein;Dbxref=Genbank:YP_001533781.1,GeneID:5714102;gbkey=CDS;product=dihydrodipicolinate synthase;protein_id=YP_001533781.1;transl_table=11
NC_009952.1	RefSeq	gene	2589923	2591098	.	-	.	ID=gene2482;Name=Dshi_2447;Dbxref=GeneID:5714103;gbkey=Gene;locus_tag=Dshi_2447
NC_009952.1	RefSeq	CDS	2589923	2591098	.	-	0	ID=cds2439;Name=YP_001533782.1;Parent=gene2482;Note=PFAM: Mandelate racemase%2Fmuconate lactonizing protein PTHR13794: enolase superfamily%2C mandelate racemase;Dbxref=Genbank:YP_001533782.1,GeneID:5714103;gbkey=CDS;product=putative mandelate racemase%2Fmuconate lactonizing protein;protein_id=YP_001533782.1;transl_table=11
NC_009952.1	RefSeq	gene	2591102	2592598	.	-	.	ID=gene2483;Name=Dshi_2448;Dbxref=GeneID:5714104;gbkey=Gene;locus_tag=Dshi_2448
NC_009952.1	RefSeq	CDS	2591102	2592598	.	-	0	ID=cds2440;Name=YP_001533783.1;Parent=gene2483;Note=PFAM: protein of unknown function DUF112 transmembrane KEGG: jan:Jann_1159 protein of unknown function DUF112%2C transmembrane COG3333: Uncharacterized protein conserved in bacteria;Dbxref=Genbank:YP_001533783.1,GeneID:5714104;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533783.1;transl_table=11
NC_009952.1	RefSeq	gene	2592604	2593044	.	-	.	ID=gene2484;Name=Dshi_2449;Dbxref=GeneID:5714105;gbkey=Gene;locus_tag=Dshi_2449
NC_009952.1	RefSeq	CDS	2592604	2593044	.	-	0	ID=cds2441;Name=YP_001533784.1;Parent=gene2484;Dbxref=Genbank:YP_001533784.1,GeneID:5714105;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533784.1;transl_table=11
NC_009952.1	RefSeq	gene	2593114	2594058	.	-	.	ID=gene2485;Name=Dshi_2450;Dbxref=GeneID:5714106;gbkey=Gene;locus_tag=Dshi_2450
NC_009952.1	RefSeq	CDS	2593114	2594058	.	-	0	ID=cds2442;Name=YP_001533785.1;Parent=gene2485;Note=PFAM: conserved hypothetical protein KEGG: ecp:ECP_4043 hypothetical protein%3B similar to UPF0065 protein;Dbxref=Genbank:YP_001533785.1,GeneID:5714106;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533785.1;transl_table=11
NC_009952.1	RefSeq	gene	2594434	2595828	.	-	.	ID=gene2486;Name=murD;Dbxref=GeneID:5714107;gbkey=Gene;gene=murD;locus_tag=Dshi_2451
NC_009952.1	RefSeq	CDS	2594434	2595828	.	-	0	ID=cds2443;Name=YP_001533786.1;Parent=gene2486;Note=UDP-N-acetylmuramoylalanine--D-glutamate ligase%3B involved in peptidoglycan biosynthesis%3B cytoplasmic%3B catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation;Dbxref=Genbank:YP_001533786.1,GeneID:5714107;gbkey=CDS;gene=murD;product=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase;protein_id=YP_001533786.1;transl_table=11
NC_009952.1	RefSeq	gene	2596056	2596997	.	-	.	ID=gene2487;Name=Dshi_2452;Dbxref=GeneID:5714108;gbkey=Gene;locus_tag=Dshi_2452
NC_009952.1	RefSeq	CDS	2596056	2596997	.	-	0	ID=cds2444;Name=YP_001533787.1;Parent=gene2487;Note=PFAM: glycoside hydrolase family 25 KEGG: nha:Nham_3711 glycoside hydrolase%2C family 25 COG3757: Lyzozyme M1 %281%2C4-beta-N-acetylmuramidase%29%3B associated with glycoside hydrolase;Dbxref=Genbank:YP_001533787.1,GeneID:5714108;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533787.1;transl_table=11
NC_009952.1	RefSeq	gene	2597049	2598080	.	-	.	ID=gene2488;Name=Dshi_2453;Dbxref=GeneID:5714109;gbkey=Gene;locus_tag=Dshi_2453
NC_009952.1	RefSeq	CDS	2597049	2598080	.	-	0	ID=cds2445;Name=YP_001533788.1;Parent=gene2488;Dbxref=Genbank:YP_001533788.1,GeneID:5714109;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533788.1;transl_table=11
NC_009952.1	RefSeq	gene	2598124	2598690	.	-	.	ID=gene2489;Name=Dshi_2454;Dbxref=GeneID:5714110;gbkey=Gene;locus_tag=Dshi_2454
NC_009952.1	RefSeq	CDS	2598124	2598690	.	-	0	ID=cds2446;Name=YP_001533789.1;Parent=gene2489;Dbxref=Genbank:YP_001533789.1,GeneID:5714110;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533789.1;transl_table=11
NC_009952.1	RefSeq	gene	2598687	2600012	.	-	.	ID=gene2490;Name=Dshi_2455;Dbxref=GeneID:5714111;gbkey=Gene;locus_tag=Dshi_2455
NC_009952.1	RefSeq	CDS	2598687	2600012	.	-	0	ID=cds2447;Name=YP_001533790.1;Parent=gene2490;Note=PFAM: AAA ATPase central domain protein SMART: AAA ATPase KEGG: ppd:Ppro_0362 AAA ATPase%2C central domain protein%3B AAA family;Dbxref=Genbank:YP_001533790.1,GeneID:5714111;gbkey=CDS;product=putative ATPase;protein_id=YP_001533790.1;transl_table=11
NC_009952.1	RefSeq	gene	2600009	2604343	.	-	.	ID=gene2491;Name=Dshi_2456;Dbxref=GeneID:5714112;gbkey=Gene;locus_tag=Dshi_2456
NC_009952.1	RefSeq	CDS	2600009	2604343	.	-	0	ID=cds2448;Name=YP_001533791.1;Parent=gene2491;Dbxref=Genbank:YP_001533791.1,GeneID:5714112;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533791.1;transl_table=11
NC_009952.1	RefSeq	gene	2604619	2607219	.	-	.	ID=gene2492;Name=Dshi_2457;Dbxref=GeneID:5714113;gbkey=Gene;locus_tag=Dshi_2457
NC_009952.1	RefSeq	CDS	2604619	2607219	.	-	0	ID=cds2449;Name=YP_001533792.1;Parent=gene2492;Dbxref=Genbank:YP_001533792.1,GeneID:5714113;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533792.1;transl_table=11
NC_009952.1	RefSeq	gene	2607235	2608275	.	-	.	ID=gene2493;Name=Dshi_2458;Dbxref=GeneID:5714114;gbkey=Gene;locus_tag=Dshi_2458
NC_009952.1	RefSeq	CDS	2607235	2608275	.	-	0	ID=cds2450;Name=YP_001533793.1;Parent=gene2493;Dbxref=Genbank:YP_001533793.1,GeneID:5714114;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533793.1;transl_table=11
NC_009952.1	RefSeq	gene	2608289	2612149	.	-	.	ID=gene2494;Name=Dshi_2459;Dbxref=GeneID:5714115;gbkey=Gene;locus_tag=Dshi_2459
NC_009952.1	RefSeq	CDS	2608289	2612149	.	-	0	ID=cds2451;Name=YP_001533794.1;Parent=gene2494;Note=KEGG: ppd:Ppro_0366 hypothetical protein;Dbxref=Genbank:YP_001533794.1,GeneID:5714115;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533794.1;transl_table=11
NC_009952.1	RefSeq	STS	2610131	2610729	.	+	.	ID=id47;Dbxref=UniSTS:474271;gbkey=STS
NC_009952.1	RefSeq	gene	2612167	2612616	.	-	.	ID=gene2495;Name=Dshi_2460;Dbxref=GeneID:5714116;gbkey=Gene;locus_tag=Dshi_2460
NC_009952.1	RefSeq	CDS	2612167	2612616	.	-	0	ID=cds2452;Name=YP_001533795.1;Parent=gene2495;Note=PFAM: GPW%2Fgp25 family protein KEGG: ppd:Ppro_0367 gpW%2FGP25 family protein COG3628: Phage baseplate assembly protein W%3B related to gene 25-like lysozyme;Dbxref=Genbank:YP_001533795.1,GeneID:5714116;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533795.1;transl_table=11
NC_009952.1	RefSeq	gene	2612621	2612920	.	-	.	ID=gene2496;Name=Dshi_2461;Dbxref=GeneID:5714117;gbkey=Gene;locus_tag=Dshi_2461
NC_009952.1	RefSeq	CDS	2612621	2612920	.	-	0	ID=cds2453;Name=YP_001533796.1;Parent=gene2496;Note=PFAM: PAAR repeat-containing protein KEGG: sdn:Sden_3002 PaaR COG4104: Uncharacterized conserved protein;Dbxref=Genbank:YP_001533796.1,GeneID:5714117;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533796.1;transl_table=11
NC_009952.1	RefSeq	gene	2612931	2614718	.	-	.	ID=gene2497;Name=Dshi_2462;Dbxref=GeneID:5714118;gbkey=Gene;locus_tag=Dshi_2462
NC_009952.1	RefSeq	CDS	2612931	2614718	.	-	0	ID=cds2454;Name=YP_001533797.1;Parent=gene2497;Note=PFAM: Rhs element Vgr protein KEGG: ppd:Ppro_0369 rhs element Vgr protein TIGR01646: Rhs element Vgr protein%3B related to phage late control gene D;Dbxref=Genbank:YP_001533797.1,GeneID:5714118;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533797.1;transl_table=11
NC_009952.1	RefSeq	gene	2614711	2615373	.	-	.	ID=gene2498;Name=Dshi_2463;Dbxref=GeneID:5714119;gbkey=Gene;locus_tag=Dshi_2463
NC_009952.1	RefSeq	CDS	2614711	2615373	.	-	0	ID=cds2455;Name=YP_001533798.1;Parent=gene2498;Dbxref=Genbank:YP_001533798.1,GeneID:5714119;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533798.1;transl_table=11
NC_009952.1	RefSeq	gene	2615591	2616073	.	-	.	ID=gene2499;Name=Dshi_2464;Dbxref=GeneID:5714120;gbkey=Gene;locus_tag=Dshi_2464
NC_009952.1	RefSeq	CDS	2615591	2616073	.	-	0	ID=cds2456;Name=YP_001533799.1;Parent=gene2499;Note=TIGRFAM: conserved hypothetical phage tail protein %28TIGR02241%29 PFAM: conserved hypothetical protein KEGG: rde:RD1_4219 hypothetical protein%3B phage tail region protein;Dbxref=Genbank:YP_001533799.1,GeneID:5714120;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533799.1;transl_table=11
NC_009952.1	RefSeq	gene	2616086	2616544	.	-	.	ID=gene2500;Name=Dshi_2465;Dbxref=GeneID:5714121;gbkey=Gene;locus_tag=Dshi_2465
NC_009952.1	RefSeq	CDS	2616086	2616544	.	-	0	ID=cds2457;Name=YP_001533800.1;Parent=gene2500;Note=TIGRFAM: conserved hypothetical phage tail protein %28TIGR02241%29 PFAM: conserved hypothetical protein KEGG: ppd:Ppro_0372 conserved hypothetical phage tail protein%3B phage tail region protein;Dbxref=Genbank:YP_001533800.1,GeneID:5714121;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533800.1;transl_table=11
NC_009952.1	RefSeq	gene	2616568	2618061	.	-	.	ID=gene2501;Name=Dshi_2466;Dbxref=GeneID:5714122;gbkey=Gene;locus_tag=Dshi_2466
NC_009952.1	RefSeq	CDS	2616568	2618061	.	-	0	ID=cds2458;Name=YP_001533801.1;Parent=gene2501;Note=PFAM:Phage tail sheath protein KEGG: sdn:Sden_3007 hypothetical protein%3B related to phage tail sheath protein;Dbxref=Genbank:YP_001533801.1,GeneID:5714122;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533801.1;transl_table=11
NC_009952.1	RefSeq	gene	2618145	2619143	.	-	.	ID=gene2502;Name=Dshi_2467;Dbxref=GeneID:5714123;gbkey=Gene;locus_tag=Dshi_2467
NC_009952.1	RefSeq	CDS	2618145	2619143	.	-	0	ID=cds2459;Name=YP_001533802.1;Parent=gene2502;Dbxref=Genbank:YP_001533802.1,GeneID:5714123;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533802.1;transl_table=11
NC_009952.1	RefSeq	gene	2619421	2620425	.	+	.	ID=gene2503;Name=Dshi_2468;Dbxref=GeneID:5714124;gbkey=Gene;locus_tag=Dshi_2468
NC_009952.1	RefSeq	CDS	2619421	2620425	.	+	0	ID=cds2460;Name=YP_001533803.1;Parent=gene2503;Dbxref=Genbank:YP_001533803.1,GeneID:5714124;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533803.1;transl_table=11
NC_009952.1	RefSeq	gene	2620435	2621520	.	-	.	ID=gene2504;Name=mraY;Dbxref=GeneID:5713365;gbkey=Gene;gene=mraY;locus_tag=Dshi_2469
NC_009952.1	RefSeq	CDS	2620435	2621520	.	-	0	ID=cds2461;Name=YP_001533804.1;Parent=gene2504;Note=First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan;Dbxref=Genbank:YP_001533804.1,GeneID:5713365;gbkey=CDS;gene=mraY;product=phospho-N-acetylmuramoyl-pentapeptide-transferase;protein_id=YP_001533804.1;transl_table=11
NC_009952.1	RefSeq	gene	2621533	2622972	.	-	.	ID=gene2505;Name=murF;Dbxref=GeneID:5713366;gbkey=Gene;gene=murF;locus_tag=Dshi_2470
NC_009952.1	RefSeq	CDS	2621533	2622972	.	-	0	ID=cds2462;Name=YP_001533805.1;Parent=gene2505;Note=Swiss-Prot: P11880- UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase murF TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2%2C 6-diaminopimelate--D-alanyl-D-alanyl ligase PFAM: cytoplasmic peptidoglycan synthetase domain protein%3B Mur ligase middle domain protein;Dbxref=Genbank:YP_001533805.1,GeneID:5713366;gbkey=CDS;gene=murF;product=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase;protein_id=YP_001533805.1;transl_table=11
NC_009952.1	RefSeq	gene	2622969	2624450	.	-	.	ID=gene2506;Name=murE;Dbxref=GeneID:5713367;gbkey=Gene;gene=murE;locus_tag=Dshi_2471
NC_009952.1	RefSeq	CDS	2622969	2624450	.	-	0	ID=cds2463;Name=YP_001533806.1;Parent=gene2506;Note=involved in cell wall formation%3B peptidoglycan synthesis%3B cytoplasmic enzyme%3B catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate;Dbxref=Genbank:YP_001533806.1,GeneID:5713367;gbkey=CDS;gene=murE;product=UDP-N-acetylmuramoylalanyl-D-glutamate--2%2C6-diaminopimelate ligase;protein_id=YP_001533806.1;transl_table=11
NC_009952.1	RefSeq	gene	2624468	2626261	.	-	.	ID=gene2507;Name=ftsI2;Dbxref=GeneID:5713368;gbkey=Gene;gene=ftsI2;locus_tag=Dshi_2472
NC_009952.1	RefSeq	CDS	2624468	2626261	.	-	0	ID=cds2464;Name=YP_001533807.1;Parent=gene2507;Note=Swiss-Prot: P0AD68-Peptidoglycan synthetase ftsI %5BPrecursor%5D PFAM: penicillin-binding protein transpeptidase%3B Penicillin-binding protein dimerisation domain COG0768: Cell division protein FtsI%2Fpenicillin-binding protein 2;Dbxref=Genbank:YP_001533807.1,GeneID:5713368;gbkey=CDS;gene=ftsI2;product=peptidoglycan synthetase ftsI;protein_id=YP_001533807.1;transl_table=11
NC_009952.1	RefSeq	gene	2626258	2626614	.	-	.	ID=gene2508;Name=ftsI2;Dbxref=GeneID:5713369;gbkey=Gene;gene=ftsI2;locus_tag=Dshi_2473
NC_009952.1	RefSeq	CDS	2626258	2626614	.	-	0	ID=cds2465;Name=YP_001533808.1;Parent=gene2508;Dbxref=Genbank:YP_001533808.1,GeneID:5713369;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533808.1;transl_table=11
NC_009952.1	RefSeq	gene	2626611	2627612	.	-	.	ID=gene2509;Name=mraW;Dbxref=GeneID:5713370;gbkey=Gene;gene=mraW;locus_tag=Dshi_2474
NC_009952.1	RefSeq	CDS	2626611	2627612	.	-	0	ID=cds2466;Name=YP_001533809.1;Parent=gene2509;Note=Swiss-Prot: P60390- S-adenosyl-L-methionine-dependent methyltransferase mraW TIGRFAM: S-adenosyl-methyltransferase MraW PFAM: methyltransferase KEGG: rsq:Rsph17025_0683 S-adenosyl-methyltransferase MraW;Dbxref=Genbank:YP_001533809.1,GeneID:5713370;gbkey=CDS;gene=mraW;product=S-adenosyl-methyltransferase MraW;protein_id=YP_001533809.1;transl_table=11
NC_009952.1	RefSeq	gene	2627617	2628129	.	-	.	ID=gene2510;Name=Dshi_2475;Dbxref=GeneID:5713371;gbkey=Gene;locus_tag=Dshi_2475
NC_009952.1	RefSeq	CDS	2627617	2628129	.	-	0	ID=cds2467;Name=YP_001533810.1;Parent=gene2510;Note=MraZ%3B UPF0040%3B crystal structure shows similarity to AbrB;Dbxref=Genbank:YP_001533810.1,GeneID:5713371;gbkey=CDS;product=cell division protein MraZ;protein_id=YP_001533810.1;transl_table=11
NC_009952.1	RefSeq	gene	2628776	2629864	.	-	.	ID=gene2511;Name=Dshi_2476;Dbxref=GeneID:5713372;gbkey=Gene;locus_tag=Dshi_2476
NC_009952.1	RefSeq	CDS	2628776	2629864	.	-	0	ID=cds2468;Name=YP_001533811.1;Parent=gene2511;Note=Swiss-Prot: P0AF08-Protein mrp COG0489: ATPases involved in chromosome partitioning%3B related to protein mrp;Dbxref=Genbank:YP_001533811.1,GeneID:5713372;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533811.1;transl_table=11
NC_009952.1	RefSeq	gene	2630248	2630712	.	-	.	ID=gene2512;Name=Dshi_2477;Dbxref=GeneID:5713373;gbkey=Gene;locus_tag=Dshi_2477
NC_009952.1	RefSeq	CDS	2630248	2630712	.	-	0	ID=cds2469;Name=YP_001533812.1;Parent=gene2512;Note=Swiss-Prot: P0ACJ0- Leucine-responsive regulatory protein PFAM: regulatory protein AsnC%2FLrp family KEGG: sil:SPO3612 transcriptional regulator%2C AsnC family;Dbxref=Genbank:YP_001533812.1,GeneID:5713373;gbkey=CDS;product=putative leucine-responsive regulatory protein;protein_id=YP_001533812.1;transl_table=11
NC_009952.1	RefSeq	gene	2630776	2631372	.	+	.	ID=gene2513;Name=Dshi_2478;Dbxref=GeneID:5713374;gbkey=Gene;locus_tag=Dshi_2478
NC_009952.1	RefSeq	CDS	2630776	2631372	.	+	0	ID=cds2470;Name=YP_001533813.1;Parent=gene2513;Note=Swiss-Prot: P38101-Inner membrane protein yfiK PFAM: Lysine exporter protein %28LYSE%2FYGGA%29 KEGG: sil:SPO3613 transporter%2C LysE family%3B similar to inner membrane protein yfiK;Dbxref=Genbank:YP_001533813.1,GeneID:5713374;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533813.1;transl_table=11
NC_009952.1	RefSeq	gene	2631379	2632347	.	-	.	ID=gene2514;Name=Dshi_2479;Dbxref=GeneID:5713375;gbkey=Gene;locus_tag=Dshi_2479
NC_009952.1	RefSeq	CDS	2631379	2632347	.	-	0	ID=cds2471;Name=YP_001533814.1;Parent=gene2514;Note=Swiss-Prot:P30864-Uncharacterized HTH-type transcriptional regulator yafC PFAM: regulatory protein LysR%3B LysR substrate-binding%3B LysR family;Dbxref=Genbank:YP_001533814.1,GeneID:5713375;gbkey=CDS;product=transcriptional regulator;protein_id=YP_001533814.1;transl_table=11
NC_009952.1	RefSeq	gene	2632408	2633268	.	+	.	ID=gene2515;Name=Dshi_2480;Dbxref=GeneID:5713376;gbkey=Gene;locus_tag=Dshi_2480
NC_009952.1	RefSeq	CDS	2632408	2633268	.	+	0	ID=cds2472;Name=YP_001533815.1;Parent=gene2515;Note=PFAM: short-chain dehydrogenase%2Freductase SDR COG1028: Dehydrogenases with different specificities %28related to short-chain alcohol dehydrogenases%29;Dbxref=Genbank:YP_001533815.1,GeneID:5713376;gbkey=CDS;product=short-chain dehydrogenase%2Freductase SDR;protein_id=YP_001533815.1;transl_table=11
NC_009952.1	RefSeq	gene	2633360	2633482	.	+	.	ID=gene2516;Name=Dshi_2481;Dbxref=GeneID:5713377;gbkey=Gene;locus_tag=Dshi_2481
NC_009952.1	RefSeq	CDS	2633360	2633482	.	+	0	ID=cds2473;Name=YP_001533816.1;Parent=gene2516;Dbxref=Genbank:YP_001533816.1,GeneID:5713377;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533816.1;transl_table=11
NC_009952.1	RefSeq	gene	2633707	2634015	.	+	.	ID=gene2517;Name=Dshi_2482;Dbxref=GeneID:5713378;gbkey=Gene;locus_tag=Dshi_2482
NC_009952.1	RefSeq	CDS	2633707	2634015	.	+	0	ID=cds2474;Name=YP_001533817.1;Parent=gene2517;Note=TIGRFAM %2F PFAM: Ethyl tert-butyl ether degradation EthD%3B similar to EthD protein;Dbxref=Genbank:YP_001533817.1,GeneID:5713378;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533817.1;transl_table=11
NC_009952.1	RefSeq	gene	2634052	2636475	.	-	.	ID=gene2518;Name=uvrD;Dbxref=GeneID:5713379;gbkey=Gene;gene=uvrD;locus_tag=Dshi_2483
NC_009952.1	RefSeq	CDS	2634052	2636475	.	-	0	ID=cds2475;Name=YP_001533818.1;Parent=gene2518;Note=Swiss-Prot: P03018-DNA helicase II PFAM: UvrD%2FREP helicase KEGG: jan:Jann_2777 UvrD%2FREP helicase;Dbxref=Genbank:YP_001533818.1,GeneID:5713379;gbkey=CDS;gene=uvrD;product=DNA helicase II;protein_id=YP_001533818.1;transl_table=11
NC_009952.1	RefSeq	gene	2636566	2637735	.	+	.	ID=gene2519;Name=lldD1;Dbxref=GeneID:5713380;gbkey=Gene;gene=lldD1;locus_tag=Dshi_2484
NC_009952.1	RefSeq	CDS	2636566	2637735	.	+	0	ID=cds2476;Name=YP_001533819.1;Parent=gene2519;Note=Swiss-Prot: P33232- L-lactate dehydrogenase %5Bcytochrome%5D lldD PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase KEGG: sit:TM1040_2026 L-lactate dehydrogenase %28cytochrome%29;Dbxref=Genbank:YP_001533819.1,GeneID:5713380;gbkey=CDS;gene=lldD1;product=cytochrome containing L-lactate dehydrogenase;protein_id=YP_001533819.1;transl_table=11
NC_009952.1	RefSeq	gene	2637777	2641214	.	+	.	ID=gene2520;Name=Dshi_2485;Dbxref=GeneID:5713381;gbkey=Gene;locus_tag=Dshi_2485
NC_009952.1	RefSeq	CDS	2637777	2641214	.	+	0	ID=cds2477;Name=YP_001533820.1;Parent=gene2520;Note=biotin-containing enzyme that catalyzes a two step carboxylation of pyruvate to oxaloacetate;Dbxref=Genbank:YP_001533820.1,GeneID:5713381;gbkey=CDS;product=pyruvate carboxylase;protein_id=YP_001533820.1;transl_table=11
NC_009952.1	RefSeq	gene	2641492	2642133	.	-	.	ID=gene2521;Name=Dshi_2486;Dbxref=GeneID:5713382;gbkey=Gene;locus_tag=Dshi_2486
NC_009952.1	RefSeq	CDS	2641492	2642133	.	-	0	ID=cds2478;Name=YP_001533821.1;Parent=gene2521;Note=PFAM: Protein of unknown function DUF1826 KEGG: rde:RD1_1857 hypothetical protein;Dbxref=Genbank:YP_001533821.1,GeneID:5713382;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533821.1;transl_table=11
NC_009952.1	RefSeq	gene	2642133	2643338	.	-	.	ID=gene2522;Name=Dshi_2487;Dbxref=GeneID:5713383;gbkey=Gene;locus_tag=Dshi_2487
NC_009952.1	RefSeq	CDS	2642133	2643338	.	-	0	ID=cds2479;Name=YP_001533822.1;Parent=gene2522;Note=Swiss-Prot: P31521- 47 kDa protein%3B PFAM: cobalamin synthesis protein P47K%3B cobalamin synthesis CobW domain protein;Dbxref=Genbank:YP_001533822.1,GeneID:5713383;gbkey=CDS;product=putative 47 kDa protein;protein_id=YP_001533822.1;transl_table=11
NC_009952.1	RefSeq	gene	2643515	2643589	.	+	.	ID=gene2523;Name=Dshi_6044;Dbxref=GeneID:5713384;gbkey=Gene;locus_tag=Dshi_6044
NC_009952.1	RefSeq	tRNA	2643515	2643589	.	+	.	ID=rna43;Parent=gene2523;Dbxref=GeneID:5713384;codons=61;gbkey=tRNA;product=tRNA-Gly
NC_009952.1	RefSeq	exon	2643515	2643589	.	+	.	ID=id48;Parent=rna43;Dbxref=GeneID:5713384;codons=61;gbkey=tRNA;product=tRNA-Gly
NC_009952.1	RefSeq	gene	2643636	2645039	.	-	.	ID=gene2524;Name=Dshi_2488;Dbxref=GeneID:5713385;gbkey=Gene;locus_tag=Dshi_2488
NC_009952.1	RefSeq	CDS	2643636	2645039	.	-	0	ID=cds2480;Name=YP_001533823.1;Parent=gene2524;Note=PFAM: helix-turn-helix domain protein%3B protein of unknown function DUF955 KEGG: rde:RD1_2203 transcriptional regulator%2C putative%3B associated with regulation of transcription;Dbxref=Genbank:YP_001533823.1,GeneID:5713385;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533823.1;transl_table=11
NC_009952.1	RefSeq	gene	2645177	2646379	.	+	.	ID=gene2525;Name=Dshi_2489;Dbxref=GeneID:5713386;gbkey=Gene;locus_tag=Dshi_2489
NC_009952.1	RefSeq	CDS	2645177	2646379	.	+	0	ID=cds2481;Name=YP_001533824.1;Parent=gene2525;Note=Swiss-Prot: O08374- Serine--glyoxylate aminotransferase %28Inferred from homology%29 PFAM: aminotransferase class V KEGG: sme:SMa2139 probable SgaA serine-glyoxylate aminotransferase %28SgaT%29;Dbxref=Genbank:YP_001533824.1,GeneID:5713386;gbkey=CDS;product=putative serine--glyoxylate aminotransferase;protein_id=YP_001533824.1;transl_table=11
NC_009952.1	RefSeq	gene	2646434	2647366	.	+	.	ID=gene2526;Name=citE1;Dbxref=GeneID:5713387;gbkey=Gene;gene=citE1;locus_tag=Dshi_2490
NC_009952.1	RefSeq	CDS	2646434	2647366	.	+	0	ID=cds2482;Name=YP_001533825.1;Parent=gene2526;Note=Swiss-Prot: P0A9I1-Citrate lyase subunit beta PIRSF015582: citrate lyase%2C beta subunit %5BValidated%5D%3B subunit beta;Dbxref=Genbank:YP_001533825.1,GeneID:5713387;gbkey=CDS;gene=citE1;product=citrate lyase;protein_id=YP_001533825.1;transl_table=11
NC_009952.1	RefSeq	gene	2647390	2648568	.	+	.	ID=gene2527;Name=sucC2;Dbxref=GeneID:5713388;gbkey=Gene;gene=sucC2;locus_tag=Dshi_2491
NC_009952.1	RefSeq	CDS	2647390	2648568	.	+	0	ID=cds2483;Name=YP_001533826.1;Parent=gene2527;Note=catalyzes the formation of malyl-CoA from malate and CoA;Dbxref=Genbank:YP_001533826.1,GeneID:5713388;gbkey=CDS;gene=sucC2;product=malate--CoA ligase subunit beta;protein_id=YP_001533826.1;transl_table=11
NC_009952.1	RefSeq	gene	2648581	2649480	.	+	.	ID=gene2528;Name=sucD2;Dbxref=GeneID:5713389;gbkey=Gene;gene=sucD2;locus_tag=Dshi_2492
NC_009952.1	RefSeq	CDS	2648581	2649480	.	+	0	ID=cds2484;Name=YP_001533827.1;Parent=gene2528;Note=Catalyzes the only substrate-level phosphorylation in the TCA cycle;Dbxref=Genbank:YP_001533827.1,GeneID:5713389;gbkey=CDS;gene=sucD2;product=succinyl-CoA synthetase subunit alpha;protein_id=YP_001533827.1;transl_table=11
NC_009952.1	RefSeq	gene	2649470	2650336	.	+	.	ID=gene2529;Name=sucD2;Dbxref=GeneID:5713390;gbkey=Gene;gene=sucD2;locus_tag=Dshi_2493
NC_009952.1	RefSeq	CDS	2649470	2650336	.	+	0	ID=cds2485;Name=YP_001533828.1;Parent=gene2529;Note=KEGG: pde:Pden_4111 hypothetical protein;Dbxref=Genbank:YP_001533828.1,GeneID:5713390;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533828.1;transl_table=11
NC_009952.1	RefSeq	gene	2650338	2651579	.	+	.	ID=gene2530;Name=Dshi_2494;Dbxref=GeneID:5713391;gbkey=Gene;locus_tag=Dshi_2494
NC_009952.1	RefSeq	CDS	2650338	2651579	.	+	0	ID=cds2486;Name=YP_001533829.1;Parent=gene2530;Note=IPR003673: CoA-transferase family III KEGG: rrs:RoseRS_4174 acyl-CoA transferase%2Fcarnitine dehydratase-like protei;Dbxref=Genbank:YP_001533829.1,GeneID:5713391;gbkey=CDS;product=CoA-transferase;protein_id=YP_001533829.1;transl_table=11
NC_009952.1	RefSeq	gene	2651711	2652277	.	-	.	ID=gene2531;Name=Dshi_2495;Dbxref=GeneID:5713392;gbkey=Gene;locus_tag=Dshi_2495
NC_009952.1	RefSeq	CDS	2651711	2652277	.	-	0	ID=cds2487;Name=YP_001533830.1;Parent=gene2531;Note=Swiss-Prot: P75925-Cytochrome b561 homolog 2 PFAM: cytochrome B561;Dbxref=Genbank:YP_001533830.1,GeneID:5713392;gbkey=CDS;product=putative cytochrome B561;protein_id=YP_001533830.1;transl_table=11
NC_009952.1	RefSeq	gene	2652382	2652942	.	-	.	ID=gene2532;Name=Dshi_2496;Dbxref=GeneID:5713393;gbkey=Gene;locus_tag=Dshi_2496
NC_009952.1	RefSeq	CDS	2652382	2652942	.	-	0	ID=cds2488;Name=YP_001533831.1;Parent=gene2532;Note=PFAM: EF hand IPR002048: Calcium-binding EF-hand KEGG: rsh:Rsph17029_2073 putative signal transduction protein with EFhand domain%3B associated with signal transduction;Dbxref=Genbank:YP_001533831.1,GeneID:5713393;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533831.1;transl_table=11
NC_009952.1	RefSeq	gene	2653184	2653903	.	+	.	ID=gene2533;Name=Dshi_2497;Dbxref=GeneID:5713394;gbkey=Gene;locus_tag=Dshi_2497
NC_009952.1	RefSeq	CDS	2653184	2653903	.	+	0	ID=cds2489;Name=YP_001533832.1;Parent=gene2533;Note=Swiss-Prot: P0AA16-Transcriptional regulatory protein %28ompR%29 PFAM: response regulator receiver%3B transcriptional regulator domain protein KEGG: rpe:RPE_4561 two component transcriptional regulator%2C winged helix family%3B colocated with histidin kinase%3B winged helix family;Dbxref=Genbank:YP_001533832.1,GeneID:5713394;gbkey=CDS;product=two component transcriptional regulator;protein_id=YP_001533832.1;transl_table=11
NC_009952.1	RefSeq	gene	2653900	2655261	.	+	.	ID=gene2534;Name=Dshi_2498;Dbxref=GeneID:5713395;gbkey=Gene;locus_tag=Dshi_2498
NC_009952.1	RefSeq	CDS	2653900	2655261	.	+	0	ID=cds2490;Name=YP_001533833.1;Parent=gene2534;Note=Swiss-Prot: P0AEJ4-Osmolarity sensor protein %28envZ%29 PFAM: ATP-binding region ATPase domain protein%3B histidine kinase HAMP region domain protein%3B histidine kinase A domain protein KEGG: sil:SPOA0358 sensor histidine kinase%3B colocated with response regulator;Dbxref=Genbank:YP_001533833.1,GeneID:5713395;gbkey=CDS;product=integral membrane sensor signal transduction histidine kinase;protein_id=YP_001533833.1;transl_table=11
NC_009952.1	RefSeq	gene	2655477	2656199	.	-	.	ID=gene2535;Name=Dshi_2499;Dbxref=GeneID:5713396;gbkey=Gene;locus_tag=Dshi_2499
NC_009952.1	RefSeq	CDS	2655477	2656199	.	-	0	ID=cds2491;Name=YP_001533834.1;Parent=gene2535;Note=Swiss-Prot: P0A0V3-Outer membrane protein class 4 %5BPrecursor%5D PFAM: OmpA%2FMotB domain protein KEGG: rde:RD1_1126 OmpA family domain protein COG2885: Outer membrane protein and related peptidoglycan-associated %28lipo%29proteins%3B related to outer membrane protein %28ompA%29;Dbxref=Genbank:YP_001533834.1,GeneID:5713396;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533834.1;transl_table=11
NC_009952.1	RefSeq	gene	2657746	2659947	.	+	.	ID=gene2536;Name=Dshi_2501;Dbxref=GeneID:5713398;gbkey=Gene;locus_tag=Dshi_2501
NC_009952.1	RefSeq	CDS	2657746	2659947	.	+	0	ID=cds2492;Name=YP_001533835.1;Parent=gene2536;Note=Swiss-Prot: P18770-Cyclolysin secretion%2Fprocessing ATP-binding protein cyaB%3B P26760-Toxin RTX-I translocation ATP-binding protein PFAM: ABC transporter transmembrane region%3B ABC transporter related SMART: AAA ATPase KEGG: rde:RD1_1124 toxin secretion ABC transporter%2C ATP-binding component%2C putative%3B colocated with secretion protein %28HylD family%29%3B associated with toxin excretion;Dbxref=Genbank:YP_001533835.1,GeneID:5713398;gbkey=CDS;product=ABC transporter;protein_id=YP_001533835.1;transl_table=11
NC_009952.1	RefSeq	gene	2659944	2661263	.	+	.	ID=gene2537;Name=Dshi_2502;Dbxref=GeneID:5713399;gbkey=Gene;locus_tag=Dshi_2502
NC_009952.1	RefSeq	CDS	2659944	2661263	.	+	0	ID=cds2493;Name=YP_001533836.1;Parent=gene2537;Note=Swiss-Prot: Q03025-Alkaline protease secretion protein aprE TIGRFAM: type I secretion membrane fusion protein%2C HlyD family PFAM: secretion protein HlyD family protein KEGG: rde:RD1_1123 HlyD family secretion protein%2C putative%3B colocated with ABC transporter%3B HlyD family;Dbxref=Genbank:YP_001533836.1,GeneID:5713399;gbkey=CDS;product=secretion protein;protein_id=YP_001533836.1;transl_table=11
NC_009952.1	RefSeq	gene	2661268	2668737	.	-	.	ID=gene2538;Name=Dshi_2503;Dbxref=GeneID:5713400;gbkey=Gene;locus_tag=Dshi_2503
NC_009952.1	RefSeq	CDS	2661268	2668737	.	-	0	ID=cds2494;Name=YP_001533837.1;Parent=gene2538;Dbxref=Genbank:YP_001533837.1,GeneID:5713400;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533837.1;transl_table=11
NC_009952.1	RefSeq	gene	2668891	2670234	.	+	.	ID=gene2539;Name=Dshi_2504;Dbxref=GeneID:5713401;gbkey=Gene;locus_tag=Dshi_2504
NC_009952.1	RefSeq	CDS	2668891	2670234	.	+	0	ID=cds2495;Name=YP_001533838.1;Parent=gene2539;Note=KEGG: jan:Jann_0233 hypothetical protein;Dbxref=Genbank:YP_001533838.1,GeneID:5713401;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533838.1;transl_table=11
NC_009952.1	RefSeq	gene	2670313	2670798	.	-	.	ID=gene2540;Name=Dshi_2505;Dbxref=GeneID:5713402;gbkey=Gene;locus_tag=Dshi_2505
NC_009952.1	RefSeq	CDS	2670313	2670798	.	-	0	ID=cds2496;Name=YP_001533839.1;Parent=gene2540;Dbxref=Genbank:YP_001533839.1,GeneID:5713402;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533839.1;transl_table=11
NC_009952.1	RefSeq	gene	2670795	2671211	.	-	.	ID=gene2541;Name=Dshi_2506;Dbxref=GeneID:5713403;gbkey=Gene;locus_tag=Dshi_2506
NC_009952.1	RefSeq	CDS	2670795	2671211	.	-	0	ID=cds2497;Name=YP_001533840.1;Parent=gene2541;Dbxref=Genbank:YP_001533840.1,GeneID:5713403;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533840.1;transl_table=11
NC_009952.1	RefSeq	gene	2672204	2672470	.	+	.	ID=gene2542;Name=Dshi_2507;Dbxref=GeneID:5713404;gbkey=Gene;locus_tag=Dshi_2507
NC_009952.1	RefSeq	CDS	2672204	2672470	.	+	0	ID=cds2498;Name=YP_001533841.1;Parent=gene2542;Note=Swiss-Prot: P17985-Insertion element ISR1 uncharacterized 10 kDa protein A3 IPR002514: Transposase IS3%2FIS911 PFAM: transposase IS3%2FIS911 family protein KEGG: rde:RD1_3450 inverted repeat region;Dbxref=Genbank:YP_001533841.1,GeneID:5713404;gbkey=CDS;product=transposase;protein_id=YP_001533841.1;transl_table=11
NC_009952.1	RefSeq	gene	2672494	2673315	.	+	.	ID=gene2543;Name=Dshi_2508;Dbxref=GeneID:5713405;gbkey=Gene;locus_tag=Dshi_2508
NC_009952.1	RefSeq	CDS	2672494	2673315	.	+	0	ID=cds2499;Name=YP_001533842.1;Parent=gene2543;Note=Swiss-Prot: P25438-Insertion element IS476 uncharacterized 39.2 kDa protein PFAM: Integrase catalytic region KEGG: rde:RD1_3449 integrase%2C catalytic domain%2C putativ%3B catalytic region;Dbxref=Genbank:YP_001533842.1,GeneID:5713405;gbkey=CDS;product=integrase;protein_id=YP_001533842.1;transl_table=11
NC_009952.1	RefSeq	gene	2673339	2674034	.	-	.	ID=gene2544;Name=Dshi_2509;Dbxref=GeneID:5713406;gbkey=Gene;locus_tag=Dshi_2509
NC_009952.1	RefSeq	CDS	2673339	2674034	.	-	0	ID=cds2500;Name=YP_001533843.1;Parent=gene2544;Note=Swiss-Prot: P25438-Insertion element IS476 uncharacterized 39.2 kDa protein PFAM: Integrase catalytic region KEGG: bbt:BBta_7691 integrase%2C catalytic domain%3B catalytic region;Dbxref=Genbank:YP_001533843.1,GeneID:5713406;gbkey=CDS;product=integrase;protein_id=YP_001533843.1;transl_table=11
NC_009952.1	RefSeq	gene	2674058	2674324	.	-	.	ID=gene2545;Name=Dshi_2510;Dbxref=GeneID:5713407;gbkey=Gene;locus_tag=Dshi_2510
NC_009952.1	RefSeq	CDS	2674058	2674324	.	-	0	ID=cds2501;Name=YP_001533844.1;Parent=gene2545;Note=Swiss-Prot: P17985-Insertion element ISR1 uncharacterized 10 kDa protein A3 PFAM: transposase IS3%2FIS911 family protein KEGG: mag:amb0646 insertion element ISR1 hypothetical 10 kDa protein A3;Dbxref=Genbank:YP_001533844.1,GeneID:5713407;gbkey=CDS;product=transposase;protein_id=YP_001533844.1;transl_table=11
NC_009952.1	RefSeq	gene	2675127	2675798	.	-	.	ID=gene2546;Name=Dshi_2511;Dbxref=GeneID:5713408;gbkey=Gene;locus_tag=Dshi_2511
NC_009952.1	RefSeq	CDS	2675127	2675798	.	-	0	ID=cds2502;Name=YP_001533845.1;Parent=gene2546;Dbxref=Genbank:YP_001533845.1,GeneID:5713408;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533845.1;transl_table=11
NC_009952.1	RefSeq	gene	2676018	2677034	.	+	.	ID=gene2547;Name=dusA;Dbxref=GeneID:5713409;gbkey=Gene;gene=dusA;locus_tag=Dshi_2512
NC_009952.1	RefSeq	CDS	2676018	2677034	.	+	0	ID=cds2503;Name=YP_001533846.1;Parent=gene2547;Note=Swiss-Prot: Q87L85- tRNA-dihydrouridine synthase A PIRSF006621-tRNA-dihydrouridine synthase TIGRFAM: TIM-barrel protein%2C yjbN family PFAM: dihydrouridine synthase DuS;Dbxref=Genbank:YP_001533846.1,GeneID:5713409;gbkey=CDS;gene=dusA;product=tRNA-dihydrouridine synthase A;protein_id=YP_001533846.1;transl_table=11
NC_009952.1	RefSeq	gene	2677050	2677463	.	-	.	ID=gene2548;Name=Dshi_2513;Dbxref=GeneID:5713410;gbkey=Gene;locus_tag=Dshi_2513
NC_009952.1	RefSeq	CDS	2677050	2677463	.	-	0	ID=cds2504;Name=YP_001533847.1;Parent=gene2548;Note=KEGG: sil:SPO1770 hypothetical protein;Dbxref=Genbank:YP_001533847.1,GeneID:5713410;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533847.1;transl_table=11
NC_009952.1	RefSeq	gene	2677548	2678540	.	+	.	ID=gene2549;Name=Dshi_2514;Dbxref=GeneID:5713411;gbkey=Gene;locus_tag=Dshi_2514
NC_009952.1	RefSeq	CDS	2677548	2678540	.	+	0	ID=cds2505;Name=YP_001533848.1;Parent=gene2549;Note=KEGG: sil:SPO1769 hypothetical protein;Dbxref=Genbank:YP_001533848.1,GeneID:5713411;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533848.1;transl_table=11
NC_009952.1	RefSeq	gene	2678672	2680408	.	-	.	ID=gene2550;Name=Dshi_2515;Dbxref=GeneID:5713412;gbkey=Gene;locus_tag=Dshi_2515
NC_009952.1	RefSeq	CDS	2678672	2680408	.	-	0	ID=cds2506;Name=YP_001533849.1;Parent=gene2550;Note=Swiss-Prot: P0AFR2-Putative sulfate transporter ychM TIGRFAM: sulfate transporter PFAM: Sulfate transporter%2Fantisigma-factor antagonist STAS%3B sulphate transporter KEGG: sit:TM1040_3648 sulfate permease;Dbxref=Genbank:YP_001533849.1,GeneID:5713412;gbkey=CDS;product=putative sulfate transporter;protein_id=YP_001533849.1;transl_table=11
NC_009952.1	RefSeq	gene	2680474	2680680	.	+	.	ID=gene2551;Name=Dshi_2516;Dbxref=GeneID:5713413;gbkey=Gene;locus_tag=Dshi_2516
NC_009952.1	RefSeq	CDS	2680474	2680680	.	+	0	ID=cds2507;Name=YP_001533850.1;Parent=gene2551;Dbxref=Genbank:YP_001533850.1,GeneID:5713413;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533850.1;transl_table=11
NC_009952.1	RefSeq	gene	2680792	2681676	.	-	.	ID=gene2552;Name=Dshi_2517;Dbxref=GeneID:5713414;gbkey=Gene;locus_tag=Dshi_2517
NC_009952.1	RefSeq	CDS	2680792	2681676	.	-	0	ID=cds2508;Name=YP_001533851.1;Parent=gene2552;Note=Swiss-Prot: Q8UAA9-Beta-lactamase hydrolase-like protein PFAM: beta-lactamase domain protein KEGG: rde:RD1_0785 metallo-beta-lactamase family protein%3B related to beta-lactamase hydrolase-like protein;Dbxref=Genbank:YP_001533851.1,GeneID:5713414;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533851.1;transl_table=11
NC_009952.1	RefSeq	gene	2681705	2682142	.	-	.	ID=gene2553;Name=Dshi_2518;Dbxref=GeneID:5713415;gbkey=Gene;locus_tag=Dshi_2518
NC_009952.1	RefSeq	CDS	2681705	2682142	.	-	0	ID=cds2509;Name=YP_001533852.1;Parent=gene2553;Note=Swiss-Prot: Q87AD3-UPF0394 membrane protein PD_1893 PFAM: protein of unknown function DUF395 YeeE%2FYedE KEGG: sit:TM1040_3646 protein of unknown function DUF395%2C YeeE%2FYedE;Dbxref=Genbank:YP_001533852.1,GeneID:5713415;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533852.1;transl_table=11
NC_009952.1	RefSeq	gene	2682147	2682581	.	-	.	ID=gene2554;Name=Dshi_2519;Dbxref=GeneID:5713416;gbkey=Gene;locus_tag=Dshi_2519
NC_009952.1	RefSeq	CDS	2682147	2682581	.	-	0	ID=cds2510;Name=YP_001533853.1;Parent=gene2554;Note=PFAM: protein of unknown function DUF395 YeeE%2FYedE KEGG: jan:Jann_2818 protein of unknown function DUF395%2C YeeE%2FYedE;Dbxref=Genbank:YP_001533853.1,GeneID:5713416;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533853.1;transl_table=11
NC_009952.1	RefSeq	gene	2682578	2682790	.	-	.	ID=gene2555;Name=Dshi_2520;Dbxref=GeneID:5713417;gbkey=Gene;locus_tag=Dshi_2520
NC_009952.1	RefSeq	CDS	2682578	2682790	.	-	0	ID=cds2511;Name=YP_001533854.1;Parent=gene2555;Note=KEGG: rde:RD1_0788 hypothetical protein;Dbxref=Genbank:YP_001533854.1,GeneID:5713417;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533854.1;transl_table=11
NC_009952.1	RefSeq	gene	2682892	2683569	.	-	.	ID=gene2556;Name=Dshi_2521;Dbxref=GeneID:5713418;gbkey=Gene;locus_tag=Dshi_2521
NC_009952.1	RefSeq	CDS	2682892	2683569	.	-	0	ID=cds2512;Name=YP_001533855.1;Parent=gene2556;Note=Swiss-Prot: P0ACJ8-Catabolite gene activator crp PFAM: cyclic nucleotide-binding SMART: regulatory protein Crp KEGG: sil:SPO1615 cyclic nucleotide-binding protein%3B Crp%2FFnr family;Dbxref=Genbank:YP_001533855.1,GeneID:5713418;gbkey=CDS;product=transcriptional regulator;protein_id=YP_001533855.1;transl_table=11
NC_009952.1	RefSeq	gene	2683654	2684346	.	-	.	ID=gene2557;Name=Dshi_2522;Dbxref=GeneID:5713419;gbkey=Gene;locus_tag=Dshi_2522
NC_009952.1	RefSeq	CDS	2683654	2684346	.	-	0	ID=cds2513;Name=YP_001533856.1;Parent=gene2557;Note=Swiss-Prot: Q8PYP6-Probable peroxiredoxin PFAM: alkyl hydroperoxide reductase%2F Thiol specific antioxidant%2F Mal allergen%3B Redoxin domain protein;Dbxref=Genbank:YP_001533856.1,GeneID:5713419;gbkey=CDS;product=putative peroxiredoxin;protein_id=YP_001533856.1;transl_table=11
NC_009952.1	RefSeq	gene	2684418	2685335	.	+	.	ID=gene2558;Name=Dshi_2523;Dbxref=GeneID:5713420;gbkey=Gene;locus_tag=Dshi_2523
NC_009952.1	RefSeq	CDS	2684418	2685335	.	+	0	ID=cds2514;Name=YP_001533857.1;Parent=gene2558;Note=Swiss-Prot: P0ACQ4-Hydrogen peroxide-inducible genes activator oxyR PFAM: regulatory protein LysR%3B LysR substrate-binding KEGG: rpb:RPB_4602 transcriptional regulator%2C LysR family;Dbxref=Genbank:YP_001533857.1,GeneID:5713420;gbkey=CDS;product=putative hydrogen peroxide-inducible genes activator;protein_id=YP_001533857.1;transl_table=11
NC_009952.1	RefSeq	gene	2685358	2686335	.	-	.	ID=gene2559;Name=Dshi_2524;Dbxref=GeneID:5713421;gbkey=Gene;locus_tag=Dshi_2524
NC_009952.1	RefSeq	CDS	2685358	2686335	.	-	0	ID=cds2515;Name=YP_001533858.1;Parent=gene2559;Note=TIGR00816: C4-dicarboxylate transporter%2Fmalic acid transport protein PFAM: C4-dicarboxylate transporter%2Fmalic acid transport protein KEGG: jan:Jann_2959 C4-dicarboxylate transporter%2Fmalic acid transport protein Swiss-Prot: P25396-Tellurite resistance protein tehA;Dbxref=Genbank:YP_001533858.1,GeneID:5713421;gbkey=CDS;product=putative C4-dicarboxylate transporter %2F malic acid transport protein;protein_id=YP_001533858.1;transl_table=11
NC_009952.1	RefSeq	gene	2686607	2686975	.	-	.	ID=gene2560;Name=Dshi_2525;Dbxref=GeneID:5713422;gbkey=Gene;locus_tag=Dshi_2525
NC_009952.1	RefSeq	CDS	2686607	2686975	.	-	0	ID=cds2516;Name=YP_001533859.1;Parent=gene2560;Note=KEGG: sil:SPO1613 hypothetical protein;Dbxref=Genbank:YP_001533859.1,GeneID:5713422;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533859.1;transl_table=11
NC_009952.1	RefSeq	gene	2686988	2688289	.	-	.	ID=gene2561;Name=Dshi_2526;Dbxref=GeneID:5713423;gbkey=Gene;locus_tag=Dshi_2526
NC_009952.1	RefSeq	CDS	2686988	2688289	.	-	0	ID=cds2517;Name=YP_001533860.1;Parent=gene2561;Note=PTHR10632: Sulfide quinone-reductase PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase;Dbxref=Genbank:YP_001533860.1,GeneID:5713423;gbkey=CDS;product=putative sulfide quinone-rductase;protein_id=YP_001533860.1;transl_table=11
NC_009952.1	RefSeq	gene	2688731	2689123	.	-	.	ID=gene2562;Name=Dshi_2527;Dbxref=GeneID:5713424;gbkey=Gene;locus_tag=Dshi_2527
NC_009952.1	RefSeq	CDS	2688731	2689123	.	-	0	ID=cds2518;Name=YP_001533861.1;Parent=gene2562;Dbxref=Genbank:YP_001533861.1,GeneID:5713424;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533861.1;transl_table=11
NC_009952.1	RefSeq	gene	2689216	2689971	.	-	.	ID=gene2563;Name=Dshi_2528;Dbxref=GeneID:5713425;gbkey=Gene;locus_tag=Dshi_2528
NC_009952.1	RefSeq	CDS	2689216	2689971	.	-	0	ID=cds2519;Name=YP_001533862.1;Parent=gene2563;Note=PFAM: Bacterial regulatory proteins%2C crp family KEGG: rru:Rru_A1245 transcriptional regulator%2C Crp%2FFnr family%3B Crp%2FFnr family;Dbxref=Genbank:YP_001533862.1,GeneID:5713425;gbkey=CDS;product=putative transcriptional regulator;protein_id=YP_001533862.1;transl_table=11
NC_009952.1	RefSeq	gene	2689949	2691163	.	-	.	ID=gene2564;Name=Dshi_2529;Dbxref=GeneID:5713426;gbkey=Gene;locus_tag=Dshi_2529
NC_009952.1	RefSeq	CDS	2689949	2691163	.	-	0	ID=cds2520;Name=YP_001533863.1;Parent=gene2564;Note=KEGG: sil:SPO1611 hypothetical protein;Dbxref=Genbank:YP_001533863.1,GeneID:5713426;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533863.1;transl_table=11
NC_009952.1	RefSeq	gene	2691359	2691556	.	-	.	ID=gene2565;Name=Dshi_2530;Dbxref=GeneID:5713427;gbkey=Gene;locus_tag=Dshi_2530
NC_009952.1	RefSeq	CDS	2691359	2691556	.	-	0	ID=cds2521;Name=YP_001533864.1;Parent=gene2565;Dbxref=Genbank:YP_001533864.1,GeneID:5713427;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533864.1;transl_table=11
NC_009952.1	RefSeq	gene	2691653	2691925	.	-	.	ID=gene2566;Name=Dshi_2531;Dbxref=GeneID:5713428;gbkey=Gene;locus_tag=Dshi_2531
NC_009952.1	RefSeq	CDS	2691653	2691925	.	-	0	ID=cds2522;Name=YP_001533865.1;Parent=gene2566;Dbxref=Genbank:YP_001533865.1,GeneID:5713428;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533865.1;transl_table=11
NC_009952.1	RefSeq	gene	2692195	2692497	.	-	.	ID=gene2567;Name=Dshi_2532;Dbxref=GeneID:5713429;gbkey=Gene;locus_tag=Dshi_2532
NC_009952.1	RefSeq	CDS	2692195	2692497	.	-	0	ID=cds2523;Name=YP_001533866.1;Parent=gene2567;Dbxref=Genbank:YP_001533866.1,GeneID:5713429;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533866.1;transl_table=11
NC_009952.1	RefSeq	gene	2692835	2693023	.	-	.	ID=gene2568;Name=Dshi_2533;Dbxref=GeneID:5713430;gbkey=Gene;locus_tag=Dshi_2533
NC_009952.1	RefSeq	CDS	2692835	2693023	.	-	0	ID=cds2524;Name=YP_001533867.1;Parent=gene2568;Dbxref=Genbank:YP_001533867.1,GeneID:5713430;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533867.1;transl_table=11
NC_009952.1	RefSeq	gene	2693038	2693469	.	-	.	ID=gene2569;Name=Dshi_2534;Dbxref=GeneID:5713431;gbkey=Gene;locus_tag=Dshi_2534
NC_009952.1	RefSeq	CDS	2693038	2693469	.	-	0	ID=cds2525;Name=YP_001533868.1;Parent=gene2569;Note=PFAM: Integral membrane protein DUF112 COG3333: Uncharacterized protein conserved in bacteria;Dbxref=Genbank:YP_001533868.1,GeneID:5713431;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533868.1;transl_table=11
NC_009952.1	RefSeq	gene	2693658	2693837	.	-	.	ID=gene2570;Name=Dshi_2535;Dbxref=GeneID:5713432;gbkey=Gene;locus_tag=Dshi_2535
NC_009952.1	RefSeq	CDS	2693658	2693837	.	-	0	ID=cds2526;Name=YP_001533869.1;Parent=gene2570;Dbxref=Genbank:YP_001533869.1,GeneID:5713432;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533869.1;transl_table=11
NC_009952.1	RefSeq	gene	2693913	2694260	.	-	.	ID=gene2571;Name=Dshi_2536;Dbxref=GeneID:5713433;gbkey=Gene;locus_tag=Dshi_2536
NC_009952.1	RefSeq	CDS	2693913	2694260	.	-	0	ID=cds2527;Name=YP_001533870.1;Parent=gene2571;Dbxref=Genbank:YP_001533870.1,GeneID:5713433;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533870.1;transl_table=11
NC_009952.1	RefSeq	gene	2694263	2695291	.	-	.	ID=gene2572;Name=Dshi_2537;Dbxref=GeneID:5713434;gbkey=Gene;locus_tag=Dshi_2537
NC_009952.1	RefSeq	CDS	2694263	2695291	.	-	0	ID=cds2528;Name=YP_001533871.1;Parent=gene2572;Note=Swiss-Prot: Q59727- 4%2C5-dihydroxyphthalate decarboxylase %5Bpredicted%5D;Dbxref=Genbank:YP_001533871.1,GeneID:5713434;gbkey=CDS;product=putative 4%2C5-dihydroxyphthalate decarboxylase;protein_id=YP_001533871.1;transl_table=11
NC_009952.1	RefSeq	gene	2695338	2696024	.	-	.	ID=gene2573;Name=Dshi_2538;Dbxref=GeneID:5713435;gbkey=Gene;locus_tag=Dshi_2538
NC_009952.1	RefSeq	CDS	2695338	2696024	.	-	0	ID=cds2529;Name=YP_001533872.1;Parent=gene2573;Note=Swiss-Prot: P76004-Uncharacterized protein ycgM PFAM: fumarylacetoacetate %28FAA%29 hydrolase KEGG: rsh:Rsph17029_0213 fumarylacetoacetate %28FAA%29 hydrolase%3B related to  fumarylacetoacetate %28FAA%29 hydrolase;Dbxref=Genbank:YP_001533872.1,GeneID:5713435;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533872.1;transl_table=11
NC_009952.1	RefSeq	gene	2696193	2696882	.	+	.	ID=gene2574;Name=Dshi_2539;Dbxref=GeneID:5713436;gbkey=Gene;locus_tag=Dshi_2539
NC_009952.1	RefSeq	CDS	2696193	2696882	.	+	0	ID=cds2530;Name=YP_001533873.1;Parent=gene2574;Note=Swiss-Prot: P39161-Uxu operon transcriptional regulator PFAM: regulatory protein GntR HTH%3B GntR domain protein KEGG: ent:Ent638_0750 GntR domain protein%3B gntR family;Dbxref=Genbank:YP_001533873.1,GeneID:5713436;gbkey=CDS;product=transcriptional regulator;protein_id=YP_001533873.1;transl_table=11
NC_009952.1	RefSeq	gene	2696948	2697499	.	+	.	ID=gene2575;Name=Dshi_2540;Dbxref=GeneID:5713437;gbkey=Gene;locus_tag=Dshi_2540
NC_009952.1	RefSeq	CDS	2696948	2697499	.	+	0	ID=cds2531;Name=YP_001533874.1;Parent=gene2575;Dbxref=Genbank:YP_001533874.1,GeneID:5713437;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533874.1;transl_table=11
NC_009952.1	RefSeq	gene	2697654	2698334	.	-	.	ID=gene2576;Name=Dshi_2541;Dbxref=GeneID:5713438;gbkey=Gene;locus_tag=Dshi_2541
NC_009952.1	RefSeq	CDS	2697654	2698334	.	-	0	ID=cds2532;Name=YP_001533875.1;Parent=gene2576;Note=Swiss-Prot: P0ACL7- Putative L-lactate dehydrogenase operon regulatory protein PFAM: regulatory protein GntR HTH%3B GntR domain protein KEGG: rle:RL4574 putative GntR family transcriptional regulator%3B gntR family;Dbxref=Genbank:YP_001533875.1,GeneID:5713438;gbkey=CDS;product=transcriptional regulator;protein_id=YP_001533875.1;transl_table=11
NC_009952.1	RefSeq	gene	2698518	2699444	.	+	.	ID=gene2577;Name=Dshi_2542;Dbxref=GeneID:5713439;gbkey=Gene;locus_tag=Dshi_2542
NC_009952.1	RefSeq	CDS	2698518	2699444	.	+	0	ID=cds2533;Name=YP_001533876.1;Parent=gene2577;Note=Swiss-Prot: P76004-Uncharacterized protein ycgM PFAM: fumarylacetoacetate %28FAA%29 hydrolase KEGG: bxe:Bxe_A3618 putative hydrolase%3B related to  fumarylacetoacetate %28FAA%29 hydrolase;Dbxref=Genbank:YP_001533876.1,GeneID:5713439;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533876.1;transl_table=11
NC_009952.1	RefSeq	gene	2699475	2700533	.	+	.	ID=gene2578;Name=Dshi_2543;Dbxref=GeneID:5713440;gbkey=Gene;locus_tag=Dshi_2543
NC_009952.1	RefSeq	CDS	2699475	2700533	.	+	0	ID=cds2534;Name=YP_001533877.1;Parent=gene2578;Note=Swiss-Prot: P40400-Putative aliphatic sulfonates-binding protein %5BPrecursor%5D PFAM: NMT1%2FTHI5 like domain protein;Dbxref=Genbank:YP_001533877.1,GeneID:5713440;gbkey=CDS;product=putative-binding protein;protein_id=YP_001533877.1;transl_table=11
NC_009952.1	RefSeq	gene	2700533	2701342	.	+	.	ID=gene2579;Name=Dshi_2544;Dbxref=GeneID:5713441;gbkey=Gene;locus_tag=Dshi_2544
NC_009952.1	RefSeq	CDS	2700533	2701342	.	+	0	ID=cds2535;Name=YP_001533878.1;Parent=gene2579;Note=Swiss-Prot: Q57855-Uncharacterized ABC transporter ATP-binding protein MJ0412 PFAM: ABC transporter related SMART: AAA ATPase KEGG: rsh:Rsph17029_3905 ABC transporter related%3B ATP-binding protein;Dbxref=Genbank:YP_001533878.1,GeneID:5713441;gbkey=CDS;product=ABC transporter;protein_id=YP_001533878.1;transl_table=11
NC_009952.1	RefSeq	gene	2701339	2702202	.	+	.	ID=gene2580;Name=Dshi_2545;Dbxref=GeneID:5713442;gbkey=Gene;locus_tag=Dshi_2545
NC_009952.1	RefSeq	CDS	2701339	2702202	.	+	0	ID=cds2536;Name=YP_001533879.1;Parent=gene2580;Note=Swiss-Prot: P40401-Putative aliphatic sulfonates transport permease protein PFAM: binding-protein-dependent transport systems inner membrane component%3B inner membrane component;Dbxref=Genbank:YP_001533879.1,GeneID:5713442;gbkey=CDS;product=binding-protein-dependent transport system protein;protein_id=YP_001533879.1;transl_table=11
NC_009952.1	RefSeq	gene	2702195	2703250	.	+	.	ID=gene2581;Name=Dshi_2546;Dbxref=GeneID:5713443;gbkey=Gene;locus_tag=Dshi_2546
NC_009952.1	RefSeq	CDS	2702195	2703250	.	+	0	ID=cds2537;Name=YP_001533880.1;Parent=gene2581;Note=Swiss-Prot: O34736-Uncharacterized oxidoreductase yjmC PFAM: Malate%2FL-lactate dehydrogenase KEGG: tth:TT_P0035 dehydrogenase;Dbxref=Genbank:YP_001533880.1,GeneID:5713443;gbkey=CDS;product=dehydrogenase;protein_id=YP_001533880.1;transl_table=11
NC_009952.1	RefSeq	gene	2703342	2703722	.	-	.	ID=gene2582;Name=Dshi_2547;Dbxref=GeneID:5713444;gbkey=Gene;locus_tag=Dshi_2547
NC_009952.1	RefSeq	CDS	2703342	2703722	.	-	0	ID=cds2538;Name=YP_001533881.1;Parent=gene2582;Dbxref=Genbank:YP_001533881.1,GeneID:5713444;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533881.1;transl_table=11
NC_009952.1	RefSeq	gene	2703739	2707950	.	-	.	ID=gene2583;Name=Dshi_2548;Dbxref=GeneID:5713445;gbkey=Gene;locus_tag=Dshi_2548
NC_009952.1	RefSeq	CDS	2703739	2707950	.	-	0	ID=cds2539;Name=YP_001533882.1;Parent=gene2583;Note=COG5412: Phage-related protein;Dbxref=Genbank:YP_001533882.1,GeneID:5713445;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533882.1;transl_table=11
NC_009952.1	RefSeq	gene	2707954	2709441	.	-	.	ID=gene2584;Name=Dshi_2549;Dbxref=GeneID:5713446;gbkey=Gene;locus_tag=Dshi_2549
NC_009952.1	RefSeq	CDS	2707954	2709441	.	-	0	ID=cds2540;Name=YP_001533883.1;Parent=gene2584;Note=PFAM: cell surface receptor IPT%2FTIG domain protein KEGG: rrs:RoseRS_1653 hypothetical protein;Dbxref=Genbank:YP_001533883.1,GeneID:5713446;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533883.1;transl_table=11
NC_009952.1	RefSeq	gene	2709454	2713869	.	-	.	ID=gene2585;Name=Dshi_2550;Dbxref=GeneID:5713447;gbkey=Gene;locus_tag=Dshi_2550
NC_009952.1	RefSeq	CDS	2709454	2713869	.	-	0	ID=cds2541;Name=YP_001533884.1;Parent=gene2585;Note=PFAM: impB%2FmucB%2FsamB family SSF50969: quinoprotein amine dehydrogenase%2C beta chain-like KEGG: gme:Gmet_1144 hypothetical protein;Dbxref=Genbank:YP_001533884.1,GeneID:5713447;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533884.1;transl_table=11
NC_009952.1	RefSeq	gene	2713924	2715474	.	-	.	ID=gene2586;Name=Dshi_2551;Dbxref=GeneID:5713448;gbkey=Gene;locus_tag=Dshi_2551
NC_009952.1	RefSeq	CDS	2713924	2715474	.	-	0	ID=cds2542;Name=YP_001533885.1;Parent=gene2586;Note=KEGG: gme:Gmet_1142 hypothetical protein;Dbxref=Genbank:YP_001533885.1,GeneID:5713448;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533885.1;transl_table=11
NC_009952.1	RefSeq	gene	2715478	2718297	.	-	.	ID=gene2587;Name=Dshi_2552;Dbxref=GeneID:5713449;gbkey=Gene;locus_tag=Dshi_2552
NC_009952.1	RefSeq	CDS	2715478	2718297	.	-	0	ID=cds2543;Name=YP_001533886.1;Parent=gene2587;Note=TIGR02243: conserved hypothetical protein%2C phage tail-like region KEGG: aeh:Mlg_1745 hypothetical protein;Dbxref=Genbank:YP_001533886.1,GeneID:5713449;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533886.1;transl_table=11
NC_009952.1	RefSeq	gene	2718294	2719487	.	-	.	ID=gene2588;Name=Dshi_2553;Dbxref=GeneID:5713450;gbkey=Gene;locus_tag=Dshi_2553
NC_009952.1	RefSeq	CDS	2718294	2719487	.	-	0	ID=cds2544;Name=YP_001533887.1;Parent=gene2588;Dbxref=Genbank:YP_001533887.1,GeneID:5713450;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533887.1;transl_table=11
NC_009952.1	RefSeq	gene	2719489	2719884	.	-	.	ID=gene2589;Name=Dshi_2554;Dbxref=GeneID:5713451;gbkey=Gene;locus_tag=Dshi_2554
NC_009952.1	RefSeq	CDS	2719489	2719884	.	-	0	ID=cds2545;Name=YP_001533888.1;Parent=gene2589;Note=PFAM: Gene 25-like lysozyme KEGG: aeh:Mlg_1747 hypothetical protein%3B related to gene 25-like lysozyme;Dbxref=Genbank:YP_001533888.1,GeneID:5713451;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533888.1;transl_table=11
NC_009952.1	RefSeq	gene	2719895	2720716	.	-	.	ID=gene2590;Name=Dshi_2555;Dbxref=GeneID:5713452;gbkey=Gene;locus_tag=Dshi_2555
NC_009952.1	RefSeq	CDS	2719895	2720716	.	-	0	ID=cds2546;Name=YP_001533889.1;Parent=gene2590;Note=PFAM: Protein of unknown function%2C DUF586 COG3501: Uncharacterized protein conserved in bacteria;Dbxref=Genbank:YP_001533889.1,GeneID:5713452;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533889.1;transl_table=11
NC_009952.1	RefSeq	gene	2720713	2721852	.	-	.	ID=gene2591;Name=Dshi_2556;Dbxref=GeneID:5713453;gbkey=Gene;locus_tag=Dshi_2556
NC_009952.1	RefSeq	CDS	2720713	2721852	.	-	0	ID=cds2547;Name=YP_001533890.1;Parent=gene2591;Note=PFAM: Phage late control gene D protein KEGG: gme:Gmet_1137 hypothetical protein COG3500: Phage protein D;Dbxref=Genbank:YP_001533890.1,GeneID:5713453;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533890.1;transl_table=11
NC_009952.1	RefSeq	gene	2721857	2722219	.	-	.	ID=gene2592;Name=Dshi_2557;Dbxref=GeneID:5713454;gbkey=Gene;locus_tag=Dshi_2557
NC_009952.1	RefSeq	CDS	2721857	2722219	.	-	0	ID=cds2548;Name=YP_001533891.1;Parent=gene2592;Dbxref=Genbank:YP_001533891.1,GeneID:5713454;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533891.1;transl_table=11
NC_009952.1	RefSeq	gene	2722223	2722885	.	-	.	ID=gene2593;Name=Dshi_2558;Dbxref=GeneID:5713455;gbkey=Gene;locus_tag=Dshi_2558
NC_009952.1	RefSeq	CDS	2722223	2722885	.	-	0	ID=cds2549;Name=YP_001533892.1;Parent=gene2593;Dbxref=Genbank:YP_001533892.1,GeneID:5713455;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533892.1;transl_table=11
NC_009952.1	RefSeq	gene	2723112	2724446	.	-	.	ID=gene2594;Name=Dshi_2559;Dbxref=GeneID:5713456;gbkey=Gene;locus_tag=Dshi_2559
NC_009952.1	RefSeq	CDS	2723112	2724446	.	-	0	ID=cds2550;Name=YP_001533893.1;Parent=gene2594;Note=Swiss-Prot: P55530-Uncharacterized AAA family ATPase y4kL PFAM: AAA ATPase central domain protein SMART: AAA ATPase KEGG: gme:Gmet_1133 AAA ATPase%2C central region%3B central domain protein;Dbxref=Genbank:YP_001533893.1,GeneID:5713456;gbkey=CDS;product=AAA ATPase;protein_id=YP_001533893.1;transl_table=11
NC_009952.1	RefSeq	gene	2724452	2725531	.	-	.	ID=gene2595;Name=Dshi_2560;Dbxref=GeneID:5713457;gbkey=Gene;locus_tag=Dshi_2560
NC_009952.1	RefSeq	CDS	2724452	2725531	.	-	0	ID=cds2551;Name=YP_001533894.1;Parent=gene2595;Note=%23%23;Dbxref=Genbank:YP_001533894.1,GeneID:5713457;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533894.1;transl_table=11
NC_009952.1	RefSeq	gene	2725535	2726218	.	-	.	ID=gene2596;Name=Dshi_2561;Dbxref=GeneID:5713458;gbkey=Gene;locus_tag=Dshi_2561
NC_009952.1	RefSeq	CDS	2725535	2726218	.	-	0	ID=cds2552;Name=YP_001533895.1;Parent=gene2596;Dbxref=Genbank:YP_001533895.1,GeneID:5713458;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533895.1;transl_table=11
NC_009952.1	RefSeq	gene	2726402	2727220	.	-	.	ID=gene2597;Name=Dshi_2562;Dbxref=GeneID:5713459;gbkey=Gene;locus_tag=Dshi_2562
NC_009952.1	RefSeq	CDS	2726402	2727220	.	-	0	ID=cds2553;Name=YP_001533896.1;Parent=gene2597;Dbxref=Genbank:YP_001533896.1,GeneID:5713459;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533896.1;transl_table=11
NC_009952.1	RefSeq	gene	2727217	2727726	.	-	.	ID=gene2598;Name=Dshi_2563;Dbxref=GeneID:5713460;gbkey=Gene;locus_tag=Dshi_2563
NC_009952.1	RefSeq	CDS	2727217	2727726	.	-	0	ID=cds2554;Name=YP_001533897.1;Parent=gene2598;Note=TIGRFAM: conserved hypothetical phage tail protein PFAM: conserved hypothetical protein KEGG: aeh:Mlg_1757 conserved hypothetical phage tail protein%3B phage tail region;Dbxref=Genbank:YP_001533897.1,GeneID:5713460;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533897.1;transl_table=11
NC_009952.1	RefSeq	gene	2727753	2730098	.	-	.	ID=gene2599;Name=Dshi_2564;Dbxref=GeneID:5713461;gbkey=Gene;locus_tag=Dshi_2564
NC_009952.1	RefSeq	CDS	2727753	2730098	.	-	0	ID=cds2555;Name=YP_001533898.1;Parent=gene2599;Note=PFAM: tail sheath protein KEGG: gme:Gmet_1128 phage tail sheath protein%3B related to phage tail sheath protein;Dbxref=Genbank:YP_001533898.1,GeneID:5713461;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533898.1;transl_table=11
NC_009952.1	RefSeq	STS	2730291	2731333	.	+	.	ID=id49;Dbxref=UniSTS:474271;gbkey=STS
NC_009952.1	RefSeq	gene	2730319	2730960	.	-	.	ID=gene2600;Name=Dshi_2565;Dbxref=GeneID:5713462;gbkey=Gene;locus_tag=Dshi_2565
NC_009952.1	RefSeq	CDS	2730319	2730960	.	-	0	ID=cds2556;Name=YP_001533899.1;Parent=gene2600;Note=Swiss-Prot: O32197-Sensory transduction protein PFAM: regulatory protein LuxR%3B response regulator receiver KEGG: sen:SACE_5003 two component transcriptional regulator%2C LuxR family%3B colocated with histidine kinase;Dbxref=Genbank:YP_001533899.1,GeneID:5713462;gbkey=CDS;product=response regulator protein;protein_id=YP_001533899.1;transl_table=11
NC_009952.1	RefSeq	gene	2731137	2733368	.	+	.	ID=gene2601;Name=Dshi_2566;Dbxref=GeneID:5713463;gbkey=Gene;locus_tag=Dshi_2566
NC_009952.1	RefSeq	CDS	2731137	2733368	.	+	0	ID=cds2557;Name=YP_001533900.1;Parent=gene2601;Note=PFAM: dehydrogenase E1 component%3B Transketolase central region%3B Transketolase domain protein%3B transketolase %2F dehydrogenase;Dbxref=Genbank:YP_001533900.1,GeneID:5713463;gbkey=CDS;product=putative bifunctional enzyme;protein_id=YP_001533900.1;transl_table=11
NC_009952.1	RefSeq	gene	2733766	2736072	.	+	.	ID=gene2602;Name=Dshi_2567;Dbxref=GeneID:5713464;gbkey=Gene;locus_tag=Dshi_2567
NC_009952.1	RefSeq	CDS	2733766	2736072	.	+	0	ID=cds2558;Name=YP_001533901.1;Parent=gene2602;Note=Swiss-Prot: P26489-Sensor protein fixL TIGRFAM: PAS sensor protein PFAM: ATP-binding region ATPase domain protein%3B histidine kinase A domain protein%3B Cache domain protein%3B PAS fold-3 domain protein%3B PAS fold-4 domain protein SMART: PAS domain containing protein%2C colocated with response regulator;Dbxref=Genbank:YP_001533901.1,GeneID:5713464;gbkey=CDS;product=multi-sensor signal transduction histidine kinase;protein_id=YP_001533901.1;transl_table=11
NC_009952.1	RefSeq	gene	2736065	2736709	.	+	.	ID=gene2603;Name=Dshi_2568;Dbxref=GeneID:5713465;gbkey=Gene;locus_tag=Dshi_2568
NC_009952.1	RefSeq	CDS	2736065	2736709	.	+	0	ID=cds2559;Name=YP_001533902.1;Parent=gene2603;Note=Swiss-Prot: P10958-Transcriptional regulatory protein fixJ PFAM: regulatory protein LuxR%3B response regulator receiver KEGG: rde:RD1_3086 transcriptional regulatory protein FixJ%2C putative%3B colocated with histidine kinase;Dbxref=Genbank:YP_001533902.1,GeneID:5713465;gbkey=CDS;product=response regulator protein;protein_id=YP_001533902.1;transl_table=11
NC_009952.1	RefSeq	gene	2736718	2737746	.	-	.	ID=gene2604;Name=Dshi_2569;Dbxref=GeneID:5713466;gbkey=Gene;locus_tag=Dshi_2569
NC_009952.1	RefSeq	CDS	2736718	2737746	.	-	0	ID=cds2560;Name=YP_001533903.1;Parent=gene2604;Note=Swiss-Prot: P75747-Protein abrB %28multi-pass membrane protein %2F probably involved in gene regulation%29 PFAM: putative ammonia monooxygenase KEGG: rde:RD1_2159 hypothetical protein%3B similar to Protein abrB;Dbxref=Genbank:YP_001533903.1,GeneID:5713466;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533903.1;transl_table=11
NC_009952.1	RefSeq	gene	2737743	2738384	.	-	.	ID=gene2605;Name=Dshi_2570;Dbxref=GeneID:5713467;gbkey=Gene;locus_tag=Dshi_2570
NC_009952.1	RefSeq	CDS	2737743	2738384	.	-	0	ID=cds2561;Name=YP_001533904.1;Parent=gene2605;Note=Swiss-Prot: P76114-Uncharacterized HTH-type transcriptional regulator yncC PFAM: regulatory protein GntR HTH%3B GntR domain protein KEGG: bja:bll2319 transcriptional regulatory protein%3B GntR family;Dbxref=Genbank:YP_001533904.1,GeneID:5713467;gbkey=CDS;product=transcriptional regulator;protein_id=YP_001533904.1;transl_table=11
NC_009952.1	RefSeq	gene	2738539	2738622	.	-	.	ID=gene2606;Name=Dshi_6045;Dbxref=GeneID:5713468;gbkey=Gene;locus_tag=Dshi_6045
NC_009952.1	RefSeq	tRNA	2738539	2738622	.	-	.	ID=rna44;Parent=gene2606;Dbxref=GeneID:5713468;codons=9;gbkey=tRNA;product=tRNA-Tyr
NC_009952.1	RefSeq	exon	2738539	2738622	.	-	.	ID=id50;Parent=rna44;Dbxref=GeneID:5713468;codons=9;gbkey=tRNA;product=tRNA-Tyr
NC_009952.1	RefSeq	gene	2738741	2739532	.	+	.	ID=gene2607;Name=Dshi_2571;Dbxref=GeneID:5713469;gbkey=Gene;locus_tag=Dshi_2571
NC_009952.1	RefSeq	CDS	2738741	2739532	.	+	0	ID=cds2562;Name=YP_001533905.1;Parent=gene2607;Note=Swiss-Prot: P63177- 23S rRNA %28guanosine-2-O-%29-methyltransferase rlmB TIGRFAM: RNA methyltransferase%2C TrmH family%2C group 3 PFAM: tRNA%2FrRNA methyltransferase %28SpoU%29%3B RNA 2-O ribose methyltransferase substrate binding KEGG: rsp:RSP_2239 tRNA%2FrRNA metyltransferase%3B TrmH family%2C group 3;Dbxref=Genbank:YP_001533905.1,GeneID:5713469;gbkey=CDS;product=RNA methyltransferase;protein_id=YP_001533905.1;transl_table=11
NC_009952.1	RefSeq	gene	2739576	2739908	.	+	.	ID=gene2608;Name=Dshi_2572;Dbxref=GeneID:5713470;gbkey=Gene;locus_tag=Dshi_2572
NC_009952.1	RefSeq	CDS	2739576	2739908	.	+	0	ID=cds2563;Name=YP_001533906.1;Parent=gene2608;Note=KEGG: jan:Jann_2800 hypothetical protein;Dbxref=Genbank:YP_001533906.1,GeneID:5713470;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533906.1;transl_table=11
NC_009952.1	RefSeq	gene	2740015	2740470	.	+	.	ID=gene2609;Name=Dshi_2573;Dbxref=GeneID:5713471;gbkey=Gene;locus_tag=Dshi_2573
NC_009952.1	RefSeq	CDS	2740015	2740470	.	+	0	ID=cds2564;Name=YP_001533907.1;Parent=gene2609;Note=KEGG: rde:RD1_2147 hypothetical protein;Dbxref=Genbank:YP_001533907.1,GeneID:5713471;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533907.1;transl_table=11
NC_009952.1	RefSeq	gene	2740741	2741226	.	+	.	ID=gene2610;Name=Dshi_2574;Dbxref=GeneID:5713472;gbkey=Gene;locus_tag=Dshi_2574
NC_009952.1	RefSeq	CDS	2740741	2741226	.	+	0	ID=cds2565;Name=YP_001533908.1;Parent=gene2610;Note=PFAM: CoA-binding domain protein KEGG: sil:SPO1153 CoA-binding domain protein;Dbxref=Genbank:YP_001533908.1,GeneID:5713472;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533908.1;transl_table=11
NC_009952.1	RefSeq	gene	2741315	2741623	.	-	.	ID=gene2611;Name=hisE;Dbxref=GeneID:5713473;gbkey=Gene;gene=hisE;locus_tag=Dshi_2575
NC_009952.1	RefSeq	CDS	2741315	2741623	.	-	0	ID=cds2566;Name=YP_001533909.1;Parent=gene2611;Note=catalyzes the formation of 1-%285-phosphoribosyl%29-AMP from 1-%285-phosphoribolsyl%29-ATP in histidine biosynthesis;Dbxref=Genbank:YP_001533909.1,GeneID:5713473;gbkey=CDS;gene=hisE;product=phosphoribosyl-ATP pyrophosphatase;protein_id=YP_001533909.1;transl_table=11
NC_009952.1	RefSeq	gene	2741620	2742381	.	-	.	ID=gene2612;Name=hisF;Dbxref=GeneID:5713474;gbkey=Gene;gene=hisF;locus_tag=Dshi_2576
NC_009952.1	RefSeq	CDS	2741620	2742381	.	-	0	ID=cds2567;Name=YP_001533910.1;Parent=gene2612;Note=catalyzes the conversion of 5-%5B%285-phospho-1-deoxyribulos-1-ylamino%29methylideneamino%5D-1-%285-phosphoribosyl%29imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate%2C 5-aminoimidazol-4-carboxamideribonucleotide and glutamate%3B the HisF subunit acts as a cyclase;Dbxref=Genbank:YP_001533910.1,GeneID:5713474;gbkey=CDS;gene=hisF;product=imidazole glycerol phosphate synthase subunit HisF;protein_id=YP_001533910.1;transl_table=11
NC_009952.1	RefSeq	gene	2742482	2743606	.	+	.	ID=gene2613;Name=Dshi_2577;Dbxref=GeneID:5713475;gbkey=Gene;locus_tag=Dshi_2577
NC_009952.1	RefSeq	CDS	2742482	2743606	.	+	0	ID=cds2568;Name=YP_001533911.1;Parent=gene2613;Note=PFAM: putative RNA methylase KEGG: pde:Pden_2378 putative RNA methylase;Dbxref=Genbank:YP_001533911.1,GeneID:5713475;gbkey=CDS;product=putative RNA methylase;protein_id=YP_001533911.1;transl_table=11
NC_009952.1	RefSeq	gene	2743867	2744589	.	-	.	ID=gene2614;Name=hisA;Dbxref=GeneID:5713476;gbkey=Gene;gene=hisA;locus_tag=Dshi_2578
NC_009952.1	RefSeq	CDS	2743867	2744589	.	-	0	ID=cds2569;Name=YP_001533912.1;Parent=gene2614;Note=catalyzes the formation of 5-%285-phospho-1-deoxyribulos-1-ylamino%29methylideneamino-l-%285-phosphoribosyl%29imidazole-4-carboxamide from 1-%285-phosphoribosyl%29-5-%5B%285-phosphoribosylamino%29methylideneamino%5D imidazole-4-carboxamide;Dbxref=Genbank:YP_001533912.1,GeneID:5713476;gbkey=CDS;gene=hisA;product=1-%285-phosphoribosyl%29-5-%5B%285-phosphoribosylamino%29methylideneamino%5D imidazole-4-carboxamide isomerase;protein_id=YP_001533912.1;transl_table=11
NC_009952.1	RefSeq	gene	2744733	2745137	.	+	.	ID=gene2615;Name=Dshi_2579;Dbxref=GeneID:5713477;gbkey=Gene;locus_tag=Dshi_2579
NC_009952.1	RefSeq	CDS	2744733	2745137	.	+	0	ID=cds2570;Name=YP_001533913.1;Parent=gene2615;Note=COG4731: Uncharacterized protein conserved in bacteria;Dbxref=Genbank:YP_001533913.1,GeneID:5713477;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533913.1;transl_table=11
NC_009952.1	RefSeq	gene	2745303	2747807	.	-	.	ID=gene2616;Name=hrpB;Dbxref=GeneID:5713478;gbkey=Gene;gene=hrpB;locus_tag=Dshi_2580
NC_009952.1	RefSeq	CDS	2745303	2747807	.	-	0	ID=cds2571;Name=YP_001533914.1;Parent=gene2616;Note=Swiss-Prot: P37024- ATP-dependent RNA helicase hrpB TIGRFAM: ATP-dependent helicase HrpB PFAM: helicase domain protein%3B helicase-associated domain protein%3B DEAD%2FDEAH box helicase domain protein%3B Helicase ATP-dependent domain protein SMART: DEAD-like helicases;Dbxref=Genbank:YP_001533914.1,GeneID:5713478;gbkey=CDS;gene=hrpB;product=ATP-dependent RNA helicase;protein_id=YP_001533914.1;transl_table=11
NC_009952.1	RefSeq	gene	2747856	2748656	.	-	.	ID=gene2617;Name=Dshi_2581;Dbxref=GeneID:5713479;gbkey=Gene;locus_tag=Dshi_2581
NC_009952.1	RefSeq	CDS	2747856	2748656	.	-	0	ID=cds2572;Name=YP_001533915.1;Parent=gene2617;Dbxref=Genbank:YP_001533915.1,GeneID:5713479;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533915.1;transl_table=11
NC_009952.1	RefSeq	gene	2748739	2749815	.	+	.	ID=gene2618;Name=Dshi_2582;Dbxref=GeneID:5713480;gbkey=Gene;locus_tag=Dshi_2582
NC_009952.1	RefSeq	CDS	2748739	2749815	.	+	0	ID=cds2573;Name=YP_001533916.1;Parent=gene2618;Note=functions in transport of arginine%2Fornithine%3B inner membrane ATPase that cleaves ATP and phosphorylates two periplasmic proteins that function as two distinct transport systems%2C the AO %28arginine and ornithine%29 and LAO %28lysine%2C arginine%2C and ornithine%29 periplasmic binding proteins;Dbxref=Genbank:YP_001533916.1,GeneID:5713480;gbkey=CDS;product=arginine%2Fornithine transport system ATPase;protein_id=YP_001533916.1;transl_table=11
NC_009952.1	RefSeq	gene	2749939	2750226	.	+	.	ID=gene2619;Name=rpmB;Dbxref=GeneID:5713481;gbkey=Gene;gene=rpmB;locus_tag=Dshi_2583
NC_009952.1	RefSeq	CDS	2749939	2750226	.	+	0	ID=cds2574;Name=YP_001533917.1;Parent=gene2619;Note=required for 70S ribosome assembly;Dbxref=Genbank:YP_001533917.1,GeneID:5713481;gbkey=CDS;gene=rpmB;product=50S ribosomal protein L28;protein_id=YP_001533917.1;transl_table=11
NC_009952.1	RefSeq	gene	2750551	2750907	.	+	.	ID=gene2620;Name=Dshi_2584;Dbxref=GeneID:5713482;gbkey=Gene;locus_tag=Dshi_2584
NC_009952.1	RefSeq	CDS	2750551	2750907	.	+	0	ID=cds2575;Name=YP_001533918.1;Parent=gene2620;Note=KEGG: rsq:Rsph17025_3115 hypothetical protein;Dbxref=Genbank:YP_001533918.1,GeneID:5713482;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533918.1;transl_table=11
NC_009952.1	RefSeq	gene	2750951	2751463	.	+	.	ID=gene2621;Name=Dshi_2585;Dbxref=GeneID:5713483;gbkey=Gene;locus_tag=Dshi_2585
NC_009952.1	RefSeq	CDS	2750951	2751463	.	+	0	ID=cds2576;Name=YP_001533919.1;Parent=gene2621;Note=PFAM: protein of unknown function DUF461 KEGG: rde:RD1_1682 hypothetical protein COG2847: Uncharacterized protein conserved in bacteria;Dbxref=Genbank:YP_001533919.1,GeneID:5713483;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533919.1;transl_table=11
NC_009952.1	RefSeq	gene	2751482	2752237	.	-	.	ID=gene2622;Name=Dshi_2586;Dbxref=GeneID:5713484;gbkey=Gene;locus_tag=Dshi_2586
NC_009952.1	RefSeq	CDS	2751482	2752237	.	-	0	ID=cds2577;Name=YP_001533920.1;Parent=gene2622;Note=PFAM: HpcH%2FHpaI aldolase KEGG: jan:Jann_2691 HpcH%2FHpaI aldolase;Dbxref=Genbank:YP_001533920.1,GeneID:5713484;gbkey=CDS;product=HpcH%2FHpaI aldolase;protein_id=YP_001533920.1;transl_table=11
NC_009952.1	RefSeq	gene	2752527	2753555	.	+	.	ID=gene2623;Name=Dshi_2587;Dbxref=GeneID:5713485;gbkey=Gene;locus_tag=Dshi_2587
NC_009952.1	RefSeq	CDS	2752527	2753555	.	+	0	ID=cds2578;Name=YP_001533921.1;Parent=gene2623;Note=PFAM: Metallo-beta-lactamase superfamily COG1236: Predicted exonuclease of the beta-lactamase fold involved in RNA processing%3B related to beta-lactamases;Dbxref=Genbank:YP_001533921.1,GeneID:5713485;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533921.1;transl_table=11
NC_009952.1	RefSeq	gene	2753552	2754448	.	+	.	ID=gene2624;Name=Dshi_2588;Dbxref=GeneID:5713486;gbkey=Gene;locus_tag=Dshi_2588
NC_009952.1	RefSeq	CDS	2753552	2754448	.	+	0	ID=cds2579;Name=YP_001533922.1;Parent=gene2624;Note=PFAM: Alpha%2Fbeta hydrolase fold-3 domain protein COG0657: Esterase%2Flipase;Dbxref=Genbank:YP_001533922.1,GeneID:5713486;gbkey=CDS;product=putative esterase%2Flipase;protein_id=YP_001533922.1;transl_table=11
NC_009952.1	RefSeq	gene	2754445	2756049	.	+	.	ID=gene2625;Name=Dshi_2589;Dbxref=GeneID:5713487;gbkey=Gene;locus_tag=Dshi_2589
NC_009952.1	RefSeq	CDS	2754445	2756049	.	+	0	ID=cds2580;Name=YP_001533923.1;Parent=gene2625;Note=catalyzes the ATP-dependent formation of a phosphodiester at the site of a single strand break in duplex DNA;Dbxref=Genbank:YP_001533923.1,GeneID:5713487;gbkey=CDS;product=ATP-dependent DNA ligase;protein_id=YP_001533923.1;transl_table=11
NC_009952.1	RefSeq	gene	2756272	2756904	.	+	.	ID=gene2626;Name=Dshi_2590;Dbxref=GeneID:5713488;gbkey=Gene;locus_tag=Dshi_2590
NC_009952.1	RefSeq	CDS	2756272	2756904	.	+	0	ID=cds2581;Name=YP_001533924.1;Parent=gene2626;Note=PFAM: integrase family protein KEGG: rsh:Rsph17029_2267 phage integrase family protein%3B related to phage integrase;Dbxref=Genbank:YP_001533924.1,GeneID:5713488;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533924.1;transl_table=11
NC_009952.1	RefSeq	gene	2757021	2757491	.	-	.	ID=gene2627;Name=Dshi_2591;Dbxref=GeneID:5713489;gbkey=Gene;locus_tag=Dshi_2591
NC_009952.1	RefSeq	CDS	2757021	2757491	.	-	0	ID=cds2582;Name=YP_001533925.1;Parent=gene2627;Note=TIGRFAM: putative transcriptional regulator%2C Rrf2 family PFAM: protein of unknown function UPF0074 KEGG: rde:RD1_1855 transcriptional regulator%2C rrf2 family%2C putative;Dbxref=Genbank:YP_001533925.1,GeneID:5713489;gbkey=CDS;product=transcriptional regulator;protein_id=YP_001533925.1;transl_table=11
NC_009952.1	RefSeq	gene	2757530	2758741	.	+	.	ID=gene2628;Name=Dshi_2592;Dbxref=GeneID:5713490;gbkey=Gene;locus_tag=Dshi_2592
NC_009952.1	RefSeq	CDS	2757530	2758741	.	+	0	ID=cds2583;Name=YP_001533926.1;Parent=gene2628;Note=Swiss-Prot: P31521- 47 kDa protein%3B PFAM: cobalamin synthesis protein P47K COG0523: Putative GTPases %28G3E family%29;Dbxref=Genbank:YP_001533926.1,GeneID:5713490;gbkey=CDS;product=putative 47 kDa protein;protein_id=YP_001533926.1;transl_table=11
NC_009952.1	RefSeq	gene	2758738	2759373	.	+	.	ID=gene2629;Name=Dshi_2593;Dbxref=GeneID:5713491;gbkey=Gene;locus_tag=Dshi_2593
NC_009952.1	RefSeq	CDS	2758738	2759373	.	+	0	ID=cds2584;Name=YP_001533927.1;Parent=gene2629;Note=PFAM: Protein of unknown function DUF1826 KEGG: rde:RD1_1857 hypothetical protein;Dbxref=Genbank:YP_001533927.1,GeneID:5713491;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533927.1;transl_table=11
NC_009952.1	RefSeq	gene	2759370	2759642	.	+	.	ID=gene2630;Name=Dshi_2594;Dbxref=GeneID:5713492;gbkey=Gene;locus_tag=Dshi_2594
NC_009952.1	RefSeq	CDS	2759370	2759642	.	+	0	ID=cds2585;Name=YP_001533928.1;Parent=gene2630;Dbxref=Genbank:YP_001533928.1,GeneID:5713492;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533928.1;transl_table=11
NC_009952.1	RefSeq	gene	2759653	2761176	.	+	.	ID=gene2631;Name=Dshi_2595;Dbxref=GeneID:5713493;gbkey=Gene;locus_tag=Dshi_2595
NC_009952.1	RefSeq	CDS	2759653	2761176	.	+	0	ID=cds2586;Name=YP_001533929.1;Parent=gene2631;Note=PFAM: extracellular solute-binding protein family Swiss-Prot: P76128-Putative ABC transporter periplasmic-binding protein yddS %5BPrecursor%5D;Dbxref=Genbank:YP_001533929.1,GeneID:5713493;gbkey=CDS;product=putative extracellular solute-binding protein;protein_id=YP_001533929.1;transl_table=11
NC_009952.1	RefSeq	gene	2761173	2761856	.	+	.	ID=gene2632;Name=Dshi_2596;Dbxref=GeneID:5713494;gbkey=Gene;locus_tag=Dshi_2596
NC_009952.1	RefSeq	CDS	2761173	2761856	.	+	0	ID=cds2587;Name=YP_001533930.1;Parent=gene2632;Note=PFAM: ABC transporter related SMART: AAA ATPase Swiss-Prot: P33593-Nickel import ATP-binding protein nikD COG0444:ABC-type dipeptide%2Foligopeptide%2Fnickel transport system%2C ATPase component%3B ATPase component;Dbxref=Genbank:YP_001533930.1,GeneID:5713494;gbkey=CDS;product=ABC transporter;protein_id=YP_001533930.1;transl_table=11
NC_009952.1	RefSeq	gene	2761850	2762575	.	+	.	ID=gene2633;Name=Dshi_2597;Dbxref=GeneID:5713495;gbkey=Gene;locus_tag=Dshi_2597
NC_009952.1	RefSeq	CDS	2761850	2762575	.	+	0	ID=cds2588;Name=YP_001533931.1;Parent=gene2633;Note=PFAM: ABC transporter related SMART: AAA ATPase Swiss-Prot: P77622-Uncharacterized ABC transporter ATP-binding protein yddO COG1124: ABC-type dipeptide%2Foligopeptide%2Fnickel transport system%2C ATPase component%3B ATPase component;Dbxref=Genbank:YP_001533931.1,GeneID:5713495;gbkey=CDS;product=ABC transporter;protein_id=YP_001533931.1;transl_table=11
NC_009952.1	RefSeq	gene	2762572	2763510	.	+	.	ID=gene2634;Name=Dshi_2598;Dbxref=GeneID:5713496;gbkey=Gene;locus_tag=Dshi_2598
NC_009952.1	RefSeq	CDS	2762572	2763510	.	+	0	ID=cds2589;Name=YP_001533932.1;Parent=gene2634;Note=PFAM: binding-protein-dependent transport systems inner membrane component Swiss-Prot: P75798-Glutathione transport system permease protein gsiC COG0601: ABC-type dipeptide%2Foligopeptide%2Fnickel transport systems%2C permease components;Dbxref=Genbank:YP_001533932.1,GeneID:5713496;gbkey=CDS;product=binding-protein-dependent transport system permease;protein_id=YP_001533932.1;transl_table=11
NC_009952.1	RefSeq	gene	2763494	2764297	.	+	.	ID=gene2635;Name=Dshi_2599;Dbxref=GeneID:5713497;gbkey=Gene;locus_tag=Dshi_2599
NC_009952.1	RefSeq	CDS	2763494	2764297	.	+	0	ID=cds2590;Name=YP_001533933.1;Parent=gene2635;Note=PFAM: binding-protein-dependent transport systems inner membrane component Swiss-Prot: P0AFA9-Nickel transport system permease protein nikC COG0601: ABC-type dipeptide%2Foligopeptide%2Fnickel transport systems%2C permease components;Dbxref=Genbank:YP_001533933.1,GeneID:5713497;gbkey=CDS;product=binding-protein-dependent transport system permease;protein_id=YP_001533933.1;transl_table=11
NC_009952.1	RefSeq	gene	2764294	2765190	.	+	.	ID=gene2636;Name=Dshi_2600;Dbxref=GeneID:5713498;gbkey=Gene;locus_tag=Dshi_2600
NC_009952.1	RefSeq	CDS	2764294	2765190	.	+	0	ID=cds2591;Name=YP_001533934.1;Parent=gene2636;Note=PFAM: protein of unknown function DUF6 transmembrane KEGG: rde:RD1_1864 integral membrane protein%2C putative;Dbxref=Genbank:YP_001533934.1,GeneID:5713498;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533934.1;transl_table=11
NC_009952.1	RefSeq	gene	2765180	2766208	.	+	.	ID=gene2637;Name=Dshi_2601;Dbxref=GeneID:5713499;gbkey=Gene;locus_tag=Dshi_2601
NC_009952.1	RefSeq	CDS	2765180	2766208	.	+	0	ID=cds2592;Name=YP_001533935.1;Parent=gene2637;Note=PFAM: helix-turn-helix- domain containing protein AraC type KEGG: rde:RD1_0249 transcriptional regulator%2C AraC family%2C putative;Dbxref=Genbank:YP_001533935.1,GeneID:5713499;gbkey=CDS;product=putative transcriptional regulator;protein_id=YP_001533935.1;transl_table=11
NC_009952.1	RefSeq	gene	2766389	2767594	.	+	.	ID=gene2638;Name=Dshi_2602;Dbxref=GeneID:5713500;gbkey=Gene;locus_tag=Dshi_2602
NC_009952.1	RefSeq	CDS	2766389	2767594	.	+	0	ID=cds2593;Name=YP_001533936.1;Parent=gene2638;Note=Swiss-Prot: Q06319-Acyl-CoA dehydrogenase%2C short-chain specific PFAM: acyl-CoA dehydrogenase domain protein%3B Acyl-CoA dehydrogenase type 2 domain KEGG: rde:RD1_0250 acyl-CoA dehydrogenase%2C putative;Dbxref=Genbank:YP_001533936.1,GeneID:5713500;gbkey=CDS;product=acyl-CoA dehydrogenase;protein_id=YP_001533936.1;transl_table=11
NC_009952.1	RefSeq	gene	2767996	2769831	.	+	.	ID=gene2639;Name=Dshi_2603;Dbxref=GeneID:5713501;gbkey=Gene;locus_tag=Dshi_2603
NC_009952.1	RefSeq	CDS	2767996	2769831	.	+	0	ID=cds2594;Name=YP_001533937.1;Parent=gene2639;Note=Swiss-Prot: O31605-Oligoendopeptidase F homolog TIGRFAM: oligoendopeptidase%2C pepF%2FM3 family PFAM: peptidase M3A and M3B thimet%2Foligopeptidase F%3B Oligopeptidase F%3B pepF%2FM3 family;Dbxref=Genbank:YP_001533937.1,GeneID:5713501;gbkey=CDS;product=oligoendopeptidase;protein_id=YP_001533937.1;transl_table=11
NC_009952.1	RefSeq	gene	2769916	2770317	.	-	.	ID=gene2640;Name=Dshi_2604;Dbxref=GeneID:5713502;gbkey=Gene;locus_tag=Dshi_2604
NC_009952.1	RefSeq	CDS	2769916	2770317	.	-	0	ID=cds2595;Name=YP_001533938.1;Parent=gene2640;Note=Swiss-Prot: P64590-Inner membrane protein yhaH PFAM: protein of unknown function DUF805%3B similar to inner membrane protein yhaH;Dbxref=Genbank:YP_001533938.1,GeneID:5713502;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533938.1;transl_table=11
NC_009952.1	RefSeq	gene	2770330	2770554	.	-	.	ID=gene2641;Name=Dshi_2605;Dbxref=GeneID:5713503;gbkey=Gene;locus_tag=Dshi_2605
NC_009952.1	RefSeq	CDS	2770330	2770554	.	-	0	ID=cds2596;Name=YP_001533939.1;Parent=gene2641;Dbxref=Genbank:YP_001533939.1,GeneID:5713503;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533939.1;transl_table=11
NC_009952.1	RefSeq	gene	2770620	2770862	.	-	.	ID=gene2642;Name=Dshi_2606;Dbxref=GeneID:5713504;gbkey=Gene;locus_tag=Dshi_2606
NC_009952.1	RefSeq	CDS	2770620	2770862	.	-	0	ID=cds2597;Name=YP_001533940.1;Parent=gene2642;Note=SMART: zinc finger CDGSH-type domain protein KEGG: rde:RD1_1658 hypothetical protein;Dbxref=Genbank:YP_001533940.1,GeneID:5713504;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533940.1;transl_table=11
NC_009952.1	RefSeq	gene	2770982	2771284	.	-	.	ID=gene2643;Name=Dshi_2607;Dbxref=GeneID:5713505;gbkey=Gene;locus_tag=Dshi_2607
NC_009952.1	RefSeq	CDS	2770982	2771284	.	-	0	ID=cds2598;Name=YP_001533941.1;Parent=gene2643;Note=KEGG: sil:SPO0456 hypothetical protein;Dbxref=Genbank:YP_001533941.1,GeneID:5713505;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533941.1;transl_table=11
NC_009952.1	RefSeq	gene	2771502	2772488	.	-	.	ID=gene2644;Name=Dshi_2608;Dbxref=GeneID:5713506;gbkey=Gene;locus_tag=Dshi_2608
NC_009952.1	RefSeq	CDS	2771502	2772488	.	-	0	ID=cds2599;Name=YP_001533942.1;Parent=gene2644;Note=Swiss-Prot: P49305-Putative oxidoreductase ORF334 %2F Q07982-Glucose--fructose oxidoreductase %5BPrecursor%5D PFAM: oxidoreductase domain protein%3B Oxidoreductase domain KEGG: sit:TM1040_0565 oxidoreductase-like;Dbxref=Genbank:YP_001533942.1,GeneID:5713506;gbkey=CDS;product=putative oxidoreductase;protein_id=YP_001533942.1;transl_table=11
NC_009952.1	RefSeq	gene	2772541	2773437	.	-	.	ID=gene2645;Name=rpoH2;Dbxref=GeneID:5713507;gbkey=Gene;gene=rpoH2;locus_tag=Dshi_2609
NC_009952.1	RefSeq	CDS	2772541	2773437	.	-	0	ID=cds2600;Name=YP_001533943.1;Parent=gene2645;Note=binds with the catalytic core of RNA polymerase to produce the holoenzyme%3B this sigma factor is responsible for the expression of heat shock promoters;Dbxref=Genbank:YP_001533943.1,GeneID:5713507;gbkey=CDS;gene=rpoH2;product=RNA polymerase factor sigma-32;protein_id=YP_001533943.1;transl_table=11
NC_009952.1	RefSeq	gene	2773631	2774674	.	-	.	ID=gene2646;Name=rluD;Dbxref=GeneID:5713508;gbkey=Gene;gene=rluD;locus_tag=Dshi_2610
NC_009952.1	RefSeq	CDS	2773631	2774674	.	-	0	ID=cds2601;Name=YP_001533944.1;Parent=gene2646;Note=Swiss-Prot: P33643-Ribosomal large subunit pseudouridine synthase D TIGR00005: pseudouridine synthase%2C RluA family;Dbxref=Genbank:YP_001533944.1,GeneID:5713508;gbkey=CDS;gene=rluD;product=ribosomal large subunit pseudouridine synthase D;protein_id=YP_001533944.1;transl_table=11
NC_009952.1	RefSeq	gene	2774718	2775005	.	+	.	ID=gene2647;Name=Dshi_2611;Dbxref=GeneID:5713509;gbkey=Gene;locus_tag=Dshi_2611
NC_009952.1	RefSeq	CDS	2774718	2775005	.	+	0	ID=cds2602;Name=YP_001533945.1;Parent=gene2647;Dbxref=Genbank:YP_001533945.1,GeneID:5713509;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533945.1;transl_table=11
NC_009952.1	RefSeq	gene	2775209	2775895	.	-	.	ID=gene2648;Name=npdA;Dbxref=GeneID:5713510;gbkey=Gene;gene=npdA;locus_tag=Dshi_2612
NC_009952.1	RefSeq	CDS	2775209	2775895	.	-	0	ID=cds2603;Name=YP_001533946.1;Parent=gene2648;Note=Modulates the activities of several enzymes which are inactive in their acetylated form;Dbxref=Genbank:YP_001533946.1,GeneID:5713510;gbkey=CDS;gene=npdA;product=NAD-dependent deacetylase;protein_id=YP_001533946.1;transl_table=11
NC_009952.1	RefSeq	gene	2775951	2776406	.	+	.	ID=gene2649;Name=Dshi_2613;Dbxref=GeneID:5713511;gbkey=Gene;locus_tag=Dshi_2613
NC_009952.1	RefSeq	CDS	2775951	2776406	.	+	0	ID=cds2604;Name=YP_001533947.1;Parent=gene2649;Note=Swiss-Prot: O35016-Low molecular weight protein-tyrosine-phosphatase PFAM: low molecular weight phosphotyrosine protein phosphatase KEGG: sil:SPO0979 low molecular weight phosphotyrosine protein phosphatase;Dbxref=Genbank:YP_001533947.1,GeneID:5713511;gbkey=CDS;product=low molecular weight protein-tyrosine-phosphatase;protein_id=YP_001533947.1;transl_table=11
NC_009952.1	RefSeq	gene	2776403	2776708	.	-	.	ID=gene2650;Name=Dshi_2614;Dbxref=GeneID:5713512;gbkey=Gene;locus_tag=Dshi_2614
NC_009952.1	RefSeq	CDS	2776403	2776708	.	-	0	ID=cds2605;Name=YP_001533948.1;Parent=gene2650;Note=KEGG: sit:TM1040_0677 hypothetical protein;Dbxref=Genbank:YP_001533948.1,GeneID:5713512;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533948.1;transl_table=11
NC_009952.1	RefSeq	gene	2776824	2777627	.	-	.	ID=gene2651;Name=Dshi_2615;Dbxref=GeneID:5713513;gbkey=Gene;locus_tag=Dshi_2615
NC_009952.1	RefSeq	CDS	2776824	2777627	.	-	0	ID=cds2606;Name=YP_001533949.1;Parent=gene2651;Note=Swiss-Prot: P0AFN6-Inner membrane transport permease yadH PFAM: ABC-2 type transporter KEGG: sil:SPO0957 ABC transporter%2C permease protein COG1682 : ABC-type polysaccharide%2Fpolyol phosphate export systems%2C permease component%3B permease component;Dbxref=Genbank:YP_001533949.1,GeneID:5713513;gbkey=CDS;product=ABC transporter;protein_id=YP_001533949.1;transl_table=11
NC_009952.1	RefSeq	gene	2777782	2778405	.	+	.	ID=gene2652;Name=Dshi_2616;Dbxref=GeneID:5713514;gbkey=Gene;locus_tag=Dshi_2616
NC_009952.1	RefSeq	CDS	2777782	2778405	.	+	0	ID=cds2607;Name=YP_001533950.1;Parent=gene2652;Note=PFAM: GcrA cell cycle regulator KEGG: jan:Jann_1020 GcrA cell cycle regulator;Dbxref=Genbank:YP_001533950.1,GeneID:5713514;gbkey=CDS;product=putative gcrA cell cycle regulator;protein_id=YP_001533950.1;transl_table=11
NC_009952.1	RefSeq	gene	2778606	2779247	.	-	.	ID=gene2653;Name=Dshi_2617;Dbxref=GeneID:5713515;gbkey=Gene;locus_tag=Dshi_2617
NC_009952.1	RefSeq	CDS	2778606	2779247	.	-	0	ID=cds2608;Name=YP_001533951.1;Parent=gene2653;Note=KEGG: sde:Sde_2877 hypothetical protein;Dbxref=Genbank:YP_001533951.1,GeneID:5713515;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533951.1;transl_table=11
NC_009952.1	RefSeq	gene	2779585	2780955	.	+	.	ID=gene2654;Name=rimO;Dbxref=GeneID:5713516;gbkey=Gene;gene=rimO;locus_tag=Dshi_2618
NC_009952.1	RefSeq	CDS	2779585	2780955	.	+	0	ID=cds2609;Name=YP_001533952.1;Parent=gene2654;Note=catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit;Dbxref=Genbank:YP_001533952.1,GeneID:5713516;gbkey=CDS;gene=rimO;product=30S ribosomal protein S12 methylthiotransferase;protein_id=YP_001533952.1;transl_table=11
NC_009952.1	RefSeq	gene	2781030	2781365	.	+	.	ID=gene2655;Name=cutA;Dbxref=GeneID:5713517;gbkey=Gene;gene=cutA;locus_tag=Dshi_2619
NC_009952.1	RefSeq	CDS	2781030	2781365	.	+	0	ID=cds2610;Name=YP_001533953.1;Parent=gene2655;Note=Swiss-Prot: P69488-Divalent-cation tolerance protein cutA PFAM: CutA1 divalent ion tolerance protein;Dbxref=Genbank:YP_001533953.1,GeneID:5713517;gbkey=CDS;gene=cutA;product=putative divalent-cation tolerance protein;protein_id=YP_001533953.1;transl_table=11
NC_009952.1	RefSeq	gene	2781369	2781725	.	-	.	ID=gene2656;Name=Dshi_2620;Dbxref=GeneID:5713518;gbkey=Gene;locus_tag=Dshi_2620
NC_009952.1	RefSeq	CDS	2781369	2781725	.	-	0	ID=cds2611;Name=YP_001533954.1;Parent=gene2656;Note=KEGG: rde:RD1_3491 hypothetical protein;Dbxref=Genbank:YP_001533954.1,GeneID:5713518;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533954.1;transl_table=11
NC_009952.1	RefSeq	gene	2781735	2782070	.	-	.	ID=gene2657;Name=Dshi_2621;Dbxref=GeneID:5713519;gbkey=Gene;locus_tag=Dshi_2621
NC_009952.1	RefSeq	CDS	2781735	2782070	.	-	0	ID=cds2612;Name=YP_001533955.1;Parent=gene2657;Note=KEGG: sil:SPO0942 hypothetical protein;Dbxref=Genbank:YP_001533955.1,GeneID:5713519;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533955.1;transl_table=11
NC_009952.1	RefSeq	gene	2782124	2782372	.	-	.	ID=gene2658;Name=Dshi_2622;Dbxref=GeneID:5713520;gbkey=Gene;locus_tag=Dshi_2622
NC_009952.1	RefSeq	CDS	2782124	2782372	.	-	0	ID=cds2613;Name=YP_001533956.1;Parent=gene2658;Note=KEGG: sil:SPO0941 hypothetical protein;Dbxref=Genbank:YP_001533956.1,GeneID:5713520;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533956.1;transl_table=11
NC_009952.1	RefSeq	gene	2782469	2783221	.	-	.	ID=gene2659;Name=Dshi_2623;Dbxref=GeneID:5713521;gbkey=Gene;locus_tag=Dshi_2623
NC_009952.1	RefSeq	CDS	2782469	2783221	.	-	0	ID=cds2614;Name=YP_001533957.1;Parent=gene2659;Note=PFAM: peptidase M48 Ste24p KEGG: rde:RD1_1656 peptidase%2C M48 family%2C putative%3B Ste24p;Dbxref=Genbank:YP_001533957.1,GeneID:5713521;gbkey=CDS;product=peptidase M48;protein_id=YP_001533957.1;transl_table=11
NC_009952.1	RefSeq	gene	2783358	2783780	.	+	.	ID=gene2660;Name=Dshi_2624;Dbxref=GeneID:5713522;gbkey=Gene;locus_tag=Dshi_2624
NC_009952.1	RefSeq	CDS	2783358	2783780	.	+	0	ID=cds2615;Name=YP_001533958.1;Parent=gene2660;Note=KEGG: rde:RD1_1657 hypothetical protein;Dbxref=Genbank:YP_001533958.1,GeneID:5713522;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533958.1;transl_table=11
NC_009952.1	RefSeq	gene	2783790	2784044	.	+	.	ID=gene2661;Name=Dshi_2625;Dbxref=GeneID:5713523;gbkey=Gene;locus_tag=Dshi_2625
NC_009952.1	RefSeq	CDS	2783790	2784044	.	+	0	ID=cds2616;Name=YP_001533959.1;Parent=gene2661;Note=KEGG: sil:SPO0938 hypothetical protein;Dbxref=Genbank:YP_001533959.1,GeneID:5713523;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533959.1;transl_table=11
NC_009952.1	RefSeq	gene	2784148	2785326	.	+	.	ID=gene2662;Name=Dshi_2626;Dbxref=GeneID:5713524;gbkey=Gene;locus_tag=Dshi_2626
NC_009952.1	RefSeq	CDS	2784148	2785326	.	+	0	ID=cds2617;Name=YP_001533960.1;Parent=gene2662;Note=Swiss-Prot: P55682-Uncharacterized transporter y4wD PFAM: major facilitator superfamily MFS_1;Dbxref=Genbank:YP_001533960.1,GeneID:5713524;gbkey=CDS;product=putative major facilitator superfamily transporter;protein_id=YP_001533960.1;transl_table=11
NC_009952.1	RefSeq	gene	2785328	2785978	.	+	.	ID=gene2663;Name=Dshi_2627;Dbxref=GeneID:5713525;gbkey=Gene;locus_tag=Dshi_2627
NC_009952.1	RefSeq	CDS	2785328	2785978	.	+	0	ID=cds2618;Name=YP_001533961.1;Parent=gene2663;Note=Swiss-Prot: P0ACY1-Protein ydjA PFAM: nitroreductase KEGG: rsq:Rsph17025_0371 nitroreductase%3B related to nitroreductase;Dbxref=Genbank:YP_001533961.1,GeneID:5713525;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533961.1;transl_table=11
NC_009952.1	RefSeq	gene	2785975	2786685	.	+	.	ID=gene2664;Name=Dshi_2628;Dbxref=GeneID:5713526;gbkey=Gene;locus_tag=Dshi_2628
NC_009952.1	RefSeq	CDS	2785975	2786685	.	+	0	ID=cds2619;Name=YP_001533962.1;Parent=gene2664;Note=PFAM: Protein of unknown function %28DUF540%29;Dbxref=Genbank:YP_001533962.1,GeneID:5713526;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533962.1;transl_table=11
NC_009952.1	RefSeq	gene	2786713	2787000	.	-	.	ID=gene2665;Name=Dshi_2629;Dbxref=GeneID:5713527;gbkey=Gene;locus_tag=Dshi_2629
NC_009952.1	RefSeq	CDS	2786713	2787000	.	-	0	ID=cds2620;Name=YP_001533963.1;Parent=gene2665;Note=PFAM: protein of unknown function DUF1467 KEGG: sil:SPO0933 hypothetical protein;Dbxref=Genbank:YP_001533963.1,GeneID:5713527;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533963.1;transl_table=11
NC_009952.1	RefSeq	gene	2787004	2787408	.	-	.	ID=gene2666;Name=Dshi_2630;Dbxref=GeneID:5713528;gbkey=Gene;locus_tag=Dshi_2630
NC_009952.1	RefSeq	CDS	2787004	2787408	.	-	0	ID=cds2621;Name=YP_001533964.1;Parent=gene2666;Note=PFAM: Glyoxalase%2Fbleomycin resistance protein%2Fdioxygenase Swiss-Prot: P54540-Uncharacterized protein yqjC;Dbxref=Genbank:YP_001533964.1,GeneID:5713528;gbkey=CDS;product=putative glyoxalase;protein_id=YP_001533964.1;transl_table=11
NC_009952.1	RefSeq	gene	2787540	2788244	.	+	.	ID=gene2667;Name=Dshi_2631;Dbxref=GeneID:5713529;gbkey=Gene;locus_tag=Dshi_2631
NC_009952.1	RefSeq	CDS	2787540	2788244	.	+	0	ID=cds2622;Name=YP_001533965.1;Parent=gene2667;Note=PFAM: response regulator receiver KEGG: rde:RD1_1178 response regulator%2C putative;Dbxref=Genbank:YP_001533965.1,GeneID:5713529;gbkey=CDS;product=putative response regulator;protein_id=YP_001533965.1;transl_table=11
NC_009952.1	RefSeq	gene	2788411	2788605	.	+	.	ID=gene2668;Name=Dshi_2632;Dbxref=GeneID:5713530;gbkey=Gene;locus_tag=Dshi_2632
NC_009952.1	RefSeq	CDS	2788411	2788605	.	+	0	ID=cds2623;Name=YP_001533966.1;Parent=gene2668;Dbxref=Genbank:YP_001533966.1,GeneID:5713530;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533966.1;transl_table=11
NC_009952.1	RefSeq	gene	2788656	2790428	.	-	.	ID=gene2669;Name=aspS;Dbxref=GeneID:5713531;gbkey=Gene;gene=aspS;locus_tag=Dshi_2633
NC_009952.1	RefSeq	CDS	2788656	2790428	.	-	0	ID=cds2624;Name=YP_001533967.1;Parent=gene2669;Note=catalyzes a two-step reaction%2C first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA%3B contains discriminating and non-discriminating subtypes;Dbxref=Genbank:YP_001533967.1,GeneID:5713531;gbkey=CDS;gene=aspS;product=aspartyl-tRNA synthetase;protein_id=YP_001533967.1;transl_table=11
NC_009952.1	RefSeq	gene	2790528	2790977	.	-	.	ID=gene2670;Name=Dshi_2634;Dbxref=GeneID:5713532;gbkey=Gene;locus_tag=Dshi_2634
NC_009952.1	RefSeq	CDS	2790528	2790977	.	-	0	ID=cds2625;Name=YP_001533968.1;Parent=gene2670;Dbxref=Genbank:YP_001533968.1,GeneID:5713532;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533968.1;transl_table=11
NC_009952.1	RefSeq	gene	2791005	2791742	.	+	.	ID=gene2671;Name=Dshi_2635;Dbxref=GeneID:5713533;gbkey=Gene;locus_tag=Dshi_2635
NC_009952.1	RefSeq	CDS	2791005	2791742	.	+	0	ID=cds2626;Name=YP_001533969.1;Parent=gene2671;Note=PFAM: pentapeptide repeat protein;Dbxref=Genbank:YP_001533969.1,GeneID:5713533;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533969.1;transl_table=11
NC_009952.1	RefSeq	gene	2791785	2792408	.	-	.	ID=gene2672;Name=Dshi_2636;Dbxref=GeneID:5713534;gbkey=Gene;locus_tag=Dshi_2636
NC_009952.1	RefSeq	CDS	2791785	2792408	.	-	0	ID=cds2627;Name=YP_001533970.1;Parent=gene2672;Note=Swiss-Prot: Q9Z5D7-Bacteriochlorophyll synthase 23 kDa chain %284-vinyl reductase%29 TIGRFAM: bacteriochlorophyll 4-vinyl reductase PFAM: 4-vinyl reductase 4VR;Dbxref=Genbank:YP_001533970.1,GeneID:5713534;gbkey=CDS;product=bacteriochlorophyll synthase;protein_id=YP_001533970.1;transl_table=11
NC_009952.1	RefSeq	gene	2792408	2794051	.	-	.	ID=gene2673;Name=Dshi_2637;Dbxref=GeneID:5713535;gbkey=Gene;locus_tag=Dshi_2637
NC_009952.1	RefSeq	CDS	2792408	2794051	.	-	0	ID=cds2628;Name=YP_001533971.1;Parent=gene2673;Note=Swiss-Prot: Q7X2C7-Anaerobic magnesium-protoporphyrin IX monomethyl ester %5Boxidative%5D cyclase %28bchE%29 TIGRFAM: magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase PFAM: cobalamin B12-binding domain protein%3B Radical SAM domain protein SMART: Elongator protein 3%2FMiaB%2FNifB;Dbxref=Genbank:YP_001533971.1,GeneID:5713535;gbkey=CDS;product=putative anaerobic magnesium-protoporphyrin IX monomethyl ester %5Boxidative%5D cyclase;protein_id=YP_001533971.1;transl_table=11
NC_009952.1	RefSeq	gene	2794120	2794332	.	-	.	ID=gene2674;Name=Dshi_2638;Dbxref=GeneID:5713536;gbkey=Gene;locus_tag=Dshi_2638
NC_009952.1	RefSeq	CDS	2794120	2794332	.	-	0	ID=cds2629;Name=YP_001533972.1;Parent=gene2674;Dbxref=Genbank:YP_001533972.1,GeneID:5713536;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533972.1;transl_table=11
NC_009952.1	RefSeq	gene	2794515	2797832	.	+	.	ID=gene2675;Name=carB;Dbxref=GeneID:5713537;gbkey=Gene;gene=carB;locus_tag=Dshi_2639
NC_009952.1	RefSeq	CDS	2794515	2797832	.	+	0	ID=cds2630;Name=YP_001533973.1;Parent=gene2675;Note=four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate%3B CarB is responsible for the amidotransferase activity;Dbxref=Genbank:YP_001533973.1,GeneID:5713537;gbkey=CDS;gene=carB;product=carbamoyl phosphate synthase large subunit;protein_id=YP_001533973.1;transl_table=11
NC_009952.1	RefSeq	gene	2797947	2798738	.	-	.	ID=gene2676;Name=Dshi_2640;Dbxref=GeneID:5713538;gbkey=Gene;locus_tag=Dshi_2640
NC_009952.1	RefSeq	CDS	2797947	2798738	.	-	0	ID=cds2631;Name=YP_001533974.1;Parent=gene2676;Dbxref=Genbank:YP_001533974.1,GeneID:5713538;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533974.1;transl_table=11
NC_009952.1	RefSeq	gene	2798852	2799451	.	+	.	ID=gene2677;Name=tdk;Dbxref=GeneID:5713539;gbkey=Gene;gene=tdk;locus_tag=Dshi_2641
NC_009952.1	RefSeq	CDS	2798852	2799451	.	+	0	ID=cds2632;Name=YP_001533975.1;Parent=gene2677;Note=catalyzes the formation of thymidine 5%27-phosphate from thymidine;Dbxref=Genbank:YP_001533975.1,GeneID:5713539;gbkey=CDS;gene=tdk;product=thymidine kinase;protein_id=YP_001533975.1;transl_table=11
NC_009952.1	RefSeq	gene	2799448	2800284	.	-	.	ID=gene2678;Name=tdk;Dbxref=GeneID:5713540;gbkey=Gene;gene=tdk;locus_tag=Dshi_2642
NC_009952.1	RefSeq	CDS	2799448	2800284	.	-	0	ID=cds2633;Name=YP_001533976.1;Parent=gene2678;Dbxref=Genbank:YP_001533976.1,GeneID:5713540;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533976.1;transl_table=11
NC_009952.1	RefSeq	gene	2800367	2801317	.	-	.	ID=gene2679;Name=Dshi_2643;Dbxref=GeneID:5713541;gbkey=Gene;locus_tag=Dshi_2643
NC_009952.1	RefSeq	CDS	2800367	2801317	.	-	0	ID=cds2634;Name=YP_001533977.1;Parent=gene2679;Note=Swiss-Prot: P36234-Glycerate dehydrogenase;Dbxref=Genbank:YP_001533977.1,GeneID:5713541;gbkey=CDS;product=putative glycerate dehydrogenase;protein_id=YP_001533977.1;transl_table=11
NC_009952.1	RefSeq	gene	2801317	2801655	.	-	.	ID=gene2680;Name=Dshi_2644;Dbxref=GeneID:5713542;gbkey=Gene;locus_tag=Dshi_2644
NC_009952.1	RefSeq	CDS	2801317	2801655	.	-	0	ID=cds2635;Name=YP_001533978.1;Parent=gene2680;Note=Swiss-Prot: P37584-Protein csaA TIGRFAM: export-related chaperone CsaA PFAM: t-RNA-binding domain protein;Dbxref=Genbank:YP_001533978.1,GeneID:5713542;gbkey=CDS;product=putative export-like chaperone;protein_id=YP_001533978.1;transl_table=11
NC_009952.1	RefSeq	gene	2801659	2802480	.	-	.	ID=gene2681;Name=proC;Dbxref=GeneID:5713543;gbkey=Gene;gene=proC;locus_tag=Dshi_2645
NC_009952.1	RefSeq	CDS	2801659	2802480	.	-	0	ID=cds2636;Name=YP_001533979.1;Parent=gene2681;Note=catalyzes the formation of L-proline from pyrroline-5-carboxylate;Dbxref=Genbank:YP_001533979.1,GeneID:5713543;gbkey=CDS;gene=proC;product=pyrroline-5-carboxylate reductase;protein_id=YP_001533979.1;transl_table=11
NC_009952.1	RefSeq	gene	2802512	2803042	.	-	.	ID=gene2682;Name=Dshi_2646;Dbxref=GeneID:5713544;gbkey=Gene;locus_tag=Dshi_2646
NC_009952.1	RefSeq	CDS	2802512	2803042	.	-	0	ID=cds2637;Name=YP_001533980.1;Parent=gene2682;Note=PFAM: Protein of unknown function DUF1790 COG5465: Uncharacterized conserved protein;Dbxref=Genbank:YP_001533980.1,GeneID:5713544;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533980.1;transl_table=11
NC_009952.1	RefSeq	gene	2803326	2804246	.	+	.	ID=gene2683;Name=Dshi_2647;Dbxref=GeneID:5713545;gbkey=Gene;locus_tag=Dshi_2647
NC_009952.1	RefSeq	CDS	2803326	2804246	.	+	0	ID=cds2638;Name=YP_001533981.1;Parent=gene2683;Dbxref=Genbank:YP_001533981.1,GeneID:5713545;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533981.1;transl_table=11
NC_009952.1	RefSeq	gene	2804249	2804491	.	-	.	ID=gene2684;Name=Dshi_2648;Dbxref=GeneID:5713546;gbkey=Gene;locus_tag=Dshi_2648
NC_009952.1	RefSeq	CDS	2804249	2804491	.	-	0	ID=cds2639;Name=YP_001533982.1;Parent=gene2684;Note=PFAM: protein of unknown function DUF526 COG2960: Uncharacterized protein conserved in bacteria;Dbxref=Genbank:YP_001533982.1,GeneID:5713546;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533982.1;transl_table=11
NC_009952.1	RefSeq	gene	2804601	2805491	.	+	.	ID=gene2685;Name=lgt;Dbxref=GeneID:5713547;gbkey=Gene;gene=lgt;locus_tag=Dshi_2649
NC_009952.1	RefSeq	CDS	2804601	2805491	.	+	0	ID=cds2640;Name=YP_001533983.1;Parent=gene2685;Note=transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein;Dbxref=Genbank:YP_001533983.1,GeneID:5713547;gbkey=CDS;gene=lgt;product=prolipoprotein diacylglyceryl transferase;protein_id=YP_001533983.1;transl_table=11
NC_009952.1	RefSeq	gene	2805488	2806579	.	+	.	ID=gene2686;Name=lgt;Dbxref=GeneID:5713548;gbkey=Gene;gene=lgt;locus_tag=Dshi_2650
NC_009952.1	RefSeq	CDS	2805488	2806579	.	+	0	ID=cds2641;Name=YP_001533984.1;Parent=gene2686;Note=PFAM: protein of unknown function DUF185 COG1565: Uncharacterized conserved protein;Dbxref=Genbank:YP_001533984.1,GeneID:5713548;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533984.1;transl_table=11
NC_009952.1	RefSeq	gene	2806576	2807334	.	+	.	ID=gene2687;Name=Dshi_2651;Dbxref=GeneID:5713549;gbkey=Gene;locus_tag=Dshi_2651
NC_009952.1	RefSeq	CDS	2806576	2807334	.	+	0	ID=cds2642;Name=YP_001533985.1;Parent=gene2687;Note=PFAM: protein of unknown function DUF152 TIGR00726: conserved hypothetical protein TIGR00726;Dbxref=Genbank:YP_001533985.1,GeneID:5713549;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533985.1;transl_table=11
NC_009952.1	RefSeq	gene	2807834	2808538	.	+	.	ID=gene2688;Name=Dshi_2652;Dbxref=GeneID:5713550;gbkey=Gene;locus_tag=Dshi_2652
NC_009952.1	RefSeq	CDS	2807834	2808538	.	+	0	ID=cds2643;Name=YP_001533986.1;Parent=gene2688;Note=KEGG: sil:SPO0905 hypothetical protein;Dbxref=Genbank:YP_001533986.1,GeneID:5713550;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533986.1;transl_table=11
NC_009952.1	RefSeq	gene	2808558	2809058	.	-	.	ID=gene2689;Name=Dshi_2653;Dbxref=GeneID:5713551;gbkey=Gene;locus_tag=Dshi_2653
NC_009952.1	RefSeq	CDS	2808558	2809058	.	-	0	ID=cds2644;Name=YP_001533987.1;Parent=gene2689;Note=Swiss-Prot: P0ACJ0-Leucine-responsive regulatory protein PFAM: regulatory protein AsnC%2FLrp family KEGG: rsq:Rsph17025_0257 putative transcriptional regulator%2C AsnC family;Dbxref=Genbank:YP_001533987.1,GeneID:5713551;gbkey=CDS;product=putative leucine-responsive regulatory protein;protein_id=YP_001533987.1;transl_table=11
NC_009952.1	RefSeq	gene	2809223	2810221	.	+	.	ID=gene2690;Name=trxB;Dbxref=GeneID:5713552;gbkey=Gene;gene=trxB;locus_tag=Dshi_2654
NC_009952.1	RefSeq	CDS	2809223	2810221	.	+	0	ID=cds2645;Name=YP_001533988.1;Parent=gene2690;Note=Swiss-Prot: P0A9P4-Thioredoxin reductase TIGRFAM: thioredoxin reductase PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase%3B glucose-inhibited division protein A;Dbxref=Genbank:YP_001533988.1,GeneID:5713552;gbkey=CDS;gene=trxB;product=thioredoxin reductase;protein_id=YP_001533988.1;transl_table=11
NC_009952.1	RefSeq	gene	2810268	2811320	.	-	.	ID=gene2691;Name=ccpA;Dbxref=GeneID:5713553;gbkey=Gene;gene=ccpA;locus_tag=Dshi_2655
NC_009952.1	RefSeq	CDS	2810268	2811320	.	-	0	ID=cds2646;Name=YP_001533989.1;Parent=gene2691;Note=Swiss-Prot: P14532-Cytochrome c551 peroxidase %5BPrecursor%5D PFAM: Di-haem cytochrome c peroxidase KEGG: sil:SPO0330 cytochrome c peroxidase COG1858: Cytochrome c peroxidase;Dbxref=Genbank:YP_001533989.1,GeneID:5713553;gbkey=CDS;gene=ccpA;product=cytochrome-c peroxidase;protein_id=YP_001533989.1;transl_table=11
NC_009952.1	RefSeq	gene	2811577	2813652	.	+	.	ID=gene2692;Name=Dshi_2656;Dbxref=GeneID:5713554;gbkey=Gene;locus_tag=Dshi_2656
NC_009952.1	RefSeq	CDS	2811577	2813652	.	+	0	ID=cds2647;Name=YP_001533990.1;Parent=gene2692;Note=in Rhizobium meliloti this protein is involved in the synthesis of nodulation factors that are active on the roots of alfalfa%3B catalyzes formation of activated sulfate intermediate%3B converts ATP and sulfate to diphosphate and adenylylsulfate and then ATP and adenylyl sulfate to ADP and 3%27-phosphoadenylyl sulfate%3B the activated intermediate is transferred to the nodulation factors by NodH%3B may interact with NodP and NodQ%3B similar to the CysD and CysN proteins from Escherichia coli involved in cysteine biosynthesis;Dbxref=Genbank:YP_001533990.1,GeneID:5713554;gbkey=CDS;product=bifunctional sulfate adenylyltransferase subunit 1%2Fadenylylsulfate kinase;protein_id=YP_001533990.1;transl_table=11
NC_009952.1	RefSeq	gene	2813746	2814336	.	-	.	ID=gene2693;Name=Dshi_2657;Dbxref=GeneID:5713555;gbkey=Gene;locus_tag=Dshi_2657
NC_009952.1	RefSeq	CDS	2813746	2814336	.	-	0	ID=cds2648;Name=YP_001533991.1;Parent=gene2693;Dbxref=Genbank:YP_001533991.1,GeneID:5713555;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533991.1;transl_table=11
NC_009952.1	RefSeq	gene	2814514	2815302	.	-	.	ID=gene2694;Name=Dshi_2658;Dbxref=GeneID:5713556;gbkey=Gene;locus_tag=Dshi_2658
NC_009952.1	RefSeq	CDS	2814514	2815302	.	-	0	ID=cds2649;Name=YP_001533992.1;Parent=gene2694;Note=Swiss-Prot: P19920-Carbon monoxide dehydrogenase medium chain coxM%3B PFAM: molybdopterin dehydrogenase FAD-binding COG1319: Aerobic-type carbon monoxide dehydrogenase%2C middle subunit CoxM%2FCutM homologs%3B medium chain;Dbxref=Genbank:YP_001533992.1,GeneID:5713556;gbkey=CDS;product=putative carbon monoxide dehydrogenase;protein_id=YP_001533992.1;transl_table=11
NC_009952.1	RefSeq	gene	2815351	2817726	.	-	.	ID=gene2695;Name=coxL1;Dbxref=GeneID:5713557;gbkey=Gene;gene=coxL1;locus_tag=Dshi_2659
NC_009952.1	RefSeq	CDS	2815351	2817726	.	-	0	ID=cds2650;Name=YP_001533993.1;Parent=gene2695;Note=Swiss-Prot: P19919-Carbon monoxide dehydrogenase large chain coxL TIGR02416: carbon-monoxide dehydrogenase%2C large subunit PFAM: aldehyde oxidase and xanthine dehydrogenase a%2Fb hammerhead%3B aldehyde oxidase and xanthine dehydrogenase molybdopterin binding COG1529: Aerobic-type carbon monoxide dehydrogenase%2C large subunit CoxL%2FCutL homologs;Dbxref=Genbank:YP_001533993.1,GeneID:5713557;gbkey=CDS;gene=coxL1;product=carbon monoxide dehydrogenase;protein_id=YP_001533993.1;transl_table=11
NC_009952.1	RefSeq	gene	2817800	2818288	.	-	.	ID=gene2696;Name=Dshi_2660;Dbxref=GeneID:5713558;gbkey=Gene;locus_tag=Dshi_2660
NC_009952.1	RefSeq	CDS	2817800	2818288	.	-	0	ID=cds2651;Name=YP_001533994.1;Parent=gene2696;Note=Swiss-Prot: P19921-Carbon monoxide dehydrogenase small chain coxS PFAM: ferredoxin%3B %5B2Fe-2S%5D-binding domain protein COG2080: Aerobic-type carbon monoxide dehydrogenase%2C small subunit CoxS%2FCutS homologs%3B small chain;Dbxref=Genbank:YP_001533994.1,GeneID:5713558;gbkey=CDS;product=putative carbon monoxide dehydrogenase;protein_id=YP_001533994.1;transl_table=11
NC_009952.1	RefSeq	gene	2818337	2818867	.	-	.	ID=gene2697;Name=Dshi_2661;Dbxref=GeneID:5713559;gbkey=Gene;locus_tag=Dshi_2661
NC_009952.1	RefSeq	CDS	2818337	2818867	.	-	0	ID=cds2652;Name=YP_001533995.1;Parent=gene2697;Note=PFAM: carbon monoxide dehydrogenase subunit G COG3427: Uncharacterized conserved protein%3B subunit G;Dbxref=Genbank:YP_001533995.1,GeneID:5713559;gbkey=CDS;product=putative carbon monoxide dehydrogenase;protein_id=YP_001533995.1;transl_table=11
NC_009952.1	RefSeq	gene	2818944	2819846	.	-	.	ID=gene2698;Name=Dshi_2662;Dbxref=GeneID:5713560;gbkey=Gene;locus_tag=Dshi_2662
NC_009952.1	RefSeq	CDS	2818944	2819846	.	-	0	ID=cds2653;Name=YP_001533996.1;Parent=gene2698;Note=PFAM: Bacterial extracellular solute-binding proteins%2C family 3 SMART: extracellular solute-binding protein family%3B similar to extracellular solute-binding protein %28family 3%29;Dbxref=Genbank:YP_001533996.1,GeneID:5713560;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533996.1;transl_table=11
NC_009952.1	RefSeq	gene	2819920	2820594	.	-	.	ID=gene2699;Name=Dshi_2663;Dbxref=GeneID:5713561;gbkey=Gene;locus_tag=Dshi_2663
NC_009952.1	RefSeq	CDS	2819920	2820594	.	-	0	ID=cds2654;Name=YP_001533997.1;Parent=gene2699;Note=PS51007: CYTC SSF46626: Cytochrome_c KEGG: sil:SPO1515 cytochrome c550%2C putative%3B related to cytochrome c;Dbxref=Genbank:YP_001533997.1,GeneID:5713561;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533997.1;transl_table=11
NC_009952.1	RefSeq	gene	2820907	2822067	.	+	.	ID=gene2700;Name=Dshi_2664;Dbxref=GeneID:5713562;gbkey=Gene;locus_tag=Dshi_2664
NC_009952.1	RefSeq	CDS	2820907	2822067	.	+	0	ID=cds2655;Name=YP_001533998.1;Parent=gene2700;Note=KEGG: sil:SPO1514 hypothetical protein;Dbxref=Genbank:YP_001533998.1,GeneID:5713562;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533998.1;transl_table=11
NC_009952.1	RefSeq	gene	2822130	2823107	.	+	.	ID=gene2701;Name=Dshi_2665;Dbxref=GeneID:5713563;gbkey=Gene;locus_tag=Dshi_2665
NC_009952.1	RefSeq	CDS	2822130	2823107	.	+	0	ID=cds2656;Name=YP_001533999.1;Parent=gene2701;Note=TIGRFAM: 40-residue YVTN family beta-propeller repeat protein KEGG: sil:SPO1513 hypothetical protein;Dbxref=Genbank:YP_001533999.1,GeneID:5713563;gbkey=CDS;product=hypothetical protein;protein_id=YP_001533999.1;transl_table=11
NC_009952.1	RefSeq	gene	2823214	2823660	.	+	.	ID=gene2702;Name=Dshi_2666;Dbxref=GeneID:5713564;gbkey=Gene;locus_tag=Dshi_2666
NC_009952.1	RefSeq	CDS	2823214	2823660	.	+	0	ID=cds2657;Name=YP_001534000.1;Parent=gene2702;Dbxref=Genbank:YP_001534000.1,GeneID:5713564;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534000.1;transl_table=11
NC_009952.1	RefSeq	gene	2823667	2824386	.	+	.	ID=gene2703;Name=Dshi_2667;Dbxref=GeneID:5713565;gbkey=Gene;locus_tag=Dshi_2667
NC_009952.1	RefSeq	CDS	2823667	2824386	.	+	0	ID=cds2658;Name=YP_001534001.1;Parent=gene2703;Note=Swiss-Prot: P0A9U1-Uncharacterized ABC transporter ATP-binding protein ybhF PFAM: ABC transporter related SMART: AAA ATPase%3B ATP-binding protein;Dbxref=Genbank:YP_001534001.1,GeneID:5713565;gbkey=CDS;product=ABC transporter;protein_id=YP_001534001.1;transl_table=11
NC_009952.1	RefSeq	gene	2824868	2825659	.	+	.	ID=gene2704;Name=Dshi_2668;Dbxref=GeneID:5713566;gbkey=Gene;locus_tag=Dshi_2668
NC_009952.1	RefSeq	CDS	2824868	2825659	.	+	0	ID=cds2659;Name=YP_001534002.1;Parent=gene2704;Note=PFAM: ABC-2 type transporter Swiss-Prot: P0AFP9-Inner membrane transport permease ybhR KEGG: sil:SPO1510 efflux ABC transporter%2C permease protein%3B permease component;Dbxref=Genbank:YP_001534002.1,GeneID:5713566;gbkey=CDS;product=putative ABC-2 type transporter;protein_id=YP_001534002.1;transl_table=11
NC_009952.1	RefSeq	gene	2825706	2826251	.	+	.	ID=gene2705;Name=Dshi_2669;Dbxref=GeneID:5713567;gbkey=Gene;locus_tag=Dshi_2669
NC_009952.1	RefSeq	CDS	2825706	2826251	.	+	0	ID=cds2660;Name=YP_001534003.1;Parent=gene2705;Dbxref=Genbank:YP_001534003.1,GeneID:5713567;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534003.1;transl_table=11
NC_009952.1	RefSeq	gene	2826191	2826901	.	-	.	ID=gene2706;Name=Dshi_2670;Dbxref=GeneID:5713568;gbkey=Gene;locus_tag=Dshi_2670
NC_009952.1	RefSeq	CDS	2826191	2826901	.	-	0	ID=cds2661;Name=YP_001534004.1;Parent=gene2706;Note=PFAM: ABC transporter related SMART: AAA ATPase Swiss-Prot: Q47538-Taurine import ATP-binding protein tauB %2F P0AAI1-Aliphatic sulfonates import ATP-binding protein ssuB%3B COG1116: ABC-type nitrate%2Fsulfonate%2Fbicarbonate transport system%2C ATPase component%3B ATP-binding protein;Dbxref=Genbank:YP_001534004.1,GeneID:5713568;gbkey=CDS;product=ABC transporter;protein_id=YP_001534004.1;transl_table=11
NC_009952.1	RefSeq	gene	2826918	2827889	.	-	.	ID=gene2707;Name=Dshi_2671;Dbxref=GeneID:5713569;gbkey=Gene;locus_tag=Dshi_2671
NC_009952.1	RefSeq	CDS	2826918	2827889	.	-	0	ID=cds2662;Name=YP_001534005.1;Parent=gene2707;Note=SSF53850: Periplasmic binding protein-like II COG0715: ABC-type nitrate%2Fsulfonate%2Fbicarbonate transport systems%2C periplasmic components%3B similar to periplasmic binding protein;Dbxref=Genbank:YP_001534005.1,GeneID:5713569;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534005.1;transl_table=11
NC_009952.1	RefSeq	gene	2828064	2828483	.	+	.	ID=gene2708;Name=Dshi_2672;Dbxref=GeneID:5713570;gbkey=Gene;locus_tag=Dshi_2672
NC_009952.1	RefSeq	CDS	2828064	2828483	.	+	0	ID=cds2663;Name=YP_001534006.1;Parent=gene2708;Note=PFAM: cytochrome c class I KEGG: sil:SPO1509 cytochrome c family protein%3B cytochrome c class I;Dbxref=Genbank:YP_001534006.1,GeneID:5713570;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534006.1;transl_table=11
NC_009952.1	RefSeq	gene	2828781	2830547	.	+	.	ID=gene2709;Name=exaA;Dbxref=GeneID:5713571;gbkey=Gene;gene=exaA;locus_tag=Dshi_2673
NC_009952.1	RefSeq	CDS	2828781	2830547	.	+	0	ID=cds2664;Name=YP_001534007.1;Parent=gene2709;Note=Swiss-Prot: Q9Z4J7-Quinoprotein ethanol dehydrogenase %5BPrecursor%5D PFAM: Pyrrolo-quinoline quinone SSF50998: Quinonprotein alcohol dehydrogenase-like KEGG: sil:SPO1508 quinoprotein ethanol dehydrogenase;Dbxref=Genbank:YP_001534007.1,GeneID:5713571;gbkey=CDS;gene=exaA;product=quinoprotein ethanol dehydrogenase;protein_id=YP_001534007.1;transl_table=11
NC_009952.1	RefSeq	gene	2830905	2831591	.	+	.	ID=gene2710;Name=Dshi_2674;Dbxref=GeneID:5713572;gbkey=Gene;locus_tag=Dshi_2674
NC_009952.1	RefSeq	CDS	2830905	2831591	.	+	0	ID=cds2665;Name=YP_001534008.1;Parent=gene2710;Note=PFAM: regulatory protein LuxR%3B response regulator receiver KEGG: rsp:RSP_2882 two component transcriptional regulator%2C LuxR family Swiss-Prot: P0AF28-Nitrate%2Fnitrite response regulator protein narL%3B LuxR family;Dbxref=Genbank:YP_001534008.1,GeneID:5713572;gbkey=CDS;product=two component transcriptional regulator;protein_id=YP_001534008.1;transl_table=11
NC_009952.1	RefSeq	gene	2831646	2832845	.	+	.	ID=gene2711;Name=Dshi_2675;Dbxref=GeneID:5713573;gbkey=Gene;locus_tag=Dshi_2675
NC_009952.1	RefSeq	CDS	2831646	2832845	.	+	0	ID=cds2666;Name=YP_001534009.1;Parent=gene2711;Note=PFAM: domain of unknown function DUF1745 COG3287- Uncharacterized conserved protein;Dbxref=Genbank:YP_001534009.1,GeneID:5713573;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534009.1;transl_table=11
NC_009952.1	RefSeq	gene	2832817	2834847	.	+	.	ID=gene2712;Name=Dshi_2676;Dbxref=GeneID:5713574;gbkey=Gene;locus_tag=Dshi_2676
NC_009952.1	RefSeq	CDS	2832817	2834847	.	+	0	ID=cds2667;Name=YP_001534010.1;Parent=gene2712;Note=PFAM: response regulator receiver%3B ATP-binding region ATPase domain protein%3B histidine kinase A domain protein;Dbxref=Genbank:YP_001534010.1,GeneID:5713574;gbkey=CDS;product=histidine kinase;protein_id=YP_001534010.1;transl_table=11
NC_009952.1	RefSeq	gene	2834844	2835545	.	-	.	ID=gene2713;Name=Dshi_2677;Dbxref=GeneID:5713575;gbkey=Gene;locus_tag=Dshi_2677
NC_009952.1	RefSeq	CDS	2834844	2835545	.	-	0	ID=cds2668;Name=YP_001534011.1;Parent=gene2713;Note=PFAM: lipolytic protein G-D-S-L family%3B G-D-S-L family;Dbxref=Genbank:YP_001534011.1,GeneID:5713575;gbkey=CDS;product=lipolytic protein;protein_id=YP_001534011.1;transl_table=11
NC_009952.1	RefSeq	gene	2835568	2836272	.	+	.	ID=gene2714;Name=Dshi_2678;Dbxref=GeneID:5713576;gbkey=Gene;locus_tag=Dshi_2678
NC_009952.1	RefSeq	CDS	2835568	2836272	.	+	0	ID=cds2669;Name=YP_001534012.1;Parent=gene2714;Note=Swiss-Prot: P0A9T8-Uncharacterized ABC transporter ATP-binding protein ybbA PFAM: ABC transporter related SMART: AAA ATPase%3B ATP-binding protein;Dbxref=Genbank:YP_001534012.1,GeneID:5713576;gbkey=CDS;product=ABC transporter;protein_id=YP_001534012.1;transl_table=11
NC_009952.1	RefSeq	gene	2836269	2838797	.	+	.	ID=gene2715;Name=Dshi_2679;Dbxref=GeneID:5713577;gbkey=Gene;locus_tag=Dshi_2679
NC_009952.1	RefSeq	CDS	2836269	2838797	.	+	0	ID=cds2670;Name=YP_001534013.1;Parent=gene2715;Note=PFAM: protein of unknown function DUF214 COG3127: Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis%2C permease component Swiss-Prot: P77504-Uncharacterized ABC transporter permease ybbP;Dbxref=Genbank:YP_001534013.1,GeneID:5713577;gbkey=CDS;product=putative ABC transporter permease;protein_id=YP_001534013.1;transl_table=11
NC_009952.1	RefSeq	gene	2839208	2842072	.	-	.	ID=gene2716;Name=gcvP;Dbxref=GeneID:5713578;gbkey=Gene;gene=gcvP;locus_tag=Dshi_2680
NC_009952.1	RefSeq	CDS	2839208	2842072	.	-	0	ID=cds2671;Name=YP_001534014.1;Parent=gene2716;Note=acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine;Dbxref=Genbank:YP_001534014.1,GeneID:5713578;gbkey=CDS;gene=gcvP;product=glycine dehydrogenase;protein_id=YP_001534014.1;transl_table=11
NC_009952.1	RefSeq	gene	2842164	2842532	.	-	.	ID=gene2717;Name=gcvH;Dbxref=GeneID:5713579;gbkey=Gene;gene=gcvH;locus_tag=Dshi_2681
NC_009952.1	RefSeq	CDS	2842164	2842532	.	-	0	ID=cds2672;Name=YP_001534015.1;Parent=gene2717;Note=part of multienzyme complex composed of H%2C L%2C P%2C and T proteins which catalyzes oxidation of glycine to yield carbon dioxide%2C ammonia%2C 5%2C10-CH2-H4folate and a reduced pyridine nucleotide%3B protein H is involved in transfer of methylamine group from the P to T protein%3B covalently bound to a lipoyl cofactor;Dbxref=Genbank:YP_001534015.1,GeneID:5713579;gbkey=CDS;gene=gcvH;product=glycine cleavage system protein H;protein_id=YP_001534015.1;transl_table=11
NC_009952.1	RefSeq	gene	2842546	2843631	.	-	.	ID=gene2718;Name=gcvT2;Dbxref=GeneID:5713580;gbkey=Gene;gene=gcvT2;locus_tag=Dshi_2682
NC_009952.1	RefSeq	CDS	2842546	2843631	.	-	0	ID=cds2673;Name=YP_001534016.1;Parent=gene2718;Note=Swiss-Prot: P54378-Aminomethyltransferase TIGRFAM: glycine cleavage system T protein PFAM: glycine cleavage T protein %28aminomethyl transferase%29%3B Glycine cleavage T-protein barrel;Dbxref=Genbank:YP_001534016.1,GeneID:5713580;gbkey=CDS;gene=gcvT2;product=aminomethyltransferase%2C glycine cleavage system T protein;protein_id=YP_001534016.1;transl_table=11
NC_009952.1	RefSeq	gene	2843824	2844828	.	+	.	ID=gene2719;Name=mro;Dbxref=GeneID:5713581;gbkey=Gene;gene=mro;locus_tag=Dshi_2683
NC_009952.1	RefSeq	CDS	2843824	2844828	.	+	0	ID=cds2674;Name=YP_001534017.1;Parent=gene2719;Note=Swiss-Prot: P05149-aldose 1-epimerase %5BPrecursor%5D PFAM: Aldose 1-epimerase;Dbxref=Genbank:YP_001534017.1,GeneID:5713581;gbkey=CDS;gene=mro;product=aldose 1-epimerase;protein_id=YP_001534017.1;transl_table=11
NC_009952.1	RefSeq	gene	2844910	2845275	.	-	.	ID=gene2720;Name=Dshi_2684;Dbxref=GeneID:5713582;gbkey=Gene;locus_tag=Dshi_2684
NC_009952.1	RefSeq	CDS	2844910	2845275	.	-	0	ID=cds2675;Name=YP_001534018.1;Parent=gene2720;Note=Swiss-Prot: Q92UG5-Putative transthyretin-like protein RB1166 TIGRFAM: Hydroxyisourate hydrolase PFAM: Transthyretin;Dbxref=Genbank:YP_001534018.1,GeneID:5713582;gbkey=CDS;product=putative transthyretin-like protein;protein_id=YP_001534018.1;transl_table=11
NC_009952.1	RefSeq	gene	2845670	2846659	.	-	.	ID=gene2721;Name=gap3;Dbxref=GeneID:5713583;gbkey=Gene;gene=gap3;locus_tag=Dshi_2685
NC_009952.1	RefSeq	CDS	2845670	2846659	.	-	0	ID=cds2676;Name=YP_001534019.1;Parent=gene2721;Note=Swiss-Prot: P09124-Glyceraldehyde-3-phosphate dehydrogenase 1 PFAM: glyceraldehyde 3-phosphate dehydrogenase TIGR01534 glyceraldehyde-3-phosphate dehydrogenase%2C type I%3B phosphorylating;Dbxref=Genbank:YP_001534019.1,GeneID:5713583;gbkey=CDS;gene=gap3;product=glyceraldehyde-3-phosphate dehydrogenase;protein_id=YP_001534019.1;transl_table=11
NC_009952.1	RefSeq	gene	2846962	2847378	.	+	.	ID=gene2722;Name=Dshi_2686;Dbxref=GeneID:5713584;gbkey=Gene;locus_tag=Dshi_2686
NC_009952.1	RefSeq	CDS	2846962	2847378	.	+	0	ID=cds2677;Name=YP_001534020.1;Parent=gene2722;Note=Swiss-Prot: P37903-Universal stress protein F PFAM: UspA domain protein KEGG: sit:TM1040_2126 UspA;Dbxref=Genbank:YP_001534020.1,GeneID:5713584;gbkey=CDS;product=universal stress protein;protein_id=YP_001534020.1;transl_table=11
NC_009952.1	RefSeq	gene	2847605	2848090	.	+	.	ID=gene2723;Name=Dshi_2687;Dbxref=GeneID:5713585;gbkey=Gene;locus_tag=Dshi_2687
NC_009952.1	RefSeq	CDS	2847605	2848090	.	+	0	ID=cds2678;Name=YP_001534021.1;Parent=gene2723;Note=Swiss-Prot: P19567-Pseudoazurin %5BPrecursor%5D TIGR02375%23 pseudoazurin;Dbxref=Genbank:YP_001534021.1,GeneID:5713585;gbkey=CDS;product=putative pseudoazurin;protein_id=YP_001534021.1;transl_table=11
NC_009952.1	RefSeq	gene	2848368	2849762	.	+	.	ID=gene2724;Name=appC;Dbxref=GeneID:5713586;gbkey=Gene;gene=appC;locus_tag=Dshi_2688
NC_009952.1	RefSeq	CDS	2848368	2849762	.	+	0	ID=cds2679;Name=YP_001534022.1;Parent=gene2724;Note=Swiss-Prot: P26459-Cytochrome bd-II oxidase subunit 1 PFAM: cytochrome bd ubiquinol oxidase subunit I;Dbxref=Genbank:YP_001534022.1,GeneID:5713586;gbkey=CDS;gene=appC;product=cytochrome bd-II oxidase subunit 1;protein_id=YP_001534022.1;transl_table=11
NC_009952.1	RefSeq	gene	2849767	2850780	.	+	.	ID=gene2725;Name=cydB;Dbxref=GeneID:5713587;gbkey=Gene;gene=cydB;locus_tag=Dshi_2689
NC_009952.1	RefSeq	CDS	2849767	2850780	.	+	0	ID=cds2680;Name=YP_001534023.1;Parent=gene2725;Note=Swiss-Prot: P0ABK2-Cytochrome d ubiquinol oxidase subunit 2 TIGR00203: cytochrome d oxidase%2C subunit II %28cydB%29 PFAM: cytochrome bd ubiquinol oxidase subunit II;Dbxref=Genbank:YP_001534023.1,GeneID:5713587;gbkey=CDS;gene=cydB;product=cytochrome bd-I oxidase subunit II;protein_id=YP_001534023.1;transl_table=11
NC_009952.1	RefSeq	gene	2850801	2851355	.	-	.	ID=gene2726;Name=Dshi_2690;Dbxref=GeneID:5713588;gbkey=Gene;locus_tag=Dshi_2690
NC_009952.1	RefSeq	CDS	2850801	2851355	.	-	0	ID=cds2681;Name=YP_001534024.1;Parent=gene2726;Note=KEGG: jan:Jann_3427 hypothetical protein;Dbxref=Genbank:YP_001534024.1,GeneID:5713588;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534024.1;transl_table=11
NC_009952.1	RefSeq	gene	2851499	2852269	.	+	.	ID=gene2727;Name=Dshi_2691;Dbxref=GeneID:5713589;gbkey=Gene;locus_tag=Dshi_2691
NC_009952.1	RefSeq	CDS	2851499	2852269	.	+	0	ID=cds2682;Name=YP_001534025.1;Parent=gene2727;Note=Swiss-Prot: P0AC84-Probable hydroxyacylglutathione hydrolase %28 Glyoxalase II%29 PFAM: beta-lactamase domain protein KEGG: mlo:mlr3546 putative glyoxalase II;Dbxref=Genbank:YP_001534025.1,GeneID:5713589;gbkey=CDS;product=putative hydroxyacylglutathione hydrolase;protein_id=YP_001534025.1;transl_table=11
NC_009952.1	RefSeq	gene	2852282	2853010	.	-	.	ID=gene2728;Name=Dshi_2692;Dbxref=GeneID:5713590;gbkey=Gene;locus_tag=Dshi_2692
NC_009952.1	RefSeq	CDS	2852282	2853010	.	-	0	ID=cds2683;Name=YP_001534026.1;Parent=gene2728;Note=PFAM: protein of unknown function DUF1194;Dbxref=Genbank:YP_001534026.1,GeneID:5713590;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534026.1;transl_table=11
NC_009952.1	RefSeq	gene	2853046	2853459	.	-	.	ID=gene2729;Name=Dshi_2693;Dbxref=GeneID:5713591;gbkey=Gene;locus_tag=Dshi_2693
NC_009952.1	RefSeq	CDS	2853046	2853459	.	-	0	ID=cds2684;Name=YP_001534027.1;Parent=gene2729;Note=PFAM: protein of unknown function DUF606 COG3238: Uncharacterized protein conserved in bacteria;Dbxref=Genbank:YP_001534027.1,GeneID:5713591;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534027.1;transl_table=11
NC_009952.1	RefSeq	gene	2853623	2854024	.	+	.	ID=gene2730;Name=Dshi_2694;Dbxref=GeneID:5713592;gbkey=Gene;locus_tag=Dshi_2694
NC_009952.1	RefSeq	CDS	2853623	2854024	.	+	0	ID=cds2685;Name=YP_001534028.1;Parent=gene2730;Note=SSF46626: Cytochrome c superfamily PS51007: CYTC %28Cytochrome c family profile%29;Dbxref=Genbank:YP_001534028.1,GeneID:5713592;gbkey=CDS;product=putative cytochrome c family protein;protein_id=YP_001534028.1;transl_table=11
NC_009952.1	RefSeq	gene	2854072	2854148	.	-	.	ID=gene2731;Name=Dshi_6046;Dbxref=GeneID:5713593;gbkey=Gene;locus_tag=Dshi_6046
NC_009952.1	RefSeq	tRNA	2854072	2854148	.	-	.	ID=rna45;Parent=gene2731;Dbxref=GeneID:5713593;codons=35;gbkey=tRNA;product=tRNA-Met
NC_009952.1	RefSeq	exon	2854072	2854148	.	-	.	ID=id51;Parent=rna45;Dbxref=GeneID:5713593;codons=35;gbkey=tRNA;product=tRNA-Met
NC_009952.1	RefSeq	gene	2854595	2855953	.	+	.	ID=gene2732;Name=Dshi_2695;Dbxref=GeneID:5713594;gbkey=Gene;locus_tag=Dshi_2695
NC_009952.1	RefSeq	CDS	2854595	2855953	.	+	0	ID=cds2686;Name=YP_001534029.1;Parent=gene2732;Note=Swiss-Prot: P27017-Aliphatic amidase expression-regulating protein amiC COG0683: ABC-type branched-chain amino acid transport systems%2C periplasmic component SSF53822: Periplasmic binding protein-like I superfamily;Dbxref=Genbank:YP_001534029.1,GeneID:5713594;gbkey=CDS;product=putative aliphatic amidase expression-regulating protein;protein_id=YP_001534029.1;transl_table=11
NC_009952.1	RefSeq	gene	2856015	2857679	.	+	.	ID=gene2733;Name=Dshi_2696;Dbxref=GeneID:5713595;gbkey=Gene;locus_tag=Dshi_2696
NC_009952.1	RefSeq	CDS	2856015	2857679	.	+	0	ID=cds2687;Name=YP_001534030.1;Parent=gene2733;Note=Swiss-Prot: P0AEX7-High-affinity branched-chain amino acid transport system permease protein livH PFAM: inner-membrane translocator SMART: PBS lyase HEAT domain protein repeat-containing protein;Dbxref=Genbank:YP_001534030.1,GeneID:5713595;gbkey=CDS;product=inner-membrane translocator;protein_id=YP_001534030.1;transl_table=11
NC_009952.1	RefSeq	gene	2857981	2859084	.	+	.	ID=gene2734;Name=Dshi_2697;Dbxref=GeneID:5713596;gbkey=Gene;locus_tag=Dshi_2697
NC_009952.1	RefSeq	CDS	2857981	2859084	.	+	0	ID=cds2688;Name=YP_001534031.1;Parent=gene2734;Note=Swiss-Prot: P22729-High-affinity branched-chain amino acid transport system permease protein livM PFAM: inner-membrane translocator%3B permease protein;Dbxref=Genbank:YP_001534031.1,GeneID:5713596;gbkey=CDS;product=putative high-affinity branched-chain amino acid transport system;protein_id=YP_001534031.1;transl_table=11
NC_009952.1	RefSeq	gene	2859081	2859818	.	+	.	ID=gene2735;Name=Dshi_2698;Dbxref=GeneID:5713597;gbkey=Gene;locus_tag=Dshi_2698
NC_009952.1	RefSeq	CDS	2859081	2859818	.	+	0	ID=cds2689;Name=YP_001534032.1;Parent=gene2735;Note=Swiss-Prot: P0A9S7-High-affinity branched-chain amino acid transport ATP-binding protein livG PFAM: ABC transporter related SMART: AAA ATPase COG4674: Uncharacterized ABC-type transport system%2C ATPase component;Dbxref=Genbank:YP_001534032.1,GeneID:5713597;gbkey=CDS;product=putative high-affinity branched-chain amino acid transport ATP-binding protein;protein_id=YP_001534032.1;transl_table=11
NC_009952.1	RefSeq	gene	2859820	2860515	.	+	.	ID=gene2736;Name=Dshi_2699;Dbxref=GeneID:5713598;gbkey=Gene;locus_tag=Dshi_2699
NC_009952.1	RefSeq	CDS	2859820	2860515	.	+	0	ID=cds2690;Name=YP_001534033.1;Parent=gene2736;Note=Swiss-Prot: P22731-High-affinity branched-chain amino acid transport ATP-binding protein livF PFAM: ABC transporter related SMART: AAA ATPase COG0410: ABC-type branched-chain amino acid transport systems%2C ATPase component;Dbxref=Genbank:YP_001534033.1,GeneID:5713598;gbkey=CDS;product=putative high-affinity branched-chain amino acid transport ATP-binding protein;protein_id=YP_001534033.1;transl_table=11
NC_009952.1	RefSeq	gene	2860992	2861681	.	+	.	ID=gene2737;Name=dhlB;Dbxref=GeneID:5713599;gbkey=Gene;gene=dhlB;locus_tag=Dshi_2700
NC_009952.1	RefSeq	CDS	2860992	2861681	.	+	0	ID=cds2691;Name=YP_001534034.1;Parent=gene2737;Note=Swiss-Prot: Q60099-%28S%29-2-haloacid dehalogenase TIGRFAM: haloacid dehalogenase%2C type II%3B HAD-superfamily hydrolase%2C subfamily IA%2C variant 2 %28HAD-like%29 PFAM: Haloacid dehalogenase domain protein hydrolase;Dbxref=Genbank:YP_001534034.1,GeneID:5713599;gbkey=CDS;gene=dhlB;product=%28S%29-2-haloacid dehalogenase;protein_id=YP_001534034.1;transl_table=11
NC_009952.1	RefSeq	gene	2861681	2862505	.	+	.	ID=gene2738;Name=dhlB;Dbxref=GeneID:5713600;gbkey=Gene;gene=dhlB;locus_tag=Dshi_2701
NC_009952.1	RefSeq	CDS	2861681	2862505	.	+	0	ID=cds2692;Name=YP_001534035.1;Parent=gene2738;Note=PFAM: alpha%2Fbeta hydrolase fold KEGG: rsh:Rsph17029_0927 alpha%2Fbeta hydrolase fold%3B alpha%2Fbeta hydrolase superfamily;Dbxref=Genbank:YP_001534035.1,GeneID:5713600;gbkey=CDS;product=putative hydrolase %2F acyltransferase;protein_id=YP_001534035.1;transl_table=11
NC_009952.1	RefSeq	gene	2862502	2863494	.	+	.	ID=gene2739;Name=Dshi_2702;Dbxref=GeneID:5713601;gbkey=Gene;locus_tag=Dshi_2702
NC_009952.1	RefSeq	CDS	2862502	2863494	.	+	0	ID=cds2693;Name=YP_001534036.1;Parent=gene2739;Note=Swiss-Prot: P0AGF6-Threonine dehydratase catabolic tdcB PFAM: Pyridoxal-5-phosphate-dependent protein beta subunit%3B catabolic;Dbxref=Genbank:YP_001534036.1,GeneID:5713601;gbkey=CDS;product=putative threonine dehydratase;protein_id=YP_001534036.1;transl_table=11
NC_009952.1	RefSeq	gene	2863568	2863975	.	-	.	ID=gene2740;Name=Dshi_2703;Dbxref=GeneID:5713602;gbkey=Gene;locus_tag=Dshi_2703
NC_009952.1	RefSeq	CDS	2863568	2863975	.	-	0	ID=cds2694;Name=YP_001534037.1;Parent=gene2740;Note=KEGG: rde:RD1_0908 hypothetical protein;Dbxref=Genbank:YP_001534037.1,GeneID:5713602;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534037.1;transl_table=11
NC_009952.1	RefSeq	gene	2864136	2865179	.	-	.	ID=gene2741;Name=hemC;Dbxref=GeneID:5713603;gbkey=Gene;gene=hemC;locus_tag=Dshi_2704
NC_009952.1	RefSeq	CDS	2864136	2865179	.	-	0	ID=cds2695;Name=YP_001534038.1;Parent=gene2741;Note=transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis;Dbxref=Genbank:YP_001534038.1,GeneID:5713603;gbkey=CDS;gene=hemC;product=porphobilinogen deaminase;protein_id=YP_001534038.1;transl_table=11
NC_009952.1	RefSeq	gene	2865197	2866231	.	+	.	ID=gene2742;Name=hemE;Dbxref=GeneID:5713604;gbkey=Gene;gene=hemE;locus_tag=Dshi_2705
NC_009952.1	RefSeq	CDS	2865197	2866231	.	+	0	ID=cds2696;Name=YP_001534039.1;Parent=gene2742;Note=catalyzes the formation of coproporphyrinogen from uroporphyrinogen III;Dbxref=Genbank:YP_001534039.1,GeneID:5713604;gbkey=CDS;gene=hemE;product=uroporphyrinogen decarboxylase;protein_id=YP_001534039.1;transl_table=11
NC_009952.1	RefSeq	gene	2866405	2867619	.	+	.	ID=gene2743;Name=Dshi_2706;Dbxref=GeneID:5713605;gbkey=Gene;locus_tag=Dshi_2706
NC_009952.1	RefSeq	CDS	2866405	2867619	.	+	0	ID=cds2697;Name=YP_001534040.1;Parent=gene2743;Note=Swiss-Prot: P21503-Uncharacterized MFS-type transporter ycaD PFAM: major facilitator superfamily MFS_1;Dbxref=Genbank:YP_001534040.1,GeneID:5713605;gbkey=CDS;product=putative major facilitator superfamily transporter;protein_id=YP_001534040.1;transl_table=11
NC_009952.1	RefSeq	gene	2867674	2869392	.	+	.	ID=gene2744;Name=metG;Dbxref=GeneID:5713606;gbkey=Gene;gene=metG;locus_tag=Dshi_2707
NC_009952.1	RefSeq	CDS	2867674	2869392	.	+	0	ID=cds2698;Name=YP_001534041.1;Parent=gene2744;Note=methionine--tRNA ligase%3B MetRS%3B adds methionine to tRNA%28Met%29 with cleavage of ATP to AMP and diphosphate%3B some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not%3B four subfamilies exist based on sequence motifs and zinc content;Dbxref=Genbank:YP_001534041.1,GeneID:5713606;gbkey=CDS;gene=metG;product=methionyl-tRNA synthetase;protein_id=YP_001534041.1;transl_table=11
NC_009952.1	RefSeq	gene	2869501	2871093	.	+	.	ID=gene2745;Name=Dshi_2708;Dbxref=GeneID:5713607;gbkey=Gene;locus_tag=Dshi_2708
NC_009952.1	RefSeq	CDS	2869501	2871093	.	+	0	ID=cds2699;Name=YP_001534042.1;Parent=gene2745;Note=TIGRFAM: PAS sensor protein PFAM: response regulator receiver%3B ATP-binding region ATPase domain protein%3B histidine kinase A domain protein%3B PAS fold-3 domain protein%3B PAS fold-4 domain protein%3B PAS fold domain protein SMART: PAS domain containing protein;Dbxref=Genbank:YP_001534042.1,GeneID:5713607;gbkey=CDS;product=sensor hybrid histidine kinase;protein_id=YP_001534042.1;transl_table=11
NC_009952.1	RefSeq	gene	2871102	2871578	.	-	.	ID=gene2746;Name=msrB1;Dbxref=GeneID:5713608;gbkey=Gene;gene=msrB1;locus_tag=Dshi_2709
NC_009952.1	RefSeq	CDS	2871102	2871578	.	-	0	ID=cds2700;Name=YP_001534043.1;Parent=gene2746;Note=Swiss-Prot: Q92RA4-Peptide methionine sulfoxide reductase msrB 1 TIGRFAM: methionine-R-sulfoxide reductase PFAM: Methionine sulfoxide reductase B;Dbxref=Genbank:YP_001534043.1,GeneID:5713608;gbkey=CDS;gene=msrB1;product=peptide methionine sulfoxide reductase;protein_id=YP_001534043.1;transl_table=11
NC_009952.1	RefSeq	gene	2871715	2872920	.	+	.	ID=gene2747;Name=Dshi_2710;Dbxref=GeneID:5713609;gbkey=Gene;locus_tag=Dshi_2710
NC_009952.1	RefSeq	CDS	2871715	2872920	.	+	0	ID=cds2701;Name=YP_001534044.1;Parent=gene2747;Note=PFAM: HI0933 family protein%3B FAD dependent oxidoreductase TIGR00275: conserved hypothetical protein SSF51905: FAD%2FNAD%28P%29-binding domain superfamily;Dbxref=Genbank:YP_001534044.1,GeneID:5713609;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534044.1;transl_table=11
NC_009952.1	RefSeq	gene	2873040	2874023	.	+	.	ID=gene2748;Name=cobS2;Dbxref=GeneID:5713610;gbkey=Gene;gene=cobS2;locus_tag=Dshi_2711
NC_009952.1	RefSeq	CDS	2873040	2874023	.	+	0	ID=cds2702;Name=YP_001534045.1;Parent=gene2748;Note=Swiss-Prot: P29933-Aerobic cobaltochelatase subunit cobS TIGRFAM: cobalt chelatase%2C pCobS small subunit PFAM: ATPase associated with various cellular activities AAA_5;Dbxref=Genbank:YP_001534045.1,GeneID:5713610;gbkey=CDS;gene=cobS2;product=aerobic cobaltochelatase subunit cobS;protein_id=YP_001534045.1;transl_table=11
NC_009952.1	RefSeq	gene	2874084	2874764	.	-	.	ID=gene2749;Name=Dshi_2712;Dbxref=GeneID:5713611;gbkey=Gene;locus_tag=Dshi_2712
NC_009952.1	RefSeq	CDS	2874084	2874764	.	-	0	ID=cds2703;Name=YP_001534046.1;Parent=gene2749;Note=Swiss-Prot: Q05197-Phosphatidylethanolamine N-methyltransferase %5Bpredicted%5D PFAM: UbiE%2FCOQ5 methyltransferase%3B Methyltransferase type 11%3B Methyltransferase type 12;Dbxref=Genbank:YP_001534046.1,GeneID:5713611;gbkey=CDS;product=putative phosphatidylethanolamine N-methyltransferase;protein_id=YP_001534046.1;transl_table=11
NC_009952.1	RefSeq	gene	2874781	2875530	.	-	.	ID=gene2750;Name=Dshi_2713;Dbxref=GeneID:5713612;gbkey=Gene;locus_tag=Dshi_2713
NC_009952.1	RefSeq	CDS	2874781	2875530	.	-	0	ID=cds2704;Name=YP_001534047.1;Parent=gene2750;Note=Swiss-Prot: Q9ZBM2- CDP-diacylglycerol--serine O-phosphatidyltransferase TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase PFAM: CDP-alcohol phosphatidyltransferase;Dbxref=Genbank:YP_001534047.1,GeneID:5713612;gbkey=CDS;product=putative CDP-diacylglycerol--serine O-phosphatidyltransferase;protein_id=YP_001534047.1;transl_table=11
NC_009952.1	RefSeq	gene	2875527	2876204	.	-	.	ID=gene2751;Name=psd;Dbxref=GeneID:5713613;gbkey=Gene;gene=psd;locus_tag=Dshi_2714
NC_009952.1	RefSeq	CDS	2875527	2876204	.	-	0	ID=cds2705;Name=YP_001534048.1;Parent=gene2751;Note=catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine;Dbxref=Genbank:YP_001534048.1,GeneID:5713613;gbkey=CDS;gene=psd;product=phosphatidylserine decarboxylase;protein_id=YP_001534048.1;transl_table=11
NC_009952.1	RefSeq	gene	2876659	2877963	.	+	.	ID=gene2752;Name=Dshi_2715;Dbxref=GeneID:5713614;gbkey=Gene;locus_tag=Dshi_2715
NC_009952.1	RefSeq	CDS	2876659	2877963	.	+	0	ID=cds2706;Name=YP_001534049.1;Parent=gene2752;Note=Swiss-Prot: P25888-Putative ATP-dependent RNA helicase rhlE PFAM: helicase domain protein%3B DEAD%2FDEAH box helicase domain protein SMART: DEAD-like helicases;Dbxref=Genbank:YP_001534049.1,GeneID:5713614;gbkey=CDS;product=putative ATP-dependent RNA helicase;protein_id=YP_001534049.1;transl_table=11
NC_009952.1	RefSeq	gene	2878109	2878555	.	-	.	ID=gene2753;Name=Dshi_2716;Dbxref=GeneID:5713615;gbkey=Gene;locus_tag=Dshi_2716
NC_009952.1	RefSeq	CDS	2878109	2878555	.	-	0	ID=cds2707;Name=YP_001534050.1;Parent=gene2753;Dbxref=Genbank:YP_001534050.1,GeneID:5713615;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534050.1;transl_table=11
NC_009952.1	RefSeq	gene	2878689	2879210	.	+	.	ID=gene2754;Name=Dshi_2717;Dbxref=GeneID:5713616;gbkey=Gene;locus_tag=Dshi_2717
NC_009952.1	RefSeq	CDS	2878689	2879210	.	+	0	ID=cds2708;Name=YP_001534051.1;Parent=gene2754;Dbxref=Genbank:YP_001534051.1,GeneID:5713616;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534051.1;transl_table=11
NC_009952.1	RefSeq	gene	2879224	2879460	.	+	.	ID=gene2755;Name=Dshi_2718;Dbxref=GeneID:5713617;gbkey=Gene;locus_tag=Dshi_2718
NC_009952.1	RefSeq	CDS	2879224	2879460	.	+	0	ID=cds2709;Name=YP_001534052.1;Parent=gene2755;Note=SMART: Helix-turn-helix XRE-family like proteins%3B XRE family;Dbxref=Genbank:YP_001534052.1,GeneID:5713617;gbkey=CDS;product=putative transcriptional regulator;protein_id=YP_001534052.1;transl_table=11
NC_009952.1	RefSeq	gene	2879516	2881390	.	+	.	ID=gene2756;Name=cobT1;Dbxref=GeneID:5713618;gbkey=Gene;gene=cobT1;locus_tag=Dshi_2719
NC_009952.1	RefSeq	CDS	2879516	2881390	.	+	0	ID=cds2710;Name=YP_001534053.1;Parent=gene2756;Note=Swiss-Prot: P29934-Aerobic cobaltochelatase subunit cobT TIGR01651: cobaltochelatase%2C CobT subunit PFAM: Cobalt chelatase CobT subunit SMART: von Willebrand factor type A;Dbxref=Genbank:YP_001534053.1,GeneID:5713618;gbkey=CDS;gene=cobT1;product=aerobic cobaltochelatase subunit cobT;protein_id=YP_001534053.1;transl_table=11
NC_009952.1	RefSeq	gene	2881448	2882575	.	+	.	ID=gene2757;Name=Dshi_2720;Dbxref=GeneID:5713619;gbkey=Gene;locus_tag=Dshi_2720
NC_009952.1	RefSeq	CDS	2881448	2882575	.	+	0	ID=cds2711;Name=YP_001534054.1;Parent=gene2757;Note=PFAM: Endonuclease%2Fexonuclease%2Fphosphatase;Dbxref=Genbank:YP_001534054.1,GeneID:5713619;gbkey=CDS;product=putative endonuclease%2Fexonuclease%2Fphosphatase;protein_id=YP_001534054.1;transl_table=11
NC_009952.1	RefSeq	gene	2882651	2884507	.	+	.	ID=gene2758;Name=Dshi_2721;Dbxref=GeneID:5713620;gbkey=Gene;locus_tag=Dshi_2721
NC_009952.1	RefSeq	CDS	2882651	2884507	.	+	0	ID=cds2712;Name=YP_001534055.1;Parent=gene2758;Note=PFAM: creatinase%3B peptidase M24;Dbxref=Genbank:YP_001534055.1,GeneID:5713620;gbkey=CDS;product=putative metallopeptidase;protein_id=YP_001534055.1;transl_table=11
NC_009952.1	RefSeq	gene	2884592	2884933	.	+	.	ID=gene2759;Name=Dshi_2722;Dbxref=GeneID:5713621;gbkey=Gene;locus_tag=Dshi_2722
NC_009952.1	RefSeq	CDS	2884592	2884933	.	+	0	ID=cds2713;Name=YP_001534056.1;Parent=gene2759;Note=PFAM: protein of unknown function DUF427 COG2343: Uncharacterized protein conserved in bacteria;Dbxref=Genbank:YP_001534056.1,GeneID:5713621;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534056.1;transl_table=11
NC_009952.1	RefSeq	gene	2885147	2885776	.	-	.	ID=gene2760;Name=Dshi_2723;Dbxref=GeneID:5713622;gbkey=Gene;locus_tag=Dshi_2723
NC_009952.1	RefSeq	CDS	2885147	2885776	.	-	0	ID=cds2714;Name=YP_001534057.1;Parent=gene2760;Note=TIGR00997: intracellular septation protein A PFAM: Intracellular septation protein A;Dbxref=Genbank:YP_001534057.1,GeneID:5713622;gbkey=CDS;product=intracellular septation protein A;protein_id=YP_001534057.1;transl_table=11
NC_009952.1	RefSeq	gene	2885773	2886675	.	-	.	ID=gene2761;Name=Dshi_2724;Dbxref=GeneID:5713623;gbkey=Gene;locus_tag=Dshi_2724
NC_009952.1	RefSeq	CDS	2885773	2886675	.	-	0	ID=cds2715;Name=YP_001534058.1;Parent=gene2761;Note=PFAM: protein of unknown function DUF6 transmembrane;Dbxref=Genbank:YP_001534058.1,GeneID:5713623;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534058.1;transl_table=11
NC_009952.1	RefSeq	gene	2886699	2888198	.	-	.	ID=gene2762;Name=Dshi_2725;Dbxref=GeneID:5713624;gbkey=Gene;locus_tag=Dshi_2725
NC_009952.1	RefSeq	CDS	2886699	2888198	.	-	0	ID=cds2716;Name=YP_001534059.1;Parent=gene2762;Note=Swiss-Prot: P10121-Cell division protein ftsY TIGRFAM: signal recognition particle-docking protein FtsY PFAM: GTP-binding signal recognition particle SRP54 G- domain SMART: AAA ATPase%3B related to cell division protein ftsY;Dbxref=Genbank:YP_001534059.1,GeneID:5713624;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534059.1;transl_table=11
NC_009952.1	RefSeq	gene	2888326	2888730	.	+	.	ID=gene2763;Name=Dshi_2726;Dbxref=GeneID:5713625;gbkey=Gene;locus_tag=Dshi_2726
NC_009952.1	RefSeq	CDS	2888326	2888730	.	+	0	ID=cds2717;Name=YP_001534060.1;Parent=gene2763;Dbxref=Genbank:YP_001534060.1,GeneID:5713625;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534060.1;transl_table=11
NC_009952.1	RefSeq	gene	2888799	2890370	.	-	.	ID=gene2764;Name=xseA;Dbxref=GeneID:5713626;gbkey=Gene;gene=xseA;locus_tag=Dshi_2727
NC_009952.1	RefSeq	CDS	2888799	2890370	.	-	0	ID=cds2718;Name=YP_001534061.1;Parent=gene2764;Note=Swiss-Prot: Q1GF88-Exodeoxyribonuclease 7 large subunit;Dbxref=Genbank:YP_001534061.1,GeneID:5713626;gbkey=CDS;gene=xseA;product=exodeoxyribonuclease 7 large subunit;protein_id=YP_001534061.1;transl_table=11
NC_009952.1	RefSeq	gene	2890448	2891710	.	+	.	ID=gene2765;Name=purD;Dbxref=GeneID:5713627;gbkey=Gene;gene=purD;locus_tag=Dshi_2728
NC_009952.1	RefSeq	CDS	2890448	2891710	.	+	0	ID=cds2719;Name=YP_001534062.1;Parent=gene2765;Note=catalyzes the formation of N%281%29-%285-phospho-D-ribosyl%29glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis;Dbxref=Genbank:YP_001534062.1,GeneID:5713627;gbkey=CDS;gene=purD;product=phosphoribosylamine--glycine ligase;protein_id=YP_001534062.1;transl_table=11
NC_009952.1	RefSeq	gene	2891789	2892655	.	+	.	ID=gene2766;Name=Dshi_2729;Dbxref=GeneID:5713628;gbkey=Gene;locus_tag=Dshi_2729
NC_009952.1	RefSeq	CDS	2891789	2892655	.	+	0	ID=cds2720;Name=YP_001534063.1;Parent=gene2766;Note=PFAM: Ion transport 2 domain protein;Dbxref=Genbank:YP_001534063.1,GeneID:5713628;gbkey=CDS;product=putative ion transport protein;protein_id=YP_001534063.1;transl_table=11
NC_009952.1	RefSeq	gene	2892698	2893456	.	-	.	ID=gene2767;Name=Dshi_2730;Dbxref=GeneID:5713629;gbkey=Gene;locus_tag=Dshi_2730
NC_009952.1	RefSeq	CDS	2892698	2893456	.	-	0	ID=cds2721;Name=YP_001534064.1;Parent=gene2767;Dbxref=Genbank:YP_001534064.1,GeneID:5713629;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534064.1;transl_table=11
NC_009952.1	RefSeq	gene	2893456	2893779	.	-	.	ID=gene2768;Name=Dshi_2731;Dbxref=GeneID:5713630;gbkey=Gene;locus_tag=Dshi_2731
NC_009952.1	RefSeq	CDS	2893456	2893779	.	-	0	ID=cds2722;Name=YP_001534065.1;Parent=gene2768;Note=Swiss-Prot: P80306-Ferredoxin-6 PFAM: ferredoxin;Dbxref=Genbank:YP_001534065.1,GeneID:5713630;gbkey=CDS;product=ferredoxin;protein_id=YP_001534065.1;transl_table=11
NC_009952.1	RefSeq	gene	2893851	2894264	.	+	.	ID=gene2769;Name=Dshi_2732;Dbxref=GeneID:5713631;gbkey=Gene;locus_tag=Dshi_2732
NC_009952.1	RefSeq	CDS	2893851	2894264	.	+	0	ID=cds2723;Name=YP_001534066.1;Parent=gene2769;Note=PFAM: nucleic acid binding OB-fold tRNA%2Fhelicase-type COG0587: DNA polymerase III%2C alpha subunit%3B associated with nucleic acid binding;Dbxref=Genbank:YP_001534066.1,GeneID:5713631;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534066.1;transl_table=11
NC_009952.1	RefSeq	gene	2894377	2895882	.	-	.	ID=gene2770;Name=degP;Dbxref=GeneID:5713632;gbkey=Gene;gene=degP;locus_tag=Dshi_2733
NC_009952.1	RefSeq	CDS	2894377	2895882	.	-	0	ID=cds2724;Name=YP_001534067.1;Parent=gene2770;Note=Swiss-Prot: P0C0V0-Protease do %5BPrecursor%5D TIGR02037: periplasmic serine protease%2C Do%2FDeqQ family PFAM: peptidase S1 and S6 chymotrypsin%2FHap%3B PDZ%2FDHR%2FGLGF domain protein;Dbxref=Genbank:YP_001534067.1,GeneID:5713632;gbkey=CDS;gene=degP;product=protease do;protein_id=YP_001534067.1;transl_table=11
NC_009952.1	RefSeq	gene	2896047	2896241	.	-	.	ID=gene2771;Name=Dshi_2734;Dbxref=GeneID:5713633;gbkey=Gene;locus_tag=Dshi_2734
NC_009952.1	RefSeq	CDS	2896047	2896241	.	-	0	ID=cds2725;Name=YP_001534068.1;Parent=gene2771;Dbxref=Genbank:YP_001534068.1,GeneID:5713633;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534068.1;transl_table=11
NC_009952.1	RefSeq	gene	2896241	2897134	.	-	.	ID=gene2772;Name=hflC;Dbxref=GeneID:5713634;gbkey=Gene;gene=hflC;locus_tag=Dshi_2735
NC_009952.1	RefSeq	CDS	2896241	2897134	.	-	0	ID=cds2726;Name=YP_001534069.1;Parent=gene2772;Note=Swiss-Prot: P0ABC3-Protein hflC TIGRFAM: HflC protein PFAM: band 7 protein%3B colocated with hflK;Dbxref=Genbank:YP_001534069.1,GeneID:5713634;gbkey=CDS;gene=hflC;product=protein hflC;protein_id=YP_001534069.1;transl_table=11
NC_009952.1	RefSeq	gene	2897134	2898282	.	-	.	ID=gene2773;Name=hflK;Dbxref=GeneID:5713635;gbkey=Gene;gene=hflK;locus_tag=Dshi_2736
NC_009952.1	RefSeq	CDS	2897134	2898282	.	-	0	ID=cds2727;Name=YP_001534070.1;Parent=gene2773;Note=Swiss-Prot: P0ABC7-Protein hflK TIGRFAM: HflK protein%3B colocated with hflC;Dbxref=Genbank:YP_001534070.1,GeneID:5713635;gbkey=CDS;gene=hflK;product=Protein HflK;protein_id=YP_001534070.1;transl_table=11
NC_009952.1	RefSeq	gene	2898349	2899800	.	-	.	ID=gene2774;Name=gor;Dbxref=GeneID:5713636;gbkey=Gene;gene=gor;locus_tag=Dshi_2737
NC_009952.1	RefSeq	CDS	2898349	2899800	.	-	0	ID=cds2728;Name=YP_001534071.1;Parent=gene2774;Note=Swiss-Prot: P06715-Glutathione reductase PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase%3B pyridine nucleotide-disulphide oxidoreductase dimerisation region;Dbxref=Genbank:YP_001534071.1,GeneID:5713636;gbkey=CDS;gene=gor;product=glutathione reductase;protein_id=YP_001534071.1;transl_table=11
NC_009952.1	RefSeq	gene	2899846	2900628	.	-	.	ID=gene2775;Name=rpiA;Dbxref=GeneID:5713637;gbkey=Gene;gene=rpiA;locus_tag=Dshi_2738
NC_009952.1	RefSeq	CDS	2899846	2900628	.	-	0	ID=cds2729;Name=YP_001534072.1;Parent=gene2775;Note=Catalyzes D-ribose 5-phosphate --%3E D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway;Dbxref=Genbank:YP_001534072.1,GeneID:5713637;gbkey=CDS;gene=rpiA;product=ribose-5-phosphate isomerase A;protein_id=YP_001534072.1;transl_table=11
NC_009952.1	RefSeq	gene	2900734	2901423	.	-	.	ID=gene2776;Name=Dshi_2739;Dbxref=GeneID:5713638;gbkey=Gene;locus_tag=Dshi_2739
NC_009952.1	RefSeq	CDS	2900734	2901423	.	-	0	ID=cds2730;Name=YP_001534073.1;Parent=gene2776;Note=TIGRFAM: thiamine pyrophosphokinase PFAM: Thiamin pyrophosphokinase catalytic region;Dbxref=Genbank:YP_001534073.1,GeneID:5713638;gbkey=CDS;product=putative thiamine pyrophosphokinase;protein_id=YP_001534073.1;transl_table=11
NC_009952.1	RefSeq	gene	2901566	2903512	.	+	.	ID=gene2777;Name=Dshi_2740;Dbxref=GeneID:5713639;gbkey=Gene;locus_tag=Dshi_2740
NC_009952.1	RefSeq	CDS	2901566	2903512	.	+	0	ID=cds2731;Name=YP_001534074.1;Parent=gene2777;Note=PFAM: herpesvirus transcription activation factor%3B related to transactivator;Dbxref=Genbank:YP_001534074.1,GeneID:5713639;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534074.1;transl_table=11
NC_009952.1	RefSeq	gene	2903555	2903791	.	-	.	ID=gene2778;Name=Dshi_2741;Dbxref=GeneID:5713640;gbkey=Gene;locus_tag=Dshi_2741
NC_009952.1	RefSeq	CDS	2903555	2903791	.	-	0	ID=cds2732;Name=YP_001534075.1;Parent=gene2778;Note=Swiss-Prot: P45566-Uncharacterized protein yhdT;Dbxref=Genbank:YP_001534075.1,GeneID:5713640;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534075.1;transl_table=11
NC_009952.1	RefSeq	gene	2903816	2905111	.	-	.	ID=gene2779;Name=purA;Dbxref=GeneID:5713641;gbkey=Gene;gene=purA;locus_tag=Dshi_2742
NC_009952.1	RefSeq	CDS	2903816	2905111	.	-	0	ID=cds2733;Name=YP_001534076.1;Parent=gene2779;Note=catalyzes the formation of N6-%281%2C2%2C-dicarboxyethyl%29-AMP from L-aspartate%2C inosine monophosphate and GTP in AMP biosynthesis;Dbxref=Genbank:YP_001534076.1,GeneID:5713641;gbkey=CDS;gene=purA;product=adenylosuccinate synthetase;protein_id=YP_001534076.1;transl_table=11
NC_009952.1	RefSeq	gene	2905312	2905680	.	+	.	ID=gene2780;Name=secG;Dbxref=GeneID:5713642;gbkey=Gene;gene=secG;locus_tag=Dshi_2743
NC_009952.1	RefSeq	CDS	2905312	2905680	.	+	0	ID=cds2734;Name=YP_001534077.1;Parent=gene2780;Note=TIGRFAM: preprotein translocase%2C SecG subunit PFAM: Preprotein translocase SecG subunit%3B SecG subunit;Dbxref=Genbank:YP_001534077.1,GeneID:5713642;gbkey=CDS;gene=secG;product=preprotein translocase subunit SecG;protein_id=YP_001534077.1;transl_table=11
NC_009952.1	RefSeq	gene	2905872	2907515	.	+	.	ID=gene2781;Name=pyrG;Dbxref=GeneID:5713643;gbkey=Gene;gene=pyrG;locus_tag=Dshi_2744
NC_009952.1	RefSeq	CDS	2905872	2907515	.	+	0	ID=cds2735;Name=YP_001534078.1;Parent=gene2781;Note=CTP synthase%3B cytidine triphosphate synthetase%3B catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen%3B in Escherichia coli this enzyme forms a homotetramer;Dbxref=Genbank:YP_001534078.1,GeneID:5713643;gbkey=CDS;gene=pyrG;product=CTP synthetase;protein_id=YP_001534078.1;transl_table=11
NC_009952.1	RefSeq	gene	2907576	2908436	.	+	.	ID=gene2782;Name=Dshi_2745;Dbxref=GeneID:5713644;gbkey=Gene;locus_tag=Dshi_2745
NC_009952.1	RefSeq	CDS	2907576	2908436	.	+	0	ID=cds2736;Name=YP_001534079.1;Parent=gene2782;Note=Swiss-Prot: P37757-Uncharacterized isomerase yddE TIGRFAM: phenazine biosynthesis protein PhzF family PFAM: Phenazine biosynthesis PhzC%2FPhzF protein;Dbxref=Genbank:YP_001534079.1,GeneID:5713644;gbkey=CDS;product=isomerase;protein_id=YP_001534079.1;transl_table=11
NC_009952.1	RefSeq	gene	2908468	2908728	.	-	.	ID=gene2783;Name=Dshi_2746;Dbxref=GeneID:5713645;gbkey=Gene;locus_tag=Dshi_2746
NC_009952.1	RefSeq	CDS	2908468	2908728	.	-	0	ID=cds2737;Name=YP_001534080.1;Parent=gene2783;Note=KEGG: rde:RD1_1231 hypothetical protein;Dbxref=Genbank:YP_001534080.1,GeneID:5713645;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534080.1;transl_table=11
NC_009952.1	RefSeq	gene	2908850	2909440	.	+	.	ID=gene2784;Name=Dshi_2747;Dbxref=GeneID:5713646;gbkey=Gene;locus_tag=Dshi_2747
NC_009952.1	RefSeq	CDS	2908850	2909440	.	+	0	ID=cds2738;Name=YP_001534081.1;Parent=gene2784;Note=KEGG: sil:SPO0431 hypothetical protein;Dbxref=Genbank:YP_001534081.1,GeneID:5713646;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534081.1;transl_table=11
NC_009952.1	RefSeq	gene	2909448	2910770	.	-	.	ID=gene2785;Name=gltX;Dbxref=GeneID:5713647;gbkey=Gene;gene=gltX;locus_tag=Dshi_2748
NC_009952.1	RefSeq	CDS	2909448	2910770	.	-	0	ID=cds2739;Name=YP_001534082.1;Parent=gene2785;Note=Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation;Dbxref=Genbank:YP_001534082.1,GeneID:5713647;gbkey=CDS;gene=gltX;product=glutamyl-tRNA synthetase;protein_id=YP_001534082.1;transl_table=11
NC_009952.1	RefSeq	gene	2910830	2912143	.	-	.	ID=gene2786;Name=Dshi_2749;Dbxref=GeneID:5713648;gbkey=Gene;locus_tag=Dshi_2749
NC_009952.1	RefSeq	CDS	2910830	2912143	.	-	0	ID=cds2740;Name=YP_001534083.1;Parent=gene2786;Note=Swiss-Prot: PFAM: Di-haem cytochrome c peroxidase COG1858: Cytochrome c peroxidase Swiss-Prot: %5Bpredicted%5D Q51658-Methylamine utilization protein mauG %5BPrecursor%5D P37197-Probable cytochrome c peroxidase;Dbxref=Genbank:YP_001534083.1,GeneID:5713648;gbkey=CDS;product=putative cytochrome c peroxidase;protein_id=YP_001534083.1;transl_table=11
NC_009952.1	RefSeq	gene	2912622	2913089	.	+	.	ID=gene2787;Name=Dshi_2750;Dbxref=GeneID:5713649;gbkey=Gene;locus_tag=Dshi_2750
NC_009952.1	RefSeq	CDS	2912622	2913089	.	+	0	ID=cds2741;Name=YP_001534084.1;Parent=gene2787;Dbxref=Genbank:YP_001534084.1,GeneID:5713649;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534084.1;transl_table=11
NC_009952.1	RefSeq	gene	2913448	2913789	.	-	.	ID=gene2788;Name=Dshi_2751;Dbxref=GeneID:5713650;gbkey=Gene;locus_tag=Dshi_2751
NC_009952.1	RefSeq	CDS	2913448	2913789	.	-	0	ID=cds2742;Name=YP_001534085.1;Parent=gene2788;Dbxref=Genbank:YP_001534085.1,GeneID:5713650;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534085.1;transl_table=11
NC_009952.1	RefSeq	gene	2913824	2914882	.	-	.	ID=gene2789;Name=Dshi_2752;Dbxref=GeneID:5713651;gbkey=Gene;locus_tag=Dshi_2752
NC_009952.1	RefSeq	CDS	2913824	2914882	.	-	0	ID=cds2743;Name=YP_001534086.1;Parent=gene2789;Note=Swiss-Prot: P44542-Sialic acid-binding periplasmic protein siaP %5BPrecursor%5D PFAM: TRAP dicarboxylate transporter- DctP subunit COG1638: TRAP-type C4-dicarboxylate transport system%2C periplasmic component%3B colocated with DctQ %26 DctM subunits%3B DctP subunit;Dbxref=Genbank:YP_001534086.1,GeneID:5713651;gbkey=CDS;product=TRAP dicarboxylate transporter;protein_id=YP_001534086.1;transl_table=11
NC_009952.1	RefSeq	gene	2914929	2916218	.	-	.	ID=gene2790;Name=Dshi_2753;Dbxref=GeneID:5713652;gbkey=Gene;locus_tag=Dshi_2753
NC_009952.1	RefSeq	CDS	2914929	2916218	.	-	0	ID=cds2744;Name=YP_001534087.1;Parent=gene2790;Note=Swiss-Prot: P44543-Sialic acid TRAP transporter permease protein TIGRFAM: TRAP dicarboxylate transporter%2C DctM subunit PFAM: Citrate transporter%3B TRAP C4-dicarboxylate transport system permease DctM subunit%3B colocated with DctQ %26 DctP subunit%3B DctM subunit;Dbxref=Genbank:YP_001534087.1,GeneID:5713652;gbkey=CDS;product=TRAP dicarboxylate transporter;protein_id=YP_001534087.1;transl_table=11
NC_009952.1	RefSeq	gene	2916220	2916810	.	-	.	ID=gene2791;Name=Dshi_2754;Dbxref=GeneID:5713653;gbkey=Gene;locus_tag=Dshi_2754
NC_009952.1	RefSeq	CDS	2916220	2916810	.	-	0	ID=cds2745;Name=YP_001534088.1;Parent=gene2791;Note=Swiss-Prot: P44994-Putative TRAP transporter small permease protein HI1030 PFAM: Tripartite ATP-independent periplasmic transporter DctQ component%3B colocated with DctM %26 DctP subunits%3B DctQ component;Dbxref=Genbank:YP_001534088.1,GeneID:5713653;gbkey=CDS;product=tripartite ATP-independent periplasmic transporter;protein_id=YP_001534088.1;transl_table=11
NC_009952.1	RefSeq	gene	2916877	2917410	.	-	.	ID=gene2792;Name=Dshi_2755;Dbxref=GeneID:5713654;gbkey=Gene;locus_tag=Dshi_2755
NC_009952.1	RefSeq	CDS	2916877	2917410	.	-	0	ID=cds2746;Name=YP_001534089.1;Parent=gene2792;Note=Swiss-Prot: P54990-Nitrilotriacetate monooxygenase component B PFAM: flavin reductase domain protein FMN-binding%3B FMN-binding;Dbxref=Genbank:YP_001534089.1,GeneID:5713654;gbkey=CDS;product=flavin reductase domain-containing protein;protein_id=YP_001534089.1;transl_table=11
NC_009952.1	RefSeq	gene	2917412	2918302	.	-	.	ID=gene2793;Name=Dshi_2756;Dbxref=GeneID:5713655;gbkey=Gene;locus_tag=Dshi_2756
NC_009952.1	RefSeq	CDS	2917412	2918302	.	-	0	ID=cds2747;Name=YP_001534090.1;Parent=gene2793;Note=Swiss-Prot: P42972-Uncharacterized oxidoreductase ycsN PFAM: aldo%2Fketo reductase COG4989: Predicted oxidoreductase;Dbxref=Genbank:YP_001534090.1,GeneID:5713655;gbkey=CDS;product=aldo%2Fketo reductase;protein_id=YP_001534090.1;transl_table=11
NC_009952.1	RefSeq	gene	2918302	2919456	.	-	.	ID=gene2794;Name=ssuD;Dbxref=GeneID:5713656;gbkey=Gene;gene=ssuD;locus_tag=Dshi_2757
NC_009952.1	RefSeq	CDS	2918302	2919456	.	-	0	ID=cds2748;Name=YP_001534091.1;Parent=gene2794;Note=Swiss-Prot: P80645-Alkanesulfonate monooxygenase PFAM: luciferase family protein;Dbxref=Genbank:YP_001534091.1,GeneID:5713656;gbkey=CDS;gene=ssuD;product=alkanesulfonate monooxygenase;protein_id=YP_001534091.1;transl_table=11
NC_009952.1	RefSeq	gene	2919558	2920268	.	+	.	ID=gene2795;Name=Dshi_2758;Dbxref=GeneID:5713657;gbkey=Gene;locus_tag=Dshi_2758
NC_009952.1	RefSeq	CDS	2919558	2920268	.	+	0	ID=cds2749;Name=YP_001534092.1;Parent=gene2795;Note=PFAM: regulatory protein GntR HTH%3B UbiC transcription regulator-associated domain protein%3B GntR family;Dbxref=Genbank:YP_001534092.1,GeneID:5713657;gbkey=CDS;product=transcriptional regulator;protein_id=YP_001534092.1;transl_table=11
NC_009952.1	RefSeq	gene	2920265	2921386	.	+	.	ID=gene2796;Name=Dshi_2759;Dbxref=GeneID:5713658;gbkey=Gene;locus_tag=Dshi_2759
NC_009952.1	RefSeq	CDS	2920265	2921386	.	+	0	ID=cds2750;Name=YP_001534093.1;Parent=gene2796;Note=Swiss-Prot: O05389-Putative oxidoreductase yrbE PFAM: oxidoreductase domain protein%3B Oxidoreductase domain COG0673: Predicted dehydrogenases and related proteins;Dbxref=Genbank:YP_001534093.1,GeneID:5713658;gbkey=CDS;product=putative oxidoreductase;protein_id=YP_001534093.1;transl_table=11
NC_009952.1	RefSeq	gene	2921376	2922041	.	-	.	ID=gene2797;Name=Dshi_2760;Dbxref=GeneID:5713659;gbkey=Gene;locus_tag=Dshi_2760
NC_009952.1	RefSeq	CDS	2921376	2922041	.	-	0	ID=cds2751;Name=YP_001534094.1;Parent=gene2797;Note=Swiss-Prot: P32662-Phosphoglycolate phosphatase TIGRFAM: phosphoglycolate phosphatase %3B HAD-superfamily hydrolase%2C subfamily IA%2C variant 3%3B HAD-superfamily hydrolase%2C subfamily IA%2C variant 1 PFAM: Haloacid dehalogenase domain protein hydrolase;Dbxref=Genbank:YP_001534094.1,GeneID:5713659;gbkey=CDS;product=putative phosphoglycolate phosphatase;protein_id=YP_001534094.1;transl_table=11
NC_009952.1	RefSeq	gene	2922178	2923956	.	-	.	ID=gene2798;Name=Dshi_2761;Dbxref=GeneID:5713660;gbkey=Gene;locus_tag=Dshi_2761
NC_009952.1	RefSeq	CDS	2922178	2923956	.	-	0	ID=cds2752;Name=YP_001534095.1;Parent=gene2798;Note=Swiss-Prot: P0AFU2-Uncharacterized transporter yfbS PFAM: Citrate transporter%3B TrkA-C domain protein;Dbxref=Genbank:YP_001534095.1,GeneID:5713660;gbkey=CDS;product=transporter;protein_id=YP_001534095.1;transl_table=11
NC_009952.1	RefSeq	gene	2924076	2924816	.	+	.	ID=gene2799;Name=Dshi_2762;Dbxref=GeneID:5713661;gbkey=Gene;locus_tag=Dshi_2762
NC_009952.1	RefSeq	CDS	2924076	2924816	.	+	0	ID=cds2753;Name=YP_001534096.1;Parent=gene2799;Note=Swiss-Prot: P0A8A0-UPF0082 protein yebC TIGR01033 conserved hypothetical protein COG0217: Uncharacterized conserved protein;Dbxref=Genbank:YP_001534096.1,GeneID:5713661;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534096.1;transl_table=11
NC_009952.1	RefSeq	gene	2924884	2926548	.	-	.	ID=gene2800;Name=Dshi_2763;Dbxref=GeneID:5713662;gbkey=Gene;locus_tag=Dshi_2763
NC_009952.1	RefSeq	CDS	2924884	2926548	.	-	0	ID=cds2754;Name=YP_001534097.1;Parent=gene2800;Note=Swiss-Prot: P09983-Hemolysin%2C chromosomal PFAM: Hemolysin-type calcium-binding region%3B related to hemolysin;Dbxref=Genbank:YP_001534097.1,GeneID:5713662;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534097.1;transl_table=11
NC_009952.1	RefSeq	gene	2926666	2927010	.	-	.	ID=gene2801;Name=Dshi_2764;Dbxref=GeneID:5713663;gbkey=Gene;locus_tag=Dshi_2764
NC_009952.1	RefSeq	CDS	2926666	2927010	.	-	0	ID=cds2755;Name=YP_001534098.1;Parent=gene2801;Dbxref=Genbank:YP_001534098.1,GeneID:5713663;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534098.1;transl_table=11
NC_009952.1	RefSeq	gene	2927040	2927444	.	-	.	ID=gene2802;Name=Dshi_2765;Dbxref=GeneID:5713664;gbkey=Gene;locus_tag=Dshi_2765
NC_009952.1	RefSeq	CDS	2927040	2927444	.	-	0	ID=cds2756;Name=YP_001534099.1;Parent=gene2802;Dbxref=Genbank:YP_001534099.1,GeneID:5713664;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534099.1;transl_table=11
NC_009952.1	RefSeq	gene	2927535	2929334	.	-	.	ID=gene2803;Name=Dshi_2766;Dbxref=GeneID:5713665;gbkey=Gene;locus_tag=Dshi_2766
NC_009952.1	RefSeq	CDS	2927535	2929334	.	-	0	ID=cds2757;Name=YP_001534100.1;Parent=gene2803;Note=Swiss-Prot: P72958-Uncharacterized transporter sll0640 PFAM: Citrate transporter%3B TrkA-C domain protein%3B TRAP C4-dicarboxylate transport system permease DctM subunit;Dbxref=Genbank:YP_001534100.1,GeneID:5713665;gbkey=CDS;product=transporter;protein_id=YP_001534100.1;transl_table=11
NC_009952.1	RefSeq	gene	2929331	2930296	.	-	.	ID=gene2804;Name=Dshi_2767;Dbxref=GeneID:5713666;gbkey=Gene;locus_tag=Dshi_2767
NC_009952.1	RefSeq	CDS	2929331	2930296	.	-	0	ID=cds2758;Name=YP_001534101.1;Parent=gene2804;Note=PFAM: protein of unknown function DUF6 transmembrane;Dbxref=Genbank:YP_001534101.1,GeneID:5713666;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534101.1;transl_table=11
NC_009952.1	RefSeq	gene	2930293	2931126	.	-	.	ID=gene2805;Name=Dshi_2768;Dbxref=GeneID:5713667;gbkey=Gene;locus_tag=Dshi_2768
NC_009952.1	RefSeq	CDS	2930293	2931126	.	-	0	ID=cds2759;Name=YP_001534102.1;Parent=gene2805;Note=Swiss-Prot: P75429-Uncharacterized protein MG246 homolog TIGR00282%23 conserved hypothetical protein COG1692: Uncharacterized protein conserved in bacteria;Dbxref=Genbank:YP_001534102.1,GeneID:5713667;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534102.1;transl_table=11
NC_009952.1	RefSeq	gene	2931169	2931762	.	-	.	ID=gene2806;Name=Dshi_2769;Dbxref=GeneID:5713668;gbkey=Gene;locus_tag=Dshi_2769
NC_009952.1	RefSeq	CDS	2931169	2931762	.	-	0	ID=cds2760;Name=YP_001534103.1;Parent=gene2806;Note=Swiss-Prot: P0AC28-Uncharacterized protein ygfA PFAM: 5-formyltetrahydrofolate cyclo-ligase TIGR02727: 5%2C10-methenyltetrahydrofolate synthetase%3B related to  5-formyltetrahydrofolate cyclo-ligase;Dbxref=Genbank:YP_001534103.1,GeneID:5713668;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534103.1;transl_table=11
NC_009952.1	RefSeq	gene	2931759	2933141	.	-	.	ID=gene2807;Name=Dshi_2770;Dbxref=GeneID:5713669;gbkey=Gene;locus_tag=Dshi_2770
NC_009952.1	RefSeq	CDS	2931759	2933141	.	-	0	ID=cds2761;Name=YP_001534104.1;Parent=gene2807;Note=TIGR00400: Mg2%2B transporter %28mgtE%29 PFAM: CBS domain containing protein%3B MgtE integral membrane region%3B MgtE intracellular region COG2239: Mg%2FCo%2FNi transporter MgtE %28contains CBS domain%29;Dbxref=Genbank:YP_001534104.1,GeneID:5713669;gbkey=CDS;product=putative magnesium transporter;protein_id=YP_001534104.1;transl_table=11
NC_009952.1	RefSeq	gene	2933279	2934565	.	+	.	ID=gene2808;Name=guaD;Dbxref=GeneID:5713670;gbkey=Gene;gene=guaD;locus_tag=Dshi_2771
NC_009952.1	RefSeq	CDS	2933279	2934565	.	+	0	ID=cds2762;Name=YP_001534105.1;Parent=gene2808;Note=Catalyzes the deamination of guanine;Dbxref=Genbank:YP_001534105.1,GeneID:5713670;gbkey=CDS;gene=guaD;product=guanine deaminase;protein_id=YP_001534105.1;transl_table=11
NC_009952.1	RefSeq	gene	2934712	2935170	.	-	.	ID=gene2809;Name=Dshi_2772;Dbxref=GeneID:5713671;gbkey=Gene;locus_tag=Dshi_2772
NC_009952.1	RefSeq	CDS	2934712	2935170	.	-	0	ID=cds2763;Name=YP_001534106.1;Parent=gene2809;Note=Swiss-Prot: PFAM: SCP-like extracellular COG2340: Uncharacterized protein with SCP%2FPR1 domains%3B related to SCP-like extracellular protein;Dbxref=Genbank:YP_001534106.1,GeneID:5713671;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534106.1;transl_table=11
NC_009952.1	RefSeq	gene	2935167	2936507	.	-	.	ID=gene2810;Name=Dshi_2773;Dbxref=GeneID:5713672;gbkey=Gene;locus_tag=Dshi_2773
NC_009952.1	RefSeq	CDS	2935167	2936507	.	-	0	ID=cds2764;Name=YP_001534107.1;Parent=gene2810;Note=catalyzes the transformation of hydroxyatrazine to N-isopropylammelide and ethylamine in the atrazine degradation pathway.;Dbxref=Genbank:YP_001534107.1,GeneID:5713672;gbkey=CDS;product=hydroxydechloroatrazine ethylaminohydrolase;protein_id=YP_001534107.1;transl_table=11
NC_009952.1	RefSeq	gene	2936504	2937325	.	-	.	ID=gene2811;Name=Dshi_2774;Dbxref=GeneID:5713673;gbkey=Gene;locus_tag=Dshi_2774
NC_009952.1	RefSeq	CDS	2936504	2937325	.	-	0	ID=cds2765;Name=YP_001534108.1;Parent=gene2811;Note=Swiss-Prot: P0ADG4-Inositol-1-monophosphatase suhB TIGRFAM: histidinol-phosphate phosphatase%2C putative PFAM: inositol monophosphatase;Dbxref=Genbank:YP_001534108.1,GeneID:5713673;gbkey=CDS;product=putative inositol-1-monophosphatase;protein_id=YP_001534108.1;transl_table=11
NC_009952.1	RefSeq	gene	2937384	2937755	.	-	.	ID=gene2812;Name=Dshi_2775;Dbxref=GeneID:5713674;gbkey=Gene;locus_tag=Dshi_2775
NC_009952.1	RefSeq	CDS	2937384	2937755	.	-	0	ID=cds2766;Name=YP_001534109.1;Parent=gene2812;Note=Swiss-Prot:Q52911-Uncharacterized HTH-type transcriptional regulator R00410 PFAM: helix-turn-helix domain protein COG1396: Predicted transcriptional regulators SM00530: Helix-turn-helix XRE-family like proteins%3B XRE family;Dbxref=Genbank:YP_001534109.1,GeneID:5713674;gbkey=CDS;product=putative transcriptional regulator;protein_id=YP_001534109.1;transl_table=11
NC_009952.1	RefSeq	gene	2938108	2939067	.	+	.	ID=gene2813;Name=Dshi_2776;Dbxref=GeneID:5713675;gbkey=Gene;locus_tag=Dshi_2776
NC_009952.1	RefSeq	CDS	2938108	2939067	.	+	0	ID=cds2767;Name=YP_001534110.1;Parent=gene2813;Note=Swiss-Prot: P12311-Alcohol dehydrogenase PFAM: Alcohol dehydrogenase zinc-binding domain protein%3B Alcohol dehydrogenase GroES domain protein;Dbxref=Genbank:YP_001534110.1,GeneID:5713675;gbkey=CDS;product=putative alcohol dehydrogenase;protein_id=YP_001534110.1;transl_table=11
NC_009952.1	RefSeq	gene	2939244	2940098	.	-	.	ID=gene2814;Name=Dshi_2777;Dbxref=GeneID:5713676;gbkey=Gene;locus_tag=Dshi_2777
NC_009952.1	RefSeq	CDS	2939244	2940098	.	-	0	ID=cds2768;Name=YP_001534111.1;Parent=gene2814;Note=Swiss-Prot:P36771-Probable HTH-type transcriptional regulator lrhA PFAM: regulatory protein LysR%3B LysR substrate-binding%3B LysR family;Dbxref=Genbank:YP_001534111.1,GeneID:5713676;gbkey=CDS;product=putative transcriptional regulator;protein_id=YP_001534111.1;transl_table=11
NC_009952.1	RefSeq	gene	2940224	2940442	.	+	.	ID=gene2815;Name=Dshi_2778;Dbxref=GeneID:5713677;gbkey=Gene;locus_tag=Dshi_2778
NC_009952.1	RefSeq	CDS	2940224	2940442	.	+	0	ID=cds2769;Name=YP_001534112.1;Parent=gene2815;Dbxref=Genbank:YP_001534112.1,GeneID:5713677;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534112.1;transl_table=11
NC_009952.1	RefSeq	gene	2940622	2941344	.	+	.	ID=gene2816;Name=Dshi_2779;Dbxref=GeneID:5713678;gbkey=Gene;locus_tag=Dshi_2779
NC_009952.1	RefSeq	CDS	2940622	2941344	.	+	0	ID=cds2770;Name=YP_001534113.1;Parent=gene2816;Note=Swiss-Prot: P0AAC4-Inner membrane protein ybhL PFAM: protein of unknown function UPF0005;Dbxref=Genbank:YP_001534113.1,GeneID:5713678;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534113.1;transl_table=11
NC_009952.1	RefSeq	gene	2941414	2941887	.	-	.	ID=gene2817;Name=Dshi_2780;Dbxref=GeneID:5713679;gbkey=Gene;locus_tag=Dshi_2780
NC_009952.1	RefSeq	CDS	2941414	2941887	.	-	0	ID=cds2771;Name=YP_001534114.1;Parent=gene2817;Dbxref=Genbank:YP_001534114.1,GeneID:5713679;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534114.1;transl_table=11
NC_009952.1	RefSeq	gene	2942214	2942381	.	-	.	ID=gene2818;Name=rpmG;Dbxref=GeneID:5713680;gbkey=Gene;gene=rpmG;locus_tag=Dshi_2781
NC_009952.1	RefSeq	CDS	2942214	2942381	.	-	0	ID=cds2772;Name=YP_001534115.1;Parent=gene2818;Note=in Escherichia coli BM108%2C a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function%3B there are paralogous genes in several bacterial genomes%2C and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31%3B the proteins in this group lack the CXXC motif;Dbxref=Genbank:YP_001534115.1,GeneID:5713680;gbkey=CDS;gene=rpmG;product=50S ribosomal protein L33;protein_id=YP_001534115.1;transl_table=11
NC_009952.1	RefSeq	gene	2942514	2943002	.	-	.	ID=gene2819;Name=Dshi_2782;Dbxref=GeneID:5713681;gbkey=Gene;locus_tag=Dshi_2782
NC_009952.1	RefSeq	CDS	2942514	2943002	.	-	0	ID=cds2773;Name=YP_001534116.1;Parent=gene2819;Dbxref=Genbank:YP_001534116.1,GeneID:5713681;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534116.1;transl_table=11
NC_009952.1	RefSeq	gene	2943475	2944113	.	-	.	ID=gene2820;Name=Dshi_2783;Dbxref=GeneID:5713683;gbkey=Gene;locus_tag=Dshi_2783
NC_009952.1	RefSeq	CDS	2943475	2944113	.	-	0	ID=cds2774;Name=YP_001534117.1;Parent=gene2820;Note=Swiss-Prot: P75820-N-acetylmuramoyl-L-alanine amidase amiD %5BPrecursor%5D PFAM: N-acetylmuramoyl-L-alanine amidase family 2%3B similar to N-acetylmuramoyl-L-alanine amidase;Dbxref=Genbank:YP_001534117.1,GeneID:5713683;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534117.1;transl_table=11
NC_009952.1	RefSeq	gene	2944167	2944769	.	-	.	ID=gene2821;Name=Dshi_2784;Dbxref=GeneID:5713684;gbkey=Gene;locus_tag=Dshi_2784
NC_009952.1	RefSeq	CDS	2944167	2944769	.	-	0	ID=cds2775;Name=YP_001534118.1;Parent=gene2821;Dbxref=Genbank:YP_001534118.1,GeneID:5713684;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534118.1;transl_table=11
NC_009952.1	RefSeq	gene	2944803	2946290	.	-	.	ID=gene2822;Name=gatA;Dbxref=GeneID:5713685;gbkey=Gene;gene=gatA;locus_tag=Dshi_2785
NC_009952.1	RefSeq	CDS	2944803	2946290	.	-	0	ID=cds2776;Name=YP_001534119.1;Parent=gene2822;Note=allows the formation of correctly charged Asn-tRNA%28Asn%29 or Gln-tRNA%28Gln%29 through the transamidation of misacylated Asp-tRNA%28Asn%29 or Glu-tRNA%28Gln%29 in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases%3B reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA%28Asn%29 or phospho-Glu-tRNA;Dbxref=Genbank:YP_001534119.1,GeneID:5713685;gbkey=CDS;gene=gatA;product=aspartyl%2Fglutamyl-tRNA amidotransferase subunit A;protein_id=YP_001534119.1;transl_table=11
NC_009952.1	RefSeq	gene	2946295	2946582	.	-	.	ID=gene2823;Name=gatC;Dbxref=GeneID:5713686;gbkey=Gene;gene=gatC;locus_tag=Dshi_2786
NC_009952.1	RefSeq	CDS	2946295	2946582	.	-	0	ID=cds2777;Name=YP_001534120.1;Parent=gene2823;Note=allows the formation of correctly charged Asn-tRNA%28Asn%29 or Gln-tRNA%28Gln%29 through the transamidation of misacylated Asp-tRNA%28Asn%29 or Glu-tRNA%28Gln%29 in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases%3B reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA%28Asn%29 or phospho-Glu-tRNA%3B some Mycoplasma proteins contain an N-terminal fusion to an unknown domain;Dbxref=Genbank:YP_001534120.1,GeneID:5713686;gbkey=CDS;gene=gatC;product=aspartyl%2Fglutamyl-tRNA amidotransferase subunit C;protein_id=YP_001534120.1;transl_table=11
NC_009952.1	RefSeq	gene	2946619	2947284	.	-	.	ID=gene2824;Name=Dshi_2787;Dbxref=GeneID:5713687;gbkey=Gene;locus_tag=Dshi_2787
NC_009952.1	RefSeq	CDS	2946619	2947284	.	-	0	ID=cds2778;Name=YP_001534121.1;Parent=gene2824;Dbxref=Genbank:YP_001534121.1,GeneID:5713687;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534121.1;transl_table=11
NC_009952.1	RefSeq	gene	2947338	2948030	.	+	.	ID=gene2825;Name=Dshi_2788;Dbxref=GeneID:5713688;gbkey=Gene;locus_tag=Dshi_2788
NC_009952.1	RefSeq	CDS	2947338	2948030	.	+	0	ID=cds2779;Name=YP_001534122.1;Parent=gene2825;Note=Swiss-Prot:Q98M91- UPF0173 metal-dependent hydrolase PFAM:beta-lactamase domain protein COG2220: Predicted Zn-dependent hydrolases of the beta-lactamase fold;Dbxref=Genbank:YP_001534122.1,GeneID:5713688;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534122.1;transl_table=11
NC_009952.1	RefSeq	gene	2948196	2948651	.	-	.	ID=gene2826;Name=Dshi_2789;Dbxref=GeneID:5713689;gbkey=Gene;locus_tag=Dshi_2789
NC_009952.1	RefSeq	CDS	2948196	2948651	.	-	0	ID=cds2780;Name=YP_001534123.1;Parent=gene2826;Note=Swiss-Prot: P68398- tRNA-specific adenosine deaminase tadA PFAM: CMP%2FdCMP deaminase zinc-binding PTHR11079: cytidine %2F deoxycytidylate deaminase-related%3B related to cytidine %2F deoxycytidylate deaminase;Dbxref=Genbank:YP_001534123.1,GeneID:5713689;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534123.1;transl_table=11
NC_009952.1	RefSeq	gene	2948736	2949704	.	+	.	ID=gene2827;Name=Dshi_2790;Dbxref=GeneID:5713690;gbkey=Gene;locus_tag=Dshi_2790
NC_009952.1	RefSeq	CDS	2948736	2949704	.	+	0	ID=cds2781;Name=YP_001534124.1;Parent=gene2827;Note=Swiss-Prot: Q4UL59-Uncharacterized RNA pseudouridine synthase RF_0863 TIGR00093: pseudouridine synthase family COG1187:16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases;Dbxref=Genbank:YP_001534124.1,GeneID:5713690;gbkey=CDS;product=RNA pseudouridine synthase;protein_id=YP_001534124.1;transl_table=11
NC_009952.1	RefSeq	gene	2950066	2950944	.	+	.	ID=gene2828;Name=Dshi_2791;Dbxref=GeneID:5713691;gbkey=Gene;locus_tag=Dshi_2791
NC_009952.1	RefSeq	CDS	2950066	2950944	.	+	0	ID=cds2782;Name=YP_001534125.1;Parent=gene2828;Note=KEGG: sil:SPO2985 hypothetical protein;Dbxref=Genbank:YP_001534125.1,GeneID:5713691;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534125.1;transl_table=11
NC_009952.1	RefSeq	gene	2950980	2952173	.	+	.	ID=gene2829;Name=Dshi_2792;Dbxref=GeneID:5713692;gbkey=Gene;locus_tag=Dshi_2792
NC_009952.1	RefSeq	CDS	2950980	2952173	.	+	0	ID=cds2783;Name=YP_001534126.1;Parent=gene2829;Note=PFAM: toxic anion resistance family protein Swiss-Prot: Q2YY12- TelA-like protein SAB1262 COG3853: Uncharacterized protein involved in tellurite resistance%3B related to toxic anion resistance protein %28TelA%29;Dbxref=Genbank:YP_001534126.1,GeneID:5713692;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534126.1;transl_table=11
NC_009952.1	RefSeq	gene	2952170	2953117	.	+	.	ID=gene2830;Name=Dshi_2793;Dbxref=GeneID:5713693;gbkey=Gene;locus_tag=Dshi_2793
NC_009952.1	RefSeq	CDS	2952170	2953117	.	+	0	ID=cds2784;Name=YP_001534127.1;Parent=gene2830;Dbxref=Genbank:YP_001534127.1,GeneID:5713693;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534127.1;transl_table=11
NC_009952.1	RefSeq	gene	2953140	2954270	.	+	.	ID=gene2831;Name=Dshi_2794;Dbxref=GeneID:5713694;gbkey=Gene;locus_tag=Dshi_2794
NC_009952.1	RefSeq	CDS	2953140	2954270	.	+	0	ID=cds2785;Name=YP_001534128.1;Parent=gene2831;Dbxref=Genbank:YP_001534128.1,GeneID:5713694;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534128.1;transl_table=11
NC_009952.1	RefSeq	gene	2954277	2955392	.	+	.	ID=gene2832;Name=Dshi_2795;Dbxref=GeneID:5713695;gbkey=Gene;locus_tag=Dshi_2795
NC_009952.1	RefSeq	CDS	2954277	2955392	.	+	0	ID=cds2786;Name=YP_001534129.1;Parent=gene2832;Dbxref=Genbank:YP_001534129.1,GeneID:5713695;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534129.1;transl_table=11
NC_009952.1	RefSeq	gene	2955399	2955857	.	-	.	ID=gene2833;Name=Dshi_2796;Dbxref=GeneID:5713696;gbkey=Gene;locus_tag=Dshi_2796
NC_009952.1	RefSeq	CDS	2955399	2955857	.	-	0	ID=cds2787;Name=YP_001534130.1;Parent=gene2833;Note=PFAM: heat shock protein Hsp20 SSF49764: HSP20-like chaperones superfamily%3B Hsp20;Dbxref=Genbank:YP_001534130.1,GeneID:5713696;gbkey=CDS;product=heat shock protein;protein_id=YP_001534130.1;transl_table=11
NC_009952.1	RefSeq	gene	2955983	2956909	.	+	.	ID=gene2834;Name=Dshi_2797;Dbxref=GeneID:5713697;gbkey=Gene;locus_tag=Dshi_2797
NC_009952.1	RefSeq	CDS	2955983	2956909	.	+	0	ID=cds2788;Name=YP_001534131.1;Parent=gene2834;Note=PFAM: PfkB domain protein COG0524: Sugar kinases%2C ribokinase family PTHR10584: sugar kinase related%3B pfkB family;Dbxref=Genbank:YP_001534131.1,GeneID:5713697;gbkey=CDS;product=carbohydrate kinase;protein_id=YP_001534131.1;transl_table=11
NC_009952.1	RefSeq	gene	2956906	2957343	.	+	.	ID=gene2835;Name=dtd;Dbxref=GeneID:5713698;gbkey=Gene;gene=dtd;locus_tag=Dshi_2798
NC_009952.1	RefSeq	CDS	2956906	2957343	.	+	0	ID=cds2789;Name=YP_001534132.1;Parent=gene2835;Note=hydrolyzes D-tyrosyl-tRNA%28Tyr%29 into D-tyrosine and free tRNA%28Tyr%29%3B possible defense mechanism against a harmful effect of D-tyrosine;Dbxref=Genbank:YP_001534132.1,GeneID:5713698;gbkey=CDS;gene=dtd;product=D-tyrosyl-tRNA%28Tyr%29 deacylase;protein_id=YP_001534132.1;transl_table=11
NC_009952.1	RefSeq	gene	2957464	2958732	.	-	.	ID=gene2836;Name=fccB;Dbxref=GeneID:5713699;gbkey=Gene;gene=fccB;locus_tag=Dshi_2799
NC_009952.1	RefSeq	CDS	2957464	2958732	.	-	0	ID=cds2790;Name=YP_001534133.1;Parent=gene2836;Note=Swiss-Prot: Q06530- Sulfide dehydrogenase %5Bflavocytochrome c%5D flavoprotein chain %5BPrecursor%5D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase%3B Flavocytochrome c sulphide dehydrogenase flavin-binding;Dbxref=Genbank:YP_001534133.1,GeneID:5713699;gbkey=CDS;gene=fccB;product=sulfide dehydrogenase %5Bflavocytochrome c%5D flavoprotein chain;protein_id=YP_001534133.1;transl_table=11
NC_009952.1	RefSeq	gene	2958766	2959473	.	-	.	ID=gene2837;Name=Dshi_2800;Dbxref=GeneID:5713700;gbkey=Gene;locus_tag=Dshi_2800
NC_009952.1	RefSeq	CDS	2958766	2959473	.	-	0	ID=cds2791;Name=YP_001534134.1;Parent=gene2837;Note=Swiss-Prot: P00082-Cytochrome c2 PFAM: cytochrome c class I;Dbxref=Genbank:YP_001534134.1,GeneID:5713700;gbkey=CDS;product=cytochrome c;protein_id=YP_001534134.1;transl_table=11
NC_009952.1	RefSeq	gene	2959478	2960506	.	-	.	ID=gene2838;Name=Dshi_2801;Dbxref=GeneID:5713701;gbkey=Gene;locus_tag=Dshi_2801
NC_009952.1	RefSeq	CDS	2959478	2960506	.	-	0	ID=cds2792;Name=YP_001534135.1;Parent=gene2838;Note=Swiss-Prot: P00081-Cytochrome c2 PFAM: cytochrome c class I;Dbxref=Genbank:YP_001534135.1,GeneID:5713701;gbkey=CDS;product=cytochrome c;protein_id=YP_001534135.1;transl_table=11
NC_009952.1	RefSeq	gene	2960490	2961767	.	-	.	ID=gene2839;Name=Dshi_2802;Dbxref=GeneID:5713702;gbkey=Gene;locus_tag=Dshi_2802
NC_009952.1	RefSeq	CDS	2960490	2961767	.	-	0	ID=cds2793;Name=YP_001534136.1;Parent=gene2839;Note=Swiss-Prot: PFAM: oxidoreductase molybdopterin binding%3B Mo-co oxidoreductase dimerisation domain%3B molybdopterin binding;Dbxref=Genbank:YP_001534136.1,GeneID:5713702;gbkey=CDS;product=oxidoreductase;protein_id=YP_001534136.1;transl_table=11
NC_009952.1	RefSeq	gene	2961826	2963520	.	-	.	ID=gene2840;Name=Dshi_2803;Dbxref=GeneID:5713703;gbkey=Gene;locus_tag=Dshi_2803
NC_009952.1	RefSeq	CDS	2961826	2963520	.	-	0	ID=cds2794;Name=YP_001534137.1;Parent=gene2840;Note=PFAM: metallophosphoesterase%3B 5-Nucleotidase domain protein Swiss-Prot:P07024-Protein ushA %5BPrecursor%5D COG0737: 5-nucleotidase%2F2%2C3-cyclic phosphodiesterase and related esterases;Dbxref=Genbank:YP_001534137.1,GeneID:5713703;gbkey=CDS;product=putative 5%27-nucleotidase;protein_id=YP_001534137.1;transl_table=11
NC_009952.1	RefSeq	gene	2963655	2964509	.	-	.	ID=gene2841;Name=soxA1;Dbxref=GeneID:5713704;gbkey=Gene;gene=soxA1;locus_tag=Dshi_2804
NC_009952.1	RefSeq	CDS	2963655	2964509	.	-	0	ID=cds2795;Name=YP_001534138.1;Parent=gene2841;Note=Swiss-Prot: Q939U1-Diheme cytochrome c GENE3D %2F SSF46626: Cytochrome c%2C monohaem PS51008: Multihaem cytochrome;Dbxref=Genbank:YP_001534138.1,GeneID:5713704;gbkey=CDS;gene=soxA1;product=diheme cytochrome c;protein_id=YP_001534138.1;transl_table=11
NC_009952.1	RefSeq	gene	2964559	2964888	.	-	.	ID=gene2842;Name=Dshi_2805;Dbxref=GeneID:5713705;gbkey=Gene;locus_tag=Dshi_2805
NC_009952.1	RefSeq	CDS	2964559	2964888	.	-	0	ID=cds2796;Name=YP_001534139.1;Parent=gene2842;Note=PFAM: Sulphur oxidation protein SoxZ Swiss-Prot: Q939U2- SoxZ %5Bpredicted%5D%3B soxZ;Dbxref=Genbank:YP_001534139.1,GeneID:5713705;gbkey=CDS;product=putative sulfur oxidation protein;protein_id=YP_001534139.1;transl_table=11
NC_009952.1	RefSeq	gene	2964907	2965323	.	-	.	ID=gene2843;Name=Dshi_2806;Dbxref=GeneID:5713706;gbkey=Gene;locus_tag=Dshi_2806
NC_009952.1	RefSeq	CDS	2964907	2965323	.	-	0	ID=cds2797;Name=YP_001534140.1;Parent=gene2843;Note=with SoxZ catalyzes the oxidation of sulfur compounds;Dbxref=Genbank:YP_001534140.1,GeneID:5713706;gbkey=CDS;product=sulfur oxidation protein SoxY;protein_id=YP_001534140.1;transl_table=11
NC_009952.1	RefSeq	gene	2965359	2965841	.	-	.	ID=gene2844;Name=Dshi_2807;Dbxref=GeneID:5713707;gbkey=Gene;locus_tag=Dshi_2807
NC_009952.1	RefSeq	CDS	2965359	2965841	.	-	0	ID=cds2798;Name=YP_001534141.1;Parent=gene2844;Note=PFAM: cytochrome c SSF46626 %2F PS51007 %2F G3DSA:1.10.760.10: Cytochrome c%2C monohaem Swiss-Prot: A3W521- Monoheme cytochrome c SoxX %5Bpredicted%5D%3B monohaem;Dbxref=Genbank:YP_001534141.1,GeneID:5713707;gbkey=CDS;product=cytochrome c;protein_id=YP_001534141.1;transl_table=11
NC_009952.1	RefSeq	gene	2965958	2966524	.	-	.	ID=gene2845;Name=Dshi_2808;Dbxref=GeneID:5710659;gbkey=Gene;locus_tag=Dshi_2808
NC_009952.1	RefSeq	CDS	2965958	2966524	.	-	0	ID=cds2799;Name=YP_001534142.1;Parent=gene2845;Note=SSF52833: Thioredoxin-like superfamily COG2143: Thioredoxin-related protein Swiss-Prot: Q16A50-Thioredoxin SoxW %5Bpredicted%5D;Dbxref=Genbank:YP_001534142.1,GeneID:5710659;gbkey=CDS;product=putative thioredoxin;protein_id=YP_001534142.1;transl_table=11
NC_009952.1	RefSeq	gene	2966552	2967286	.	-	.	ID=gene2846;Name=Dshi_2809;Dbxref=GeneID:5710660;gbkey=Gene;locus_tag=Dshi_2809
NC_009952.1	RefSeq	CDS	2966552	2967286	.	-	0	ID=cds2800;Name=YP_001534143.1;Parent=gene2846;Note=PFAM: cytochrome c biogenesis protein transmembrane region COG0785: Cytochrome c biogenesis protein%3B transmembrane region;Dbxref=Genbank:YP_001534143.1,GeneID:5710660;gbkey=CDS;product=cytochrome c biogenesis protein;protein_id=YP_001534143.1;transl_table=11
NC_009952.1	RefSeq	gene	2967368	2967775	.	+	.	ID=gene2847;Name=Dshi_2810;Dbxref=GeneID:5710661;gbkey=Gene;locus_tag=Dshi_2810
NC_009952.1	RefSeq	CDS	2967368	2967775	.	+	0	ID=cds2801;Name=YP_001534144.1;Parent=gene2847;Dbxref=Genbank:YP_001534144.1,GeneID:5710661;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534144.1;transl_table=11
NC_009952.1	RefSeq	gene	2967772	2968284	.	+	.	ID=gene2848;Name=Dshi_2811;Dbxref=GeneID:5710662;gbkey=Gene;locus_tag=Dshi_2811
NC_009952.1	RefSeq	CDS	2967772	2968284	.	+	0	ID=cds2802;Name=YP_001534145.1;Parent=gene2848;Note=PFAM: protein of unknown function DUF336;Dbxref=Genbank:YP_001534145.1,GeneID:5710662;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534145.1;transl_table=11
NC_009952.1	RefSeq	gene	2968306	2968641	.	+	.	ID=gene2849;Name=Dshi_2812;Dbxref=GeneID:5710663;gbkey=Gene;locus_tag=Dshi_2812
NC_009952.1	RefSeq	CDS	2968306	2968641	.	+	0	ID=cds2803;Name=YP_001534146.1;Parent=gene2849;Note=PFAM: regulatory protein ArsR%3B ArsR family;Dbxref=Genbank:YP_001534146.1,GeneID:5710663;gbkey=CDS;product=transcriptional regulator;protein_id=YP_001534146.1;transl_table=11
NC_009952.1	RefSeq	gene	2968662	2969750	.	+	.	ID=gene2850;Name=Dshi_2813;Dbxref=GeneID:5710664;gbkey=Gene;locus_tag=Dshi_2813
NC_009952.1	RefSeq	CDS	2968662	2969750	.	+	0	ID=cds2804;Name=YP_001534147.1;Parent=gene2850;Note=PFAM: protein of unknown function DUF395 YeeE%2FYedE;Dbxref=Genbank:YP_001534147.1,GeneID:5710664;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534147.1;transl_table=11
NC_009952.1	RefSeq	gene	2969763	2970803	.	-	.	ID=gene2851;Name=Dshi_2814;Dbxref=GeneID:5710665;gbkey=Gene;locus_tag=Dshi_2814
NC_009952.1	RefSeq	CDS	2969763	2970803	.	-	0	ID=cds2805;Name=YP_001534148.1;Parent=gene2851;Note=TIGRFAM: diguanylate cyclase %28GGDEF%29 domain PFAM: GGDEF domain containing protein;Dbxref=Genbank:YP_001534148.1,GeneID:5710665;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534148.1;transl_table=11
NC_009952.1	RefSeq	gene	2970800	2971384	.	-	.	ID=gene2852;Name=Dshi_2815;Dbxref=GeneID:5710666;gbkey=Gene;locus_tag=Dshi_2815
NC_009952.1	RefSeq	CDS	2970800	2971384	.	-	0	ID=cds2806;Name=YP_001534149.1;Parent=gene2852;Note=PFAM: Heme NO binding domain protein;Dbxref=Genbank:YP_001534149.1,GeneID:5710666;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534149.1;transl_table=11
NC_009952.1	RefSeq	gene	2971486	2973201	.	-	.	ID=gene2853;Name=Dshi_2816;Dbxref=GeneID:5710667;gbkey=Gene;locus_tag=Dshi_2816
NC_009952.1	RefSeq	CDS	2971486	2973201	.	-	0	ID=cds2807;Name=YP_001534150.1;Parent=gene2853;Dbxref=Genbank:YP_001534150.1,GeneID:5710667;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534150.1;transl_table=11
NC_009952.1	RefSeq	gene	2973240	2974799	.	-	.	ID=gene2854;Name=Dshi_2817;Dbxref=GeneID:5710668;gbkey=Gene;locus_tag=Dshi_2817
NC_009952.1	RefSeq	CDS	2973240	2974799	.	-	0	ID=cds2808;Name=YP_001534151.1;Parent=gene2854;Note=Swiss-Prot: PFAM: trimethylamine methyltransferase PIRSF037567: trimethylamine methyltransferase%2C MttB type;Dbxref=Genbank:YP_001534151.1,GeneID:5710668;gbkey=CDS;product=trimethylamine methyltransferase;protein_id=YP_001534151.1;transl_table=11
NC_009952.1	RefSeq	gene	2974910	2975632	.	-	.	ID=gene2855;Name=Dshi_2818;Dbxref=GeneID:5710669;gbkey=Gene;locus_tag=Dshi_2818
NC_009952.1	RefSeq	CDS	2974910	2975632	.	-	0	ID=cds2809;Name=YP_001534152.1;Parent=gene2855;Note=Swiss-Prot: P32662-Phosphoglycolate phosphatase TIGRFAM: HAD-superfamily hydrolase%2C subfamily IA%2C variant 3%3B HAD-superfamily hydrolase%2C subfamily IA%2C variant 1 PFAM: Haloacid dehalogenase domain protein hydrolase;Dbxref=Genbank:YP_001534152.1,GeneID:5710669;gbkey=CDS;product=HAD-like hydrolase;protein_id=YP_001534152.1;transl_table=11
NC_009952.1	RefSeq	gene	2976015	2976293	.	-	.	ID=gene2856;Name=Dshi_2819;Dbxref=GeneID:5710670;gbkey=Gene;locus_tag=Dshi_2819
NC_009952.1	RefSeq	CDS	2976015	2976293	.	-	0	ID=cds2810;Name=YP_001534153.1;Parent=gene2856;Note=KEGG: sil:SPO2752 hypothetical protein;Dbxref=Genbank:YP_001534153.1,GeneID:5710670;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534153.1;transl_table=11
NC_009952.1	RefSeq	gene	2976378	2977766	.	+	.	ID=gene2857;Name=Dshi_2820;Dbxref=GeneID:5710671;gbkey=Gene;locus_tag=Dshi_2820
NC_009952.1	RefSeq	CDS	2976378	2977766	.	+	0	ID=cds2811;Name=YP_001534154.1;Parent=gene2857;Note=Swiss-Prot: Q9A5I5-Response regulator pleD %28part of a signal transduction pathway controlling cell differentiation in the swarmer-to-stalked cell transition%29 TIGR00254: diguanylate cyclase %28GGDEF%29 domain PFAM: GGDEF domain containing protein%3B response regulator receiver;Dbxref=Genbank:YP_001534154.1,GeneID:5710671;gbkey=CDS;product=response regulator;protein_id=YP_001534154.1;transl_table=11
NC_009952.1	RefSeq	gene	2977988	2978386	.	+	.	ID=gene2858;Name=Dshi_2821;Dbxref=GeneID:5710672;gbkey=Gene;locus_tag=Dshi_2821
NC_009952.1	RefSeq	CDS	2977988	2978386	.	+	0	ID=cds2812;Name=YP_001534155.1;Parent=gene2858;Note=PFAM: protein of unknown function DUF983 COG5349: Uncharacterized protein conserved in bacteria;Dbxref=Genbank:YP_001534155.1,GeneID:5710672;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534155.1;transl_table=11
NC_009952.1	RefSeq	gene	2978410	2979087	.	+	.	ID=gene2859;Name=Dshi_2822;Dbxref=GeneID:5710673;gbkey=Gene;locus_tag=Dshi_2822
NC_009952.1	RefSeq	CDS	2978410	2979087	.	+	0	ID=cds2813;Name=YP_001534156.1;Parent=gene2859;Note=Swiss-Prot: PFAM: NUDIX hydrolase;Dbxref=Genbank:YP_001534156.1,GeneID:5710673;gbkey=CDS;product=NUDIX hydrolase;protein_id=YP_001534156.1;transl_table=11
NC_009952.1	RefSeq	gene	2979098	2980144	.	-	.	ID=gene2860;Name=Dshi_2823;Dbxref=GeneID:5710674;gbkey=Gene;locus_tag=Dshi_2823
NC_009952.1	RefSeq	CDS	2979098	2980144	.	-	0	ID=cds2814;Name=YP_001534157.1;Parent=gene2860;Note=PFAM: aldo%2Fketo reductase IPR001395: Aldo%2Fketo reductase;Dbxref=Genbank:YP_001534157.1,GeneID:5710674;gbkey=CDS;product=aldo%2Fketo reductase;protein_id=YP_001534157.1;transl_table=11
NC_009952.1	RefSeq	gene	2980248	2981147	.	+	.	ID=gene2861;Name=Dshi_2824;Dbxref=GeneID:5710675;gbkey=Gene;locus_tag=Dshi_2824
NC_009952.1	RefSeq	CDS	2980248	2981147	.	+	0	ID=cds2815;Name=YP_001534158.1;Parent=gene2861;Dbxref=Genbank:YP_001534158.1,GeneID:5710675;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534158.1;transl_table=11
NC_009952.1	RefSeq	gene	2981199	2982374	.	+	.	ID=gene2862;Name=Dshi_2825;Dbxref=GeneID:5710676;gbkey=Gene;locus_tag=Dshi_2825
NC_009952.1	RefSeq	CDS	2981199	2982374	.	+	0	ID=cds2816;Name=YP_001534159.1;Parent=gene2862;Note=PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding COG1250: 3-hydroxyacyl-CoA dehydrogenase%3B related to  3-hydroxyacyl-CoA dehydrogenase;Dbxref=Genbank:YP_001534159.1,GeneID:5710676;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534159.1;transl_table=11
NC_009952.1	RefSeq	gene	2982421	2983074	.	+	.	ID=gene2863;Name=Dshi_2826;Dbxref=GeneID:5710677;gbkey=Gene;locus_tag=Dshi_2826
NC_009952.1	RefSeq	CDS	2982421	2983074	.	+	0	ID=cds2817;Name=YP_001534160.1;Parent=gene2863;Note=KEGG: rde:RD1_2519 hypothetical protein COG4544: Uncharacterized conserved protein;Dbxref=Genbank:YP_001534160.1,GeneID:5710677;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534160.1;transl_table=11
NC_009952.1	RefSeq	gene	2983112	2983675	.	+	.	ID=gene2864;Name=Dshi_2827;Dbxref=GeneID:5710678;gbkey=Gene;locus_tag=Dshi_2827
NC_009952.1	RefSeq	CDS	2983112	2983675	.	+	0	ID=cds2818;Name=YP_001534161.1;Parent=gene2864;Note=Swiss-Prot: P0A8X2-Protein yceI %5BPrecursor%5D PFAM: YceI family protein COG2353: Uncharacterized conserved protein%3B similar to protein yceI %5BPrecursor%5D;Dbxref=Genbank:YP_001534161.1,GeneID:5710678;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534161.1;transl_table=11
NC_009952.1	RefSeq	gene	2983768	2985282	.	+	.	ID=gene2865;Name=Dshi_2828;Dbxref=GeneID:5710679;gbkey=Gene;locus_tag=Dshi_2828
NC_009952.1	RefSeq	CDS	2983768	2985282	.	+	0	ID=cds2819;Name=YP_001534162.1;Parent=gene2865;Note=Swiss-Prot: TIGRFAM: Mg chelatase%2C subunit ChlI PFAM: magnesium chelatase ChlI subunit%3B ATPase associated with various cellular activities AAA_5 SMART: AAA ATPase%3B related to Mg chelatase;Dbxref=Genbank:YP_001534162.1,GeneID:5710679;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534162.1;transl_table=11
NC_009952.1	RefSeq	gene	2985279	2986226	.	-	.	ID=gene2866;Name=gshB;Dbxref=GeneID:5710680;gbkey=Gene;gene=gshB;locus_tag=Dshi_2829
NC_009952.1	RefSeq	CDS	2985279	2986226	.	-	0	ID=cds2820;Name=YP_001534163.1;Parent=gene2866;Note=catalyzes the second step in the glutathione biosynthesis pathway%2C where it synthesizes ATP %2B gamma-L-glutamyl-L-cysteine %2B glycine %3D ADP %2B phosphate %2B glutathione;Dbxref=Genbank:YP_001534163.1,GeneID:5710680;gbkey=CDS;gene=gshB;product=glutathione synthetase;protein_id=YP_001534163.1;transl_table=11
NC_009952.1	RefSeq	gene	2986303	2986707	.	-	.	ID=gene2867;Name=Dshi_2830;Dbxref=GeneID:5710681;gbkey=Gene;locus_tag=Dshi_2830
NC_009952.1	RefSeq	CDS	2986303	2986707	.	-	0	ID=cds2821;Name=YP_001534164.1;Parent=gene2867;Note=TIGR00252 conserved hypothetical protein PFAM: protein of unknown function UPF0102;Dbxref=Genbank:YP_001534164.1,GeneID:5710681;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534164.1;transl_table=11
NC_009952.1	RefSeq	gene	2986732	2987586	.	-	.	ID=gene2868;Name=Dshi_2831;Dbxref=GeneID:5710682;gbkey=Gene;locus_tag=Dshi_2831
NC_009952.1	RefSeq	CDS	2986732	2987586	.	-	0	ID=cds2822;Name=YP_001534165.1;Parent=gene2868;Note=Swiss-Prot: P67087-UPF0011 protein yraL TIGR00096: conserved hypothetical protein TIGR00096 PFAM: Uroporphyrin-III C%2Ftetrapyrrole %28Corrin%2FPorphyrin%29 methyltransferase;Dbxref=Genbank:YP_001534165.1,GeneID:5710682;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534165.1;transl_table=11
NC_009952.1	RefSeq	gene	2987697	2988881	.	+	.	ID=gene2869;Name=Dshi_2832;Dbxref=GeneID:5710683;gbkey=Gene;locus_tag=Dshi_2832
NC_009952.1	RefSeq	CDS	2987697	2988881	.	+	0	ID=cds2823;Name=YP_001534166.1;Parent=gene2869;Note=SSF53822: Periplasmic binding protein-like I superfamily PS51257: Prokaryotic membrane lipoprotein lipid attachment site profile;Dbxref=Genbank:YP_001534166.1,GeneID:5710683;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534166.1;transl_table=11
NC_009952.1	RefSeq	gene	2988886	2991717	.	+	.	ID=gene2870;Name=glnD;Dbxref=GeneID:5710684;gbkey=Gene;gene=glnD;locus_tag=Dshi_2833
NC_009952.1	RefSeq	CDS	2988886	2991717	.	+	0	ID=cds2824;Name=YP_001534167.1;Parent=gene2870;Note=catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein;Dbxref=Genbank:YP_001534167.1,GeneID:5710684;gbkey=CDS;gene=glnD;product=PII uridylyl-transferase;protein_id=YP_001534167.1;transl_table=11
NC_009952.1	RefSeq	gene	2991755	2993359	.	+	.	ID=gene2871;Name=Dshi_2834;Dbxref=GeneID:5710685;gbkey=Gene;locus_tag=Dshi_2834
NC_009952.1	RefSeq	CDS	2991755	2993359	.	+	0	ID=cds2825;Name=YP_001534168.1;Parent=gene2871;Note=Swiss-Prot: O05467-Virulence factor mviN homolog TIGRFAM: integral membrane protein MviN PFAM: virulence factor MVIN family protein COG072: Uncharacterized membrane protein%2C putative virulence factor%3B mviN homolog;Dbxref=Genbank:YP_001534168.1,GeneID:5710685;gbkey=CDS;product=putative virulence factor;protein_id=YP_001534168.1;transl_table=11
NC_009952.1	RefSeq	gene	2993548	2994231	.	-	.	ID=gene2872;Name=Dshi_2835;Dbxref=GeneID:5710686;gbkey=Gene;locus_tag=Dshi_2835
NC_009952.1	RefSeq	CDS	2993548	2994231	.	-	0	ID=cds2826;Name=YP_001534169.1;Parent=gene2872;Note=PFAM: Rhomboid family protein KEGG: sit:TM1040_0444 rhomboid-like protein COG0705: Uncharacterized membrane protein %28homolog of Drosophila rhomboid%29%3B related to rhomboid family protein;Dbxref=Genbank:YP_001534169.1,GeneID:5710686;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534169.1;transl_table=11
NC_009952.1	RefSeq	gene	2994331	2995356	.	+	.	ID=gene2873;Name=trpS;Dbxref=GeneID:5710687;gbkey=Gene;gene=trpS;locus_tag=Dshi_2836
NC_009952.1	RefSeq	CDS	2994331	2995356	.	+	0	ID=cds2827;Name=YP_001534170.1;Parent=gene2873;Note=catalyzes a two-step reaction%2C first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA;Dbxref=Genbank:YP_001534170.1,GeneID:5710687;gbkey=CDS;gene=trpS;product=tryptophanyl-tRNA synthetase;protein_id=YP_001534170.1;transl_table=11
NC_009952.1	RefSeq	gene	2995862	2996722	.	+	.	ID=gene2874;Name=Dshi_2837;Dbxref=GeneID:5710688;gbkey=Gene;locus_tag=Dshi_2837
NC_009952.1	RefSeq	CDS	2995862	2996722	.	+	0	ID=cds2828;Name=YP_001534171.1;Parent=gene2874;Note=Swiss-Prot: P0AB80-Branched-chain-amino-acid aminotransferase PFAM: aminotransferase class IV%3B class IV;Dbxref=Genbank:YP_001534171.1,GeneID:5710688;gbkey=CDS;product=aminotransferase;protein_id=YP_001534171.1;transl_table=11
NC_009952.1	RefSeq	gene	2996802	2997257	.	+	.	ID=gene2875;Name=Dshi_2838;Dbxref=GeneID:5710689;gbkey=Gene;locus_tag=Dshi_2838
NC_009952.1	RefSeq	CDS	2996802	2997257	.	+	0	ID=cds2829;Name=YP_001534172.1;Parent=gene2875;Note=PFAM: UspA domain protein COG0589: Universal stress protein UspA and related nucleotide-binding proteins%3B related to universal stress protein;Dbxref=Genbank:YP_001534172.1,GeneID:5710689;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534172.1;transl_table=11
NC_009952.1	RefSeq	gene	2997347	2997910	.	+	.	ID=gene2876;Name=Dshi_2839;Dbxref=GeneID:5710690;gbkey=Gene;locus_tag=Dshi_2839
NC_009952.1	RefSeq	CDS	2997347	2997910	.	+	0	ID=cds2830;Name=YP_001534173.1;Parent=gene2876;Note=PFAM: nitrogen-fixing NifU domain protein%3B Scaffold protein Nfu%2FNifU Swiss-Prot: P33179-Nitrogen fixation protein nifU %5BFragment%5D %28inferred from homology%29%3B related to nitrogen fixation protein;Dbxref=Genbank:YP_001534173.1,GeneID:5710690;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534173.1;transl_table=11
NC_009952.1	RefSeq	gene	2997915	2998571	.	+	.	ID=gene2877;Name=Dshi_2840;Dbxref=GeneID:5710691;gbkey=Gene;locus_tag=Dshi_2840
NC_009952.1	RefSeq	CDS	2997915	2998571	.	+	0	ID=cds2831;Name=YP_001534174.1;Parent=gene2877;Note=PFAM: peptidase M22 glycoprotease%3B glycoprotease;Dbxref=Genbank:YP_001534174.1,GeneID:5710691;gbkey=CDS;product=peptidase M22;protein_id=YP_001534174.1;transl_table=11
NC_009952.1	RefSeq	gene	2998568	2998987	.	+	.	ID=gene2878;Name=Dshi_2841;Dbxref=GeneID:5710692;gbkey=Gene;locus_tag=Dshi_2841
NC_009952.1	RefSeq	CDS	2998568	2998987	.	+	0	ID=cds2832;Name=YP_001534175.1;Parent=gene2878;Note=TIGRFAM: ribosomal-protein-alanine acetyltransferase Swiss-Prot: P0A947-Ribosomal-protein-alanine acetyltransferase %5Binferred from homology%5D PFAM: GCN5-related N-acetyltransferase;Dbxref=Genbank:YP_001534175.1,GeneID:5710692;gbkey=CDS;product=putative ribosomal-protein-alanine acetyltransferase;protein_id=YP_001534175.1;transl_table=11
NC_009952.1	RefSeq	gene	2999169	3000158	.	+	.	ID=gene2879;Name=Dshi_2842;Dbxref=GeneID:5710693;gbkey=Gene;locus_tag=Dshi_2842
NC_009952.1	RefSeq	CDS	2999169	3000158	.	+	0	ID=cds2833;Name=YP_001534176.1;Parent=gene2879;Note=PFAM: basic membrane lipoprotein SSF53822: Periplasmic binding protein-like I superfamily;Dbxref=Genbank:YP_001534176.1,GeneID:5710693;gbkey=CDS;product=putative lipoprotein;protein_id=YP_001534176.1;transl_table=11
NC_009952.1	RefSeq	gene	3000182	3001828	.	+	.	ID=gene2880;Name=rbsA2;Dbxref=GeneID:5710694;gbkey=Gene;gene=rbsA2;locus_tag=Dshi_2843
NC_009952.1	RefSeq	CDS	3000182	3001828	.	+	0	ID=cds2834;Name=YP_001534177.1;Parent=gene2880;Note=Swiss-Prot: P04983-Ribose import ATP-binding protein rbsA;Dbxref=Genbank:YP_001534177.1,GeneID:5710694;gbkey=CDS;gene=rbsA2;product=ribose import ATP-binding protein;protein_id=YP_001534177.1;transl_table=11
NC_009952.1	RefSeq	gene	3001828	3002946	.	+	.	ID=gene2881;Name=rbsA2;Dbxref=GeneID:5710695;gbkey=Gene;gene=rbsA2;locus_tag=Dshi_2844
NC_009952.1	RefSeq	CDS	3001828	3002946	.	+	0	ID=cds2835;Name=YP_001534178.1;Parent=gene2881;Note=Swiss-Prot: P0AGI1-Ribose transport system permease protein rbsC PFAM: inner-membrane translocator%3B similar to ribose transport system permease protein;Dbxref=Genbank:YP_001534178.1,GeneID:5710695;gbkey=CDS;product=integral inner-membrane protein;protein_id=YP_001534178.1;transl_table=11
NC_009952.1	RefSeq	gene	3002943	3003572	.	+	.	ID=gene2882;Name=Dshi_2845;Dbxref=GeneID:5710696;gbkey=Gene;locus_tag=Dshi_2845
NC_009952.1	RefSeq	CDS	3002943	3003572	.	+	0	ID=cds2836;Name=YP_001534179.1;Parent=gene2882;Note=PFAM: Lysine exporter protein %28LYSE%2FYGGA%29 Swiss-Prot: P75693-Uncharacterized membrane protein yahN%3B related to LysE type translocator;Dbxref=Genbank:YP_001534179.1,GeneID:5710696;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534179.1;transl_table=11
NC_009952.1	RefSeq	gene	3003577	3004542	.	+	.	ID=gene2883;Name=Dshi_2846;Dbxref=GeneID:5710697;gbkey=Gene;locus_tag=Dshi_2846
NC_009952.1	RefSeq	CDS	3003577	3004542	.	+	0	ID=cds2837;Name=YP_001534180.1;Parent=gene2883;Note=PFAM: inner-membrane translocator COG1079: Uncharacterized ABC-type transport system%2C permease component;Dbxref=Genbank:YP_001534180.1,GeneID:5710697;gbkey=CDS;product=inner-membrane translocator;protein_id=YP_001534180.1;transl_table=11
NC_009952.1	RefSeq	gene	3004600	3005520	.	+	.	ID=gene2884;Name=Dshi_2847;Dbxref=GeneID:5710698;gbkey=Gene;locus_tag=Dshi_2847
NC_009952.1	RefSeq	CDS	3004600	3005520	.	+	0	ID=cds2838;Name=YP_001534181.1;Parent=gene2884;Note=Swiss-Prot: PFAM: protein of unknown function DUF81 KEGG: sil:SPO0375 membrane protein;Dbxref=Genbank:YP_001534181.1,GeneID:5710698;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534181.1;transl_table=11
NC_009952.1	RefSeq	gene	3005517	3006275	.	+	.	ID=gene2885;Name=Dshi_2848;Dbxref=GeneID:5710699;gbkey=Gene;locus_tag=Dshi_2848
NC_009952.1	RefSeq	CDS	3005517	3006275	.	+	0	ID=cds2839;Name=YP_001534182.1;Parent=gene2885;Note=TIGR02186%23 conserved hypothetical protein;Dbxref=Genbank:YP_001534182.1,GeneID:5710699;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534182.1;transl_table=11
NC_009952.1	RefSeq	gene	3006406	3007137	.	-	.	ID=gene2886;Name=Dshi_2849;Dbxref=GeneID:5710700;gbkey=Gene;locus_tag=Dshi_2849
NC_009952.1	RefSeq	CDS	3006406	3007137	.	-	0	ID=cds2840;Name=YP_001534183.1;Parent=gene2886;Note=Swiss-Prot: Q9KWN1-Serine 3-dehydrogenase PFAM: NAD-dependent epimerase%2Fdehydratase%3B short-chain dehydrogenase%2Freductase SDR COG4221: Short-chain alcohol dehydrogenase of unknown specificity;Dbxref=Genbank:YP_001534183.1,GeneID:5710700;gbkey=CDS;product=short-chain dehydrogenase%2Freductase;protein_id=YP_001534183.1;transl_table=11
NC_009952.1	RefSeq	gene	3007134	3008669	.	-	.	ID=gene2887;Name=Dshi_2850;Dbxref=GeneID:5710701;gbkey=Gene;locus_tag=Dshi_2850
NC_009952.1	RefSeq	CDS	3007134	3008669	.	-	0	ID=cds2841;Name=YP_001534184.1;Parent=gene2887;Note=SMART 00382: AAA - ATPases associated with a variety of cellular activities%3B AAA family;Dbxref=Genbank:YP_001534184.1,GeneID:5710701;gbkey=CDS;product=putative ATPase;protein_id=YP_001534184.1;transl_table=11
NC_009952.1	RefSeq	gene	3008719	3009339	.	-	.	ID=gene2888;Name=Dshi_2851;Dbxref=GeneID:5710702;gbkey=Gene;locus_tag=Dshi_2851
NC_009952.1	RefSeq	CDS	3008719	3009339	.	-	0	ID=cds2842;Name=YP_001534185.1;Parent=gene2888;Note=Swiss-Prot: P33883-Autoinducer synthesis protein lasI PFAM: autoinducer synthesis protein;Dbxref=Genbank:YP_001534185.1,GeneID:5710702;gbkey=CDS;product=autoinducer synthetase;protein_id=YP_001534185.1;transl_table=11
NC_009952.1	RefSeq	gene	3009442	3010152	.	-	.	ID=gene2889;Name=Dshi_2852;Dbxref=GeneID:5710703;gbkey=Gene;locus_tag=Dshi_2852
NC_009952.1	RefSeq	CDS	3009442	3010152	.	-	0	ID=cds2843;Name=YP_001534186.1;Parent=gene2889;Note=ibu%2C PFAM: regulatory protein LuxR%3B Autoinducer-binding domain protein KEGG: sil:SPO0371 autoinducer-binding transcriptional regulator LuxR%2C Autoinducer binding domain pfam03472%2C HTH-LuxR domain pfam00196%3B LuxR family;Dbxref=Genbank:YP_001534186.1,GeneID:5710703;gbkey=CDS;product=transcriptional regulator;protein_id=YP_001534186.1;transl_table=11
NC_009952.1	RefSeq	gene	3010523	3011815	.	-	.	ID=gene2890;Name=Dshi_2853;Dbxref=GeneID:5710704;gbkey=Gene;locus_tag=Dshi_2853
NC_009952.1	RefSeq	CDS	3010523	3011815	.	-	0	ID=cds2844;Name=YP_001534187.1;Parent=gene2890;Note=TIGRFAM: crotonyl-CoA reductase PFAM: Alcohol dehydrogenase zinc-binding domain protein%3B Alcohol dehydrogenase GroES domain protein Swiss-Prot: P42328-Alcohol dehydrogenase;Dbxref=Genbank:YP_001534187.1,GeneID:5710704;gbkey=CDS;product=alcohol dehydrogenase;protein_id=YP_001534187.1;transl_table=11
NC_009952.1	RefSeq	gene	3011938	3013380	.	-	.	ID=gene2891;Name=Dshi_2854;Dbxref=GeneID:5710705;gbkey=Gene;locus_tag=Dshi_2854
NC_009952.1	RefSeq	CDS	3011938	3013380	.	-	0	ID=cds2845;Name=YP_001534188.1;Parent=gene2891;Note=Swiss-Prot: P0A7A7-Glycerol-3-phosphate acyltransferase PFAM: phospholipid%2Fglycerol acyltransferase;Dbxref=Genbank:YP_001534188.1,GeneID:5710705;gbkey=CDS;product=putative glycerol-3-phosphate acyltransferase;protein_id=YP_001534188.1;transl_table=11
NC_009952.1	RefSeq	gene	3013589	3015562	.	+	.	ID=gene2892;Name=mutB;Dbxref=GeneID:5710706;gbkey=Gene;gene=mutB;locus_tag=Dshi_2855
NC_009952.1	RefSeq	CDS	3013589	3015562	.	+	0	ID=cds2846;Name=YP_001534189.1;Parent=gene2892;Note=Swiss-Prot: PFAM: methylmalonyl-CoA mutase%3B cobalamin B12-binding domain protein TIGR00640: methylmalonyl-CoA mutase C-terminal domain TIGR00641: methylmalonyl-CoA mutase N-terminal domain;Dbxref=Genbank:YP_001534189.1,GeneID:5710706;gbkey=CDS;gene=mutB;product=methylmalonyl-CoA mutase;protein_id=YP_001534189.1;transl_table=11
NC_009952.1	RefSeq	gene	3015677	3016192	.	-	.	ID=gene2893;Name=Dshi_2856;Dbxref=GeneID:5710707;gbkey=Gene;locus_tag=Dshi_2856
NC_009952.1	RefSeq	CDS	3015677	3016192	.	-	0	ID=cds2847;Name=YP_001534190.1;Parent=gene2893;Dbxref=Genbank:YP_001534190.1,GeneID:5710707;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534190.1;transl_table=11
NC_009952.1	RefSeq	gene	3016278	3016748	.	+	.	ID=gene2894;Name=Dshi_2857;Dbxref=GeneID:5710708;gbkey=Gene;locus_tag=Dshi_2857
NC_009952.1	RefSeq	CDS	3016278	3016748	.	+	0	ID=cds2848;Name=YP_001534191.1;Parent=gene2894;Dbxref=Genbank:YP_001534191.1,GeneID:5710708;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534191.1;transl_table=11
NC_009952.1	RefSeq	gene	3016895	3017599	.	+	.	ID=gene2895;Name=deoD;Dbxref=GeneID:5710709;gbkey=Gene;gene=deoD;locus_tag=Dshi_2858
NC_009952.1	RefSeq	CDS	3016895	3017599	.	+	0	ID=cds2849;Name=YP_001534192.1;Parent=gene2895;Note=catalyzes the reversible phosphorolysis of ribonucleosides and 2%27- deoxyribonucleosides to the free base and %282%27-deoxy%29ribose-1- phosphate;Dbxref=Genbank:YP_001534192.1,GeneID:5710709;gbkey=CDS;gene=deoD;product=purine nucleoside phosphorylase;protein_id=YP_001534192.1;transl_table=11
NC_009952.1	RefSeq	gene	3017596	3018039	.	+	.	ID=gene2896;Name=deoD;Dbxref=GeneID:5710710;gbkey=Gene;gene=deoD;locus_tag=Dshi_2859
NC_009952.1	RefSeq	CDS	3017596	3018039	.	+	0	ID=cds2850;Name=YP_001534193.1;Parent=gene2896;Dbxref=Genbank:YP_001534193.1,GeneID:5710710;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534193.1;transl_table=11
NC_009952.1	RefSeq	gene	3018036	3018221	.	-	.	ID=gene2897;Name=Dshi_2860;Dbxref=GeneID:5710711;gbkey=Gene;locus_tag=Dshi_2860
NC_009952.1	RefSeq	CDS	3018036	3018221	.	-	0	ID=cds2851;Name=YP_001534194.1;Parent=gene2897;Dbxref=Genbank:YP_001534194.1,GeneID:5710711;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534194.1;transl_table=11
NC_009952.1	RefSeq	gene	3018314	3019093	.	-	.	ID=gene2898;Name=sdhB;Dbxref=GeneID:5710712;gbkey=Gene;gene=sdhB;locus_tag=Dshi_2861
NC_009952.1	RefSeq	CDS	3018314	3019093	.	-	0	ID=cds2852;Name=YP_001534195.1;Parent=gene2898;Note=part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex %28trimer of tetramers%29%3B SdhA%2FB are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC%2FD which are the membrane components and form cytochrome b556%3B SdhC binds ubiquinone%3B oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol%3B the catalytic subunits are similar to fumarate reductase;Dbxref=Genbank:YP_001534195.1,GeneID:5710712;gbkey=CDS;gene=sdhB;product=succinate dehydrogenase iron-sulfur subunit;protein_id=YP_001534195.1;transl_table=11
NC_009952.1	RefSeq	gene	3019123	3019902	.	-	.	ID=gene2899;Name=Dshi_2862;Dbxref=GeneID:5710713;gbkey=Gene;locus_tag=Dshi_2862
NC_009952.1	RefSeq	CDS	3019123	3019902	.	-	0	ID=cds2853;Name=YP_001534196.1;Parent=gene2899;Dbxref=Genbank:YP_001534196.1,GeneID:5710713;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534196.1;transl_table=11
NC_009952.1	RefSeq	gene	3019899	3020720	.	-	.	ID=gene2900;Name=Dshi_2863;Dbxref=GeneID:5710714;gbkey=Gene;locus_tag=Dshi_2863
NC_009952.1	RefSeq	CDS	3019899	3020720	.	-	0	ID=cds2854;Name=YP_001534197.1;Parent=gene2900;Dbxref=Genbank:YP_001534197.1,GeneID:5710714;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534197.1;transl_table=11
NC_009952.1	RefSeq	gene	3020723	3021550	.	-	.	ID=gene2901;Name=Dshi_2864;Dbxref=GeneID:5710715;gbkey=Gene;locus_tag=Dshi_2864
NC_009952.1	RefSeq	CDS	3020723	3021550	.	-	0	ID=cds2855;Name=YP_001534198.1;Parent=gene2901;Dbxref=Genbank:YP_001534198.1,GeneID:5710715;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534198.1;transl_table=11
NC_009952.1	RefSeq	gene	3021696	3023498	.	-	.	ID=gene2902;Name=sdhA;Dbxref=GeneID:5710716;gbkey=Gene;gene=sdhA;locus_tag=Dshi_2865
NC_009952.1	RefSeq	CDS	3021696	3023498	.	-	0	ID=cds2856;Name=YP_001534199.1;Parent=gene2902;Note=part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex %28trimer of tetramers%29%3B SdhA%2FB are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC%2FD which are the membrane components and form cytochrome b556%3B SdhC binds ubiquinone%3B oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol;Dbxref=Genbank:YP_001534199.1,GeneID:5710716;gbkey=CDS;gene=sdhA;product=succinate dehydrogenase flavoprotein subunit;protein_id=YP_001534199.1;transl_table=11
NC_009952.1	RefSeq	gene	3023515	3023886	.	-	.	ID=gene2903;Name=Dshi_2866;Dbxref=GeneID:5710717;gbkey=Gene;locus_tag=Dshi_2866
NC_009952.1	RefSeq	CDS	3023515	3023886	.	-	0	ID=cds2857;Name=YP_001534200.1;Parent=gene2903;Note=TIGRFAM: TIGR02968 succinate dehydrogenase%2C hydrophobic membrane anchor protein%3B COG: COG2142 - Succinate dehydrogenase%2C hydrophobic anchor subunit%3B similar to succinate dehydrogenase;Dbxref=Genbank:YP_001534200.1,GeneID:5710717;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534200.1;transl_table=11
NC_009952.1	RefSeq	gene	3023898	3024281	.	-	.	ID=gene2904;Name=Dshi_2867;Dbxref=GeneID:5710718;gbkey=Gene;locus_tag=Dshi_2867
NC_009952.1	RefSeq	CDS	3023898	3024281	.	-	0	ID=cds2858;Name=YP_001534201.1;Parent=gene2904;Note=SWISSPROT P69054: Succinate dehydrogenase cytochrome b556 subunit sdhC%3B TIGRFAM: TIGR02970 succinate dehydrogenase%2C cytochrome b556 subunit%3B COG: COG2009 - Succinate dehydrogenase%2Ffumarate reductase%2C cytochrome b subunit%3B PFAM: PF01127 - Succinate dehydrogenase cytochrome b subunit%3B PIR: PIRSF000178 - succinate dehydrogenase%2C cytochrome b560 subunit%3B PROSITE: PS01001;Dbxref=Genbank:YP_001534201.1,GeneID:5710718;gbkey=CDS;product=putative succinate dehydrogenase cytochrome subunit B;protein_id=YP_001534201.1;transl_table=11
NC_009952.1	RefSeq	gene	3024581	3025060	.	+	.	ID=gene2905;Name=Dshi_2868;Dbxref=GeneID:5710719;gbkey=Gene;locus_tag=Dshi_2868
NC_009952.1	RefSeq	CDS	3024581	3025060	.	+	0	ID=cds2859;Name=YP_001534202.1;Parent=gene2905;Note=SWISSPROT Q3J2P2: Cytochrome c-554 %5BPrecursor%5D cycF%3B COG: COG3909 - Cytochrome c556%3B PFAM: PF01322%3B PIR: PIRSF000027%3B PRINTS: PR00608%3B PROSITE: PS51009%3B Gene3D: G3DSA:1.20.120.10;Dbxref=Genbank:YP_001534202.1,GeneID:5710719;gbkey=CDS;product=cytochrome c;protein_id=YP_001534202.1;transl_table=11
NC_009952.1	RefSeq	gene	3025070	3025948	.	+	.	ID=gene2906;Name=Dshi_2869;Dbxref=GeneID:5710720;gbkey=Gene;locus_tag=Dshi_2869
NC_009952.1	RefSeq	CDS	3025070	3025948	.	+	0	ID=cds2860;Name=YP_001534203.1;Parent=gene2906;Note=SWISSPROT P0A388: Alcohol dehydrogenase cytochrome c subunit %5BPrecursor%5D adhB%3B COG: COG2010 - Cytochrome c%2C mono- and diheme variants%3B PROSITE: PS51007%3B SUPERFAMILY: SSF46626;Dbxref=Genbank:YP_001534203.1,GeneID:5710720;gbkey=CDS;product=putative alcohol dehydrogenase cytochrome subunit C;protein_id=YP_001534203.1;transl_table=11
NC_009952.1	RefSeq	gene	3026023	3026229	.	+	.	ID=gene2907;Name=Dshi_2870;Dbxref=GeneID:5710721;gbkey=Gene;locus_tag=Dshi_2870
NC_009952.1	RefSeq	CDS	3026023	3026229	.	+	0	ID=cds2861;Name=YP_001534204.1;Parent=gene2907;Dbxref=Genbank:YP_001534204.1,GeneID:5710721;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534204.1;transl_table=11
NC_009952.1	RefSeq	gene	3026266	3027297	.	-	.	ID=gene2908;Name=Dshi_2871;Dbxref=GeneID:5710722;gbkey=Gene;locus_tag=Dshi_2871
NC_009952.1	RefSeq	CDS	3026266	3027297	.	-	0	ID=cds2862;Name=YP_001534205.1;Parent=gene2908;Note=COG: COG2030 - Acyl dehydratase%3B PIR: PIRSF021494%3B SUPERFAMILY: SSF54637;Dbxref=Genbank:YP_001534205.1,GeneID:5710722;gbkey=CDS;product=putative thiol ester dehydrase%2Fisomerase;protein_id=YP_001534205.1;transl_table=11
NC_009952.1	RefSeq	gene	3027297	3027500	.	-	.	ID=gene2909;Name=Dshi_2872;Dbxref=GeneID:5710723;gbkey=Gene;locus_tag=Dshi_2872
NC_009952.1	RefSeq	CDS	3027297	3027500	.	-	0	ID=cds2863;Name=YP_001534206.1;Parent=gene2909;Note=COG: COG5515 - Uncharacterized conserved small protein;Dbxref=Genbank:YP_001534206.1,GeneID:5710723;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534206.1;transl_table=11
NC_009952.1	RefSeq	gene	3027513	3028076	.	-	.	ID=gene2910;Name=Dshi_2873;Dbxref=GeneID:5710724;gbkey=Gene;locus_tag=Dshi_2873
NC_009952.1	RefSeq	CDS	3027513	3028076	.	-	0	ID=cds2864;Name=YP_001534207.1;Parent=gene2910;Note=COG: COG4094 - Predicted membrane protein%3B PFAM: PF07298 - NnrU protein;Dbxref=Genbank:YP_001534207.1,GeneID:5710724;gbkey=CDS;product=putative NnrU protein;protein_id=YP_001534207.1;transl_table=11
NC_009952.1	RefSeq	gene	3028080	3028967	.	-	.	ID=gene2911;Name=Dshi_2874;Dbxref=GeneID:5710725;gbkey=Gene;locus_tag=Dshi_2874
NC_009952.1	RefSeq	CDS	3028080	3028967	.	-	0	ID=cds2865;Name=YP_001534208.1;Parent=gene2911;Note=PIR: PIRSF015582 - citrate lyase%2C beta subunit%3B PFAM: PF03328%3B COG: COG2301 - Citrate lyase beta subunit%3B Gene3D: G3DSA:3.20.20.60;Dbxref=Genbank:YP_001534208.1,GeneID:5710725;gbkey=CDS;product=putative citrate lyase subunit beta;protein_id=YP_001534208.1;transl_table=11
NC_009952.1	RefSeq	gene	3029274	3029597	.	+	.	ID=gene2912;Name=Dshi_2875;Dbxref=GeneID:5710726;gbkey=Gene;locus_tag=Dshi_2875
NC_009952.1	RefSeq	CDS	3029274	3029597	.	+	0	ID=cds2866;Name=YP_001534209.1;Parent=gene2912;Dbxref=Genbank:YP_001534209.1,GeneID:5710726;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534209.1;transl_table=11
NC_009952.1	RefSeq	gene	3029964	3030926	.	+	.	ID=gene2913;Name=mdh;Dbxref=GeneID:5710727;gbkey=Gene;gene=mdh;locus_tag=Dshi_2876
NC_009952.1	RefSeq	CDS	3029964	3030926	.	+	0	ID=cds2867;Name=YP_001534210.1;Parent=gene2913;Note=Catalyzes the reversible oxidation of malate to oxaloacetate;Dbxref=Genbank:YP_001534210.1,GeneID:5710727;gbkey=CDS;gene=mdh;product=malate dehydrogenase;protein_id=YP_001534210.1;transl_table=11
NC_009952.1	RefSeq	gene	3031039	3032007	.	+	.	ID=gene2914;Name=Dshi_2877;Dbxref=GeneID:5710728;gbkey=Gene;locus_tag=Dshi_2877
NC_009952.1	RefSeq	CDS	3031039	3032007	.	+	0	ID=cds2868;Name=YP_001534211.1;Parent=gene2914;Dbxref=Genbank:YP_001534211.1,GeneID:5710728;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534211.1;transl_table=11
NC_009952.1	RefSeq	gene	3032211	3033404	.	+	.	ID=gene2915;Name=sucC;Dbxref=GeneID:5710729;gbkey=Gene;gene=sucC;locus_tag=Dshi_2878
NC_009952.1	RefSeq	CDS	3032211	3033404	.	+	0	ID=cds2869;Name=YP_001534212.1;Parent=gene2915;Note=catalyzes the interconversion of succinyl-CoA and succinate;Dbxref=Genbank:YP_001534212.1,GeneID:5710729;gbkey=CDS;gene=sucC;product=succinyl-CoA synthetase subunit beta;protein_id=YP_001534212.1;transl_table=11
NC_009952.1	RefSeq	gene	3033534	3034235	.	+	.	ID=gene2916;Name=Dshi_2879;Dbxref=GeneID:5710730;gbkey=Gene;locus_tag=Dshi_2879
NC_009952.1	RefSeq	CDS	3033534	3034235	.	+	0	ID=cds2870;Name=YP_001534213.1;Parent=gene2916;Dbxref=Genbank:YP_001534213.1,GeneID:5710730;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534213.1;transl_table=11
NC_009952.1	RefSeq	gene	3034232	3034780	.	+	.	ID=gene2917;Name=Dshi_2880;Dbxref=GeneID:5710731;gbkey=Gene;locus_tag=Dshi_2880
NC_009952.1	RefSeq	CDS	3034232	3034780	.	+	0	ID=cds2871;Name=YP_001534214.1;Parent=gene2917;Dbxref=Genbank:YP_001534214.1,GeneID:5710731;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534214.1;transl_table=11
NC_009952.1	RefSeq	gene	3034840	3035316	.	+	.	ID=gene2918;Name=Dshi_2881;Dbxref=GeneID:5710732;gbkey=Gene;locus_tag=Dshi_2881
NC_009952.1	RefSeq	CDS	3034840	3035316	.	+	0	ID=cds2872;Name=YP_001534215.1;Parent=gene2918;Dbxref=Genbank:YP_001534215.1,GeneID:5710732;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534215.1;transl_table=11
NC_009952.1	RefSeq	gene	3035436	3036317	.	+	.	ID=gene2919;Name=sucD1;Dbxref=GeneID:5710733;gbkey=Gene;gene=sucD1;locus_tag=Dshi_2882
NC_009952.1	RefSeq	CDS	3035436	3036317	.	+	0	ID=cds2873;Name=YP_001534216.1;Parent=gene2919;Note=SWISSPROT P0AGE9: Succinyl-CoA ligase %5BADP-forming%5D subunit alpha%3B PIR: PIRSF001553 - succinyl-CoA synthetase%2C alpha subunit%3B TIGRFAM: TIGR01019 succinyl-CoA synthetase%2C alpha subunit%3B COG: COG0074%3B PFAM: PF02629%2C PF00549%3B PROSITE: PS00399%2C PS01216%3B PRINTS: PR01798;Dbxref=Genbank:YP_001534216.1,GeneID:5710733;gbkey=CDS;gene=sucD1;product=succinyl-CoA ligase %5BADP-forming%5D subunit alpha;protein_id=YP_001534216.1;transl_table=11
NC_009952.1	RefSeq	gene	3036507	3039470	.	+	.	ID=gene2920;Name=sucA;Dbxref=GeneID:5710734;gbkey=Gene;gene=sucA;locus_tag=Dshi_2883
NC_009952.1	RefSeq	CDS	3036507	3039470	.	+	0	ID=cds2874;Name=YP_001534217.1;Parent=gene2920;Note=SucA%3B E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate%3B SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide;Dbxref=Genbank:YP_001534217.1,GeneID:5710734;gbkey=CDS;gene=sucA;product=2-oxoglutarate dehydrogenase E1 component;protein_id=YP_001534217.1;transl_table=11
NC_009952.1	RefSeq	gene	3039475	3040965	.	+	.	ID=gene2921;Name=sucB;Dbxref=GeneID:5710735;gbkey=Gene;gene=sucB;locus_tag=Dshi_2884
NC_009952.1	RefSeq	CDS	3039475	3040965	.	+	0	ID=cds2875;Name=YP_001534218.1;Parent=gene2921;Note=component of 2-oxoglutarate dehydrogenase complex%3B catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA;Dbxref=Genbank:YP_001534218.1,GeneID:5710735;gbkey=CDS;gene=sucB;product=dihydrolipoamide succinyltransferase;protein_id=YP_001534218.1;transl_table=11
NC_009952.1	RefSeq	gene	3041239	3041628	.	+	.	ID=gene2922;Name=Dshi_2885;Dbxref=GeneID:5710736;gbkey=Gene;locus_tag=Dshi_2885
NC_009952.1	RefSeq	CDS	3041239	3041628	.	+	0	ID=cds2876;Name=YP_001534219.1;Parent=gene2922;Note=COG: COG3686 - Predicted membrane protein;Dbxref=Genbank:YP_001534219.1,GeneID:5710736;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534219.1;transl_table=11
NC_009952.1	RefSeq	gene	3041719	3043113	.	+	.	ID=gene2923;Name=lpd;Dbxref=GeneID:5710737;gbkey=Gene;gene=lpd;locus_tag=Dshi_2886
NC_009952.1	RefSeq	CDS	3041719	3043113	.	+	0	ID=cds2877;Name=YP_001534220.1;Parent=gene2923;Note=SWISSPROT P14218: Dihydrolipoyl dehydrogenase%3B TIGRFAM: TIGR01350 dihydrolipoamide dehydrogenase%3B COG: COG1249 - Pyruvate%2F2-oxoglutarate dehydrogenase complex%2C dihydrolipoamide dehydrogenase %28E3%29 component%2C and related enzymes%3B PFAM: PF00070%2C PF02852%2C PF07992%3B PRINTS: PR00945%2C PR00411%2C PR00368;Dbxref=Genbank:YP_001534220.1,GeneID:5710737;gbkey=CDS;gene=lpd;product=dihydrolipoyl dehydrogenase;protein_id=YP_001534220.1;transl_table=11
NC_009952.1	RefSeq	gene	3043208	3044686	.	-	.	ID=gene2924;Name=gabD;Dbxref=GeneID:5710738;gbkey=Gene;gene=gabD;locus_tag=Dshi_2887
NC_009952.1	RefSeq	CDS	3043208	3044686	.	-	0	ID=cds2878;Name=YP_001534221.1;Parent=gene2924;Note=TIGRFAM: TIGR01780 succinic semialdehyde dehydrogenase%3B COG: COG1012 - NAD-dependent aldehyde dehydrogenases%3B PFAM: PF00171%3B PROSITE: PS00070%2C PS00687;Dbxref=Genbank:YP_001534221.1,GeneID:5710738;gbkey=CDS;gene=gabD;product=NADP%28%2B%29 dependentsuccinate-semialdehyde dehydrogenase;protein_id=YP_001534221.1;transl_table=11
NC_009952.1	RefSeq	gene	3044761	3045534	.	+	.	ID=gene2925;Name=Dshi_2888;Dbxref=GeneID:5710739;gbkey=Gene;locus_tag=Dshi_2888
NC_009952.1	RefSeq	CDS	3044761	3045534	.	+	0	ID=cds2879;Name=YP_001534222.1;Parent=gene2925;Note=SUPERFAMILY: SSF53474%3B Gene3D: G3DSA:3.40.50.1820%3B COG: COG0657 - Esterase%2Flipase;Dbxref=Genbank:YP_001534222.1,GeneID:5710739;gbkey=CDS;product=putative alpha%2Fbeta hydrolase;protein_id=YP_001534222.1;transl_table=11
NC_009952.1	RefSeq	gene	3045531	3046514	.	-	.	ID=gene2926;Name=Dshi_2889;Dbxref=GeneID:5710740;gbkey=Gene;locus_tag=Dshi_2889
NC_009952.1	RefSeq	CDS	3045531	3046514	.	-	0	ID=cds2880;Name=YP_001534223.1;Parent=gene2926;Note=COG: COG3191 - L-aminopeptidase%2FD-esterase;Dbxref=Genbank:YP_001534223.1,GeneID:5710740;gbkey=CDS;product=putative peptidase;protein_id=YP_001534223.1;transl_table=11
NC_009952.1	RefSeq	gene	3046511	3046822	.	-	.	ID=gene2927;Name=Dshi_2890;Dbxref=GeneID:5710741;gbkey=Gene;locus_tag=Dshi_2890
NC_009952.1	RefSeq	CDS	3046511	3046822	.	-	0	ID=cds2881;Name=YP_001534224.1;Parent=gene2927;Dbxref=Genbank:YP_001534224.1,GeneID:5710741;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534224.1;transl_table=11
NC_009952.1	RefSeq	gene	3046819	3047547	.	-	.	ID=gene2928;Name=fabG;Dbxref=GeneID:5710742;gbkey=Gene;gene=fabG;locus_tag=Dshi_2891
NC_009952.1	RefSeq	CDS	3046819	3047547	.	-	0	ID=cds2882;Name=YP_001534225.1;Parent=gene2928;Note=Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis;Dbxref=Genbank:YP_001534225.1,GeneID:5710742;gbkey=CDS;gene=fabG;product=3-ketoacyl-ACP reductase;protein_id=YP_001534225.1;transl_table=11
NC_009952.1	RefSeq	gene	3047660	3048118	.	-	.	ID=gene2929;Name=Dshi_2892;Dbxref=GeneID:5710743;gbkey=Gene;locus_tag=Dshi_2892
NC_009952.1	RefSeq	CDS	3047660	3048118	.	-	0	ID=cds2883;Name=YP_001534226.1;Parent=gene2929;Note=SWISSPROT P0C054: Small heat shock protein ibpA%3B PFAM: PF00011%3B PROSITE: PS01031%3B SUPERFAMILY: SSF49764%3B COG: COG0071 - Molecular chaperone %28small heat shock protein%29;Dbxref=Genbank:YP_001534226.1,GeneID:5710743;gbkey=CDS;product=putative small heat shock %28HSP20%29 protein;protein_id=YP_001534226.1;transl_table=11
NC_009952.1	RefSeq	gene	3048258	3049076	.	-	.	ID=gene2930;Name=Dshi_2893;Dbxref=GeneID:5710744;gbkey=Gene;locus_tag=Dshi_2893
NC_009952.1	RefSeq	CDS	3048258	3049076	.	-	0	ID=cds2884;Name=YP_001534227.1;Parent=gene2930;Note=COG: COG3591 - V8-like Glu-specific endopeptidase%3B PFAM: PF00089%3B SMART: SM00020%3B PROSITE: PS00134%2C PS50240%3B PRINTS: PR00722%3B similar to serine protease;Dbxref=Genbank:YP_001534227.1,GeneID:5710744;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534227.1;transl_table=11
NC_009952.1	RefSeq	gene	3049140	3050444	.	-	.	ID=gene2931;Name=Dshi_2894;Dbxref=GeneID:5710745;gbkey=Gene;locus_tag=Dshi_2894
NC_009952.1	RefSeq	CDS	3049140	3050444	.	-	0	ID=cds2885;Name=YP_001534228.1;Parent=gene2931;Note=COG: COG0247 - Fe-S oxidoreductase%3B PFAM: PF00037%2C PF02754%3B PROSITE: PS00198%3B SWISSPROT P52074: Glycolate oxidase iron-sulfur subunit%3B similar to glycolate oxidase iron-sulfur subunit;Dbxref=Genbank:YP_001534228.1,GeneID:5710745;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534228.1;transl_table=11
NC_009952.1	RefSeq	gene	3050467	3051603	.	-	.	ID=gene2932;Name=Dshi_2895;Dbxref=GeneID:5710746;gbkey=Gene;locus_tag=Dshi_2895
NC_009952.1	RefSeq	CDS	3050467	3051603	.	-	0	ID=cds2886;Name=YP_001534229.1;Parent=gene2932;Note=COG: COG0277 - FAD%2FFMN-containing dehydrogenases%3B PFAM: PF01565%3B similar to glycolate oxidase subunit glcE;Dbxref=Genbank:YP_001534229.1,GeneID:5710746;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534229.1;transl_table=11
NC_009952.1	RefSeq	gene	3051689	3053131	.	-	.	ID=gene2933;Name=Dshi_2896;Dbxref=GeneID:5710747;gbkey=Gene;locus_tag=Dshi_2896
NC_009952.1	RefSeq	CDS	3051689	3053131	.	-	0	ID=cds2887;Name=YP_001534230.1;Parent=gene2933;Note=TIGRFAM: TIGR00387 glycolate oxidase%2C subunit GlcD%3B COG: COG0277 - FAD%2FFMN-containing dehydrogenases%3B PFAM: PF01565%2C PF02913%3B SWISSPROT P0AEP9: Glycolate oxidase subunit glcD%3B similar to glycolate oxidase subunit glcD;Dbxref=Genbank:YP_001534230.1,GeneID:5710747;gbkey=CDS;product=FAD-binding oxidoreductase%2Ftransferase;protein_id=YP_001534230.1;transl_table=11
NC_009952.1	RefSeq	gene	3053287	3053973	.	-	.	ID=gene2934;Name=Dshi_2897;Dbxref=GeneID:5710748;gbkey=Gene;locus_tag=Dshi_2897
NC_009952.1	RefSeq	CDS	3053287	3053973	.	-	0	ID=cds2888;Name=YP_001534231.1;Parent=gene2934;Note=SWISSPROT P23461: Protein pucD%3B associated with puc operon%2C related to protein pucD;Dbxref=Genbank:YP_001534231.1,GeneID:5710748;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534231.1;transl_table=11
NC_009952.1	RefSeq	gene	3054022	3055425	.	-	.	ID=gene2935;Name=pucC1;Dbxref=GeneID:5710749;gbkey=Gene;gene=pucC1;locus_tag=Dshi_2898
NC_009952.1	RefSeq	CDS	3054022	3055425	.	-	0	ID=cds2889;Name=YP_001534232.1;Parent=gene2935;Note=SWISSPROT P23462: Protein pucC%3B PFAM: PF03209;Dbxref=Genbank:YP_001534232.1,GeneID:5710749;gbkey=CDS;gene=pucC1;product=PucC protein;protein_id=YP_001534232.1;transl_table=11
NC_009952.1	RefSeq	gene	3055496	3055837	.	-	.	ID=gene2936;Name=Dshi_2899;Dbxref=GeneID:5710750;gbkey=Gene;locus_tag=Dshi_2899
NC_009952.1	RefSeq	CDS	3055496	3055837	.	-	0	ID=cds2890;Name=YP_001534233.1;Parent=gene2936;Note=SWISSPROT P95655: Light-harvesting protein B-800%2F850 alpha chain%3B PFAM: PF00556%3B PRINTS: PR00673%3B PROSITE: PS00968%3B pucA;Dbxref=Genbank:YP_001534233.1,GeneID:5710750;gbkey=CDS;product=putative light-harvesting protein B-800%2F850 subunit alpha;protein_id=YP_001534233.1;transl_table=11
NC_009952.1	RefSeq	gene	3055850	3056005	.	-	.	ID=gene2937;Name=pucB;Dbxref=GeneID:5710751;gbkey=Gene;gene=pucB;locus_tag=Dshi_2900
NC_009952.1	RefSeq	CDS	3055850	3056005	.	-	0	ID=cds2891;Name=YP_001534234.1;Parent=gene2937;Note=SWISSPROT P07368: Light-harvesting protein B-800%2F850 beta chain%3B PFAM: PF00556%3B PRINTS: PR00674%3B PROSITE: PS00969;Dbxref=Genbank:YP_001534234.1,GeneID:5710751;gbkey=CDS;gene=pucB;product=light-harvesting protein B-800%2F850 subunit beta;protein_id=YP_001534234.1;transl_table=11
NC_009952.1	RefSeq	gene	3056406	3058565	.	-	.	ID=gene2938;Name=Dshi_2901;Dbxref=GeneID:5710752;gbkey=Gene;locus_tag=Dshi_2901
NC_009952.1	RefSeq	CDS	3056406	3058565	.	-	0	ID=cds2892;Name=YP_001534235.1;Parent=gene2938;Dbxref=Genbank:YP_001534235.1,GeneID:5710752;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534235.1;transl_table=11
NC_009952.1	RefSeq	gene	3058709	3059089	.	+	.	ID=gene2939;Name=Dshi_2902;Dbxref=GeneID:5710753;gbkey=Gene;locus_tag=Dshi_2902
NC_009952.1	RefSeq	CDS	3058709	3059089	.	+	0	ID=cds2893;Name=YP_001534236.1;Parent=gene2939;Dbxref=Genbank:YP_001534236.1,GeneID:5710753;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534236.1;transl_table=11
NC_009952.1	RefSeq	gene	3059093	3061177	.	-	.	ID=gene2940;Name=Dshi_2903;Dbxref=GeneID:5710754;gbkey=Gene;locus_tag=Dshi_2903
NC_009952.1	RefSeq	CDS	3059093	3061177	.	-	0	ID=cds2894;Name=YP_001534237.1;Parent=gene2940;Dbxref=Genbank:YP_001534237.1,GeneID:5710754;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534237.1;transl_table=11
NC_009952.1	RefSeq	gene	3061174	3063948	.	-	.	ID=gene2941;Name=Dshi_2904;Dbxref=GeneID:5710755;gbkey=Gene;locus_tag=Dshi_2904
NC_009952.1	RefSeq	CDS	3061174	3063948	.	-	0	ID=cds2895;Name=YP_001534238.1;Parent=gene2941;Note=TIGRFAM: TIGR02226;Dbxref=Genbank:YP_001534238.1,GeneID:5710755;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534238.1;transl_table=11
NC_009952.1	RefSeq	gene	3063948	3064850	.	-	.	ID=gene2942;Name=Dshi_2905;Dbxref=GeneID:5710756;gbkey=Gene;locus_tag=Dshi_2905
NC_009952.1	RefSeq	CDS	3063948	3064850	.	-	0	ID=cds2896;Name=YP_001534239.1;Parent=gene2942;Note=PFAM: PF01882%3B COG: COG1721 - Uncharacterized conserved protein %28some members contain a von Willebrand factor type A %28vWA%29 domain%29%3B related to DUF58;Dbxref=Genbank:YP_001534239.1,GeneID:5710756;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534239.1;transl_table=11
NC_009952.1	RefSeq	gene	3064847	3065854	.	-	.	ID=gene2943;Name=Dshi_2906;Dbxref=GeneID:5710757;gbkey=Gene;locus_tag=Dshi_2906
NC_009952.1	RefSeq	CDS	3064847	3065854	.	-	0	ID=cds2897;Name=YP_001534240.1;Parent=gene2943;Note=COG: COG0714 - MoxR-like ATPases%3B PFAM: PF07726%3B SMART: SM00382%3B related to AAA ATPase;Dbxref=Genbank:YP_001534240.1,GeneID:5710757;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534240.1;transl_table=11
NC_009952.1	RefSeq	gene	3065916	3066521	.	+	.	ID=gene2944;Name=Dshi_2907;Dbxref=GeneID:5710758;gbkey=Gene;locus_tag=Dshi_2907
NC_009952.1	RefSeq	CDS	3065916	3066521	.	+	0	ID=cds2898;Name=YP_001534241.1;Parent=gene2944;Note=COG: COG3816 - Uncharacterized protein conserved in bacteria%3B PFAM: PF06938 - Protein of unknown function %28DUF1285%29;Dbxref=Genbank:YP_001534241.1,GeneID:5710758;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534241.1;transl_table=11
NC_009952.1	RefSeq	gene	3066582	3067118	.	-	.	ID=gene2945;Name=rluE;Dbxref=GeneID:5710759;gbkey=Gene;gene=rluE;locus_tag=Dshi_2908
NC_009952.1	RefSeq	CDS	3066582	3067118	.	-	0	ID=cds2899;Name=YP_001534242.1;Parent=gene2945;Note=SWISSPROT P75966: Ribosomal large subunit pseudouridine synthase E%3B TIGRFAM: TIGR00093 pseudouridine synthase family%3B COG: COG1187 - 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases%3B PFAM: PF00849 - RNA pseudouridylate synthase%3B PROSITE: PS01149;Dbxref=Genbank:YP_001534242.1,GeneID:5710759;gbkey=CDS;gene=rluE;product=ribosomal large subunit pseudouridine synthase E;protein_id=YP_001534242.1;transl_table=11
NC_009952.1	RefSeq	gene	3067301	3070099	.	-	.	ID=gene2946;Name=polA;Dbxref=GeneID:5710760;gbkey=Gene;gene=polA;locus_tag=Dshi_2909
NC_009952.1	RefSeq	CDS	3067301	3070099	.	-	0	ID=cds2900;Name=YP_001534243.1;Parent=gene2946;Note=has 3%27-5%27 exonuclease%2C 5%27-3%27 exonuclease and 5%27-3%27polymerase activities%2C primarily functions to fill gaps during DNA replication and repair;Dbxref=Genbank:YP_001534243.1,GeneID:5710760;gbkey=CDS;gene=polA;product=DNA polymerase I;protein_id=YP_001534243.1;transl_table=11
NC_009952.1	RefSeq	gene	3070163	3070828	.	-	.	ID=gene2947;Name=Dshi_2910;Dbxref=GeneID:5710761;gbkey=Gene;locus_tag=Dshi_2910
NC_009952.1	RefSeq	CDS	3070163	3070828	.	-	0	ID=cds2901;Name=YP_001534244.1;Parent=gene2947;Note=TIGRFAM: TIGR01065 channel protein%2C hemolysin III family%3B COG: COG1272 - Predicted membrane protein%2C hemolysin III homolog%3B PFAM: PF03006%3B related to haemolysin-III family protein;Dbxref=Genbank:YP_001534244.1,GeneID:5710761;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534244.1;transl_table=11
NC_009952.1	RefSeq	gene	3070889	3071575	.	-	.	ID=gene2948;Name=Dshi_2911;Dbxref=GeneID:5710762;gbkey=Gene;locus_tag=Dshi_2911
NC_009952.1	RefSeq	CDS	3070889	3071575	.	-	0	ID=cds2902;Name=YP_001534245.1;Parent=gene2948;Note=TIGRFAM: TIGR02117 conserved hypothetical protein;Dbxref=Genbank:YP_001534245.1,GeneID:5710762;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534245.1;transl_table=11
NC_009952.1	RefSeq	gene	3071600	3071788	.	-	.	ID=gene2949;Name=Dshi_2912;Dbxref=GeneID:5710763;gbkey=Gene;locus_tag=Dshi_2912
NC_009952.1	RefSeq	CDS	3071600	3071788	.	-	0	ID=cds2903;Name=YP_001534246.1;Parent=gene2949;Note=COG: COG4391 - Uncharacterized protein conserved in bacteria;Dbxref=Genbank:YP_001534246.1,GeneID:5710763;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534246.1;transl_table=11
NC_009952.1	RefSeq	gene	3071922	3072887	.	+	.	ID=gene2950;Name=Dshi_2913;Dbxref=GeneID:5710764;gbkey=Gene;locus_tag=Dshi_2913
NC_009952.1	RefSeq	CDS	3071922	3072887	.	+	0	ID=cds2904;Name=YP_001534247.1;Parent=gene2950;Note=SWISSPROT P36879: Uncharacterized ABC transporter ATP-binding protein yadG%3B PFAM: PF00005%3B PROSITE: PS00211%2C PS50893;Dbxref=Genbank:YP_001534247.1,GeneID:5710764;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=YP_001534247.1;transl_table=11
NC_009952.1	RefSeq	gene	3072942	3073709	.	-	.	ID=gene2951;Name=Dshi_2914;Dbxref=GeneID:5710765;gbkey=Gene;locus_tag=Dshi_2914
NC_009952.1	RefSeq	CDS	3072942	3073709	.	-	0	ID=cds2905;Name=YP_001534248.1;Parent=gene2951;Note=COG: COG1075 - Predicted acetyltransferases and hydrolases with the alpha%2Fbeta hydrolase fold%3B PROSITE: PS51257%3B SUPERFAMILY: SSF53474;Dbxref=Genbank:YP_001534248.1,GeneID:5710765;gbkey=CDS;product=putative alpha%2Fbeta hydrolase;protein_id=YP_001534248.1;transl_table=11
NC_009952.1	RefSeq	gene	3073785	3074231	.	+	.	ID=gene2952;Name=Dshi_2915;Dbxref=GeneID:5710766;gbkey=Gene;locus_tag=Dshi_2915
NC_009952.1	RefSeq	CDS	3073785	3074231	.	+	0	ID=cds2906;Name=YP_001534249.1;Parent=gene2952;Note=SWISSPROT Q58549: ADP-ribose pyrophosphatase%3B COG: COG1051 - ADP-ribose pyrophosphatase PFAM: PF00293%3B PRINTS: PR00502%3B Gene3D: G3DSA:3.90.79.10%3B related to ADP-ribose pyrophosphatase;Dbxref=Genbank:YP_001534249.1,GeneID:5710766;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534249.1;transl_table=11
NC_009952.1	RefSeq	gene	3074228	3075076	.	-	.	ID=gene2953;Name=Dshi_2916;Dbxref=GeneID:5710767;gbkey=Gene;locus_tag=Dshi_2916
NC_009952.1	RefSeq	CDS	3074228	3075076	.	-	0	ID=cds2907;Name=YP_001534250.1;Parent=gene2953;Note=PFAM: PF00892 - integral membrane protein DUF6%3B COG: COG5006 - Predicted permease%2C DMT superfamily%3B similar to integral membrane protein DUF6;Dbxref=Genbank:YP_001534250.1,GeneID:5710767;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534250.1;transl_table=11
NC_009952.1	RefSeq	gene	3075327	3076484	.	-	.	ID=gene2954;Name=Dshi_2917;Dbxref=GeneID:5710768;gbkey=Gene;locus_tag=Dshi_2917
NC_009952.1	RefSeq	CDS	3075327	3076484	.	-	0	ID=cds2908;Name=YP_001534251.1;Parent=gene2954;Note=TIGRFAM: TIGR02318 phosphonate metabolism protein PhnM%3B COG: COG3454 - Metal-dependent hydrolase involved in phosphonate metabolism%3B PFAM: PF01979 - Amidohydrolase family%3B similar to amidohydrolase;Dbxref=Genbank:YP_001534251.1,GeneID:5710768;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534251.1;transl_table=11
NC_009952.1	RefSeq	gene	3076513	3077004	.	-	.	ID=gene2955;Name=Dshi_2918;Dbxref=GeneID:5710769;gbkey=Gene;locus_tag=Dshi_2918
NC_009952.1	RefSeq	CDS	3076513	3077004	.	-	0	ID=cds2909;Name=YP_001534252.1;Parent=gene2955;Note=PFAM: Acetyltransferase %28GNAT%29 family%3B PROSITE: PS51186%3B COG: COG3153 - Predicted acetyltransferase%3B similar to acetyltransferase %28GNAT%29;Dbxref=Genbank:YP_001534252.1,GeneID:5710769;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534252.1;transl_table=11
NC_009952.1	RefSeq	gene	3077174	3078817	.	-	.	ID=gene2956;Name=groEL;Dbxref=GeneID:5710770;gbkey=Gene;gene=groEL;locus_tag=Dshi_2919
NC_009952.1	RefSeq	CDS	3077174	3078817	.	-	0	ID=cds2910;Name=YP_001534253.1;Parent=gene2956;Note=60 kDa chaperone family%3B promotes refolding of misfolded polypeptides especially under stressful conditions%3B forms two stacked rings of heptamers to form a barrel-shaped 14mer%3B ends can be capped by GroES%3B misfolded proteins enter the barrel where they are refolded when GroES binds%3B many bacteria have multiple copies of the groEL gene which are active under different environmental conditions%3B the B.japonicum protein in this cluster is expressed constitutively%3B in Rhodobacter%2C Corynebacterium and Rhizobium this protein is not essential for growth;Dbxref=Genbank:YP_001534253.1,GeneID:5710770;gbkey=CDS;gene=groEL;product=chaperonin GroEL;protein_id=YP_001534253.1;transl_table=11
NC_009952.1	RefSeq	gene	3078861	3079172	.	-	.	ID=gene2957;Name=Dshi_2920;Dbxref=GeneID:5710771;gbkey=Gene;locus_tag=Dshi_2920
NC_009952.1	RefSeq	CDS	3078861	3079172	.	-	0	ID=cds2911;Name=YP_001534254.1;Parent=gene2957;Note=COG: COG0234 - Co-chaperonin GroES %28HSP10%29%3B PFAM: PF00166%3B PROSITE: PS00681%3B PRINTS: PR00297;Dbxref=Genbank:YP_001534254.1,GeneID:5710771;gbkey=CDS;product=chaperonin 10 Kd subunit;protein_id=YP_001534254.1;transl_table=11
NC_009952.1	RefSeq	gene	3079549	3080532	.	+	.	ID=gene2958;Name=Dshi_2921;Dbxref=GeneID:5710772;gbkey=Gene;locus_tag=Dshi_2921
NC_009952.1	RefSeq	CDS	3079549	3080532	.	+	0	ID=cds2912;Name=YP_001534255.1;Parent=gene2958;Dbxref=Genbank:YP_001534255.1,GeneID:5710772;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534255.1;transl_table=11
NC_009952.1	RefSeq	gene	3080559	3081224	.	-	.	ID=gene2959;Name=Dshi_2922;Dbxref=GeneID:5710773;gbkey=Gene;locus_tag=Dshi_2922
NC_009952.1	RefSeq	CDS	3080559	3081224	.	-	0	ID=cds2913;Name=YP_001534256.1;Parent=gene2959;Note=COG: COG5482 - Uncharacterized conserved protein;Dbxref=Genbank:YP_001534256.1,GeneID:5710773;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534256.1;transl_table=11
NC_009952.1	RefSeq	gene	3081428	3082663	.	+	.	ID=gene2960;Name=Dshi_2923;Dbxref=GeneID:5710774;gbkey=Gene;locus_tag=Dshi_2923
NC_009952.1	RefSeq	CDS	3081428	3082663	.	+	0	ID=cds2914;Name=YP_001534257.1;Parent=gene2960;Note=PFAM: PF07694%3B related to 5TMR of 5TMR-LYT;Dbxref=Genbank:YP_001534257.1,GeneID:5710774;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534257.1;transl_table=11
NC_009952.1	RefSeq	gene	3082742	3083743	.	+	.	ID=gene2961;Name=ppaC;Dbxref=GeneID:5710775;gbkey=Gene;gene=ppaC;locus_tag=Dshi_2924
NC_009952.1	RefSeq	CDS	3082742	3083743	.	+	0	ID=cds2915;Name=YP_001534258.1;Parent=gene2961;Note=catalyzes the hydrolysis of pyrophosphate to phosphate;Dbxref=Genbank:YP_001534258.1,GeneID:5710775;gbkey=CDS;gene=ppaC;product=putative manganese-dependent inorganic pyrophosphatase;protein_id=YP_001534258.1;transl_table=11
NC_009952.1	RefSeq	gene	3084036	3084908	.	+	.	ID=gene2962;Name=Dshi_2925;Dbxref=GeneID:5710776;gbkey=Gene;locus_tag=Dshi_2925
NC_009952.1	RefSeq	CDS	3084036	3084908	.	+	0	ID=cds2916;Name=YP_001534259.1;Parent=gene2962;Note=TIGRFAM: TIGR01459 HAD-superfamily class IIA hydrolase%2C TIGR01459 TIGR01460 Haloacid Dehalogenase Superfamily Class %28subfamily%29 IIA%3B COG: COG0647 - Predicted sugar phosphatases of the HAD superfamily%3B PFAM: PF00702;Dbxref=Genbank:YP_001534259.1,GeneID:5710776;gbkey=CDS;product=putative Haloacid dehalogenase-like hydrolase;protein_id=YP_001534259.1;transl_table=11
NC_009952.1	RefSeq	gene	3085029	3085472	.	+	.	ID=gene2963;Name=Dshi_2926;Dbxref=GeneID:5710777;gbkey=Gene;locus_tag=Dshi_2926
NC_009952.1	RefSeq	CDS	3085029	3085472	.	+	0	ID=cds2917;Name=YP_001534260.1;Parent=gene2963;Note=SWISSPROT P77455: Protein maoC%3B PFAM: PF01575%3B COG: COG2030 - Acyl dehydratase;Dbxref=Genbank:YP_001534260.1,GeneID:5710777;gbkey=CDS;product=putative MaoC-like dehydratase;protein_id=YP_001534260.1;transl_table=11
NC_009952.1	RefSeq	gene	3085522	3086475	.	+	.	ID=gene2964;Name=ribF;Dbxref=GeneID:5710778;gbkey=Gene;gene=ribF;locus_tag=Dshi_2927
NC_009952.1	RefSeq	CDS	3085522	3086475	.	+	0	ID=cds2918;Name=YP_001534261.1;Parent=gene2964;Note=SWISSPROT P0AG40: Riboflavin biosynthesis protein%3B TIGRFAM: TIGR00083 riboflavin kinase%2FFMN adenylyltransferase%3B COG: COG0196 - FAD synthase%3B PFAM: PF06574%3B Gene3D: G3DSA:3.40.50.620;Dbxref=Genbank:YP_001534261.1,GeneID:5710778;gbkey=CDS;gene=ribF;product=riboflavin biosynthesis protein;protein_id=YP_001534261.1;transl_table=11
NC_009952.1	RefSeq	gene	3086472	3086963	.	+	.	ID=gene2965;Name=ribF;Dbxref=GeneID:5710779;gbkey=Gene;gene=ribF;locus_tag=Dshi_2928
NC_009952.1	RefSeq	CDS	3086472	3086963	.	+	0	ID=cds2919;Name=YP_001534262.1;Parent=gene2965;Note=COG: COG2983 - Uncharacterized conserved protein%3B PFAM: PF03692 - Uncharacterized protein family %28UPF0153%29;Dbxref=Genbank:YP_001534262.1,GeneID:5710779;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534262.1;transl_table=11
NC_009952.1	RefSeq	gene	3086930	3087763	.	-	.	ID=gene2966;Name=Dshi_2929;Dbxref=GeneID:5710780;gbkey=Gene;locus_tag=Dshi_2929
NC_009952.1	RefSeq	CDS	3086930	3087763	.	-	0	ID=cds2920;Name=YP_001534263.1;Parent=gene2966;Note=COG: COG0596 - Predicted hydrolases or acyltransferases %28alpha%2Fbeta hydrolase superfamily%29%3B PFAM: PF00561%3B PRINTS: PR00412%2C PR00111%3B PROSITE: PS00120;Dbxref=Genbank:YP_001534263.1,GeneID:5710780;gbkey=CDS;product=putative alpha%2Fbeta hydrolase;protein_id=YP_001534263.1;transl_table=11
NC_009952.1	RefSeq	gene	3087763	3088362	.	-	.	ID=gene2967;Name=Dshi_2930;Dbxref=GeneID:5710781;gbkey=Gene;locus_tag=Dshi_2930
NC_009952.1	RefSeq	CDS	3087763	3088362	.	-	0	ID=cds2921;Name=YP_001534264.1;Parent=gene2967;Note=COG: COG3917 - 2-hydroxychromene-2-carboxylate isomerase%3B SWISSPROT Q51948: 2-hydroxychromene-2-carboxylate isomerase nahD;Dbxref=Genbank:YP_001534264.1,GeneID:5710781;gbkey=CDS;product=putative 2-hydroxychromene-2-carboxylate isomerase;protein_id=YP_001534264.1;transl_table=11
NC_009952.1	RefSeq	gene	3088497	3089519	.	+	.	ID=gene2968;Name=prs;Dbxref=GeneID:5710782;gbkey=Gene;gene=prs;locus_tag=Dshi_2931
NC_009952.1	RefSeq	CDS	3088497	3089519	.	+	0	ID=cds2922;Name=YP_001534265.1;Parent=gene2968;Note=SWISSPROT P0A717: ribose-phosphate pyrophosphokinase%3B TIGRFAM: TIGR01251 ribose-phosphate pyrophosphokinase%3B COG: COG0462 - Phosphoribosylpyrophosphate synthetase%3B PFAM: PF00156%3B PROSITE: PS00114;Dbxref=Genbank:YP_001534265.1,GeneID:5710782;gbkey=CDS;gene=prs;product=ribose-phosphate pyrophosphokinase;protein_id=YP_001534265.1;transl_table=11
NC_009952.1	RefSeq	gene	3089529	3089879	.	-	.	ID=gene2969;Name=Dshi_2932;Dbxref=GeneID:5710783;gbkey=Gene;locus_tag=Dshi_2932
NC_009952.1	RefSeq	CDS	3089529	3089879	.	-	0	ID=cds2923;Name=YP_001534266.1;Parent=gene2969;Note=associated with ATP synthase gene cluster;Dbxref=Genbank:YP_001534266.1,GeneID:5710783;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534266.1;transl_table=11
NC_009952.1	RefSeq	gene	3089986	3090381	.	-	.	ID=gene2970;Name=atpC1;Dbxref=GeneID:5710784;gbkey=Gene;gene=atpC1;locus_tag=Dshi_2933
NC_009952.1	RefSeq	CDS	3089986	3090381	.	-	0	ID=cds2924;Name=YP_001534267.1;Parent=gene2970;Note=PFAM: PF02823%3B TIGRFAM: TIGR01216 ATP synthase%2C F1 epsilon subunit %28delta in mitochondria%29%3B COG: COG0355 - F0F1-type ATP synthase%2C epsilon subunit %28mitochondrial delta subunit%29;Dbxref=Genbank:YP_001534267.1,GeneID:5710784;gbkey=CDS;gene=atpC1;product=ATP synhtase epsilon chain;protein_id=YP_001534267.1;transl_table=11
NC_009952.1	RefSeq	gene	3090391	3091815	.	-	.	ID=gene2971;Name=atpD2;Dbxref=GeneID:5710785;gbkey=Gene;gene=atpD2;locus_tag=Dshi_2934
NC_009952.1	RefSeq	CDS	3090391	3091815	.	-	0	ID=cds2925;Name=YP_001534268.1;Parent=gene2971;Note=Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit;Dbxref=Genbank:YP_001534268.1,GeneID:5710785;gbkey=CDS;gene=atpD2;product=F0F1 ATP synthase subunit beta;protein_id=YP_001534268.1;transl_table=11
NC_009952.1	RefSeq	gene	3091833	3092705	.	-	.	ID=gene2972;Name=atpG2;Dbxref=GeneID:5710786;gbkey=Gene;gene=atpG2;locus_tag=Dshi_2935
NC_009952.1	RefSeq	CDS	3091833	3092705	.	-	0	ID=cds2926;Name=YP_001534269.1;Parent=gene2972;Note=Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit;Dbxref=Genbank:YP_001534269.1,GeneID:5710786;gbkey=CDS;gene=atpG2;product=F0F1 ATP synthase subunit gamma;protein_id=YP_001534269.1;transl_table=11
NC_009952.1	RefSeq	gene	3092718	3094256	.	-	.	ID=gene2973;Name=atpA1;Dbxref=GeneID:5710787;gbkey=Gene;gene=atpA1;locus_tag=Dshi_2936
NC_009952.1	RefSeq	CDS	3092718	3094256	.	-	0	ID=cds2927;Name=YP_001534270.1;Parent=gene2973;Note=produces ATP from ADP in the presence of a proton gradient across the membrane%3B the alpha chain is a catalytic subunit;Dbxref=Genbank:YP_001534270.1,GeneID:5710787;gbkey=CDS;gene=atpA1;product=F0F1 ATP synthase subunit alpha;protein_id=YP_001534270.1;transl_table=11
NC_009952.1	RefSeq	gene	3094257	3094817	.	-	.	ID=gene2974;Name=atpH;Dbxref=GeneID:5710788;gbkey=Gene;gene=atpH;locus_tag=Dshi_2937
NC_009952.1	RefSeq	CDS	3094257	3094817	.	-	0	ID=cds2928;Name=YP_001534271.1;Parent=gene2974;Note=SWISSPROT P72244: ATP synthase delta chain%3B TIGRFAM: TIGR01145 ATP synthase%2C F1 delta subunit%3B COG: COG0712 - F0F1-type ATP synthase%2C delta subunit %28mitochondrial oligomycin sensitivity protein%29%3B PFAM: PF00213%3B PROSITE: PS00389;Dbxref=Genbank:YP_001534271.1,GeneID:5710788;gbkey=CDS;gene=atpH;product=ATP synthase subunit delta;protein_id=YP_001534271.1;transl_table=11
NC_009952.1	RefSeq	gene	3095104	3095874	.	-	.	ID=gene2975;Name=Dshi_2938;Dbxref=GeneID:5710789;gbkey=Gene;locus_tag=Dshi_2938
NC_009952.1	RefSeq	CDS	3095104	3095874	.	-	0	ID=cds2929;Name=YP_001534272.1;Parent=gene2975;Dbxref=Genbank:YP_001534272.1,GeneID:5710789;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534272.1;transl_table=11
NC_009952.1	RefSeq	gene	3096331	3098658	.	+	.	ID=gene2976;Name=clpA;Dbxref=GeneID:5710790;gbkey=Gene;gene=clpA;locus_tag=Dshi_2939
NC_009952.1	RefSeq	CDS	3096331	3098658	.	+	0	ID=cds2930;Name=YP_001534273.1;Parent=gene2976;Note=SWISSPROT P0ABH9: ATP-dependent Clp protease ATP-binding subunit%3B TIGRFAM: TIGR02639 ATP-dependent Clp protease ATP-binding subunit clpA%3B COG: COG0542 - ATPases with chaperone activity%2C ATP-binding subunit%3B PFAM: PF00004%2C PF02861%2C PF07724;Dbxref=Genbank:YP_001534273.1,GeneID:5710790;gbkey=CDS;gene=clpA;product=ATP-dependent Clp protease ATP-binding subunit;protein_id=YP_001534273.1;transl_table=11
NC_009952.1	RefSeq	gene	3098707	3100653	.	-	.	ID=gene2977;Name=Dshi_2940;Dbxref=GeneID:5710791;gbkey=Gene;locus_tag=Dshi_2940
NC_009952.1	RefSeq	CDS	3098707	3100653	.	-	0	ID=cds2931;Name=YP_001534274.1;Parent=gene2977;Note=COG: COG1360 - Flagellar motor protein%3B PFAM: PF00691%3B PROSITE: PS51123%3B related to OmpA;Dbxref=Genbank:YP_001534274.1,GeneID:5710791;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534274.1;transl_table=11
NC_009952.1	RefSeq	gene	3100657	3101940	.	-	.	ID=gene2978;Name=Dshi_2941;Dbxref=GeneID:5710792;gbkey=Gene;locus_tag=Dshi_2941
NC_009952.1	RefSeq	CDS	3100657	3101940	.	-	0	ID=cds2932;Name=YP_001534275.1;Parent=gene2978;Dbxref=Genbank:YP_001534275.1,GeneID:5710792;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534275.1;transl_table=11
NC_009952.1	RefSeq	gene	3102031	3102573	.	-	.	ID=gene2979;Name=Dshi_2942;Dbxref=GeneID:5710793;gbkey=Gene;locus_tag=Dshi_2942
NC_009952.1	RefSeq	CDS	3102031	3102573	.	-	0	ID=cds2933;Name=YP_001534276.1;Parent=gene2979;Note=PFAM: PF04752 - ChaC-like protein%3B SWISSPROT P39163: Cation transport protein chaC%3B COG: COG3703 - Uncharacterized protein involved in cation transport;Dbxref=Genbank:YP_001534276.1,GeneID:5710793;gbkey=CDS;product=putative cation transport protein;protein_id=YP_001534276.1;transl_table=11
NC_009952.1	RefSeq	gene	3102640	3103638	.	+	.	ID=gene2980;Name=Dshi_2943;Dbxref=GeneID:5710794;gbkey=Gene;locus_tag=Dshi_2943
NC_009952.1	RefSeq	CDS	3102640	3103638	.	+	0	ID=cds2934;Name=YP_001534277.1;Parent=gene2980;Dbxref=Genbank:YP_001534277.1,GeneID:5710794;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534277.1;transl_table=11
NC_009952.1	RefSeq	gene	3103635	3104450	.	-	.	ID=gene2981;Name=Dshi_2944;Dbxref=GeneID:5710795;gbkey=Gene;locus_tag=Dshi_2944
NC_009952.1	RefSeq	CDS	3103635	3104450	.	-	0	ID=cds2935;Name=YP_001534278.1;Parent=gene2981;Note=COG: COG3921 - Uncharacterized protein conserved in bacteria%3B PFAM: PF06904%3B related to extensin;Dbxref=Genbank:YP_001534278.1,GeneID:5710795;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534278.1;transl_table=11
NC_009952.1	RefSeq	gene	3104447	3105388	.	-	.	ID=gene2982;Name=tyrC;Dbxref=GeneID:5710796;gbkey=Gene;gene=tyrC;locus_tag=Dshi_2945
NC_009952.1	RefSeq	CDS	3104447	3105388	.	-	0	ID=cds2936;Name=YP_001534279.1;Parent=gene2982;Note=dual function enzyme catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate and the formation of tyrosine from arogenate;Dbxref=Genbank:YP_001534279.1,GeneID:5710796;gbkey=CDS;gene=tyrC;product=cyclohexadienyl dehydrogenase;protein_id=YP_001534279.1;transl_table=11
NC_009952.1	RefSeq	gene	3105385	3106470	.	-	.	ID=gene2983;Name=hisC;Dbxref=GeneID:5710797;gbkey=Gene;gene=hisC;locus_tag=Dshi_2946
NC_009952.1	RefSeq	CDS	3105385	3106470	.	-	0	ID=cds2937;Name=YP_001534280.1;Parent=gene2983;Note=catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis;Dbxref=Genbank:YP_001534280.1,GeneID:5710797;gbkey=CDS;gene=hisC;product=histidinol-phosphate aminotransferase;protein_id=YP_001534280.1;transl_table=11
NC_009952.1	RefSeq	gene	3106547	3107965	.	-	.	ID=gene2984;Name=hss;Dbxref=GeneID:5710798;gbkey=Gene;gene=hss;locus_tag=Dshi_2947
NC_009952.1	RefSeq	CDS	3106547	3107965	.	-	0	ID=cds2938;Name=YP_001534281.1;Parent=gene2984;Note=SWISSPROT O32323: Homospermidine synthase%3B PFAM: PF06408 - Homospermidine synthase%3B COG: COG5310 - Homospermidine synthase;Dbxref=Genbank:YP_001534281.1,GeneID:5710798;gbkey=CDS;gene=hss;product=homospermidine synthase;protein_id=YP_001534281.1;transl_table=11
NC_009952.1	RefSeq	gene	3108054	3108674	.	-	.	ID=gene2985;Name=rpsD;Dbxref=GeneID:5710799;gbkey=Gene;gene=rpsD;locus_tag=Dshi_2948
NC_009952.1	RefSeq	CDS	3108054	3108674	.	-	0	ID=cds2939;Name=YP_001534282.1;Parent=gene2985;Note=primary rRNA binding protein%3B nucleates 30S assembly%3B involved in translational accuracy with proteins S5 and S12%3B interacts with protein S5%3B involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA%3B interacts with transcription complex and functions similar to protein NusA in antitermination;Dbxref=Genbank:YP_001534282.1,GeneID:5710799;gbkey=CDS;gene=rpsD;product=30S ribosomal protein S4;protein_id=YP_001534282.1;transl_table=11
NC_009952.1	RefSeq	gene	3109029	3111326	.	-	.	ID=gene2986;Name=Dshi_2949;Dbxref=GeneID:5710800;gbkey=Gene;locus_tag=Dshi_2949
NC_009952.1	RefSeq	CDS	3109029	3111326	.	-	0	ID=cds2940;Name=YP_001534283.1;Parent=gene2986;Note=TIGRFAM: TIGR02504 ribonucleoside-diphosphate reductase%2C adenosylcobalamin-dependent%3B COG: COG0209 - Ribonucleotide reductase%2C alpha subunit;Dbxref=Genbank:YP_001534283.1,GeneID:5710800;gbkey=CDS;product=putative Vitamin B12-dependent ribonucleotide reductase;protein_id=YP_001534283.1;transl_table=11
NC_009952.1	RefSeq	gene	3111468	3111923	.	+	.	ID=gene2987;Name=Dshi_2950;Dbxref=GeneID:5710801;gbkey=Gene;locus_tag=Dshi_2950
NC_009952.1	RefSeq	CDS	3111468	3111923	.	+	0	ID=cds2941;Name=YP_001534284.1;Parent=gene2987;Note=PFAM: PF07370 - Protein of unknown function %28DUF1489%29%3B COG: COG5458 - Uncharacterized conserved protein;Dbxref=Genbank:YP_001534284.1,GeneID:5710801;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534284.1;transl_table=11
NC_009952.1	RefSeq	gene	3112137	3113279	.	-	.	ID=gene2988;Name=Dshi_2951;Dbxref=GeneID:5710802;gbkey=Gene;locus_tag=Dshi_2951
NC_009952.1	RefSeq	CDS	3112137	3113279	.	-	0	ID=cds2942;Name=YP_001534285.1;Parent=gene2988;Note=COG: COG0031 - Cysteine synthase%3B PFAM: PF00291%3B PROSITE: PS00216%3B similar to cysteine synthase;Dbxref=Genbank:YP_001534285.1,GeneID:5710802;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534285.1;transl_table=11
NC_009952.1	RefSeq	gene	3113286	3114131	.	-	.	ID=gene2989;Name=panC;Dbxref=GeneID:5710803;gbkey=Gene;gene=panC;locus_tag=Dshi_2952
NC_009952.1	RefSeq	CDS	3113286	3114131	.	-	0	ID=cds2943;Name=YP_001534286.1;Parent=gene2989;Note=TIGRFAM: TIGR00018 pantoate--beta-alanine ligase%3B COG: COG0414 - Panthothenate synthetase%3B PFAM: PF02569 - Pantoate-beta-alanine ligase;Dbxref=Genbank:YP_001534286.1,GeneID:5710803;gbkey=CDS;gene=panC;product=pantothenate synthase;protein_id=YP_001534286.1;transl_table=11
NC_009952.1	RefSeq	gene	3114128	3114847	.	-	.	ID=gene2990;Name=hisG;Dbxref=GeneID:5710804;gbkey=Gene;gene=hisG;locus_tag=Dshi_2953
NC_009952.1	RefSeq	CDS	3114128	3114847	.	-	0	ID=cds2944;Name=YP_001534287.1;Parent=gene2990;Note=short form of enzyme%3B requires HisZ for function%3B catalyzes the formation of N%27-5%27-phosphoribosyl-ATP from phosphoribosyl pyrophosphate%3B crucial role in histidine biosynthesis%3B forms heteromultimer of HisG and HisZ;Dbxref=Genbank:YP_001534287.1,GeneID:5710804;gbkey=CDS;gene=hisG;product=ATP phosphoribosyltransferase catalytic subunit;protein_id=YP_001534287.1;transl_table=11
NC_009952.1	RefSeq	gene	3114844	3115950	.	-	.	ID=gene2991;Name=hisZ;Dbxref=GeneID:5710805;gbkey=Gene;gene=hisZ;locus_tag=Dshi_2954
NC_009952.1	RefSeq	CDS	3114844	3115950	.	-	0	ID=cds2945;Name=YP_001534288.1;Parent=gene2991;Note=May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine;Dbxref=Genbank:YP_001534288.1,GeneID:5710805;gbkey=CDS;gene=hisZ;product=ATP phosphoribosyltransferase regulatory subunit;protein_id=YP_001534288.1;transl_table=11
NC_009952.1	RefSeq	gene	3115954	3117447	.	-	.	ID=gene2992;Name=hisS;Dbxref=GeneID:5710806;gbkey=Gene;gene=hisS;locus_tag=Dshi_2955
NC_009952.1	RefSeq	CDS	3115954	3117447	.	-	0	ID=cds2946;Name=YP_001534289.1;Parent=gene2992;Note=catalyzes a two-step reaction%2C first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA%3B class II aminoacyl-tRNA synthetase%3B forms homodimers%3B some organisms have a paralogous gene%2C hisZ%2C that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG;Dbxref=Genbank:YP_001534289.1,GeneID:5710806;gbkey=CDS;gene=hisS;product=histidyl-tRNA synthetase;protein_id=YP_001534289.1;transl_table=11
NC_009952.1	RefSeq	gene	3117536	3117745	.	+	.	ID=gene2993;Name=Dshi_2956;Dbxref=GeneID:5710807;gbkey=Gene;locus_tag=Dshi_2956
NC_009952.1	RefSeq	CDS	3117536	3117745	.	+	0	ID=cds2947;Name=YP_001534290.1;Parent=gene2993;Note=PFAM: PF04102- SlyX%3B similar to slyX;Dbxref=Genbank:YP_001534290.1,GeneID:5710807;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534290.1;transl_table=11
NC_009952.1	RefSeq	gene	3117972	3121466	.	-	.	ID=gene2994;Name=dnaE;Dbxref=GeneID:5710808;gbkey=Gene;gene=dnaE;locus_tag=Dshi_2957
NC_009952.1	RefSeq	CDS	3117972	3121466	.	-	0	ID=cds2948;Name=YP_001534291.1;Parent=gene2994;Note=catalyzes DNA-template-directed extension of the 3%27- end of a DNA strand by one nucleotide at a time%3B main replicative polymerase;Dbxref=Genbank:YP_001534291.1,GeneID:5710808;gbkey=CDS;gene=dnaE;product=DNA polymerase III subunit alpha;protein_id=YP_001534291.1;transl_table=11
NC_009952.1	RefSeq	gene	3121712	3123163	.	+	.	ID=gene2995;Name=xghB;Dbxref=GeneID:5710809;gbkey=Gene;gene=xghB;locus_tag=Dshi_2958
NC_009952.1	RefSeq	CDS	3121712	3123163	.	+	0	ID=cds2949;Name=YP_001534292.1;Parent=gene2995;Note=PFAM: PF00111%2C PF00941%2C PF01799%2C PF03450%3B TIGRFAM: TIGR02963 xanthine dehydrogenase%2C small subunit%3B COG: COG4630 - Xanthine dehydrogenase%2C iron-sulfur cluster and FAD-binding subunit A%3B iron-sulfur-binding subunit and FAD-binding subunit;Dbxref=Genbank:YP_001534292.1,GeneID:5710809;gbkey=CDS;gene=xghB;product=putative xanthine dehydrogenase;protein_id=YP_001534292.1;transl_table=11
NC_009952.1	RefSeq	gene	3123160	3125505	.	+	.	ID=gene2996;Name=xdhA;Dbxref=GeneID:5710810;gbkey=Gene;gene=xdhA;locus_tag=Dshi_2959
NC_009952.1	RefSeq	CDS	3123160	3125505	.	+	0	ID=cds2950;Name=YP_001534293.1;Parent=gene2996;Note=SWISSPROT Q46799: Xanthine dehydrogenase molybdenum-binding subunit%3B TIGRFAM: TIGR02965 xanthine dehydrogenase%2C molybdopterin binding subunit%3B COG: COG4631 - Xanthine dehydrogenase%2C molybdopterin-binding subunit B;Dbxref=Genbank:YP_001534293.1,GeneID:5710810;gbkey=CDS;gene=xdhA;product=xanthine dehydrogenase molybdenum-binding subunit;protein_id=YP_001534293.1;transl_table=11
NC_009952.1	RefSeq	gene	3125502	3126464	.	+	.	ID=gene2997;Name=xdhC;Dbxref=GeneID:5710811;gbkey=Gene;gene=xdhC;locus_tag=Dshi_2960
NC_009952.1	RefSeq	CDS	3125502	3126464	.	+	0	ID=cds2951;Name=YP_001534294.1;Parent=gene2997;Note=TIGRFAM: TIGR02964 xanthine dehydrogenase accessory protein XdhC%3B PFAM: PF02625%3B COG: COG1975 - Xanthine and CO dehydrogenases maturation factor%2C XdhC%2FCoxF family;Dbxref=Genbank:YP_001534294.1,GeneID:5710811;gbkey=CDS;gene=xdhC;product=putative xanthine dehydrogenase accessory protein;protein_id=YP_001534294.1;transl_table=11
NC_009952.1	RefSeq	gene	3126461	3127996	.	+	.	ID=gene2998;Name=xdhC;Dbxref=GeneID:5710812;gbkey=Gene;gene=xdhC;locus_tag=Dshi_2961
NC_009952.1	RefSeq	CDS	3126461	3127996	.	+	0	ID=cds2952;Name=YP_001534295.1;Parent=gene2998;Note=COG: COG3845 - ABC-type uncharacterized transport systems%2C ATPase components%3B PFAM: PF00005%3B PROSITE: PS00211%2C PS50893%3B SMART: SM00382;Dbxref=Genbank:YP_001534295.1,GeneID:5710812;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=YP_001534295.1;transl_table=11
NC_009952.1	RefSeq	gene	3128219	3129304	.	+	.	ID=gene2999;Name=Dshi_2962;Dbxref=GeneID:5710813;gbkey=Gene;locus_tag=Dshi_2962
NC_009952.1	RefSeq	CDS	3128219	3129304	.	+	0	ID=cds2953;Name=YP_001534296.1;Parent=gene2999;Note=COG: COG4603 - ABC-type uncharacterized transport system%2C permease component%3B PFAM: PF02653-Branched-chain amino acid transport system %2F permease component%3B permease component;Dbxref=Genbank:YP_001534296.1,GeneID:5710813;gbkey=CDS;product=putative ABC type branched chain amino acid transport system;protein_id=YP_001534296.1;transl_table=11
NC_009952.1	RefSeq	gene	3129327	3130253	.	+	.	ID=gene3000;Name=Dshi_2963;Dbxref=GeneID:5710814;gbkey=Gene;locus_tag=Dshi_2963
NC_009952.1	RefSeq	CDS	3129327	3130253	.	+	0	ID=cds2954;Name=YP_001534297.1;Parent=gene3000;Note=COG: COG1079 - Uncharacterized ABC-type transport system%2C permease component%3B PFAM: PF02653-Branched-chain amino acid transport system %2F permease component%3B permease component;Dbxref=Genbank:YP_001534297.1,GeneID:5710814;gbkey=CDS;product=putative ABC type branched chain amino acid transport system;protein_id=YP_001534297.1;transl_table=11
NC_009952.1	RefSeq	gene	3130346	3131509	.	+	.	ID=gene3001;Name=Dshi_2964;Dbxref=GeneID:5710815;gbkey=Gene;locus_tag=Dshi_2964
NC_009952.1	RefSeq	CDS	3130346	3131509	.	+	0	ID=cds2955;Name=YP_001534298.1;Parent=gene3001;Note=PFAM: PF02608%3B SUPERFAMILY: SSF53822;Dbxref=Genbank:YP_001534298.1,GeneID:5710815;gbkey=CDS;product=putative basic membrane protein;protein_id=YP_001534298.1;transl_table=11
NC_009952.1	RefSeq	gene	3131594	3131788	.	-	.	ID=gene3002;Name=Dshi_2965;Dbxref=GeneID:5710816;gbkey=Gene;locus_tag=Dshi_2965
NC_009952.1	RefSeq	CDS	3131594	3131788	.	-	0	ID=cds2956;Name=YP_001534299.1;Parent=gene3002;Dbxref=Genbank:YP_001534299.1,GeneID:5710816;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534299.1;transl_table=11
NC_009952.1	RefSeq	gene	3131957	3132778	.	-	.	ID=gene3003;Name=panB;Dbxref=GeneID:5710817;gbkey=Gene;gene=panB;locus_tag=Dshi_2966
NC_009952.1	RefSeq	CDS	3131957	3132778	.	-	0	ID=cds2957;Name=YP_001534300.1;Parent=gene3003;Note=TIGRFAM: TIGR00222 3-methyl-2-oxobutanoate hydroxymethyltransferase%3B COG: COG0413 - Ketopantoate hydroxymethyltransferase%3B PFAM: PF02548 Ketopantoate hydroxymethyltransferase;Dbxref=Genbank:YP_001534300.1,GeneID:5710817;gbkey=CDS;gene=panB;product=3-methyl-2-oxobutanoate hydroxymethyltransferase;protein_id=YP_001534300.1;transl_table=11
NC_009952.1	RefSeq	gene	3133015	3135510	.	+	.	ID=gene3004;Name=Dshi_2967;Dbxref=GeneID:5710818;gbkey=Gene;locus_tag=Dshi_2967
NC_009952.1	RefSeq	CDS	3133015	3135510	.	+	0	ID=cds2958;Name=YP_001534301.1;Parent=gene3004;Note=COG: COG0404 - Glycine cleavage system T protein %28aminomethyltransferase%29%3B PFAM: PF01266%2C PF01571%2C PF08669;Dbxref=Genbank:YP_001534301.1,GeneID:5710818;gbkey=CDS;product=bifunctional enzyme involved in glycine degradation;protein_id=YP_001534301.1;transl_table=11
NC_009952.1	RefSeq	gene	3135780	3136373	.	+	.	ID=gene3005;Name=Dshi_2968;Dbxref=GeneID:5710819;gbkey=Gene;locus_tag=Dshi_2968
NC_009952.1	RefSeq	CDS	3135780	3136373	.	+	0	ID=cds2959;Name=YP_001534302.1;Parent=gene3005;Dbxref=Genbank:YP_001534302.1,GeneID:5710819;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534302.1;transl_table=11
NC_009952.1	RefSeq	gene	3136386	3136724	.	-	.	ID=gene3006;Name=Dshi_2969;Dbxref=GeneID:5710820;gbkey=Gene;locus_tag=Dshi_2969
NC_009952.1	RefSeq	CDS	3136386	3136724	.	-	0	ID=cds2960;Name=YP_001534303.1;Parent=gene3006;Note=COG: COG0599 - Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit%3B TIGRFAM: TIGR00778%3B PFAM: PF02627%3B SUPERFAMILY: SSF69118%3B Gene3D: G3DSA:1.20.1290.10%3B related to alkylhydroxyperoxidase;Dbxref=Genbank:YP_001534303.1,GeneID:5710820;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534303.1;transl_table=11
NC_009952.1	RefSeq	gene	3136810	3137796	.	-	.	ID=gene3007;Name=gyaR;Dbxref=GeneID:5710821;gbkey=Gene;gene=gyaR;locus_tag=Dshi_2970
NC_009952.1	RefSeq	CDS	3136810	3137796	.	-	0	ID=cds2961;Name=YP_001534304.1;Parent=gene3007;Note=COG: COG1052 - Lactate dehydrogenase and related dehydrogenases%3B PFAM: PF00389%2C PF02826%3B PROSITE: PS00065%2C PS00671;Dbxref=Genbank:YP_001534304.1,GeneID:5710821;gbkey=CDS;gene=gyaR;product=glyoxylate reductase;protein_id=YP_001534304.1;transl_table=11
NC_009952.1	RefSeq	gene	3137930	3138544	.	+	.	ID=gene3008;Name=Dshi_2971;Dbxref=GeneID:5710822;gbkey=Gene;locus_tag=Dshi_2971
NC_009952.1	RefSeq	CDS	3137930	3138544	.	+	0	ID=cds2962;Name=YP_001534305.1;Parent=gene3008;Note=PFAM: PF06347%3B COG: COG3807 - Uncharacterized protein conserved in bacteria;Dbxref=Genbank:YP_001534305.1,GeneID:5710822;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534305.1;transl_table=11
NC_009952.1	RefSeq	gene	3138517	3139428	.	-	.	ID=gene3009;Name=Dshi_2972;Dbxref=GeneID:5710823;gbkey=Gene;locus_tag=Dshi_2972
NC_009952.1	RefSeq	CDS	3138517	3139428	.	-	0	ID=cds2963;Name=YP_001534306.1;Parent=gene3009;Note=PFAM: PF00989%2C PROSITE: PS50112%2C SMART: SM00091;Dbxref=Genbank:YP_001534306.1,GeneID:5710823;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534306.1;transl_table=11
NC_009952.1	RefSeq	gene	3139524	3141545	.	-	.	ID=gene3010;Name=dcp;Dbxref=GeneID:5710824;gbkey=Gene;gene=dcp;locus_tag=Dshi_2973
NC_009952.1	RefSeq	CDS	3139524	3141545	.	-	0	ID=cds2964;Name=YP_001534307.1;Parent=gene3010;Note=SWISSPROT P27236: Peptidyl-dipeptidase dcp%3B COG: COG0339 - Zn-dependent oligopeptidases%3B PFAM: PF01432%3B PROSITE: PS00142;Dbxref=Genbank:YP_001534307.1,GeneID:5710824;gbkey=CDS;gene=dcp;product=peptidyl-dipeptidase;protein_id=YP_001534307.1;transl_table=11
NC_009952.1	RefSeq	gene	3141645	3142685	.	-	.	ID=gene3011;Name=moeB;Dbxref=GeneID:5710825;gbkey=Gene;gene=moeB;locus_tag=Dshi_2974
NC_009952.1	RefSeq	CDS	3141645	3142685	.	-	0	ID=cds2965;Name=YP_001534308.1;Parent=gene3011;Note=SWISSPROT P12282: Molybdopterin biosynthesis protein moeB%3B COG: COG0476 - Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2%3B PFAM: PF00899%2C PF05237;Dbxref=Genbank:YP_001534308.1,GeneID:5710825;gbkey=CDS;gene=moeB;product=molydopterin biosynthesis protein;protein_id=YP_001534308.1;transl_table=11
NC_009952.1	RefSeq	gene	3142690	3143157	.	-	.	ID=gene3012;Name=dut;Dbxref=GeneID:5710826;gbkey=Gene;gene=dut;locus_tag=Dshi_2975
NC_009952.1	RefSeq	CDS	3142690	3143157	.	-	0	ID=cds2966;Name=YP_001534309.1;Parent=gene3012;Note=PFAM: PF00692- dUTPase%3B TIGRFAM: TIGR00576 deoxyuridine 5-triphosphate nucleotidohydrolase %28dut%29%3B COG: COG0756 - dUTPase;Dbxref=Genbank:YP_001534309.1,GeneID:5710826;gbkey=CDS;gene=dut;product=deoxyuridine 5%27-triphosphate nucleotidohydrolase;protein_id=YP_001534309.1;transl_table=11
NC_009952.1	RefSeq	gene	3143154	3144347	.	-	.	ID=gene3013;Name=coaBC;Dbxref=GeneID:5710827;gbkey=Gene;gene=coaBC;locus_tag=Dshi_2976
NC_009952.1	RefSeq	CDS	3143154	3144347	.	-	0	ID=cds2967;Name=YP_001534310.1;Parent=gene3013;Note=catalyzes the conjugation of cysteine to 4%27-phosphopantothenate to form 4-phosphopantothenoylcysteine%2C which is then decarboxylated to form 4%27-phosphopantotheine;Dbxref=Genbank:YP_001534310.1,GeneID:5710827;gbkey=CDS;gene=coaBC;product=bifunctional phosphopantothenoylcysteine decarboxylase%2Fphosphopantothenate synthase;protein_id=YP_001534310.1;transl_table=11
NC_009952.1	RefSeq	gene	3144414	3145166	.	-	.	ID=gene3014;Name=Dshi_2977;Dbxref=GeneID:5710828;gbkey=Gene;locus_tag=Dshi_2977
NC_009952.1	RefSeq	CDS	3144414	3145166	.	-	0	ID=cds2968;Name=YP_001534311.1;Parent=gene3014;Note=PFAM: PF04187 - Protein of unknown function DUF399%3B COG: COG3016 - Uncharacterized iron-regulated protein;Dbxref=Genbank:YP_001534311.1,GeneID:5710828;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534311.1;transl_table=11
NC_009952.1	RefSeq	gene	3145214	3146095	.	-	.	ID=gene3015;Name=rpoH2;Dbxref=GeneID:5710829;gbkey=Gene;gene=rpoH2;locus_tag=Dshi_2978
NC_009952.1	RefSeq	CDS	3145214	3146095	.	-	0	ID=cds2969;Name=YP_001534312.1;Parent=gene3015;Note=binds with the catalytic core of RNA polymerase to produce the holoenzyme%3B sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released%3B sigma-32 is responsible for the expression of heat shock promoters%3B there are paralogs in Rhizobium and Sinorhizobium%3B the proteins in this cluster act as secondary heat shock sigma factors%3B the Rhizobium sigma-32 factor may also be involved in exopolysaccharide production;Dbxref=Genbank:YP_001534312.1,GeneID:5710829;gbkey=CDS;gene=rpoH2;product=RNA polymerase factor sigma-32;protein_id=YP_001534312.1;transl_table=11
NC_009952.1	RefSeq	gene	3146213	3146737	.	+	.	ID=gene3016;Name=Dshi_2979;Dbxref=GeneID:5710830;gbkey=Gene;locus_tag=Dshi_2979
NC_009952.1	RefSeq	CDS	3146213	3146737	.	+	0	ID=cds2970;Name=YP_001534313.1;Parent=gene3016;Note=SWISSPROT P29931: Bifunctional adenosylcobalamin biosynthesis protein cobP%3B PFAM: PF02283 - Cobinamide kinase %2F cobinamide phosphate guanyltransferase%3B PIR: PIRSF006135 - bifunctional cobinamide kinase%2Fcobinamide phosphate guanyltransferase%3B COG: COG2087 - Adenosyl cobinamide kinase%2Fadenosyl cobinamide phosphate guanylyltransferase;Dbxref=Genbank:YP_001534313.1,GeneID:5710830;gbkey=CDS;product=putative bifunctional adenosylcobalamin biosynthesis protein;protein_id=YP_001534313.1;transl_table=11
NC_009952.1	RefSeq	gene	3146734	3147306	.	+	.	ID=gene3017;Name=Dshi_2980;Dbxref=GeneID:5710831;gbkey=Gene;locus_tag=Dshi_2980
NC_009952.1	RefSeq	CDS	3146734	3147306	.	+	0	ID=cds2971;Name=YP_001534314.1;Parent=gene3017;Note=PFAM: PF00300%3B related to phosphoglycerate mutase;Dbxref=Genbank:YP_001534314.1,GeneID:5710831;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534314.1;transl_table=11
NC_009952.1	RefSeq	gene	3147482	3148744	.	+	.	ID=gene3018;Name=Dshi_2981;Dbxref=GeneID:5710832;gbkey=Gene;locus_tag=Dshi_2981
NC_009952.1	RefSeq	CDS	3147482	3148744	.	+	0	ID=cds2972;Name=YP_001534315.1;Parent=gene3018;Note=COG: COG2041 - Sulfite oxidase and related enzymes%3B PFAM: PF00174%2C PF03404%3B PRINTS: PR00407%3B SUPERFAMILY: SSF56524%2C SSF81296;Dbxref=Genbank:YP_001534315.1,GeneID:5710832;gbkey=CDS;product=putative molydopterin-binding oxidoreductase;protein_id=YP_001534315.1;transl_table=11
NC_009952.1	RefSeq	gene	3148819	3149169	.	+	.	ID=gene3019;Name=Dshi_2982;Dbxref=GeneID:5710833;gbkey=Gene;locus_tag=Dshi_2982
NC_009952.1	RefSeq	CDS	3148819	3149169	.	+	0	ID=cds2973;Name=YP_001534316.1;Parent=gene3019;Note=PROSITE: PS51257%3B SUPERFAMILY: SSF46626%3B related to cytochrome c;Dbxref=Genbank:YP_001534316.1,GeneID:5710833;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534316.1;transl_table=11
NC_009952.1	RefSeq	gene	3149233	3150231	.	+	.	ID=gene3020;Name=Dshi_2983;Dbxref=GeneID:5710834;gbkey=Gene;locus_tag=Dshi_2983
NC_009952.1	RefSeq	CDS	3149233	3150231	.	+	0	ID=cds2974;Name=YP_001534317.1;Parent=gene3020;Note=COG:COG2130 - Putative NADP-dependent oxidoreductases%3B PFAM: PF00107%3B SUPERFAMILY: SSF50129%3B PANTHER: Alcohol dehydrogenase related%3B related to zinc-binding dehydrogenase;Dbxref=Genbank:YP_001534317.1,GeneID:5710834;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534317.1;transl_table=11
NC_009952.1	RefSeq	gene	3150311	3151009	.	+	.	ID=gene3021;Name=Dshi_2984;Dbxref=GeneID:5710835;gbkey=Gene;locus_tag=Dshi_2984
NC_009952.1	RefSeq	CDS	3150311	3151009	.	+	0	ID=cds2975;Name=YP_001534318.1;Parent=gene3021;Note=COG: COG0625 - Glutathione S-transferase%3B SUPERFAMILY: SSF52833%2C SSF47616%3B Gene3D: G3DSA:3.40.30.10%3B similar to glutathione S-transferase;Dbxref=Genbank:YP_001534318.1,GeneID:5710835;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534318.1;transl_table=11
NC_009952.1	RefSeq	gene	3151506	3152165	.	-	.	ID=gene3022;Name=Dshi_2985;Dbxref=GeneID:5710836;gbkey=Gene;locus_tag=Dshi_2985
NC_009952.1	RefSeq	CDS	3151506	3152165	.	-	0	ID=cds2976;Name=YP_001534319.1;Parent=gene3022;Note=COG: COG1802 - Transcriptional regulators%3B PFAM: PF00392%2C PF07729%3B PROSITE: PS50949%3B Gene3D: G3DSA:1.10.10.10%3B GntR type;Dbxref=Genbank:YP_001534319.1,GeneID:5710836;gbkey=CDS;product=HTH-type transcriptional regulator;protein_id=YP_001534319.1;transl_table=11
NC_009952.1	RefSeq	gene	3152197	3152889	.	-	.	ID=gene3023;Name=Dshi_2986;Dbxref=GeneID:5710837;gbkey=Gene;locus_tag=Dshi_2986
NC_009952.1	RefSeq	CDS	3152197	3152889	.	-	0	ID=cds2977;Name=YP_001534320.1;Parent=gene3023;Note=COG: COG1451 - Predicted metal-dependent hydrolase%3B PFAM: PF01863 - Protein of unknown function DUF45%3B PROSITE: PS00142;Dbxref=Genbank:YP_001534320.1,GeneID:5710837;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534320.1;transl_table=11
NC_009952.1	RefSeq	gene	3152992	3153318	.	+	.	ID=gene3024;Name=Dshi_2987;Dbxref=GeneID:5710838;gbkey=Gene;locus_tag=Dshi_2987
NC_009952.1	RefSeq	CDS	3152992	3153318	.	+	0	ID=cds2978;Name=YP_001534321.1;Parent=gene3024;Note=TIGRFAM: TIGR02300 conserved hypothetical protein%3B PROSITE: PS00018;Dbxref=Genbank:YP_001534321.1,GeneID:5710838;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534321.1;transl_table=11
NC_009952.1	RefSeq	gene	3153418	3153493	.	+	.	ID=gene3025;Name=Dshi_6047;Dbxref=GeneID:5710839;gbkey=Gene;locus_tag=Dshi_6047
NC_009952.1	RefSeq	tRNA	3153418	3153493	.	+	.	ID=rna46;Parent=gene3025;Dbxref=GeneID:5710839;codons=53;gbkey=tRNA;product=tRNA-Ala
NC_009952.1	RefSeq	exon	3153418	3153493	.	+	.	ID=id52;Parent=rna46;Dbxref=GeneID:5710839;codons=53;gbkey=tRNA;product=tRNA-Ala
NC_009952.1	RefSeq	gene	3153753	3154094	.	+	.	ID=gene3026;Name=Dshi_2988;Dbxref=GeneID:5710840;gbkey=Gene;locus_tag=Dshi_2988
NC_009952.1	RefSeq	CDS	3153753	3154094	.	+	0	ID=cds2979;Name=YP_001534322.1;Parent=gene3026;Note=PFAM: PF01906%3B COG: COG0393 - Uncharacterized conserved protein;Dbxref=Genbank:YP_001534322.1,GeneID:5710840;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534322.1;transl_table=11
NC_009952.1	RefSeq	gene	3154359	3154565	.	-	.	ID=gene3027;Name=Dshi_2989;Dbxref=GeneID:5710841;gbkey=Gene;locus_tag=Dshi_2989
NC_009952.1	RefSeq	CDS	3154359	3154565	.	-	0	ID=cds2980;Name=YP_001534323.1;Parent=gene3027;Note=PROSITE: PS51257%3B related to membrane lipoprotein;Dbxref=Genbank:YP_001534323.1,GeneID:5710841;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534323.1;transl_table=11
NC_009952.1	RefSeq	gene	3154721	3155620	.	+	.	ID=gene3028;Name=Dshi_2990;Dbxref=GeneID:5710842;gbkey=Gene;locus_tag=Dshi_2990
NC_009952.1	RefSeq	CDS	3154721	3155620	.	+	0	ID=cds2981;Name=YP_001534324.1;Parent=gene3028;Note=COG: COG4333 - Uncharacterized protein conserved in bacteria%3B PFAM: PF00126%2C PF03466%3B PROSITE: PS5093%3B Gene3D: G3DSA:1.10.10.10%3B LysR family;Dbxref=Genbank:YP_001534324.1,GeneID:5710842;gbkey=CDS;product=HTH-type transcriptional regulator;protein_id=YP_001534324.1;transl_table=11
NC_009952.1	RefSeq	gene	3155748	3156266	.	+	.	ID=gene3029;Name=Dshi_2991;Dbxref=GeneID:5710843;gbkey=Gene;locus_tag=Dshi_2991
NC_009952.1	RefSeq	CDS	3155748	3156266	.	+	0	ID=cds2982;Name=YP_001534325.1;Parent=gene3029;Note=PFAM: PF07799-Protein of unknown function %28DUF1643%29%3B COG: COG4333 - Uncharacterized protein conserved in bacteria;Dbxref=Genbank:YP_001534325.1,GeneID:5710843;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534325.1;transl_table=11
NC_009952.1	RefSeq	gene	3156259	3157146	.	+	.	ID=gene3030;Name=dehH;Dbxref=GeneID:5710844;gbkey=Gene;gene=dehH;locus_tag=Dshi_2992
NC_009952.1	RefSeq	CDS	3156259	3157146	.	+	0	ID=cds2983;Name=YP_001534326.1;Parent=gene3030;Note=SWISSPROT Q01398: Haloacetate dehalogenase H-1%3B COG: COG0596 - Predicted hydrolases or acyltransferases %28alpha%2Fbeta hydrolase superfamily%29%3B PFAM: PF00561%3B PRINTS: PR00412%2C PR00111;Dbxref=Genbank:YP_001534326.1,GeneID:5710844;gbkey=CDS;gene=dehH;product=Haloacetate dehalogenase H-1;protein_id=YP_001534326.1;transl_table=11
NC_009952.1	RefSeq	gene	3157143	3157856	.	-	.	ID=gene3031;Name=dehH;Dbxref=GeneID:5710845;gbkey=Gene;gene=dehH;locus_tag=Dshi_2993
NC_009952.1	RefSeq	CDS	3157143	3157856	.	-	0	ID=cds2984;Name=YP_001534327.1;Parent=gene3031;Dbxref=Genbank:YP_001534327.1,GeneID:5710845;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534327.1;transl_table=11
NC_009952.1	RefSeq	gene	3158099	3158368	.	+	.	ID=gene3032;Name=rpsO;Dbxref=GeneID:5710846;gbkey=Gene;gene=rpsO;locus_tag=Dshi_2994
NC_009952.1	RefSeq	CDS	3158099	3158368	.	+	0	ID=cds2985;Name=YP_001534328.1;Parent=gene3032;Note=primary rRNA binding protein%3B helps nucleate assembly of 30S%3B binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA%3B autoregulates translation through interactions with the mRNA leader sequence;Dbxref=Genbank:YP_001534328.1,GeneID:5710846;gbkey=CDS;gene=rpsO;product=30S ribosomal protein S15;protein_id=YP_001534328.1;transl_table=11
NC_009952.1	RefSeq	gene	3158467	3158823	.	-	.	ID=gene3033;Name=Dshi_2995;Dbxref=GeneID:5710847;gbkey=Gene;locus_tag=Dshi_2995
NC_009952.1	RefSeq	CDS	3158467	3158823	.	-	0	ID=cds2986;Name=YP_001534329.1;Parent=gene3033;Dbxref=Genbank:YP_001534329.1,GeneID:5710847;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534329.1;transl_table=11
NC_009952.1	RefSeq	gene	3158863	3159771	.	-	.	ID=gene3034;Name=Dshi_2996;Dbxref=GeneID:5710848;gbkey=Gene;locus_tag=Dshi_2996
NC_009952.1	RefSeq	CDS	3158863	3159771	.	-	0	ID=cds2987;Name=YP_001534330.1;Parent=gene3034;Note=COG: COG3568 - Metal-dependent hydrolase%3B PFAM: PF03372%3B PROSITE: PS51257%3B SUPERFAMILY: SSF56219%3B similar to Endonuclease%2FExonuclease%2FPhosphatase family;Dbxref=Genbank:YP_001534330.1,GeneID:5710848;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534330.1;transl_table=11
NC_009952.1	RefSeq	gene	3159996	3162131	.	+	.	ID=gene3035;Name=pnp;Dbxref=GeneID:5710849;gbkey=Gene;gene=pnp;locus_tag=Dshi_2997
NC_009952.1	RefSeq	CDS	3159996	3162131	.	+	0	ID=cds2988;Name=YP_001534331.1;Parent=gene3035;Note=SWISSPROT P05055: Polyribonucleotide nucleotidyltransferase%3B COG: COG1185 - Polyribonucleotide nucleotidyltransferase %28polynucleotide phosphorylase%29%3B PFAM: PF01138%2C PF00575%2C PF00013%2C PF03725%2C PF03726%3B SMART: SM00322;Dbxref=Genbank:YP_001534331.1,GeneID:5710849;gbkey=CDS;gene=pnp;product=polynucleotide phosphorylase%2Fpolyadenylase;protein_id=YP_001534331.1;transl_table=11
NC_009952.1	RefSeq	gene	3162333	3164813	.	+	.	ID=gene3036;Name=Dshi_2998;Dbxref=GeneID:5710850;gbkey=Gene;locus_tag=Dshi_2998
NC_009952.1	RefSeq	CDS	3162333	3164813	.	+	0	ID=cds2989;Name=YP_001534332.1;Parent=gene3036;Note=COG: COG0668 - Small-conductance mechanosensitive channel%3B PFAM: PF00924%3B SUPERFAMILY: SSF82689%2C SSF82861%2C SSF50182;Dbxref=Genbank:YP_001534332.1,GeneID:5710850;gbkey=CDS;product=putative mechanosensitive ion channel;protein_id=YP_001534332.1;transl_table=11
NC_009952.1	RefSeq	gene	3164958	3166478	.	-	.	ID=gene3037;Name=fadD1;Dbxref=GeneID:5710851;gbkey=Gene;gene=fadD1;locus_tag=Dshi_2999
NC_009952.1	RefSeq	CDS	3164958	3166478	.	-	0	ID=cds2990;Name=YP_001534333.1;Parent=gene3037;Note=catalyzes the formation of malonyl-CoA from malonate and CoA;Dbxref=Genbank:YP_001534333.1,GeneID:5710851;gbkey=CDS;gene=fadD1;product=malonyl-CoA synthase;protein_id=YP_001534333.1;transl_table=11
NC_009952.1	RefSeq	gene	3166482	3167735	.	-	.	ID=gene3038;Name=mcd;Dbxref=GeneID:5710852;gbkey=Gene;gene=mcd;locus_tag=Dshi_3000
NC_009952.1	RefSeq	CDS	3166482	3167735	.	-	0	ID=cds2991;Name=YP_001534334.1;Parent=gene3038;Note=PFAM: Malonyl-CoA decarboxylase KEGG: rde:RD1_1475 malonyl-CoA decarboxylase. Good Pfam hit%2C good BLAST hit to several Roseobacter species%2C RBS 10nt upstream;Dbxref=Genbank:YP_001534334.1,GeneID:5710852;gbkey=CDS;gene=mcd;product=malonyl-CoA decarboxylase;protein_id=YP_001534334.1;transl_table=11
NC_009952.1	RefSeq	gene	3167732	3169048	.	-	.	ID=gene3039;Name=dctM2;Dbxref=GeneID:5710853;gbkey=Gene;gene=dctM2;locus_tag=Dshi_3001
NC_009952.1	RefSeq	CDS	3167732	3169048	.	-	0	ID=cds2992;Name=YP_001534335.1;Parent=gene3039;Note=TIGRFAM: TRAP dicarboxylate transporter%2C DctM subunit PFAM: Citrate transporter%3B TRAP C4-dicarboxylate transport system permease DctM subunit KEGG: rde:RD1_1476 TrapT family%2C DctM subunit%2C putative. Good BLAST hit to Rhodobacterales%2C gene cluster;Dbxref=Genbank:YP_001534335.1,GeneID:5710853;gbkey=CDS;gene=dctM2;product=TRAP dicarboxylate transporter subunit DctM;protein_id=YP_001534335.1;transl_table=11
NC_009952.1	RefSeq	gene	3169048	3169599	.	-	.	ID=gene3040;Name=dctQ4;Dbxref=GeneID:5710854;gbkey=Gene;gene=dctQ4;locus_tag=Dshi_3002
NC_009952.1	RefSeq	CDS	3169048	3169599	.	-	0	ID=cds2993;Name=YP_001534336.1;Parent=gene3040;Note=PFAM: Tripartite ATP-independent periplasmic transporter DctQ component . BLAST hit to Proteobacteria;Dbxref=Genbank:YP_001534336.1,GeneID:5710854;gbkey=CDS;gene=dctQ4;product=TRAP dicarboxylate transporter subunit DctQ;protein_id=YP_001534336.1;transl_table=11
NC_009952.1	RefSeq	gene	3169667	3170650	.	-	.	ID=gene3041;Name=dctP4;Dbxref=GeneID:5710855;gbkey=Gene;gene=dctP4;locus_tag=Dshi_3003
NC_009952.1	RefSeq	CDS	3169667	3170650	.	-	0	ID=cds2994;Name=YP_001534337.1;Parent=gene3041;Note=PFAM: TRAP dicarboxylate transporter- DctP subunit KEGG: rde:RD1_1478 C4-dicarboxylate transport system C4-dicarboxylate-binding protein%2C putative. BLAST hit%2C good RBS 6nt upstream;Dbxref=Genbank:YP_001534337.1,GeneID:5710855;gbkey=CDS;gene=dctP4;product=TRAP dicarboxylate transporter subunit DctP;protein_id=YP_001534337.1;transl_table=11
NC_009952.1	RefSeq	gene	3170785	3171441	.	+	.	ID=gene3042;Name=Dshi_3004;Dbxref=GeneID:5710856;gbkey=Gene;locus_tag=Dshi_3004
NC_009952.1	RefSeq	CDS	3170785	3171441	.	+	0	ID=cds2995;Name=YP_001534338.1;Parent=gene3042;Note=PFAM: regulatory protein GntR HTH%3B GntR domain protein KEGG: rde:RD1_1479 GntR-family transcription regulator%2C putative%3B GntR family;Dbxref=Genbank:YP_001534338.1,GeneID:5710856;gbkey=CDS;product=transcriptional regulator;protein_id=YP_001534338.1;transl_table=11
NC_009952.1	RefSeq	gene	3171549	3171857	.	+	.	ID=gene3043;Name=Dshi_3005;Dbxref=GeneID:5710857;gbkey=Gene;locus_tag=Dshi_3005
NC_009952.1	RefSeq	CDS	3171549	3171857	.	+	0	ID=cds2996;Name=YP_001534339.1;Parent=gene3043;Dbxref=Genbank:YP_001534339.1,GeneID:5710857;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534339.1;transl_table=11
NC_009952.1	RefSeq	gene	3171858	3172556	.	-	.	ID=gene3044;Name=rpe;Dbxref=GeneID:5710858;gbkey=Gene;gene=rpe;locus_tag=Dshi_3006
NC_009952.1	RefSeq	CDS	3171858	3172556	.	-	0	ID=cds2997;Name=YP_001534340.1;Parent=gene3044;Note=PFAM: ribulose-phosphate 3-epimerase KEGG: rsp:RSP_2864 pentose-5-phosphate-3-epimerase;Dbxref=Genbank:YP_001534340.1,GeneID:5710858;gbkey=CDS;gene=rpe;product=ribulose-phosphate 3-epimerase;protein_id=YP_001534340.1;transl_table=11
NC_009952.1	RefSeq	gene	3172670	3175837	.	-	.	ID=gene3045;Name=ybgG;Dbxref=GeneID:5710859;gbkey=Gene;gene=ybgG;locus_tag=Dshi_3007
NC_009952.1	RefSeq	CDS	3172670	3175837	.	-	0	ID=cds2998;Name=YP_001534341.1;Parent=gene3045;Note=PFAM: glycoside hydrolase family 38%3B glycosyl hydrolase 38 domain protein%3B Glycoside hydrolase family 38 central region KEGG: jan:Jann_2057 alpha-mannosidase;Dbxref=Genbank:YP_001534341.1,GeneID:5710859;gbkey=CDS;gene=ybgG;product=alpha-mannosidase;protein_id=YP_001534341.1;transl_table=11
NC_009952.1	RefSeq	gene	3175881	3177611	.	-	.	ID=gene3046;Name=Dshi_3008;Dbxref=GeneID:5710860;gbkey=Gene;locus_tag=Dshi_3008
NC_009952.1	RefSeq	CDS	3175881	3177611	.	-	0	ID=cds2999;Name=YP_001534342.1;Parent=gene3046;Note=PFAM: ABC transporter related%3B Oligopeptide%2Fdipeptide ABC transporter domain protein SMART: AAA ATPase KEGG: jan:Jann_2056 ABC transporter related. Contain duplicated ATPase%3B ATPase subunit;Dbxref=Genbank:YP_001534342.1,GeneID:5710860;gbkey=CDS;product=ABC transporter-like protein;protein_id=YP_001534342.1;transl_table=11
NC_009952.1	RefSeq	gene	3177623	3178567	.	-	.	ID=gene3047;Name=Dshi_3009;Dbxref=GeneID:5710861;gbkey=Gene;locus_tag=Dshi_3009
NC_009952.1	RefSeq	CDS	3177623	3178567	.	-	0	ID=cds3000;Name=YP_001534343.1;Parent=gene3047;Note=contain signal peptide und Transmembrane Helices%3B MSD;Dbxref=Genbank:YP_001534343.1,GeneID:5710861;gbkey=CDS;product=ABC transporter-like protein;protein_id=YP_001534343.1;transl_table=11
NC_009952.1	RefSeq	gene	3178564	3179583	.	-	.	ID=gene3048;Name=Dshi_3010;Dbxref=GeneID:5710862;gbkey=Gene;locus_tag=Dshi_3010
NC_009952.1	RefSeq	CDS	3178564	3179583	.	-	0	ID=cds3001;Name=YP_001534344.1;Parent=gene3048;Note=contain signal peptide und Transmembrane Helices%3B MSD;Dbxref=Genbank:YP_001534344.1,GeneID:5710862;gbkey=CDS;product=ABC transporter-like protein;protein_id=YP_001534344.1;transl_table=11
NC_009952.1	RefSeq	gene	3179758	3181491	.	-	.	ID=gene3049;Name=Dshi_3011;Dbxref=GeneID:5710863;gbkey=Gene;locus_tag=Dshi_3011
NC_009952.1	RefSeq	CDS	3179758	3181491	.	-	0	ID=cds3002;Name=YP_001534345.1;Parent=gene3049;Note=contain signal peptide%2C RBS 5nt upstream%3B periplasmic component;Dbxref=Genbank:YP_001534345.1,GeneID:5710863;gbkey=CDS;product=ABC transporter-like protein;protein_id=YP_001534345.1;transl_table=11
NC_009952.1	RefSeq	gene	3181609	3182298	.	-	.	ID=gene3050;Name=Dshi_3012;Dbxref=GeneID:5710864;gbkey=Gene;locus_tag=Dshi_3012
NC_009952.1	RefSeq	CDS	3181609	3182298	.	-	0	ID=cds3003;Name=YP_001534346.1;Parent=gene3050;Note=KEGG: jan:Jann_2052 Zn-dependent hydrolase of the beta-lactamase fold;Dbxref=Genbank:YP_001534346.1,GeneID:5710864;gbkey=CDS;product=putative Zn-dependent hydrolase of the beta-lactamase fold family;protein_id=YP_001534346.1;transl_table=11
NC_009952.1	RefSeq	gene	3182474	3182914	.	+	.	ID=gene3051;Name=Dshi_3013;Dbxref=GeneID:5710865;gbkey=Gene;locus_tag=Dshi_3013
NC_009952.1	RefSeq	CDS	3182474	3182914	.	+	0	ID=cds3004;Name=YP_001534347.1;Parent=gene3051;Note=PFAM: protein of unknown function DUF606 KEGG: jan:Jann_1137 protein of unknown function DUF606 %3B TMH;Dbxref=Genbank:YP_001534347.1,GeneID:5710865;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534347.1;transl_table=11
NC_009952.1	RefSeq	gene	3182924	3183751	.	-	.	ID=gene3052;Name=Dshi_3014;Dbxref=GeneID:5710866;gbkey=Gene;locus_tag=Dshi_3014
NC_009952.1	RefSeq	CDS	3182924	3183751	.	-	0	ID=cds3005;Name=YP_001534348.1;Parent=gene3052;Note=PFAM: Phytanoyl-CoA dioxygenase KEGG: jan:Jann_2051 phytanoyl-CoA dioxygenase;Dbxref=Genbank:YP_001534348.1,GeneID:5710866;gbkey=CDS;product=phytanoyl-CoA dioxygenase;protein_id=YP_001534348.1;transl_table=11
NC_009952.1	RefSeq	gene	3183841	3184692	.	+	.	ID=gene3053;Name=Dshi_3015;Dbxref=GeneID:5710867;gbkey=Gene;locus_tag=Dshi_3015
NC_009952.1	RefSeq	CDS	3183841	3184692	.	+	0	ID=cds3006;Name=YP_001534349.1;Parent=gene3053;Note=PFAM: helix-turn-helix- domain containing protein AraC type%3B AraC protein arabinose-binding%2Fdimerisation KEGG: jan:Jann_2050 transcriptional regulator%2C AraC family%3B AraC family;Dbxref=Genbank:YP_001534349.1,GeneID:5710867;gbkey=CDS;product=transcriptional regulator;protein_id=YP_001534349.1;transl_table=11
NC_009952.1	RefSeq	gene	3184761	3185780	.	+	.	ID=gene3054;Name=deoC;Dbxref=GeneID:5710868;gbkey=Gene;gene=deoC;locus_tag=Dshi_3016
NC_009952.1	RefSeq	CDS	3184761	3185780	.	+	0	ID=cds3007;Name=YP_001534350.1;Parent=gene3054;Note=KEGG: jan:Jann_0789 deoxyribose-phosphate aldolase TIGRFAM: deoxyribose-phosphate aldolase PFAM: deoxyribose-phosphate aldolase%2Fphospho-2-dehydro-3-deoxyheptonate aldolase%3B DERA%3B Deoxyriboaldolase;Dbxref=Genbank:YP_001534350.1,GeneID:5710868;gbkey=CDS;gene=deoC;product=deoxyribose-phosphate aldolase;protein_id=YP_001534350.1;transl_table=11
NC_009952.1	RefSeq	gene	3185825	3188167	.	+	.	ID=gene3055;Name=ald;Dbxref=GeneID:5710869;gbkey=Gene;gene=ald;locus_tag=Dshi_3017
NC_009952.1	RefSeq	CDS	3185825	3188167	.	+	0	ID=cds3008;Name=YP_001534351.1;Parent=gene3055;Note=PFAM: aldehyde dehydrogenase KEGG: sil:SPO3368 aldehyde dehydrogenase family protein;Dbxref=Genbank:YP_001534351.1,GeneID:5710869;gbkey=CDS;gene=ald;product=aldehyde dehydrogenase;protein_id=YP_001534351.1;transl_table=11
NC_009952.1	RefSeq	gene	3188327	3188980	.	-	.	ID=gene3056;Name=Dshi_3018;Dbxref=GeneID:5710870;gbkey=Gene;locus_tag=Dshi_3018
NC_009952.1	RefSeq	CDS	3188327	3188980	.	-	0	ID=cds3009;Name=YP_001534352.1;Parent=gene3056;Note=PFAM: protein of unknown function DUF1523;Dbxref=Genbank:YP_001534352.1,GeneID:5710870;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534352.1;transl_table=11
NC_009952.1	RefSeq	gene	3188982	3189224	.	-	.	ID=gene3057;Name=Dshi_3019;Dbxref=GeneID:5710871;gbkey=Gene;locus_tag=Dshi_3019
NC_009952.1	RefSeq	CDS	3188982	3189224	.	-	0	ID=cds3010;Name=YP_001534353.1;Parent=gene3057;Dbxref=Genbank:YP_001534353.1,GeneID:5710871;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534353.1;transl_table=11
NC_009952.1	RefSeq	gene	3189351	3190646	.	+	.	ID=gene3058;Name=dapE2;Dbxref=GeneID:5710872;gbkey=Gene;gene=dapE2;locus_tag=Dshi_3020
NC_009952.1	RefSeq	CDS	3189351	3190646	.	+	0	ID=cds3011;Name=YP_001534354.1;Parent=gene3058;Note=dapE-encoded N-succinyl-L%2CL-diaminopimelic acid desuccinylase %28DapE%29%2C catalyzes the hydrolysis of N-succinyl-L%2CLdiaminopimelate L%2CL-SDAP to L%2CL-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.;Dbxref=Genbank:YP_001534354.1,GeneID:5710872;gbkey=CDS;gene=dapE2;product=succinyl-diaminopimelate desuccinylase;protein_id=YP_001534354.1;transl_table=11
NC_009952.1	RefSeq	gene	3190673	3192130	.	+	.	ID=gene3059;Name=puuC;Dbxref=GeneID:5710873;gbkey=Gene;gene=puuC;locus_tag=Dshi_3021
NC_009952.1	RefSeq	CDS	3190673	3192130	.	+	0	ID=cds3012;Name=YP_001534355.1;Parent=gene3059;Note=PFAM: aldehyde dehydrogenase KEGG: sil:SPO0097 aldehyde dehydrogenase family protein%3B Gamma-Glu-gamma-aminobutyraldehyde dehydrogenase;Dbxref=Genbank:YP_001534355.1,GeneID:5710873;gbkey=CDS;gene=puuC;product=gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase;protein_id=YP_001534355.1;transl_table=11
NC_009952.1	RefSeq	gene	3192313	3193314	.	-	.	ID=gene3060;Name=Dshi_3022;Dbxref=GeneID:5710874;gbkey=Gene;locus_tag=Dshi_3022
NC_009952.1	RefSeq	CDS	3192313	3193314	.	-	0	ID=cds3013;Name=YP_001534356.1;Parent=gene3060;Note=PFAM: PfkB domain protein KEGG: jan:Jann_1671 PfkB%3B rde:RD1_0962 PfkB family kinase%2C putative;Dbxref=Genbank:YP_001534356.1,GeneID:5710874;gbkey=CDS;product=PfkB domain-containing protein;protein_id=YP_001534356.1;transl_table=11
NC_009952.1	RefSeq	gene	3193311	3193955	.	-	.	ID=gene3061;Name=nth;Dbxref=GeneID:5710875;gbkey=Gene;gene=nth;locus_tag=Dshi_3023
NC_009952.1	RefSeq	CDS	3193311	3193955	.	-	0	ID=cds3014;Name=YP_001534357.1;Parent=gene3061;Note=KEGG: sil:SPO3581 endonuclease III TIGRFAM: endonuclease III PFAM: helix-hairpin-helix motif%3B HhH-GPD family protein SMART: iron-sulfur cluster loop;Dbxref=Genbank:YP_001534357.1,GeneID:5710875;gbkey=CDS;gene=nth;product=endonuclease III;protein_id=YP_001534357.1;transl_table=11
NC_009952.1	RefSeq	gene	3194067	3194930	.	+	.	ID=gene3062;Name=ada;Dbxref=GeneID:5710876;gbkey=Gene;gene=ada;locus_tag=Dshi_3024
NC_009952.1	RefSeq	CDS	3194067	3194930	.	+	0	ID=cds3015;Name=YP_001534358.1;Parent=gene3062;Note=TIGRFAM: methylated-DNA--protein-cysteine methyltransferase PFAM: helix-turn-helix- domain containing protein AraC type%3B Methylated-DNA-%5Bprotein%5D-cysteine S-methyltransferase DNA binding KEGG: sil:SPO3578 ADA regulatory protein;Dbxref=Genbank:YP_001534358.1,GeneID:5710876;gbkey=CDS;gene=ada;product=ADA regulatory protein;protein_id=YP_001534358.1;transl_table=11
NC_009952.1	RefSeq	gene	3195037	3195663	.	+	.	ID=gene3063;Name=Dshi_3025;Dbxref=GeneID:5710877;gbkey=Gene;locus_tag=Dshi_3025
NC_009952.1	RefSeq	CDS	3195037	3195663	.	+	0	ID=cds3016;Name=YP_001534359.1;Parent=gene3063;Note=PFAM: OmpA%2FMotB domain protein%3B 17 kDa surface antigen KEGG: rsq:Rsph17025_0195 OmpA%2FMotB domain protein;Dbxref=Genbank:YP_001534359.1,GeneID:5710877;gbkey=CDS;product=OmpA%2FMotB domain-containing protein;protein_id=YP_001534359.1;transl_table=11
NC_009952.1	RefSeq	gene	3195719	3196486	.	+	.	ID=gene3064;Name=pdhR;Dbxref=GeneID:5710878;gbkey=Gene;gene=pdhR;locus_tag=Dshi_3026
NC_009952.1	RefSeq	CDS	3195719	3196486	.	+	0	ID=cds3017;Name=YP_001534360.1;Parent=gene3064;Note=PFAM: regulatory protein GntR HTH%3B GntR domain protein KEGG: rde:RD1_1326 pdhR%3B pyruvate dehydrogenase complex repressor;Dbxref=Genbank:YP_001534360.1,GeneID:5710878;gbkey=CDS;gene=pdhR;product=pyruvate dehydrogenase complex repressor;protein_id=YP_001534360.1;transl_table=11
NC_009952.1	RefSeq	gene	3196549	3197109	.	-	.	ID=gene3065;Name=atpF2;Dbxref=GeneID:5710879;gbkey=Gene;gene=atpF2;locus_tag=Dshi_3027
NC_009952.1	RefSeq	CDS	3196549	3197109	.	-	0	ID=cds3018;Name=YP_001534361.1;Parent=gene3065;Note=produces ATP from ADP in the presence of a proton gradient across the membrane%3B subunit B is part of the membrane proton channel.;Dbxref=Genbank:YP_001534361.1,GeneID:5710879;gbkey=CDS;gene=atpF2;product=F0F1 ATP synthase subunit B;protein_id=YP_001534361.1;transl_table=11
NC_009952.1	RefSeq	gene	3197114	3197638	.	-	.	ID=gene3066;Name=atpX;Dbxref=GeneID:5710880;gbkey=Gene;gene=atpX;locus_tag=Dshi_3028
NC_009952.1	RefSeq	CDS	3197114	3197638	.	-	0	ID=cds3019;Name=YP_001534362.1;Parent=gene3066;Note=produces ATP from ADP in the presence of a proton gradient across the membrane%3B subunit B%27 is part of the membrane proton channel.;Dbxref=Genbank:YP_001534362.1,GeneID:5710880;gbkey=CDS;gene=atpX;product=F0F1 ATP synthase subunit B%27;protein_id=YP_001534362.1;transl_table=11
NC_009952.1	RefSeq	gene	3197716	3197940	.	-	.	ID=gene3067;Name=atpE2;Dbxref=GeneID:5710881;gbkey=Gene;gene=atpE2;locus_tag=Dshi_3029
NC_009952.1	RefSeq	CDS	3197716	3197940	.	-	0	ID=cds3020;Name=YP_001534363.1;Parent=gene3067;Note=Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0;Dbxref=Genbank:YP_001534363.1,GeneID:5710881;gbkey=CDS;gene=atpE2;product=F0F1 ATP synthase subunit C;protein_id=YP_001534363.1;transl_table=11
NC_009952.1	RefSeq	gene	3198004	3198750	.	-	.	ID=gene3068;Name=atpB1;Dbxref=GeneID:5710882;gbkey=Gene;gene=atpB1;locus_tag=Dshi_3030
NC_009952.1	RefSeq	CDS	3198004	3198750	.	-	0	ID=cds3021;Name=YP_001534364.1;Parent=gene3068;Note=Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0;Dbxref=Genbank:YP_001534364.1,GeneID:5710882;gbkey=CDS;gene=atpB1;product=F0F1 ATP synthase subunit A;protein_id=YP_001534364.1;transl_table=11
NC_009952.1	RefSeq	gene	3198754	3199086	.	-	.	ID=gene3069;Name=atpI;Dbxref=GeneID:5710883;gbkey=Gene;gene=atpI;locus_tag=Dshi_3031
NC_009952.1	RefSeq	CDS	3198754	3199086	.	-	0	ID=cds3022;Name=YP_001534365.1;Parent=gene3069;Note=KEGG: rde:RD1_1321 ATP synthase F0%2C subunit I%3B I subunit;Dbxref=Genbank:YP_001534365.1,GeneID:5710883;gbkey=CDS;gene=atpI;product=ATP synthase F0;protein_id=YP_001534365.1;transl_table=11
NC_009952.1	RefSeq	gene	3199429	3201147	.	-	.	ID=gene3070;Name=Dshi_3032;Dbxref=GeneID:5710884;gbkey=Gene;locus_tag=Dshi_3032
NC_009952.1	RefSeq	CDS	3199429	3201147	.	-	0	ID=cds3023;Name=YP_001534366.1;Parent=gene3070;Note=PFAM: Heparinase II%2FIII family protein KEGG: rde:RD1_0654 hypothetical protein%3B sit:TM1040_0090 heparinase II%2FIII-like;Dbxref=Genbank:YP_001534366.1,GeneID:5710884;gbkey=CDS;product=heparinase II%2FIII family protein;protein_id=YP_001534366.1;transl_table=11
NC_009952.1	RefSeq	gene	3201216	3202547	.	-	.	ID=gene3071;Name=rsmB1;Dbxref=GeneID:5710885;gbkey=Gene;gene=rsmB1;locus_tag=Dshi_3033
NC_009952.1	RefSeq	CDS	3201216	3202547	.	-	0	ID=cds3024;Name=YP_001534367.1;Parent=gene3071;Note=PFAM: Fmu %28Sun%29 domain protein%3B NusB%2FRsmB%2FTIM44%3B methyltransferase small%3B Methyltransferase type 11 KEGG: rsh:Rsph17029_2765 Fmu %28Sun%29 domain protein%3B 16S rRNA m5C967 methyltransferase%3B rRNA %28cytosine-C%285%29-%29-methyltransferase;Dbxref=Genbank:YP_001534367.1,GeneID:5710885;gbkey=CDS;gene=rsmB1;product=ribosomal RNA small subunit methyltransferase B;protein_id=YP_001534367.1;transl_table=11
NC_009952.1	RefSeq	gene	3202651	3202875	.	+	.	ID=gene3072;Name=Dshi_3034;Dbxref=GeneID:5710886;gbkey=Gene;locus_tag=Dshi_3034
NC_009952.1	RefSeq	CDS	3202651	3202875	.	+	0	ID=cds3025;Name=YP_001534368.1;Parent=gene3072;Note=PFAM: protein of unknown function DUF1674;Dbxref=Genbank:YP_001534368.1,GeneID:5710886;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534368.1;transl_table=11
NC_009952.1	RefSeq	gene	3202894	3203289	.	-	.	ID=gene3073;Name=Dshi_3035;Dbxref=GeneID:5710887;gbkey=Gene;locus_tag=Dshi_3035
NC_009952.1	RefSeq	CDS	3202894	3203289	.	-	0	ID=cds3026;Name=YP_001534369.1;Parent=gene3073;Note=KEGG: jan:Jann_4038 hypothetical protein;Dbxref=Genbank:YP_001534369.1,GeneID:5710887;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534369.1;transl_table=11
NC_009952.1	RefSeq	gene	3203392	3206619	.	-	.	ID=gene3074;Name=Dshi_3036;Dbxref=GeneID:5710888;gbkey=Gene;locus_tag=Dshi_3036
NC_009952.1	RefSeq	CDS	3203392	3206619	.	-	0	ID=cds3027;Name=YP_001534370.1;Parent=gene3074;Note=colocated with MFP subunit%3B pfam00873%2C%3B RND family%2C RND subunit;Dbxref=Genbank:YP_001534370.1,GeneID:5710888;gbkey=CDS;product=efflux transporter;protein_id=YP_001534370.1;transl_table=11
NC_009952.1	RefSeq	gene	3206616	3207824	.	-	.	ID=gene3075;Name=Dshi_3037;Dbxref=GeneID:5710889;gbkey=Gene;locus_tag=Dshi_3037
NC_009952.1	RefSeq	CDS	3206616	3207824	.	-	0	ID=cds3028;Name=YP_001534371.1;Parent=gene3075;Note=colocated with RND subunit%3B TIGRFAM: efflux transporter%2C RND family%2C MFP subunit PFAM: secretion protein HlyD family protein KEGG: jan:Jann_1310 secretion protein HlyD%3B RND family%2C MFP subunit;Dbxref=Genbank:YP_001534371.1,GeneID:5710889;gbkey=CDS;product=efflux transporter;protein_id=YP_001534371.1;transl_table=11
NC_009952.1	RefSeq	gene	3207941	3208633	.	+	.	ID=gene3076;Name=Dshi_3038;Dbxref=GeneID:5710890;gbkey=Gene;locus_tag=Dshi_3038
NC_009952.1	RefSeq	CDS	3207941	3208633	.	+	0	ID=cds3029;Name=YP_001534372.1;Parent=gene3076;Note=PFAM: regulatory protein TetR KEGG: rpb:RPB_3412 transcriptional regulator%2C TetR family%3B TetR family;Dbxref=Genbank:YP_001534372.1,GeneID:5710890;gbkey=CDS;product=transcriptional regulator;protein_id=YP_001534372.1;transl_table=11
NC_009952.1	RefSeq	gene	3208637	3209044	.	-	.	ID=gene3077;Name=Dshi_3039;Dbxref=GeneID:5710891;gbkey=Gene;locus_tag=Dshi_3039
NC_009952.1	RefSeq	CDS	3208637	3209044	.	-	0	ID=cds3030;Name=YP_001534373.1;Parent=gene3077;Note=PFAM: BLUF domain protein KEGG: rpe:RPE_3231 BLUF domain protein. Good BLAST hit to several Rhodobacteraceae species%2C pfam04940%2C RBS 10nt upstream;Dbxref=Genbank:YP_001534373.1,GeneID:5710891;gbkey=CDS;product=BLUF domain-containing protein;protein_id=YP_001534373.1;transl_table=11
NC_009952.1	RefSeq	gene	3209163	3209972	.	-	.	ID=gene3078;Name=dapB;Dbxref=GeneID:5710892;gbkey=Gene;gene=dapB;locus_tag=Dshi_3040
NC_009952.1	RefSeq	CDS	3209163	3209972	.	-	0	ID=cds3031;Name=YP_001534374.1;Parent=gene3078;Note=catalyzes the reduction of 2%2C3-dihydrodipicolinate to 2%2C3%2C4%2C5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis;Dbxref=Genbank:YP_001534374.1,GeneID:5710892;gbkey=CDS;gene=dapB;product=dihydrodipicolinate reductase;protein_id=YP_001534374.1;transl_table=11
NC_009952.1	RefSeq	gene	3210091	3210498	.	+	.	ID=gene3079;Name=rbfA;Dbxref=GeneID:5710893;gbkey=Gene;gene=rbfA;locus_tag=Dshi_3041
NC_009952.1	RefSeq	CDS	3210091	3210498	.	+	0	ID=cds3032;Name=YP_001534375.1;Parent=gene3079;Note=associates with free 30S ribosomal subunits%3B essential for efficient processing of 16S rRNA%3B in Escherichia coli rbfA is induced by cold shock;Dbxref=Genbank:YP_001534375.1,GeneID:5710893;gbkey=CDS;gene=rbfA;product=ribosome-binding factor A;protein_id=YP_001534375.1;transl_table=11
NC_009952.1	RefSeq	gene	3210502	3211416	.	+	.	ID=gene3080;Name=truB;Dbxref=GeneID:5710894;gbkey=Gene;gene=truB;locus_tag=Dshi_3042
NC_009952.1	RefSeq	CDS	3210502	3211416	.	+	0	ID=cds3033;Name=YP_001534376.1;Parent=gene3080;Note=catalyzes isomerization of specific uridines in RNA to pseudouridine%3B responsible for residues in T loops of many tRNAs;Dbxref=Genbank:YP_001534376.1,GeneID:5710894;gbkey=CDS;gene=truB;product=tRNA pseudouridine synthase B;protein_id=YP_001534376.1;transl_table=11
NC_009952.1	RefSeq	gene	3211416	3211694	.	+	.	ID=gene3081;Name=truB;Dbxref=GeneID:5710895;gbkey=Gene;gene=truB;locus_tag=Dshi_3043
NC_009952.1	RefSeq	CDS	3211416	3211694	.	+	0	ID=cds3034;Name=YP_001534377.1;Parent=gene3081;Note=PFAM: protein of unknown function DUF1294 KEGG: ret:RHE_CH01861 putative inner membrane protein%2C predicted 3TMH;Dbxref=Genbank:YP_001534377.1,GeneID:5710895;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534377.1;transl_table=11
NC_009952.1	RefSeq	gene	3211817	3213247	.	+	.	ID=gene3082;Name=Dshi_3044;Dbxref=GeneID:5710896;gbkey=Gene;locus_tag=Dshi_3044
NC_009952.1	RefSeq	CDS	3211817	3213247	.	+	0	ID=cds3035;Name=YP_001534378.1;Parent=gene3082;Note=PFAM: Tannase and feruloyl esterase KEGG: psa:PST_1665 tannase precursor%3B BLAST hit to Rhodobacteraceae%2C RBS 5nt upstream;Dbxref=Genbank:YP_001534378.1,GeneID:5710896;gbkey=CDS;product=feruloyl esterase;protein_id=YP_001534378.1;transl_table=11
NC_009952.1	RefSeq	gene	3213310	3214326	.	+	.	ID=gene3083;Name=Dshi_3045;Dbxref=GeneID:5710897;gbkey=Gene;locus_tag=Dshi_3045
NC_009952.1	RefSeq	CDS	3213310	3214326	.	+	0	ID=cds3036;Name=YP_001534379.1;Parent=gene3083;Note=PFAM: glycosyl transferase family 2 KEGG: rde:RD1_0635 glycosyl transferase%2C putative;Dbxref=Genbank:YP_001534379.1,GeneID:5710897;gbkey=CDS;product=putative glycosyl transferase;protein_id=YP_001534379.1;transl_table=11
NC_009952.1	RefSeq	gene	3214330	3215577	.	-	.	ID=gene3084;Name=ttuD;Dbxref=GeneID:5710898;gbkey=Gene;gene=ttuD;locus_tag=Dshi_3046
NC_009952.1	RefSeq	CDS	3214330	3215577	.	-	0	ID=cds3037;Name=YP_001534380.1;Parent=gene3084;Note=PFAM: MOFRL domain protein KEGG: rso:RSp1449 probable hydroxypyruvate reductase oxidoreductase protein;Dbxref=Genbank:YP_001534380.1,GeneID:5710898;gbkey=CDS;gene=ttuD;product=hydroxypyruvate reductase;protein_id=YP_001534380.1;transl_table=11
NC_009952.1	RefSeq	gene	3215574	3216458	.	-	.	ID=gene3085;Name=glxR;Dbxref=GeneID:5710899;gbkey=Gene;gene=glxR;locus_tag=Dshi_3047
NC_009952.1	RefSeq	CDS	3215574	3216458	.	-	0	ID=cds3038;Name=YP_001534381.1;Parent=gene3085;Note=COG2084 MmsB - 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases PFAM: oxidoreductase domain protein%3B 6-phosphogluconate dehydrogenase NAD-binding KEGG: jan:Jann_3485 3-hydroxyisobutyrate dehydrogenase%3B TSAR%3B Tartronate semialdehyde reductase;Dbxref=Genbank:YP_001534381.1,GeneID:5710899;gbkey=CDS;gene=glxR;product=2-hydroxy-3-oxopropionate reductase;protein_id=YP_001534381.1;transl_table=11
NC_009952.1	RefSeq	gene	3216579	3217361	.	+	.	ID=gene3086;Name=Dshi_3048;Dbxref=GeneID:5710900;gbkey=Gene;locus_tag=Dshi_3048
NC_009952.1	RefSeq	CDS	3216579	3217361	.	+	0	ID=cds3039;Name=YP_001534382.1;Parent=gene3086;Note=PFAM: regulatory protein GntR HTH%3B GntR domain protein KEGG: bbr:BB2654 GntR-family transcriptional regulator COG2186:FadR%2C PRK10225 %3B GntR domain protein KEGG: bbr:BB2654 GntR-family transcriptional regulator;Dbxref=Genbank:YP_001534382.1,GeneID:5710900;gbkey=CDS;product=GntR family transcriptional regulator;protein_id=YP_001534382.1;transl_table=11
NC_009952.1	RefSeq	gene	3217365	3218309	.	-	.	ID=gene3087;Name=Dshi_3049;Dbxref=GeneID:5710901;gbkey=Gene;locus_tag=Dshi_3049
NC_009952.1	RefSeq	CDS	3217365	3218309	.	-	0	ID=cds3040;Name=YP_001534383.1;Parent=gene3087;Note=RBS 7nt upstream PFAM: NAD-dependent epimerase%2Fdehydratase%3B short-chain dehydrogenase%2Freductase SDR%3B 3-beta hydroxysteroid dehydrogenase%2Fisomerase%3B dTDP-4-dehydrorhamnose reductase KEGG: acr:Acry_2399 NAD-dependent epimerase%2Fdehydratase;Dbxref=Genbank:YP_001534383.1,GeneID:5710901;gbkey=CDS;product=NAD-dependent epimerase%2Fdehydratase;protein_id=YP_001534383.1;transl_table=11
NC_009952.1	RefSeq	gene	3218553	3219509	.	-	.	ID=gene3088;Name=citE2;Dbxref=GeneID:5710902;gbkey=Gene;gene=citE2;locus_tag=Dshi_3050
NC_009952.1	RefSeq	CDS	3218553	3219509	.	-	0	ID=cds3041;Name=YP_001534384.1;Parent=gene3088;Note=PFAM: HpcH%2FHpaI aldolase KEGG: rsq:Rsph17025_2481 citrate %28pro-3S%29-lyase;Dbxref=Genbank:YP_001534384.1,GeneID:5710902;gbkey=CDS;gene=citE2;product=citrate lyase subunit beta;protein_id=YP_001534384.1;transl_table=11
NC_009952.1	RefSeq	gene	3219781	3220143	.	-	.	ID=gene3089;Name=Dshi_3051;Dbxref=GeneID:5710903;gbkey=Gene;locus_tag=Dshi_3051
NC_009952.1	RefSeq	CDS	3219781	3220143	.	-	0	ID=cds3042;Name=YP_001534385.1;Parent=gene3089;Dbxref=Genbank:YP_001534385.1,GeneID:5710903;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534385.1;transl_table=11
NC_009952.1	RefSeq	gene	3220290	3220997	.	-	.	ID=gene3090;Name=Dshi_3052;Dbxref=GeneID:5710904;gbkey=Gene;locus_tag=Dshi_3052
NC_009952.1	RefSeq	CDS	3220290	3220997	.	-	0	ID=cds3043;Name=YP_001534386.1;Parent=gene3090;Note=N-terminal elongation%3F Mu phage related%3F;Dbxref=Genbank:YP_001534386.1,GeneID:5710904;gbkey=CDS;product=Mu-like prophage I protein;protein_id=YP_001534386.1;transl_table=11
NC_009952.1	RefSeq	gene	3221433	3222143	.	-	.	ID=gene3091;Name=Dshi_3053;Dbxref=GeneID:5710905;gbkey=Gene;locus_tag=Dshi_3053
NC_009952.1	RefSeq	CDS	3221433	3222143	.	-	0	ID=cds3044;Name=YP_001534387.1;Parent=gene3091;Note=rde:RD1_0339 transposase%2C putative;Dbxref=Genbank:YP_001534387.1,GeneID:5710905;gbkey=CDS;product=putative transposase;protein_id=YP_001534387.1;transl_table=11
NC_009952.1	RefSeq	gene	3222427	3223182	.	-	.	ID=gene3092;Name=Dshi_3054;Dbxref=GeneID:5710906;gbkey=Gene;locus_tag=Dshi_3054
NC_009952.1	RefSeq	CDS	3222427	3223182	.	-	0	ID=cds3045;Name=YP_001534388.1;Parent=gene3092;Note=PFAM: phospholipid%2Fglycerol acyltransferase KEGG: sit:TM1040_3500 phospholipid%2Fglycerol acyltransferas%2CCOG0204;Dbxref=Genbank:YP_001534388.1,GeneID:5710906;gbkey=CDS;product=phospholipid%2Fglycerol acyltransferase;protein_id=YP_001534388.1;transl_table=11
NC_009952.1	RefSeq	gene	3223182	3224075	.	-	.	ID=gene3093;Name=Dshi_3055;Dbxref=GeneID:5710907;gbkey=Gene;locus_tag=Dshi_3055
NC_009952.1	RefSeq	CDS	3223182	3224075	.	-	0	ID=cds3046;Name=YP_001534389.1;Parent=gene3093;Note=SY%2C PFAM: protein of unknown function DUF214 KEGG: rsh:Rsph17029_2388 protein of unknown function DUF214 %2C COG2177%2C conserved neighborhood regions %28with COG2884 and COG0204%29;Dbxref=Genbank:YP_001534389.1,GeneID:5710907;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534389.1;transl_table=11
NC_009952.1	RefSeq	gene	3224072	3224743	.	-	.	ID=gene3094;Name=ftsE;Dbxref=GeneID:5710908;gbkey=Gene;gene=ftsE;locus_tag=Dshi_3056
NC_009952.1	RefSeq	CDS	3224072	3224743	.	-	0	ID=cds3047;Name=YP_001534390.1;Parent=gene3094;Note=PFAM: ABC transporter related SMART: AAA ATPase KEGG: rde:RD1_1599 ftsE%3B cell division ATP-binding protein%2C putative;Dbxref=Genbank:YP_001534390.1,GeneID:5710908;gbkey=CDS;gene=ftsE;product=ABC transporter-like protein;protein_id=YP_001534390.1;transl_table=11
NC_009952.1	RefSeq	gene	3224908	3225654	.	+	.	ID=gene3095;Name=Dshi_3057;Dbxref=GeneID:5710909;gbkey=Gene;locus_tag=Dshi_3057
NC_009952.1	RefSeq	CDS	3224908	3225654	.	+	0	ID=cds3048;Name=YP_001534391.1;Parent=gene3095;Note=TIGRFAM: MJ0042 family finger-like protein KEGG: sil:SPO0336 hypothetical protein%2C Bad blast%2C but this protein contains a CXXCX%2819%29CXXC motif suggestive of MJ0042 family;Dbxref=Genbank:YP_001534391.1,GeneID:5710909;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534391.1;transl_table=11
NC_009952.1	RefSeq	gene	3225943	3228627	.	-	.	ID=gene3096;Name=Dshi_3058;Dbxref=GeneID:5710910;gbkey=Gene;locus_tag=Dshi_3058
NC_009952.1	RefSeq	CDS	3225943	3228627	.	-	0	ID=cds3049;Name=YP_001534392.1;Parent=gene3096;Note=TIGRFAM: conserved hypothetical protein TIGR02302 KEGG: sil:SPO0335 hypothetical protein;Dbxref=Genbank:YP_001534392.1,GeneID:5710910;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534392.1;transl_table=11
NC_009952.1	RefSeq	gene	3228631	3229926	.	-	.	ID=gene3097;Name=lysA;Dbxref=GeneID:5710911;gbkey=Gene;gene=lysA;locus_tag=Dshi_3059
NC_009952.1	RefSeq	CDS	3228631	3229926	.	-	0	ID=cds3050;Name=YP_001534393.1;Parent=gene3097;Note=TIGRFAM: diaminopimelate decarboxylase PFAM: Orn%2FDAP%2FArg decarboxylase 2 KEGG: jan:Jann_0481 diaminopimelate decarboxylase%3B DAP decarboxylase;Dbxref=Genbank:YP_001534393.1,GeneID:5710911;gbkey=CDS;gene=lysA;product=diaminopimelate decarboxylase;protein_id=YP_001534393.1;transl_table=11
NC_009952.1	RefSeq	gene	3230005	3230340	.	-	.	ID=gene3098;Name=Dshi_3060;Dbxref=GeneID:5710912;gbkey=Gene;locus_tag=Dshi_3060
NC_009952.1	RefSeq	CDS	3230005	3230340	.	-	0	ID=cds3051;Name=YP_001534394.1;Parent=gene3098;Note=KEGG: rsq:Rsph17025_2447 hypothetical protein%2C RBS;Dbxref=Genbank:YP_001534394.1,GeneID:5710912;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534394.1;transl_table=11
NC_009952.1	RefSeq	gene	3230492	3230662	.	-	.	ID=gene3099;Name=Dshi_3061;Dbxref=GeneID:5710913;gbkey=Gene;locus_tag=Dshi_3061
NC_009952.1	RefSeq	CDS	3230492	3230662	.	-	0	ID=cds3052;Name=YP_001534395.1;Parent=gene3099;Dbxref=Genbank:YP_001534395.1,GeneID:5710913;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534395.1;transl_table=11
NC_009952.1	RefSeq	gene	3230659	3232050	.	-	.	ID=gene3100;Name=argH;Dbxref=GeneID:5710914;gbkey=Gene;gene=argH;locus_tag=Dshi_3062
NC_009952.1	RefSeq	CDS	3230659	3232050	.	-	0	ID=cds3053;Name=YP_001534396.1;Parent=gene3100;Note=catalyzes the formation of arginine from %28N-L-arginino%29succinate;Dbxref=Genbank:YP_001534396.1,GeneID:5710914;gbkey=CDS;gene=argH;product=argininosuccinate lyase;protein_id=YP_001534396.1;transl_table=11
NC_009952.1	RefSeq	gene	3232085	3232660	.	+	.	ID=gene3101;Name=tlpA;Dbxref=GeneID:5710915;gbkey=Gene;gene=tlpA;locus_tag=Dshi_3063
NC_009952.1	RefSeq	CDS	3232085	3232660	.	+	0	ID=cds3054;Name=YP_001534397.1;Parent=gene3101;Note=PFAM: alkyl hydroperoxide reductase%2F Thiol specific antioxidant%2F Mal allergen%3B Redoxin domain protein Swissprot: Thiol:disulfide interchange protein tlpA %28Cytochrome c biogenesis protein tlpA%29%3B Cytochrome c biogenesis protein TlpA;Dbxref=Genbank:YP_001534397.1,GeneID:5710915;gbkey=CDS;gene=tlpA;product=Thiol:disulfide interchange protein TlpA;protein_id=YP_001534397.1;transl_table=11
NC_009952.1	RefSeq	gene	3232657	3233226	.	-	.	ID=gene3102;Name=tag;Dbxref=GeneID:5710916;gbkey=Gene;gene=tag;locus_tag=Dshi_3064
NC_009952.1	RefSeq	CDS	3232657	3233226	.	-	0	ID=cds3055;Name=YP_001534398.1;Parent=gene3102;Note=KEGG: rsq:Rsph17025_2464 DNA-3-methyladenine glycosylase I TIGRFAM: DNA-3-methyladenine glycosylase I PFAM: methyladenine glycosylase;Dbxref=Genbank:YP_001534398.1,GeneID:5710916;gbkey=CDS;gene=tag;product=DNA-3-methyladenine glycosylase 1;protein_id=YP_001534398.1;transl_table=11
NC_009952.1	RefSeq	gene	3233338	3234183	.	+	.	ID=gene3103;Name=Dshi_3065;Dbxref=GeneID:5710917;gbkey=Gene;locus_tag=Dshi_3065
NC_009952.1	RefSeq	CDS	3233338	3234183	.	+	0	ID=cds3056;Name=YP_001534399.1;Parent=gene3103;Note=PFAM: EAL domain protein KEGG: pde:Pden_2025 diguanylate phosphodiesterase %2C DUF2;Dbxref=Genbank:YP_001534399.1,GeneID:5710917;gbkey=CDS;product=EAL domain-containing protein;protein_id=YP_001534399.1;transl_table=11
NC_009952.1	RefSeq	gene	3234503	3235678	.	+	.	ID=gene3104;Name=atoB;Dbxref=GeneID:5710918;gbkey=Gene;gene=atoB;locus_tag=Dshi_3066
NC_009952.1	RefSeq	CDS	3234503	3235678	.	+	0	ID=cds3057;Name=YP_001534400.1;Parent=gene3104;Note=Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase%2C catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation%3B in Rhizobia and Ralstonia is involved in PHB biosynthesis;Dbxref=Genbank:YP_001534400.1,GeneID:5710918;gbkey=CDS;gene=atoB;product=acetyl-CoA acetyltransferase;protein_id=YP_001534400.1;transl_table=11
NC_009952.1	RefSeq	gene	3235779	3236501	.	+	.	ID=gene3105;Name=fabG1;Dbxref=GeneID:5710919;gbkey=Gene;gene=fabG1;locus_tag=Dshi_3067
NC_009952.1	RefSeq	CDS	3235779	3236501	.	+	0	ID=cds3058;Name=YP_001534401.1;Parent=gene3105;Note=TIGRFAM: acetoacetyl-CoA reductase PFAM: NAD-dependent epimerase%2Fdehydratase%3B short-chain dehydrogenase%2Freductase SDR%3B KR domain protein KEGG: jan:Jann_0492 acetoacetyl-CoA reductase%3B 3-ketoacyl-acyl carrier protein reductase%3B 3-oxoacyl-%5Bacyl-carrier-protein%5D reductase;Dbxref=Genbank:YP_001534401.1,GeneID:5710919;gbkey=CDS;gene=fabG1;product=acetoacetyl-CoA reductase;protein_id=YP_001534401.1;transl_table=11
NC_009952.1	RefSeq	gene	3236804	3237751	.	+	.	ID=gene3106;Name=Dshi_3068;Dbxref=GeneID:5710920;gbkey=Gene;locus_tag=Dshi_3068
NC_009952.1	RefSeq	CDS	3236804	3237751	.	+	0	ID=cds3059;Name=YP_001534402.1;Parent=gene3106;Note=Glycine cleavage system transcriptional activator%3B activates the gcvTHP operon in the presence of glycine and represses the operon in its absence;Dbxref=Genbank:YP_001534402.1,GeneID:5710920;gbkey=CDS;product=DNA-binding transcriptional activator GcvA;protein_id=YP_001534402.1;transl_table=11
NC_009952.1	RefSeq	gene	3237811	3237978	.	-	.	ID=gene3107;Name=Dshi_3069;Dbxref=GeneID:5710921;gbkey=Gene;locus_tag=Dshi_3069
NC_009952.1	RefSeq	CDS	3237811	3237978	.	-	0	ID=cds3060;Name=YP_001534403.1;Parent=gene3107;Note=PFAM: protein of unknown function DUF465 KEGG: pde:Pden_2028 protein of unknown function DUF465%2C COG5570;Dbxref=Genbank:YP_001534403.1,GeneID:5710921;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534403.1;transl_table=11
NC_009952.1	RefSeq	gene	3238074	3238844	.	-	.	ID=gene3108;Name=Dshi_3070;Dbxref=GeneID:5710922;gbkey=Gene;locus_tag=Dshi_3070
NC_009952.1	RefSeq	CDS	3238074	3238844	.	-	0	ID=cds3061;Name=YP_001534404.1;Parent=gene3108;Note=KEGG: rsp:RSP_0748 N-6 adenine-specific DNA methylase %3Bpfam05175 MTS Methyltransferase small domain%3B COG4123 Predicted O-methyltransferase;Dbxref=Genbank:YP_001534404.1,GeneID:5710922;gbkey=CDS;product=type 11 methyltransferase;protein_id=YP_001534404.1;transl_table=11
NC_009952.1	RefSeq	gene	3238844	3239071	.	-	.	ID=gene3109;Name=Dshi_3071;Dbxref=GeneID:5710923;gbkey=Gene;locus_tag=Dshi_3071
NC_009952.1	RefSeq	CDS	3238844	3239071	.	-	0	ID=cds3062;Name=YP_001534405.1;Parent=gene3109;Note=pfam09413 Protein of unknown function %28DUF2007%29 KEGG: rde:RD1_3400 hypothetical protein;Dbxref=Genbank:YP_001534405.1,GeneID:5710923;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534405.1;transl_table=11
NC_009952.1	RefSeq	gene	3239127	3240131	.	+	.	ID=gene3110;Name=ispB;Dbxref=GeneID:5710924;gbkey=Gene;gene=ispB;locus_tag=Dshi_3072
NC_009952.1	RefSeq	CDS	3239127	3240131	.	+	0	ID=cds3063;Name=YP_001534406.1;Parent=gene3110;Note=PFAM: Polyprenyl synthetase KEGG: rsh:Rsph17029_2406 trans-hexaprenyltranstransferase;Dbxref=Genbank:YP_001534406.1,GeneID:5710924;gbkey=CDS;gene=ispB;product=octaprenyl-diphosphate synthase;protein_id=YP_001534406.1;transl_table=11
NC_009952.1	RefSeq	gene	3240124	3240987	.	-	.	ID=gene3111;Name=ispE;Dbxref=GeneID:5710925;gbkey=Gene;gene=ispE;locus_tag=Dshi_3073
NC_009952.1	RefSeq	CDS	3240124	3240987	.	-	0	ID=cds3064;Name=YP_001534407.1;Parent=gene3111;Note=An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis;Dbxref=Genbank:YP_001534407.1,GeneID:5710925;gbkey=CDS;gene=ispE;product=4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;protein_id=YP_001534407.1;transl_table=11
NC_009952.1	RefSeq	gene	3240971	3242725	.	-	.	ID=gene3112;Name=ispE;Dbxref=GeneID:5710926;gbkey=Gene;gene=ispE;locus_tag=Dshi_3074
NC_009952.1	RefSeq	CDS	3240971	3242725	.	-	0	ID=cds3065;Name=YP_001534408.1;Parent=gene3112;Note=PFAM: TPR repeat-containing protein%3B Tetratricopeptide TPR_4%3B Tetratricopeptide TPR_2 repeat protein SMART: Tetratricopeptide domain protein KEGG: sil:SPO0317 TPR domain protein. Annotation was derived from R. denitrificans;Dbxref=Genbank:YP_001534408.1,GeneID:5710926;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534408.1;transl_table=11
NC_009952.1	RefSeq	gene	3242821	3244470	.	-	.	ID=gene3113;Name=ydiS;Dbxref=GeneID:5710927;gbkey=Gene;gene=ydiS;locus_tag=Dshi_3075
NC_009952.1	RefSeq	CDS	3242821	3244470	.	-	0	ID=cds3066;Name=YP_001534409.1;Parent=gene3113;Note=pfam05187 FAD dependent oxidoreductase%3B electron transfer flavoprotein-ubiquinone oxidoreductase KEGG: rde:RD1_3404 electron transfer flavoprotein-ubiquinone oxidoreductase%2C putative COG0644%3B Electron-transferring-flavoprotein dehydrogenase%3B ETF dehydrogenase%3B ETF-ubiquinone oxidoreductase%3B ETF-QO;Dbxref=Genbank:YP_001534409.1,GeneID:5710927;gbkey=CDS;gene=ydiS;product=electron transfer flavoprotein-ubiquinone oxidoreductase;protein_id=YP_001534409.1;transl_table=11
NC_009952.1	RefSeq	gene	3244630	3245145	.	+	.	ID=gene3114;Name=greA;Dbxref=GeneID:5710928;gbkey=Gene;gene=greA;locus_tag=Dshi_3076
NC_009952.1	RefSeq	CDS	3244630	3245145	.	+	0	ID=cds3067;Name=YP_001534410.1;Parent=gene3114;Note=necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites%3B arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through%2C resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3%27terminus;Dbxref=Genbank:YP_001534410.1,GeneID:5710928;gbkey=CDS;gene=greA;product=transcription elongation factor GreA;protein_id=YP_001534410.1;transl_table=11
NC_009952.1	RefSeq	gene	3245223	3246209	.	+	.	ID=gene3115;Name=Dshi_3077;Dbxref=GeneID:5710929;gbkey=Gene;locus_tag=Dshi_3077
NC_009952.1	RefSeq	CDS	3245223	3246209	.	+	0	ID=cds3068;Name=YP_001534411.1;Parent=gene3115;Note=KEGG: sil:SPO0311 hypothetical protein;Dbxref=Genbank:YP_001534411.1,GeneID:5710929;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534411.1;transl_table=11
NC_009952.1	RefSeq	gene	3246273	3246977	.	+	.	ID=gene3116;Name=Dshi_3078;Dbxref=GeneID:5710930;gbkey=Gene;locus_tag=Dshi_3078
NC_009952.1	RefSeq	CDS	3246273	3246977	.	+	0	ID=cds3069;Name=YP_001534412.1;Parent=gene3116;Note=PFAM: AzlC family protein KEGG: rsq:Rsph17025_2457 AzlC family protein;Dbxref=Genbank:YP_001534412.1,GeneID:5710930;gbkey=CDS;product=AzlC family protein;protein_id=YP_001534412.1;transl_table=11
NC_009952.1	RefSeq	gene	3246974	3247306	.	+	.	ID=gene3117;Name=Dshi_3079;Dbxref=GeneID:5710931;gbkey=Gene;locus_tag=Dshi_3079
NC_009952.1	RefSeq	CDS	3246974	3247306	.	+	0	ID=cds3070;Name=YP_001534413.1;Parent=gene3117;Note=PFAM: branched-chain amino acid transport pfam05437AzlDKEGG: rde:RD1_3412 hypothetical protein %3B Neighborhood with AzlC family protein %3B predicted TMH;Dbxref=Genbank:YP_001534413.1,GeneID:5710931;gbkey=CDS;product=AzlD branched-chain amino acid transport;protein_id=YP_001534413.1;transl_table=11
NC_009952.1	RefSeq	gene	3247400	3248863	.	+	.	ID=gene3118;Name=Dshi_3080;Dbxref=GeneID:5710932;gbkey=Gene;locus_tag=Dshi_3080
NC_009952.1	RefSeq	CDS	3247400	3248863	.	+	0	ID=cds3071;Name=YP_001534414.1;Parent=gene3118;Note=colocated with RND subunit%3B TIGRFAM: efflux transporter%2C RND family%2C MFP subunit PFAM: secretion protein HlyD family protein KEGG: jan:Jann_1310 secretion protein HlyD%3B RND family%2C MFP subunit;Dbxref=Genbank:YP_001534414.1,GeneID:5710932;gbkey=CDS;product=efflux transporter;protein_id=YP_001534414.1;transl_table=11
NC_009952.1	RefSeq	gene	3248865	3252272	.	+	.	ID=gene3119;Name=Dshi_3081;Dbxref=GeneID:5710933;gbkey=Gene;locus_tag=Dshi_3081
NC_009952.1	RefSeq	CDS	3248865	3252272	.	+	0	ID=cds3072;Name=YP_001534415.1;Parent=gene3119;Note=colocated with MFP subunit%3B pfam00873%2C%3B RND family%2C RND subunit;Dbxref=Genbank:YP_001534415.1,GeneID:5710933;gbkey=CDS;product=efflux transporter;protein_id=YP_001534415.1;transl_table=11
NC_009952.1	RefSeq	gene	3252382	3253191	.	-	.	ID=gene3120;Name=Dshi_3082;Dbxref=GeneID:5710934;gbkey=Gene;locus_tag=Dshi_3082
NC_009952.1	RefSeq	CDS	3252382	3253191	.	-	0	ID=cds3073;Name=YP_001534416.1;Parent=gene3120;Note=KEGG: rsh:Rsph17029_2660 hypothetical protein %2CCOG4233;Dbxref=Genbank:YP_001534416.1,GeneID:5710934;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534416.1;transl_table=11
NC_009952.1	RefSeq	gene	3253311	3253889	.	+	.	ID=gene3121;Name=Dshi_3083;Dbxref=GeneID:5710935;gbkey=Gene;locus_tag=Dshi_3083
NC_009952.1	RefSeq	CDS	3253311	3253889	.	+	0	ID=cds3074;Name=YP_001534417.1;Parent=gene3121;Note=pfam02622%2CDUF179%2CCOG1678 Putative transcriptional regulator%3B KEGG: rde:RD1_3419 hypothetical protein;Dbxref=Genbank:YP_001534417.1,GeneID:5710935;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534417.1;transl_table=11
NC_009952.1	RefSeq	gene	3253947	3254924	.	-	.	ID=gene3122;Name=Dshi_3084;Dbxref=GeneID:5710936;gbkey=Gene;locus_tag=Dshi_3084
NC_009952.1	RefSeq	CDS	3253947	3254924	.	-	0	ID=cds3075;Name=YP_001534418.1;Parent=gene3122;Note=TIGRFAM: Sua5%2FYciO%2FYrdC%2FYwlC family protein PFAM: SUA5 domain protein%3B SUA5%2FyciO%2FyrdC domain KEGG: pde:Pden_0435 SUA5%2FYciO%2FYrdC%2FYwlC family protein;Dbxref=Genbank:YP_001534418.1,GeneID:5710936;gbkey=CDS;product=Sua5%2FYciO%2FYrdC%2FYwlC family protein;protein_id=YP_001534418.1;transl_table=11
NC_009952.1	RefSeq	gene	3255050	3256765	.	+	.	ID=gene3123;Name=Dshi_3085;Dbxref=GeneID:5710937;gbkey=Gene;locus_tag=Dshi_3085
NC_009952.1	RefSeq	CDS	3255050	3256765	.	+	0	ID=cds3076;Name=YP_001534419.1;Parent=gene3123;Note=PFAM: acyl-CoA dehydrogenase domain protein%3B Acyl-CoA dehydrogenase type 2 domain KEGG: sil:SPO0298 acyl-CoA dehydrogenase family protein%3B rde:RD1_3417 putative acyl-CoA;Dbxref=Genbank:YP_001534419.1,GeneID:5710937;gbkey=CDS;product=putative acyl-CoA dehydrogenase family protein;protein_id=YP_001534419.1;transl_table=11
NC_009952.1	RefSeq	gene	3256765	3257814	.	+	.	ID=gene3124;Name=Dshi_3086;Dbxref=GeneID:5710938;gbkey=Gene;locus_tag=Dshi_3086
NC_009952.1	RefSeq	CDS	3256765	3257814	.	+	0	ID=cds3077;Name=YP_001534420.1;Parent=gene3124;Note=PFAM: beta-lactamase domain protein KEGG: rsh:Rsph17029_2397 beta-lactamase domain protein;Dbxref=Genbank:YP_001534420.1,GeneID:5710938;gbkey=CDS;product=metallo-beta-lactamase family protein;protein_id=YP_001534420.1;transl_table=11
NC_009952.1	RefSeq	gene	3257905	3258042	.	+	.	ID=gene3125;Name=Dshi_3087;Dbxref=GeneID:5710939;gbkey=Gene;locus_tag=Dshi_3087
NC_009952.1	RefSeq	CDS	3257905	3258042	.	+	0	ID=cds3078;Name=YP_001534421.1;Parent=gene3125;Note=45aa protein PFAM: aa3 type cytochrome c oxidase subunit IV;Dbxref=Genbank:YP_001534421.1,GeneID:5710939;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534421.1;transl_table=11
NC_009952.1	RefSeq	gene	3258055	3258663	.	+	.	ID=gene3126;Name=Dshi_3088;Dbxref=GeneID:5710940;gbkey=Gene;locus_tag=Dshi_3088
NC_009952.1	RefSeq	CDS	3258055	3258663	.	+	0	ID=cds3079;Name=YP_001534422.1;Parent=gene3126;Note=KEGG: rsh:Rsph17029_2395 hypothetical protein;Dbxref=Genbank:YP_001534422.1,GeneID:5710940;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534422.1;transl_table=11
NC_009952.1	RefSeq	gene	3258688	3259230	.	-	.	ID=gene3127;Name=moaB;Dbxref=GeneID:5710941;gbkey=Gene;gene=moaB;locus_tag=Dshi_3089
NC_009952.1	RefSeq	CDS	3258688	3259230	.	-	0	ID=cds3080;Name=YP_001534423.1;Parent=gene3127;Note=TIGRFAM: molybdenum cofactor synthesis domain%3B molybdenum cofactor biosynthesis protein B PFAM: molybdopterin binding domain KEGG: sil:SPO0291 molybdenum cofactor biosynthesis protein B;Dbxref=Genbank:YP_001534423.1,GeneID:5710941;gbkey=CDS;gene=moaB;product=molybdenum cofactor biosynthesis protein B;protein_id=YP_001534423.1;transl_table=11
NC_009952.1	RefSeq	gene	3259227	3260024	.	-	.	ID=gene3128;Name=udgA;Dbxref=GeneID:5710942;gbkey=Gene;gene=udgA;locus_tag=Dshi_3090
NC_009952.1	RefSeq	CDS	3259227	3260024	.	-	0	ID=cds3081;Name=YP_001534424.1;Parent=gene3128;Note=TIGRFAM: phage SPO1 DNA polymerase-related protein PFAM: Uracil-DNA glycosylase superfamily KEGG: sil:SPO0288 uracil-DNA glycosylase%3B rde:RD1_3425 udgA%3B uracil-DNA glycosylase%2C C-terminal;Dbxref=Genbank:YP_001534424.1,GeneID:5710942;gbkey=CDS;gene=udgA;product=uracil-DNA glycosylase;protein_id=YP_001534424.1;transl_table=11
NC_009952.1	RefSeq	gene	3260134	3261084	.	+	.	ID=gene3129;Name=pyrB;Dbxref=GeneID:5710943;gbkey=Gene;gene=pyrB;locus_tag=Dshi_3091
NC_009952.1	RefSeq	CDS	3260134	3261084	.	+	0	ID=cds3082;Name=YP_001534425.1;Parent=gene3129;Note=catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis;Dbxref=Genbank:YP_001534425.1,GeneID:5710943;gbkey=CDS;gene=pyrB;product=aspartate carbamoyltransferase catalytic subunit;protein_id=YP_001534425.1;transl_table=11
NC_009952.1	RefSeq	gene	3261081	3261506	.	+	.	ID=gene3130;Name=pyrB;Dbxref=GeneID:5710944;gbkey=Gene;gene=pyrB;locus_tag=Dshi_3092
NC_009952.1	RefSeq	CDS	3261081	3261506	.	+	0	ID=cds3083;Name=YP_001534426.1;Parent=gene3130;Dbxref=Genbank:YP_001534426.1,GeneID:5710944;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534426.1;transl_table=11
NC_009952.1	RefSeq	gene	3261503	3262081	.	+	.	ID=gene3131;Name=Dshi_3093;Dbxref=GeneID:5710945;gbkey=Gene;locus_tag=Dshi_3093
NC_009952.1	RefSeq	CDS	3261503	3262081	.	+	0	ID=cds3084;Name=YP_001534427.1;Parent=gene3131;Dbxref=Genbank:YP_001534427.1,GeneID:5710945;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534427.1;transl_table=11
NC_009952.1	RefSeq	gene	3262081	3263379	.	+	.	ID=gene3132;Name=pyrC1;Dbxref=GeneID:5710946;gbkey=Gene;gene=pyrC1;locus_tag=Dshi_3094
NC_009952.1	RefSeq	CDS	3262081	3263379	.	+	0	ID=cds3085;Name=YP_001534428.1;Parent=gene3132;Note=KEGG: rsh:Rsph17029_2663 dihydroorotase%2C multifunctional complex type TIGRFAM: dihydroorotase%2C multifunctional complex type PFAM: amidohydrolase%3B DHOase;Dbxref=Genbank:YP_001534428.1,GeneID:5710946;gbkey=CDS;gene=pyrC1;product=dihydroorotase;protein_id=YP_001534428.1;transl_table=11
NC_009952.1	RefSeq	gene	3263379	3263990	.	+	.	ID=gene3133;Name=pyrC1;Dbxref=GeneID:5710947;gbkey=Gene;gene=pyrC1;locus_tag=Dshi_3095
NC_009952.1	RefSeq	CDS	3263379	3263990	.	+	0	ID=cds3086;Name=YP_001534429.1;Parent=gene3133;Note=PFAM: protein of unknown function DUF205 KEGG: jan:Jann_3906 protein of unknown function DUF205 %2C COG0344%2C COG0344;Dbxref=Genbank:YP_001534429.1,GeneID:5710947;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534429.1;transl_table=11
NC_009952.1	RefSeq	gene	3263993	3264499	.	+	.	ID=gene3134;Name=Dshi_3096;Dbxref=GeneID:5710948;gbkey=Gene;locus_tag=Dshi_3096
NC_009952.1	RefSeq	CDS	3263993	3264499	.	+	0	ID=cds3087;Name=YP_001534430.1;Parent=gene3134;Note=PFAM: protein of unknown function DUF805 KEGG: jan:Jann_3908 protein of unknown function DUF805%2CCOG3152 - Predicted membrane protein;Dbxref=Genbank:YP_001534430.1,GeneID:5710948;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534430.1;transl_table=11
NC_009952.1	RefSeq	gene	3264516	3265886	.	-	.	ID=gene3135;Name=gsh;Dbxref=GeneID:5710949;gbkey=Gene;gene=gsh;locus_tag=Dshi_3097
NC_009952.1	RefSeq	CDS	3264516	3265886	.	-	0	ID=cds3088;Name=YP_001534431.1;Parent=gene3135;Note=KEGG: sil:SPO3626 glutamate-cysteine ligase TIGRFAM: glutamate--cysteine ligase PFAM: glutamate--cysteine ligase GCS2;Dbxref=Genbank:YP_001534431.1,GeneID:5710949;gbkey=CDS;gene=gsh;product=glutamate--cysteine ligase;protein_id=YP_001534431.1;transl_table=11
NC_009952.1	RefSeq	gene	3265922	3266470	.	-	.	ID=gene3136;Name=Dshi_3098;Dbxref=GeneID:5710950;gbkey=Gene;locus_tag=Dshi_3098
NC_009952.1	RefSeq	CDS	3265922	3266470	.	-	0	ID=cds3089;Name=YP_001534432.1;Parent=gene3136;Dbxref=Genbank:YP_001534432.1,GeneID:5710950;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534432.1;transl_table=11
NC_009952.1	RefSeq	gene	3266467	3267216	.	-	.	ID=gene3137;Name=Dshi_3099;Dbxref=GeneID:5710951;gbkey=Gene;locus_tag=Dshi_3099
NC_009952.1	RefSeq	CDS	3266467	3267216	.	-	0	ID=cds3090;Name=YP_001534433.1;Parent=gene3137;Note=in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA%3B cells lacking this function can grow%2C but are outcompeted by wild-type%3B SAM-dependent m%283%29U1498 methyltransferase;Dbxref=Genbank:YP_001534433.1,GeneID:5710951;gbkey=CDS;product=16S ribosomal RNA methyltransferase RsmE;protein_id=YP_001534433.1;transl_table=11
NC_009952.1	RefSeq	gene	3267233	3268201	.	+	.	ID=gene3138;Name=ubiA;Dbxref=GeneID:5710952;gbkey=Gene;gene=ubiA;locus_tag=Dshi_3100
NC_009952.1	RefSeq	CDS	3267233	3268201	.	+	0	ID=cds3091;Name=YP_001534434.1;Parent=gene3138;Note=UbiA prenyltransferase family catalyzes the transfer of a prenyl group to various acceptors with hydrophobic ring structures in the biosynthesis of respiratory quinones%2C hemes%2C chlorophylls%2C vitamin E%2C and shikonin;Dbxref=Genbank:YP_001534434.1,GeneID:5710952;gbkey=CDS;gene=ubiA;product=4-hydroxybenzoate polyprenyltransferase;protein_id=YP_001534434.1;transl_table=11
NC_009952.1	RefSeq	gene	3268262	3270115	.	+	.	ID=gene3139;Name=Dshi_3101;Dbxref=GeneID:5710953;gbkey=Gene;locus_tag=Dshi_3101
NC_009952.1	RefSeq	CDS	3268262	3270115	.	+	0	ID=cds3092;Name=YP_001534435.1;Parent=gene3139;Note=PFAM: OmpA%2FMotB domain protein KEGG: sit:TM1040_3081 OmpA%2FMotB. Annotation was derived from R. denitrificans;Dbxref=Genbank:YP_001534435.1,GeneID:5710953;gbkey=CDS;product=OmpA domain-containing protein;protein_id=YP_001534435.1;transl_table=11
NC_009952.1	RefSeq	gene	3270112	3270444	.	+	.	ID=gene3140;Name=Dshi_3102;Dbxref=GeneID:5710954;gbkey=Gene;locus_tag=Dshi_3102
NC_009952.1	RefSeq	CDS	3270112	3270444	.	+	0	ID=cds3093;Name=YP_001534436.1;Parent=gene3140;Note=KEGG: rsh:Rsph17029_2670 hypothetical protein;Dbxref=Genbank:YP_001534436.1,GeneID:5710954;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534436.1;transl_table=11
NC_009952.1	RefSeq	gene	3270452	3270895	.	-	.	ID=gene3141;Name=moaE;Dbxref=GeneID:5710955;gbkey=Gene;gene=moaE;locus_tag=Dshi_3103
NC_009952.1	RefSeq	CDS	3270452	3270895	.	-	0	ID=cds3094;Name=YP_001534437.1;Parent=gene3141;Note=PFAM: molybdopterin biosynthesis MoaE protein KEGG: sil:SPO3633 molybdopterin converting factor%2C subunit 2%3B Molybdopterin-converting factor large subunit%3B Molybdenum cofactor biosynthesis protein E%3B Molybdopterin synthase subunit 2%3B MPT synthase subunit 2;Dbxref=Genbank:YP_001534437.1,GeneID:5710955;gbkey=CDS;gene=moaE;product=molybdopterin-converting factor subunit 2;protein_id=YP_001534437.1;transl_table=11
NC_009952.1	RefSeq	gene	3270897	3271148	.	-	.	ID=gene3142;Name=moaD;Dbxref=GeneID:5710956;gbkey=Gene;gene=moaD;locus_tag=Dshi_3104
NC_009952.1	RefSeq	CDS	3270897	3271148	.	-	0	ID=cds3095;Name=YP_001534438.1;Parent=gene3142;Note=TIGRFAM: molybdopterin converting factor%2C subunit 1 PFAM: thiamineS protein KEGG: rsp:RSP_1072 putative molybdopterin MPT converting factor%2C subunit 1 protein%3B Neigbhorhood%3B Molybdopterin-converting factor small subunit%3B Molybdenum cofactor biosynthesis protein D%3B Molybdopterin synthase subunit 1%3B MPT synthase subunit 1;Dbxref=Genbank:YP_001534438.1,GeneID:5710956;gbkey=CDS;gene=moaD;product=molybdopterin-converting factor subunit 1;protein_id=YP_001534438.1;transl_table=11
NC_009952.1	RefSeq	gene	3271145	3271810	.	-	.	ID=gene3143;Name=pgsA;Dbxref=GeneID:5710957;gbkey=Gene;gene=pgsA;locus_tag=Dshi_3105
NC_009952.1	RefSeq	CDS	3271145	3271810	.	-	0	ID=cds3096;Name=YP_001534439.1;Parent=gene3143;Note=TIGRFAM: CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase PFAM: CDP-alcohol phosphatidyltransferase KEGG: rsh:Rsph17029_2734 CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase%3B PGP synthase%3B Phosphatidylglycerophosphate synthase;Dbxref=Genbank:YP_001534439.1,GeneID:5710957;gbkey=CDS;gene=pgsA;product=CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase;protein_id=YP_001534439.1;transl_table=11
NC_009952.1	RefSeq	gene	3272254	3272913	.	-	.	ID=gene3144;Name=rluA;Dbxref=GeneID:5710958;gbkey=Gene;gene=rluA;locus_tag=Dshi_3106
NC_009952.1	RefSeq	CDS	3272254	3272913	.	-	0	ID=cds3097;Name=YP_001534440.1;Parent=gene3144;Note=pfam00849 PseudoU_synth_2%2C COG0564 -Pseudouridylate synthases%2C 23S RNA-specific%2C TIGR00005 pseudouridine synthase%2C RluA family%2C good blast hit to swissprot.%3B rRNA pseudouridylate synthase A%3B rRNA-uridine isomerase A;Dbxref=Genbank:YP_001534440.1,GeneID:5710958;gbkey=CDS;gene=rluA;product=ribosomal large subunit pseudouridine synthase A;protein_id=YP_001534440.1;transl_table=11
NC_009952.1	RefSeq	gene	3273004	3273621	.	+	.	ID=gene3145;Name=rhtB;Dbxref=GeneID:5710959;gbkey=Gene;gene=rhtB;locus_tag=Dshi_3107
NC_009952.1	RefSeq	CDS	3273004	3273621	.	+	0	ID=cds3098;Name=YP_001534441.1;Parent=gene3145;Note=PFAM: Lysine exporter protein %28LYSE%2FYGGA%29 KEGG: sit:TM1040_0069 lysine exporter protein %28LysE%2FYggA%29%2C good blast hit to R. denitrificans;Dbxref=Genbank:YP_001534441.1,GeneID:5710959;gbkey=CDS;gene=rhtB;product=homoserine%2Fhomoserine lactone efflux protein;protein_id=YP_001534441.1;transl_table=11
NC_009952.1	RefSeq	gene	3273755	3274522	.	+	.	ID=gene3146;Name=Dshi_3108;Dbxref=GeneID:5710960;gbkey=Gene;locus_tag=Dshi_3108
NC_009952.1	RefSeq	CDS	3273755	3274522	.	+	0	ID=cds3099;Name=YP_001534442.1;Parent=gene3146;Note=PFAM: DSBA oxidoreductase KEGG: rde:RD1_0191 protein-disulfide isomerase%2C putative;Dbxref=Genbank:YP_001534442.1,GeneID:5710960;gbkey=CDS;product=putative protein-disulfide isomerase;protein_id=YP_001534442.1;transl_table=11
NC_009952.1	RefSeq	gene	3274527	3276476	.	-	.	ID=gene3147;Name=Dshi_3109;Dbxref=GeneID:5710961;gbkey=Gene;locus_tag=Dshi_3109
NC_009952.1	RefSeq	CDS	3274527	3276476	.	-	0	ID=cds3100;Name=YP_001534443.1;Parent=gene3147;Note=KEGG: rde:RD1_0522 hypothetical protein;Dbxref=Genbank:YP_001534443.1,GeneID:5710961;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534443.1;transl_table=11
NC_009952.1	RefSeq	gene	3276494	3277162	.	-	.	ID=gene3148;Name=Dshi_3110;Dbxref=GeneID:5710962;gbkey=Gene;locus_tag=Dshi_3110
NC_009952.1	RefSeq	CDS	3276494	3277162	.	-	0	ID=cds3101;Name=YP_001534444.1;Parent=gene3148;Note=PFAM: cyclic nucleotide-binding KEGG: rsq:Rsph17025_3179 hypothetical protein;Dbxref=Genbank:YP_001534444.1,GeneID:5710962;gbkey=CDS;product=cyclic nucleotide-binding protein;protein_id=YP_001534444.1;transl_table=11
NC_009952.1	RefSeq	gene	3277491	3279092	.	+	.	ID=gene3149;Name=aslA;Dbxref=GeneID:5710963;gbkey=Gene;gene=aslA;locus_tag=Dshi_3111
NC_009952.1	RefSeq	CDS	3277491	3279092	.	+	0	ID=cds3102;Name=YP_001534445.1;Parent=gene3149;Note=PFAM: sulfatase KEGG: rde:RD1_0531 arylsulfatase%3B Aryl-sulfate sulphohydrolase%3B AS;Dbxref=Genbank:YP_001534445.1,GeneID:5710963;gbkey=CDS;gene=aslA;product=arylsulfatase;protein_id=YP_001534445.1;transl_table=11
NC_009952.1	RefSeq	gene	3279170	3280126	.	+	.	ID=gene3150;Name=Dshi_3112;Dbxref=GeneID:5710964;gbkey=Gene;locus_tag=Dshi_3112
NC_009952.1	RefSeq	CDS	3279170	3280126	.	+	0	ID=cds3103;Name=YP_001534446.1;Parent=gene3150;Note=KEGG: rde:RD1_0530 nonspecific acid phosphatase;Dbxref=Genbank:YP_001534446.1,GeneID:5710964;gbkey=CDS;product=nonspecific acid phosphatase;protein_id=YP_001534446.1;transl_table=11
NC_009952.1	RefSeq	gene	3280195	3281160	.	+	.	ID=gene3151;Name=Dshi_3113;Dbxref=GeneID:5710965;gbkey=Gene;locus_tag=Dshi_3113
NC_009952.1	RefSeq	CDS	3280195	3281160	.	+	0	ID=cds3104;Name=YP_001534447.1;Parent=gene3151;Note=PFAM: ATPase associated with various cellular activities AAA_3%3B ATPase associated with various cellular activities AAA_5 KEGG: rde:RD1_0529 MoxR-like ATPase%2C putative;Dbxref=Genbank:YP_001534447.1,GeneID:5710965;gbkey=CDS;product=putative MoxR-like ATPase;protein_id=YP_001534447.1;transl_table=11
NC_009952.1	RefSeq	gene	3281172	3282107	.	+	.	ID=gene3152;Name=Dshi_3114;Dbxref=GeneID:5710966;gbkey=Gene;locus_tag=Dshi_3114
NC_009952.1	RefSeq	CDS	3281172	3282107	.	+	0	ID=cds3105;Name=YP_001534448.1;Parent=gene3152;Note=PFAM: protein of unknown function DUF58 KEGG: rde:RD1_0528 hypothetical protein%2C COG1721;Dbxref=Genbank:YP_001534448.1,GeneID:5710966;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534448.1;transl_table=11
NC_009952.1	RefSeq	gene	3282104	3282577	.	+	.	ID=gene3153;Name=Dshi_3115;Dbxref=GeneID:5710967;gbkey=Gene;locus_tag=Dshi_3115
NC_009952.1	RefSeq	CDS	3282104	3282577	.	+	0	ID=cds3106;Name=YP_001534449.1;Parent=gene3153;Note=KEGG: rde:RD1_0527 hypothetical protein;Dbxref=Genbank:YP_001534449.1,GeneID:5710967;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534449.1;transl_table=11
NC_009952.1	RefSeq	gene	3282574	3283560	.	+	.	ID=gene3154;Name=Dshi_3116;Dbxref=GeneID:5710968;gbkey=Gene;locus_tag=Dshi_3116
NC_009952.1	RefSeq	CDS	3282574	3283560	.	+	0	ID=cds3107;Name=YP_001534450.1;Parent=gene3154;Note=PFAM:VWA von Willebrand factor type A domain KEGG: rde:RD1_0526 hypothetical protein%2CTMH;Dbxref=Genbank:YP_001534450.1,GeneID:5710968;gbkey=CDS;product=von Willebrand factor type A domain-containing protein;protein_id=YP_001534450.1;transl_table=11
NC_009952.1	RefSeq	gene	3283557	3285068	.	+	.	ID=gene3155;Name=Dshi_3117;Dbxref=GeneID:5710969;gbkey=Gene;locus_tag=Dshi_3117
NC_009952.1	RefSeq	CDS	3283557	3285068	.	+	0	ID=cds3108;Name=YP_001534451.1;Parent=gene3155;Note=KEGG: rde:RD1_0525 hypothetical protein;Dbxref=Genbank:YP_001534451.1,GeneID:5710969;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534451.1;transl_table=11
NC_009952.1	RefSeq	gene	3285065	3286309	.	+	.	ID=gene3156;Name=Dshi_3118;Dbxref=GeneID:5710970;gbkey=Gene;locus_tag=Dshi_3118
NC_009952.1	RefSeq	CDS	3285065	3286309	.	+	0	ID=cds3109;Name=YP_001534452.1;Parent=gene3156;Note=KEGG: rde:RD1_0524 hypothetical protein;Dbxref=Genbank:YP_001534452.1,GeneID:5710970;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534452.1;transl_table=11
NC_009952.1	RefSeq	gene	3286328	3287092	.	-	.	ID=gene3157;Name=gltA1;Dbxref=GeneID:5710971;gbkey=Gene;gene=gltA1;locus_tag=Dshi_3119
NC_009952.1	RefSeq	CDS	3286328	3287092	.	-	0	ID=cds3110;Name=YP_001534453.1;Parent=gene3157;Note=KEGG: sit:TM1040_2728 citrate synthase;Dbxref=Genbank:YP_001534453.1,GeneID:5710971;gbkey=CDS;gene=gltA1;product=citrate synthase;protein_id=YP_001534453.1;transl_table=11
NC_009952.1	RefSeq	gene	3287089	3288279	.	-	.	ID=gene3158;Name=yfdW2;Dbxref=GeneID:5710972;gbkey=Gene;gene=yfdW2;locus_tag=Dshi_3120
NC_009952.1	RefSeq	CDS	3287089	3288279	.	-	0	ID=cds3111;Name=YP_001534454.1;Parent=gene3158;Note=PFAM: CoA-transferase family III PRK05398 formyl-coenzyme A transferase KEGG: sit:TM1040_2729 L-carnitine dehydratase%2Fbile acid-inducible protein F%3B Formyl-CoA transferase;Dbxref=Genbank:YP_001534454.1,GeneID:5710972;gbkey=CDS;gene=yfdW2;product=formyl-coenzyme A transferase;protein_id=YP_001534454.1;transl_table=11
NC_009952.1	RefSeq	gene	3288269	3289786	.	-	.	ID=gene3159;Name=yfdW2;Dbxref=GeneID:5710973;gbkey=Gene;gene=yfdW2;locus_tag=Dshi_3121
NC_009952.1	RefSeq	CDS	3288269	3289786	.	-	0	ID=cds3112;Name=YP_001534455.1;Parent=gene3159;Note=PFAM: protein of unknown function DUF112 transmembrane COG3333 - Uncharacterized protein conserved in bacteria;Dbxref=Genbank:YP_001534455.1,GeneID:5710973;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534455.1;transl_table=11
NC_009952.1	RefSeq	gene	3289790	3290278	.	-	.	ID=gene3160;Name=Dshi_3122;Dbxref=GeneID:5710974;gbkey=Gene;locus_tag=Dshi_3122
NC_009952.1	RefSeq	CDS	3289790	3290278	.	-	0	ID=cds3113;Name=YP_001534456.1;Parent=gene3160;Note=KEGG: rde:RD1_2947 hypothetical protein;Dbxref=Genbank:YP_001534456.1,GeneID:5710974;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534456.1;transl_table=11
NC_009952.1	RefSeq	gene	3290359	3291339	.	-	.	ID=gene3161;Name=Dshi_3123;Dbxref=GeneID:5710975;gbkey=Gene;locus_tag=Dshi_3123
NC_009952.1	RefSeq	CDS	3290359	3291339	.	-	0	ID=cds3114;Name=YP_001534457.1;Parent=gene3161;Note=COG3181 Uncharacterized protein conserved in bacteria KEGG: rde:RD1_2946 hypothetical protein;Dbxref=Genbank:YP_001534457.1,GeneID:5710975;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534457.1;transl_table=11
NC_009952.1	RefSeq	gene	3291441	3292106	.	+	.	ID=gene3162;Name=qseB;Dbxref=GeneID:5710976;gbkey=Gene;gene=qseB;locus_tag=Dshi_3124
NC_009952.1	RefSeq	CDS	3291441	3292106	.	+	0	ID=cds3115;Name=YP_001534458.1;Parent=gene3162;Note=PFAM: response regulator receiver%3B transcriptional regulator domain protein KEGG: sit:TM1040_2733 two component transcriptional regulator%2C winged helix family COG0745 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain;Dbxref=Genbank:YP_001534458.1,GeneID:5710976;gbkey=CDS;gene=qseB;product=transcriptional regulatory protein QseB;protein_id=YP_001534458.1;transl_table=11
NC_009952.1	RefSeq	gene	3292103	3293476	.	+	.	ID=gene3163;Name=qseC;Dbxref=GeneID:5710977;gbkey=Gene;gene=qseC;locus_tag=Dshi_3125
NC_009952.1	RefSeq	CDS	3292103	3293476	.	+	0	ID=cds3116;Name=YP_001534459.1;Parent=gene3163;Note=PFAM:HATPase_c Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase %2C2CSK_N Two-component sensor kinase N-terminal KEGG: sit:TM1040_2734 periplasmic sensor signal transduction histidine kinase;Dbxref=Genbank:YP_001534459.1,GeneID:5710977;gbkey=CDS;gene=qseC;product=sensor protein QseC;protein_id=YP_001534459.1;transl_table=11
NC_009952.1	RefSeq	gene	3293446	3294447	.	+	.	ID=gene3164;Name=qseC;Dbxref=GeneID:5710978;gbkey=Gene;gene=qseC;locus_tag=Dshi_3126
NC_009952.1	RefSeq	CDS	3293446	3294447	.	+	0	ID=cds3117;Name=YP_001534460.1;Parent=gene3164;Note=KEGG: sil:SPO0189 putative iron%28III%29 transport system substrate-binding protein. Annotation was derived from R. denitrificans;Dbxref=Genbank:YP_001534460.1,GeneID:5710978;gbkey=CDS;product=putative periplasmic iron-binding protein;protein_id=YP_001534460.1;transl_table=11
NC_009952.1	RefSeq	gene	3294602	3296341	.	+	.	ID=gene3165;Name=ugpB2;Dbxref=GeneID:5710979;gbkey=Gene;gene=ugpB2;locus_tag=Dshi_3127
NC_009952.1	RefSeq	CDS	3294602	3296341	.	+	0	ID=cds3118;Name=YP_001534461.1;Parent=gene3165;Note=PFAM: extracellular solute-binding protein family 1 KEGG: rde:RD1_4122 sugar ABC transporter%2C periplasmic sugar-binding protein%2C putative%3B periplasmic sugar-binding protein%2C putative;Dbxref=Genbank:YP_001534461.1,GeneID:5710979;gbkey=CDS;gene=ugpB2;product=sugar ABC transporter;protein_id=YP_001534461.1;transl_table=11
NC_009952.1	RefSeq	gene	3296414	3297475	.	+	.	ID=gene3166;Name=ugpC5;Dbxref=GeneID:5710980;gbkey=Gene;gene=ugpC5;locus_tag=Dshi_3128
NC_009952.1	RefSeq	CDS	3296414	3297475	.	+	0	ID=cds3119;Name=YP_001534462.1;Parent=gene3166;Note=PFAM: ABC transporter related%3B Transport-associated OB domain protein pfam00005%2CSMART: AAA ATPase KEGG: rde:RD1_4120 SN-glycerol-3-phosphate transport ATP-binding protein%3B ATP-binding protein %28sn-glycerol-3-phosphate import ATP-binding protein ugpC%29;Dbxref=Genbank:YP_001534462.1,GeneID:5710980;gbkey=CDS;gene=ugpC5;product=sugar ABC transporter;protein_id=YP_001534462.1;transl_table=11
NC_009952.1	RefSeq	gene	3297477	3298550	.	+	.	ID=gene3167;Name=ugpC1;Dbxref=GeneID:5710981;gbkey=Gene;gene=ugpC1;locus_tag=Dshi_3129
NC_009952.1	RefSeq	CDS	3297477	3298550	.	+	0	ID=cds3120;Name=YP_001534463.1;Parent=gene3167;Note=PFAM: ABC transporter related%3B pfam00005%2C Transport-associated OB domain protein SMART: AAA ATPase KEGG: rde:RD1_4119 sugar ABC transporter%2C ATP-binding protein%2C putative%3B ATP-binding protein %28sn-glycerol-3-phosphate import ATP-binding protein ugpC%29;Dbxref=Genbank:YP_001534463.1,GeneID:5710981;gbkey=CDS;gene=ugpC1;product=sugar ABC transporter;protein_id=YP_001534463.1;transl_table=11
NC_009952.1	RefSeq	gene	3298547	3299410	.	+	.	ID=gene3168;Name=ugpA2;Dbxref=GeneID:5710982;gbkey=Gene;gene=ugpA2;locus_tag=Dshi_3130
NC_009952.1	RefSeq	CDS	3298547	3299410	.	+	0	ID=cds3121;Name=YP_001534464.1;Parent=gene3168;Note=PFAM: binding-protein-dependent transport systems inner membrane component KEGG: rde:RD1_4118 sugar ABC transporter%2C permease protein%2C putative COG1175 - ABC-type sugar transport systems%2C permease components %2CTMH%3B permease protein%2C putative %28MSD%29;Dbxref=Genbank:YP_001534464.1,GeneID:5710982;gbkey=CDS;gene=ugpA2;product=sugar ABC transporter;protein_id=YP_001534464.1;transl_table=11
NC_009952.1	RefSeq	gene	3299407	3300204	.	+	.	ID=gene3169;Name=ugpE1;Dbxref=GeneID:5710983;gbkey=Gene;gene=ugpE1;locus_tag=Dshi_3131
NC_009952.1	RefSeq	CDS	3299407	3300204	.	+	0	ID=cds3122;Name=YP_001534465.1;Parent=gene3169;Note=PFAM: binding-protein-dependent transport systems inner membrane component KEGG: jan:Jann_4088 binding-protein-dependent transport systems inner membrane component COG0395 - ABC-type sugar transport system%2C permease component %2C TMH%3B permease protein%2C putative %28MSD%29;Dbxref=Genbank:YP_001534465.1,GeneID:5710983;gbkey=CDS;gene=ugpE1;product=sugar ABC transporter;protein_id=YP_001534465.1;transl_table=11
NC_009952.1	RefSeq	gene	3300204	3300602	.	+	.	ID=gene3170;Name=ugpE1;Dbxref=GeneID:5710984;gbkey=Gene;gene=ugpE1;locus_tag=Dshi_3132
NC_009952.1	RefSeq	CDS	3300204	3300602	.	+	0	ID=cds3123;Name=YP_001534466.1;Parent=gene3170;Note=TMH;Dbxref=Genbank:YP_001534466.1,GeneID:5710984;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534466.1;transl_table=11
NC_009952.1	RefSeq	gene	3300641	3301048	.	+	.	ID=gene3171;Name=Dshi_3133;Dbxref=GeneID:5710985;gbkey=Gene;locus_tag=Dshi_3133
NC_009952.1	RefSeq	CDS	3300641	3301048	.	+	0	ID=cds3124;Name=YP_001534467.1;Parent=gene3171;Note=PFAM: Penicillinase repressor KEGG: rde:RD1_4115 transcriptional regulator%2C putative;Dbxref=Genbank:YP_001534467.1,GeneID:5710985;gbkey=CDS;product=putative transcriptional regulator;protein_id=YP_001534467.1;transl_table=11
NC_009952.1	RefSeq	gene	3301023	3302168	.	+	.	ID=gene3172;Name=Dshi_3134;Dbxref=GeneID:5710986;gbkey=Gene;locus_tag=Dshi_3134
NC_009952.1	RefSeq	CDS	3301023	3302168	.	+	0	ID=cds3125;Name=YP_001534468.1;Parent=gene3172;Note=PFAM: peptidase M56 BlaR1 KEGG: rde:RD1_4114 BlaR1 peptidase M56 domain protein%3B Motif HEXXH;Dbxref=Genbank:YP_001534468.1,GeneID:5710986;gbkey=CDS;product=BlaR1 peptidase M56 domain-containing protein;protein_id=YP_001534468.1;transl_table=11
NC_009952.1	RefSeq	gene	3302652	3303122	.	+	.	ID=gene3173;Name=Dshi_3135;Dbxref=GeneID:5710987;gbkey=Gene;locus_tag=Dshi_3135
NC_009952.1	RefSeq	CDS	3302652	3303122	.	+	0	ID=cds3126;Name=YP_001534469.1;Parent=gene3173;Dbxref=Genbank:YP_001534469.1,GeneID:5710987;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534469.1;transl_table=11
NC_009952.1	RefSeq	gene	3303263	3304162	.	+	.	ID=gene3174;Name=Dshi_3136;Dbxref=GeneID:5710988;gbkey=Gene;locus_tag=Dshi_3136
NC_009952.1	RefSeq	CDS	3303263	3304162	.	+	0	ID=cds3127;Name=YP_001534470.1;Parent=gene3174;Note=LipoP1.0 KEGG: jan:Jann_1313 lipoprotein%2C putative;Dbxref=Genbank:YP_001534470.1,GeneID:5710988;gbkey=CDS;product=putative lipoprotein;protein_id=YP_001534470.1;transl_table=11
NC_009952.1	RefSeq	gene	3304170	3304880	.	-	.	ID=gene3175;Name=Dshi_3137;Dbxref=GeneID:5710989;gbkey=Gene;locus_tag=Dshi_3137
NC_009952.1	RefSeq	CDS	3304170	3304880	.	-	0	ID=cds3128;Name=YP_001534471.1;Parent=gene3175;Dbxref=Genbank:YP_001534471.1,GeneID:5710989;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534471.1;transl_table=11
NC_009952.1	RefSeq	gene	3304846	3305598	.	-	.	ID=gene3176;Name=Dshi_3138;Dbxref=GeneID:5710990;gbkey=Gene;locus_tag=Dshi_3138
NC_009952.1	RefSeq	CDS	3304846	3305598	.	-	0	ID=cds3129;Name=YP_001534472.1;Parent=gene3176;Note=KEGG: smd:Smed_4297 alpha%2Fbeta hydrolase fold;Dbxref=Genbank:YP_001534472.1,GeneID:5710990;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534472.1;transl_table=11
NC_009952.1	RefSeq	gene	3305602	3306732	.	-	.	ID=gene3177;Name=Dshi_3139;Dbxref=GeneID:5712195;gbkey=Gene;locus_tag=Dshi_3139
NC_009952.1	RefSeq	CDS	3305602	3306732	.	-	0	ID=cds3130;Name=YP_001534473.1;Parent=gene3177;Note=KEGG: jan:Jann_1112 cupin 2 protein;Dbxref=Genbank:YP_001534473.1,GeneID:5712195;gbkey=CDS;product=cupin domain-containing protein;protein_id=YP_001534473.1;transl_table=11
NC_009952.1	RefSeq	gene	3306735	3307787	.	-	.	ID=gene3178;Name=Dshi_3140;Dbxref=GeneID:5712196;gbkey=Gene;locus_tag=Dshi_3140
NC_009952.1	RefSeq	CDS	3306735	3307787	.	-	0	ID=cds3131;Name=YP_001534474.1;Parent=gene3178;Note=PFAM: regulatory protein LacI%3B periplasmic binding protein%2FLacI transcriptional regulator KEGG: rde:RD1_3944 transcriptional regulatory protein%2C LacI family%2C putative%3B LacI family;Dbxref=Genbank:YP_001534474.1,GeneID:5712196;gbkey=CDS;product=transcriptional regulator;protein_id=YP_001534474.1;transl_table=11
NC_009952.1	RefSeq	gene	3307792	3308850	.	-	.	ID=gene3179;Name=ugpC3;Dbxref=GeneID:5712197;gbkey=Gene;gene=ugpC3;locus_tag=Dshi_3141
NC_009952.1	RefSeq	CDS	3307792	3308850	.	-	0	ID=cds3132;Name=YP_001534475.1;Parent=gene3179;Note=PFAM: ABC transporter related%3B Transport-associated OB domain protein pfam00005%2CSMART: AAA ATPase KEGG: jan:Jann_4087 ABC transporter related%3B ATP-binding protein %28sn-glycerol-3-phosphate import ATP-binding protein ugpC%29;Dbxref=Genbank:YP_001534475.1,GeneID:5712197;gbkey=CDS;gene=ugpC3;product=sugar ABC transporter;protein_id=YP_001534475.1;transl_table=11
NC_009952.1	RefSeq	gene	3308891	3309718	.	-	.	ID=gene3180;Name=ugpE2;Dbxref=GeneID:5712198;gbkey=Gene;gene=ugpE2;locus_tag=Dshi_3142
NC_009952.1	RefSeq	CDS	3308891	3309718	.	-	0	ID=cds3133;Name=YP_001534476.1;Parent=gene3180;Note=PFAM: binding-protein-dependent transport systems inner membrane component KEGG: jan:Jann_4088 binding-protein-dependent transport systems inner membrane component COG0395 - ABC-type sugar transport system%2C permease component %2CTMH%3B permease protein%2C putative %28MSD%29;Dbxref=Genbank:YP_001534476.1,GeneID:5712198;gbkey=CDS;gene=ugpE2;product=sugar ABC transporter;protein_id=YP_001534476.1;transl_table=11
NC_009952.1	RefSeq	gene	3309722	3310594	.	-	.	ID=gene3181;Name=ugpA3;Dbxref=GeneID:5712199;gbkey=Gene;gene=ugpA3;locus_tag=Dshi_3143
NC_009952.1	RefSeq	CDS	3309722	3310594	.	-	0	ID=cds3134;Name=YP_001534477.1;Parent=gene3181;Note=PFAM: binding-protein-dependent transport systems inner membrane component KEGG: jan:Jann_4089 binding-protein-dependent transport systems inner membrane component %3BCOG1175 - ABC-type sugar transport systems%2C permease components %2CTMH%3B permease protein%2C putative %28MSD%29;Dbxref=Genbank:YP_001534477.1,GeneID:5712199;gbkey=CDS;gene=ugpA3;product=sugar ABC transporter;protein_id=YP_001534477.1;transl_table=11
NC_009952.1	RefSeq	gene	3310655	3312037	.	-	.	ID=gene3182;Name=ugpB3;Dbxref=GeneID:5712200;gbkey=Gene;gene=ugpB3;locus_tag=Dshi_3144
NC_009952.1	RefSeq	CDS	3310655	3312037	.	-	0	ID=cds3135;Name=YP_001534478.1;Parent=gene3182;Note=PFAM: extracellular solute-binding protein family 1 COG1653 - ABC-type sugar transport system%2C periplasmic component;Dbxref=Genbank:YP_001534478.1,GeneID:5712200;gbkey=CDS;gene=ugpB3;product=sugar ABC transporter periplasmic sugar-binding protein;protein_id=YP_001534478.1;transl_table=11
NC_009952.1	RefSeq	gene	3312119	3312880	.	+	.	ID=gene3183;Name=garL;Dbxref=GeneID:5712201;gbkey=Gene;gene=garL;locus_tag=Dshi_3145
NC_009952.1	RefSeq	CDS	3312119	3312880	.	+	0	ID=cds3136;Name=YP_001534479.1;Parent=gene3183;Note=PFAM: HpcH%2FHpaI aldolase KEGG: mpt:Mpe_A0974 2-dehydro-3-deoxyglucarate aldolase %2CCOG3836 - 2%2C4-dihydroxyhept-2-ene-1%2C7-dioic acid aldolase %2Cgood sp-hit%3B KDGlucA%3B 5-keto-4-deoxy-D-glucarate aldolase%3B DDG aldolase%3B 2-dehydro-3-deoxygalactarate aldolase%3B 2-keto-3-deoxyglucarate aldolase;Dbxref=Genbank:YP_001534479.1,GeneID:5712201;gbkey=CDS;gene=garL;product=2-dehydro-3-deoxyglucarate aldolase;protein_id=YP_001534479.1;transl_table=11
NC_009952.1	RefSeq	gene	3312960	3313922	.	+	.	ID=gene3184;Name=accA;Dbxref=GeneID:5712202;gbkey=Gene;gene=accA;locus_tag=Dshi_3146
NC_009952.1	RefSeq	CDS	3312960	3313922	.	+	0	ID=cds3137;Name=YP_001534480.1;Parent=gene3184;Note=catalyzes the carboxylation of acetyl-CoA to malonyl-CoA%3B forms a tetramer composed of two alpha %28AccA%29 and two beta %28AccD%29 subunits%3B one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein;Dbxref=Genbank:YP_001534480.1,GeneID:5712202;gbkey=CDS;gene=accA;product=acetyl-CoA carboxylase carboxyltransferase subunit alpha;protein_id=YP_001534480.1;transl_table=11
NC_009952.1	RefSeq	gene	3313957	3314697	.	+	.	ID=gene3185;Name=Dshi_3147;Dbxref=GeneID:5712203;gbkey=Gene;locus_tag=Dshi_3147
NC_009952.1	RefSeq	CDS	3313957	3314697	.	+	0	ID=cds3138;Name=YP_001534481.1;Parent=gene3185;Note=PFAM: protein of unknown function DUF306 Meta and HslJ KEGG: sil:SPO2951 hypothetical protein COG3126 - Uncharacterized protein conserved in bacteria %3Bgood GC-Frame Plot;Dbxref=Genbank:YP_001534481.1,GeneID:5712203;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534481.1;transl_table=11
NC_009952.1	RefSeq	gene	3314700	3315176	.	-	.	ID=gene3186;Name=Dshi_3148;Dbxref=GeneID:5712204;gbkey=Gene;locus_tag=Dshi_3148
NC_009952.1	RefSeq	CDS	3314700	3315176	.	-	0	ID=cds3139;Name=YP_001534482.1;Parent=gene3186;Dbxref=Genbank:YP_001534482.1,GeneID:5712204;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534482.1;transl_table=11
NC_009952.1	RefSeq	gene	3315173	3315985	.	-	.	ID=gene3187;Name=ddpX;Dbxref=GeneID:5712205;gbkey=Gene;gene=ddpX;locus_tag=Dshi_3149
NC_009952.1	RefSeq	CDS	3315173	3315985	.	-	0	ID=cds3140;Name=YP_001534483.1;Parent=gene3187;Note=PFAM: peptidase M15D vanX D-ala-D-ala dipeptidase KEGG: nmc:NMC1731 ddpX%3B putative D-alanyl-D-alanine dipeptidase;Dbxref=Genbank:YP_001534483.1,GeneID:5712205;gbkey=CDS;gene=ddpX;product=putative D-alanyl-d-alanine dipeptidase;protein_id=YP_001534483.1;transl_table=11
NC_009952.1	RefSeq	gene	3316090	3316944	.	+	.	ID=gene3188;Name=dat;Dbxref=GeneID:5712206;gbkey=Gene;gene=dat;locus_tag=Dshi_3150
NC_009952.1	RefSeq	CDS	3316090	3316944	.	+	0	ID=cds3141;Name=YP_001534484.1;Parent=gene3188;Note=TIGR01121D-amino acid aminotransferase PFAM: aminotransferase class IV KEGG: jan:Jann_0363 aminotransferase%2C class IV %3Bgood blast hit%3B DAAT%3B D-amino acid transaminase%3B D-amino acid aminotransferase%3B D-aspartate aminotransferase;Dbxref=Genbank:YP_001534484.1,GeneID:5712206;gbkey=CDS;gene=dat;product=D-alanine aminotransferase;protein_id=YP_001534484.1;transl_table=11
NC_009952.1	RefSeq	gene	3316985	3317893	.	+	.	ID=gene3189;Name=Dshi_3151;Dbxref=GeneID:5712207;gbkey=Gene;locus_tag=Dshi_3151
NC_009952.1	RefSeq	CDS	3316985	3317893	.	+	0	ID=cds3142;Name=YP_001534485.1;Parent=gene3189;Note=PFAM: regulatory protein LysR%3B LysR substrate-binding KEGG: sil:SPO1110 transcriptional regulator%2C LysR family COG0583 - Transcriptional regulator%3B LysR family;Dbxref=Genbank:YP_001534485.1,GeneID:5712207;gbkey=CDS;product=transcriptional regulator;protein_id=YP_001534485.1;transl_table=11
NC_009952.1	RefSeq	gene	3317939	3318841	.	+	.	ID=gene3190;Name=Dshi_3152;Dbxref=GeneID:5712208;gbkey=Gene;locus_tag=Dshi_3152
NC_009952.1	RefSeq	CDS	3317939	3318841	.	+	0	ID=cds3143;Name=YP_001534486.1;Parent=gene3190;Note=PFAM: protein of unknown function DUF1445 KEGG: sil:SPO1111 hypothetical protein;Dbxref=Genbank:YP_001534486.1,GeneID:5712208;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534486.1;transl_table=11
NC_009952.1	RefSeq	gene	3318825	3319859	.	+	.	ID=gene3191;Name=Dshi_3153;Dbxref=GeneID:5712209;gbkey=Gene;locus_tag=Dshi_3153
NC_009952.1	RefSeq	CDS	3318825	3319859	.	+	0	ID=cds3144;Name=YP_001534487.1;Parent=gene3191;Note=PFAM: TRAP dicarboxylate transporter- DctP subunit KEGG: sil:SPO1112 TRAP transporter%2C periplasmic protein;Dbxref=Genbank:YP_001534487.1,GeneID:5712209;gbkey=CDS;product=TRAP dicarboxylate transporter subunit DctP;protein_id=YP_001534487.1;transl_table=11
NC_009952.1	RefSeq	gene	3319882	3320430	.	+	.	ID=gene3192;Name=Dshi_3154;Dbxref=GeneID:5712210;gbkey=Gene;locus_tag=Dshi_3154
NC_009952.1	RefSeq	CDS	3319882	3320430	.	+	0	ID=cds3145;Name=YP_001534488.1;Parent=gene3192;Note=KEGG: sil:SPO1113 TRAP transporter%2C transmembrane protein%2C putative%2CTMH;Dbxref=Genbank:YP_001534488.1,GeneID:5712210;gbkey=CDS;product=TRAP dicarboxylate transporter subunit DctQ;protein_id=YP_001534488.1;transl_table=11
NC_009952.1	RefSeq	gene	3320427	3321716	.	+	.	ID=gene3193;Name=Dshi_3155;Dbxref=GeneID:5712211;gbkey=Gene;locus_tag=Dshi_3155
NC_009952.1	RefSeq	CDS	3320427	3321716	.	+	0	ID=cds3146;Name=YP_001534489.1;Parent=gene3193;Note=TIGRFAM: TRAP dicarboxylate transporter%2C DctM subunit PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit KEGG: sil:SPO1114 TRAP dicarboxylate transporter%2C DctM subunit%2CTMH;Dbxref=Genbank:YP_001534489.1,GeneID:5712211;gbkey=CDS;product=TRAP dicarboxylate transporter subunit DctM;protein_id=YP_001534489.1;transl_table=11
NC_009952.1	RefSeq	gene	3321720	3322373	.	+	.	ID=gene3194;Name=Dshi_3156;Dbxref=GeneID:5712212;gbkey=Gene;locus_tag=Dshi_3156
NC_009952.1	RefSeq	CDS	3321720	3322373	.	+	0	ID=cds3147;Name=YP_001534490.1;Parent=gene3194;Dbxref=Genbank:YP_001534490.1,GeneID:5712212;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534490.1;transl_table=11
NC_009952.1	RefSeq	gene	3322458	3323468	.	+	.	ID=gene3195;Name=Dshi_3157;Dbxref=GeneID:5712213;gbkey=Gene;locus_tag=Dshi_3157
NC_009952.1	RefSeq	CDS	3322458	3323468	.	+	0	ID=cds3148;Name=YP_001534491.1;Parent=gene3195;Note=PFAM: TRAP dicarboxylate transporter- DctP subunit KEGG: csa:Csal_2479 TRAP dicarboxylate transporter%2C DctP subunit;Dbxref=Genbank:YP_001534491.1,GeneID:5712213;gbkey=CDS;product=TRAP dicarboxylate transporter subunit DctP;protein_id=YP_001534491.1;transl_table=11
NC_009952.1	RefSeq	gene	3323471	3323968	.	+	.	ID=gene3196;Name=Dshi_3158;Dbxref=GeneID:5712214;gbkey=Gene;locus_tag=Dshi_3158
NC_009952.1	RefSeq	CDS	3323471	3323968	.	+	0	ID=cds3149;Name=YP_001534492.1;Parent=gene3196;Note=PFAM: Tripartite ATP-independent periplasmic transporter DctQ component KEGG: rsq:Rsph17025_2045 tripartite ATP-independent periplasmic transporter%2C DctQ component%2CTMH;Dbxref=Genbank:YP_001534492.1,GeneID:5712214;gbkey=CDS;product=TRAP dicarboxylate transporter subunit DctQ;protein_id=YP_001534492.1;transl_table=11
NC_009952.1	RefSeq	gene	3323968	3325263	.	+	.	ID=gene3197;Name=Dshi_3159;Dbxref=GeneID:5712215;gbkey=Gene;locus_tag=Dshi_3159
NC_009952.1	RefSeq	CDS	3323968	3325263	.	+	0	ID=cds3150;Name=YP_001534493.1;Parent=gene3197;Note=TIGRFAM: TRAP dicarboxylate transporter%2C DctM subunit PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit KEGG: bbr:BB0721 hypothetical protein%2CTMH;Dbxref=Genbank:YP_001534493.1,GeneID:5712215;gbkey=CDS;product=TRAP dicarboxylate transporter subunit DctM;protein_id=YP_001534493.1;transl_table=11
NC_009952.1	RefSeq	gene	3325448	3325705	.	-	.	ID=gene3198;Name=Dshi_3160;Dbxref=GeneID:5712216;gbkey=Gene;locus_tag=Dshi_3160
NC_009952.1	RefSeq	CDS	3325448	3325705	.	-	0	ID=cds3151;Name=YP_001534494.1;Parent=gene3198;Note=TMH;Dbxref=Genbank:YP_001534494.1,GeneID:5712216;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534494.1;transl_table=11
NC_009952.1	RefSeq	gene	3325753	3326466	.	-	.	ID=gene3199;Name=napC;Dbxref=GeneID:5712217;gbkey=Gene;gene=napC;locus_tag=Dshi_3161
NC_009952.1	RefSeq	CDS	3325753	3326466	.	-	0	ID=cds3152;Name=YP_001534495.1;Parent=gene3199;Note=PFAM: NapC%2FNirT cytochrome c domain protein KEGG: rsq:Rsph17025_3218 4Fe-4S ferredoxin%2C iron-sulfur binding domain protein;Dbxref=Genbank:YP_001534495.1,GeneID:5712217;gbkey=CDS;gene=napC;product=cytochrome c-type protein NapC;protein_id=YP_001534495.1;transl_table=11
NC_009952.1	RefSeq	gene	3326494	3326937	.	-	.	ID=gene3200;Name=napB;Dbxref=GeneID:5712218;gbkey=Gene;gene=napB;locus_tag=Dshi_3162
NC_009952.1	RefSeq	CDS	3326494	3326937	.	-	0	ID=cds3153;Name=YP_001534496.1;Parent=gene3200;Note=PFAM: Nitrate reductase cytochrome c-type subunit %28NapB%29 KEGG: rsq:Rsph17025_3219 polyferredoxin-like protein;Dbxref=Genbank:YP_001534496.1,GeneID:5712218;gbkey=CDS;gene=napB;product=cytochrome c-type protein NapB;protein_id=YP_001534496.1;transl_table=11
NC_009952.1	RefSeq	gene	3326957	3327865	.	-	.	ID=gene3201;Name=napH;Dbxref=GeneID:5712219;gbkey=Gene;gene=napH;locus_tag=Dshi_3163
NC_009952.1	RefSeq	CDS	3326957	3327865	.	-	0	ID=cds3154;Name=YP_001534497.1;Parent=gene3201;Note=part of NapHG quinol dehydrogenase%3B couples electron transfer from ubiquinone-ubiquinol couple via NapC%2FB to NapA;Dbxref=Genbank:YP_001534497.1,GeneID:5712219;gbkey=CDS;gene=napH;product=quinol dehydrogenase membrane component;protein_id=YP_001534497.1;transl_table=11
NC_009952.1	RefSeq	gene	3327862	3328674	.	-	.	ID=gene3202;Name=napG;Dbxref=GeneID:5712220;gbkey=Gene;gene=napG;locus_tag=Dshi_3164
NC_009952.1	RefSeq	CDS	3327862	3328674	.	-	0	ID=cds3155;Name=YP_001534498.1;Parent=gene3202;Note=TIGRFAM: MauM%2FNapG family ferredoxin-type protein PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein KEGG: dar:Daro_3839 napG%3B MauM%2FNapG ferredoxin-type protein;Dbxref=Genbank:YP_001534498.1,GeneID:5712220;gbkey=CDS;gene=napG;product=ferredoxin-type protein NapG;protein_id=YP_001534498.1;transl_table=11
NC_009952.1	RefSeq	gene	3328696	3331191	.	-	.	ID=gene3203;Name=napA;Dbxref=GeneID:5712221;gbkey=Gene;gene=napA;locus_tag=Dshi_3165
NC_009952.1	RefSeq	CDS	3328696	3331191	.	-	0	ID=cds3156;Name=YP_001534499.1;Parent=gene3203;Note=periplasmic%3B catalytic subunit%3B with NapBC catalyzes the reduction of nitrate to nitrite%3B NapAB receives electrons from NapC;Dbxref=Genbank:YP_001534499.1,GeneID:5712221;gbkey=CDS;gene=napA;product=nitrate reductase catalytic subunit;protein_id=YP_001534499.1;transl_table=11
NC_009952.1	RefSeq	gene	3331178	3331480	.	-	.	ID=gene3204;Name=napD;Dbxref=GeneID:5712222;gbkey=Gene;gene=napD;locus_tag=Dshi_3166
NC_009952.1	RefSeq	CDS	3331178	3331480	.	-	0	ID=cds3157;Name=YP_001534500.1;Parent=gene3204;Note=PFAM: NapD family protein KEGG: rsq:Rsph17025_3223 hypothetical protein;Dbxref=Genbank:YP_001534500.1,GeneID:5712222;gbkey=CDS;gene=napD;product=periplasmic nitrate reductase NapD;protein_id=YP_001534500.1;transl_table=11
NC_009952.1	RefSeq	gene	3331477	3331989	.	-	.	ID=gene3205;Name=napF;Dbxref=GeneID:5712223;gbkey=Gene;gene=napF;locus_tag=Dshi_3167
NC_009952.1	RefSeq	CDS	3331477	3331989	.	-	0	ID=cds3158;Name=YP_001534501.1;Parent=gene3205;Note=TIGRFAM: ferredoxin-type protein NapF PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein KEGG: sbl:Sbal_1481 ferredoxin-type protein NapF;Dbxref=Genbank:YP_001534501.1,GeneID:5712223;gbkey=CDS;gene=napF;product=ferredoxin-type protein napF;protein_id=YP_001534501.1;transl_table=11
NC_009952.1	RefSeq	gene	3332404	3333345	.	+	.	ID=gene3206;Name=apbE1;Dbxref=GeneID:5712224;gbkey=Gene;gene=apbE1;locus_tag=Dshi_3168
NC_009952.1	RefSeq	CDS	3332404	3333345	.	+	0	ID=cds3159;Name=YP_001534502.1;Parent=gene3206;Note=PFAM: ApbE family lipoprotein KEGG: pde:Pden_2485 ApbE family lipoprotein;Dbxref=Genbank:YP_001534502.1,GeneID:5712224;gbkey=CDS;gene=apbE1;product=ApbE family lipoprotein;protein_id=YP_001534502.1;transl_table=11
NC_009952.1	RefSeq	gene	3333379	3333759	.	+	.	ID=gene3207;Name=cycA1;Dbxref=GeneID:5712225;gbkey=Gene;gene=cycA1;locus_tag=Dshi_3169
NC_009952.1	RefSeq	CDS	3333379	3333759	.	+	0	ID=cds3160;Name=YP_001534503.1;Parent=gene3207;Note=PFAM: cytochrome c class I KEGG: sil:SPOA0055 cytochrome c family protein;Dbxref=Genbank:YP_001534503.1,GeneID:5712225;gbkey=CDS;gene=cycA1;product=cytochrome c2;protein_id=YP_001534503.1;transl_table=11
NC_009952.1	RefSeq	gene	3333779	3334027	.	-	.	ID=gene3208;Name=Dshi_3170;Dbxref=GeneID:5712226;gbkey=Gene;locus_tag=Dshi_3170
NC_009952.1	RefSeq	CDS	3333779	3334027	.	-	0	ID=cds3161;Name=YP_001534504.1;Parent=gene3208;Dbxref=Genbank:YP_001534504.1,GeneID:5712226;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534504.1;transl_table=11
NC_009952.1	RefSeq	gene	3334024	3334740	.	-	.	ID=gene3209;Name=cbiX1;Dbxref=GeneID:5712227;gbkey=Gene;gene=cbiX1;locus_tag=Dshi_3171
NC_009952.1	RefSeq	CDS	3334024	3334740	.	-	0	ID=cds3162;Name=YP_001534505.1;Parent=gene3209;Note=PFAM: cobalamin %28vitamin B12%29 biosynthesis CbiX protein KEGG: rde:RD1_1574 cbiX%3B CbiX protein%2C putative;Dbxref=Genbank:YP_001534505.1,GeneID:5712227;gbkey=CDS;gene=cbiX1;product=cobalamin %28vitamin B12%29 biosynthesis CbiX protein;protein_id=YP_001534505.1;transl_table=11
NC_009952.1	RefSeq	gene	3334742	3336295	.	-	.	ID=gene3210;Name=nirN;Dbxref=GeneID:5712228;gbkey=Gene;gene=nirN;locus_tag=Dshi_3172
NC_009952.1	RefSeq	CDS	3334742	3336295	.	-	0	ID=cds3163;Name=YP_001534506.1;Parent=gene3210;Note=PFAM: cytochrome d1 heme region KEGG: sil:SPOA0228 nitrite reductase protein N;Dbxref=Genbank:YP_001534506.1,GeneID:5712228;gbkey=CDS;gene=nirN;product=nitrite reductase protein N;protein_id=YP_001534506.1;transl_table=11
NC_009952.1	RefSeq	gene	3336270	3337484	.	-	.	ID=gene3211;Name=nirJ;Dbxref=GeneID:5712229;gbkey=Gene;gene=nirJ;locus_tag=Dshi_3173
NC_009952.1	RefSeq	CDS	3336270	3337484	.	-	0	ID=cds3164;Name=YP_001534507.1;Parent=gene3211;Note=PFAM: Radical SAM domain protein SMART: Elongator protein 3%2FMiaB%2FNifB KEGG: sil:SPOA0227 nitrite reductase heme biosynthesis J protein;Dbxref=Genbank:YP_001534507.1,GeneID:5712229;gbkey=CDS;gene=nirJ;product=putative nitrite reductase heme biosynthesis J protein;protein_id=YP_001534507.1;transl_table=11
NC_009952.1	RefSeq	gene	3337486	3337971	.	-	.	ID=gene3212;Name=nirH;Dbxref=GeneID:5712230;gbkey=Gene;gene=nirH;locus_tag=Dshi_3174
NC_009952.1	RefSeq	CDS	3337486	3337971	.	-	0	ID=cds3165;Name=YP_001534508.1;Parent=gene3212;Note=KEGG: sil:SPOA0226 nitrite reductase heme biosynthesis H protein%2C COG1522 - Transcriptional regulators;Dbxref=Genbank:YP_001534508.1,GeneID:5712230;gbkey=CDS;gene=nirH;product=putative nitrite reductase heme biosynthesis H protein;protein_id=YP_001534508.1;transl_table=11
NC_009952.1	RefSeq	gene	3337968	3338417	.	-	.	ID=gene3213;Name=nirG;Dbxref=GeneID:5712231;gbkey=Gene;gene=nirG;locus_tag=Dshi_3175
NC_009952.1	RefSeq	CDS	3337968	3338417	.	-	0	ID=cds3166;Name=YP_001534509.1;Parent=gene3213;Note=SMART: regulatory protein AsnC%2FLrp family KEGG: rde:RD1_1570 nitrite reductase heme biosynthesis G;Dbxref=Genbank:YP_001534509.1,GeneID:5712231;gbkey=CDS;gene=nirG;product=nitrite reductase heme biosynthesis G;protein_id=YP_001534509.1;transl_table=11
NC_009952.1	RefSeq	gene	3338414	3339409	.	-	.	ID=gene3214;Name=nirD;Dbxref=GeneID:5712232;gbkey=Gene;gene=nirD;locus_tag=Dshi_3176
NC_009952.1	RefSeq	CDS	3338414	3339409	.	-	0	ID=cds3167;Name=YP_001534510.1;Parent=gene3214;Note=KEGG: sil:SPOA0224 nitrite reductase heme biosynthesis D%2FL protein%2C putative;Dbxref=Genbank:YP_001534510.1,GeneID:5712232;gbkey=CDS;gene=nirD;product=nitrite reductase heme biosynthesis D protein;protein_id=YP_001534510.1;transl_table=11
NC_009952.1	RefSeq	gene	3339414	3340580	.	-	.	ID=gene3215;Name=nirF;Dbxref=GeneID:5712233;gbkey=Gene;gene=nirF;locus_tag=Dshi_3177
NC_009952.1	RefSeq	CDS	3339414	3340580	.	-	0	ID=cds3168;Name=YP_001534511.1;Parent=gene3215;Note=PFAM: cytochrome d1 heme region KEGG: rde:RD1_1568 cytochrome cd1;Dbxref=Genbank:YP_001534511.1,GeneID:5712233;gbkey=CDS;gene=nirF;product=cytochrome cd1;protein_id=YP_001534511.1;transl_table=11
NC_009952.1	RefSeq	gene	3340585	3340896	.	-	.	ID=gene3216;Name=nirC;Dbxref=GeneID:5712234;gbkey=Gene;gene=nirC;locus_tag=Dshi_3178
NC_009952.1	RefSeq	CDS	3340585	3340896	.	-	0	ID=cds3169;Name=YP_001534512.1;Parent=gene3216;Note=KEGG: sil:SPOA0222 cytochrome c55X %2C neighborhood%3B c55X;Dbxref=Genbank:YP_001534512.1,GeneID:5712234;gbkey=CDS;gene=nirC;product=putative cytochrome c;protein_id=YP_001534512.1;transl_table=11
NC_009952.1	RefSeq	gene	3340889	3341683	.	-	.	ID=gene3217;Name=nirE;Dbxref=GeneID:5712235;gbkey=Gene;gene=nirE;locus_tag=Dshi_3179
NC_009952.1	RefSeq	CDS	3340889	3341683	.	-	0	ID=cds3170;Name=YP_001534513.1;Parent=gene3217;Note=TIGRFAM: uroporphyrin-III C-methyltransferase PFAM: Uroporphyrin-III C%2Ftetrapyrrole %28Corrin%2FPorphyrin%29 methyltransferase KEGG: sil:SPOA0221 nitrite reductase heme biosynthesis E protein rde:RD1_1566 nirE%3B uroporphyrin-III C-methyltransferase%3B Urogen III methylase;Dbxref=Genbank:YP_001534513.1,GeneID:5712235;gbkey=CDS;gene=nirE;product=uroporphyrinogen-III C-methyltransferase;protein_id=YP_001534513.1;transl_table=11
NC_009952.1	RefSeq	gene	3341772	3343523	.	-	.	ID=gene3218;Name=nirS;Dbxref=GeneID:5712236;gbkey=Gene;gene=nirS;locus_tag=Dshi_3180
NC_009952.1	RefSeq	CDS	3341772	3343523	.	-	0	ID=cds3171;Name=YP_001534514.1;Parent=gene3218;Note=PFAM: cytochrome d1 heme region KEGG: rde:RD1_1565 nitrite reductase%3B Hydroxylamine reductase%3B Cytochrome oxidase%3B Cytochrome cd1;Dbxref=Genbank:YP_001534514.1,GeneID:5712236;gbkey=CDS;gene=nirS;product=nitrite reductase;protein_id=YP_001534514.1;transl_table=11
NC_009952.1	RefSeq	gene	3343637	3345700	.	+	.	ID=gene3219;Name=nosR2;Dbxref=GeneID:5712237;gbkey=Gene;gene=nosR2;locus_tag=Dshi_3181
NC_009952.1	RefSeq	CDS	3343637	3345700	.	+	0	ID=cds3172;Name=YP_001534515.1;Parent=gene3219;Note=PFAM: FMN-binding domain protein KEGG: pde:Pden_2486 FMN-binding domain protein;Dbxref=Genbank:YP_001534515.1,GeneID:5712237;gbkey=CDS;gene=nosR2;product=nitrous oxide reductase regulatory protein NosR;protein_id=YP_001534515.1;transl_table=11
NC_009952.1	RefSeq	gene	3345697	3346887	.	+	.	ID=gene3220;Name=nosR2;Dbxref=GeneID:5712238;gbkey=Gene;gene=nosR2;locus_tag=Dshi_3182
NC_009952.1	RefSeq	CDS	3345697	3346887	.	+	0	ID=cds3173;Name=YP_001534516.1;Parent=gene3220;Note=PFAM: NnrS family protein KEGG: sil:SPOA0219 NnrS%2C putative;Dbxref=Genbank:YP_001534516.1,GeneID:5712238;gbkey=CDS;product=NnrS family protein;protein_id=YP_001534516.1;transl_table=11
NC_009952.1	RefSeq	gene	3346997	3347449	.	+	.	ID=gene3221;Name=norC;Dbxref=GeneID:5712239;gbkey=Gene;gene=norC;locus_tag=Dshi_3183
NC_009952.1	RefSeq	CDS	3346997	3347449	.	+	0	ID=cds3174;Name=YP_001534517.1;Parent=gene3221;Note=KEGG: sil:SPOA0217 nitric oxide reductase%2C small subunit%3B NOR small subunit%3B Nitric oxide reductase cytochrome c subunit;Dbxref=Genbank:YP_001534517.1,GeneID:5712239;gbkey=CDS;gene=norC;product=nitric-oxide reductase subunit C;protein_id=YP_001534517.1;transl_table=11
NC_009952.1	RefSeq	gene	3347463	3348842	.	+	.	ID=gene3222;Name=norB;Dbxref=GeneID:5712240;gbkey=Gene;gene=norB;locus_tag=Dshi_3184
NC_009952.1	RefSeq	CDS	3347463	3348842	.	+	0	ID=cds3175;Name=YP_001534518.1;Parent=gene3222;Note=KEGG: sil:SPOA0216 nitric oxide reductase%2C large subunit rde:RD1_1561 norB%3B nitric-oxide reductase subunit B;Dbxref=Genbank:YP_001534518.1,GeneID:5712240;gbkey=CDS;gene=norB;product=nitric oxide reductase subunit B;protein_id=YP_001534518.1;transl_table=11
NC_009952.1	RefSeq	gene	3348848	3349654	.	+	.	ID=gene3223;Name=norQ;Dbxref=GeneID:5712241;gbkey=Gene;gene=norQ;locus_tag=Dshi_3185
NC_009952.1	RefSeq	CDS	3348848	3349654	.	+	0	ID=cds3176;Name=YP_001534519.1;Parent=gene3223;Note=KEGG: sil:SPOA0215 nitric oxide reductase Q protein;Dbxref=Genbank:YP_001534519.1,GeneID:5712241;gbkey=CDS;gene=norQ;product=nitric oxide reductase Q protein;protein_id=YP_001534519.1;transl_table=11
NC_009952.1	RefSeq	gene	3349663	3351597	.	+	.	ID=gene3224;Name=norD;Dbxref=GeneID:5712242;gbkey=Gene;gene=norD;locus_tag=Dshi_3186
NC_009952.1	RefSeq	CDS	3349663	3351597	.	+	0	ID=cds3177;Name=YP_001534520.1;Parent=gene3224;Note=PFAM: von Willebrand factor type A KEGG: sil:SPOA0214 nitric oxide reductase D protein pde:Pden_2481 von Willebrand factor%2C type A;Dbxref=Genbank:YP_001534520.1,GeneID:5712242;gbkey=CDS;gene=norD;product=nitric oxide reductase D protein;protein_id=YP_001534520.1;transl_table=11
NC_009952.1	RefSeq	gene	3351594	3352148	.	+	.	ID=gene3225;Name=norE;Dbxref=GeneID:5712243;gbkey=Gene;gene=norE;locus_tag=Dshi_3187
NC_009952.1	RefSeq	CDS	3351594	3352148	.	+	0	ID=cds3178;Name=YP_001534521.1;Parent=gene3225;Note=PFAM: cytochrome c oxidase subunit III KEGG:rde:RD1_1558 norE%3B NorE protein;Dbxref=Genbank:YP_001534521.1,GeneID:5712243;gbkey=CDS;gene=norE;product=nitric oxide reductase E protein;protein_id=YP_001534521.1;transl_table=11
NC_009952.1	RefSeq	gene	3352145	3352414	.	+	.	ID=gene3226;Name=norE;Dbxref=GeneID:5712244;gbkey=Gene;gene=norE;locus_tag=Dshi_3188
NC_009952.1	RefSeq	CDS	3352145	3352414	.	+	0	ID=cds3179;Name=YP_001534522.1;Parent=gene3226;Dbxref=Genbank:YP_001534522.1,GeneID:5712244;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534522.1;transl_table=11
NC_009952.1	RefSeq	gene	3352427	3353137	.	-	.	ID=gene3227;Name=Dshi_3189;Dbxref=GeneID:5712245;gbkey=Gene;locus_tag=Dshi_3189
NC_009952.1	RefSeq	CDS	3352427	3353137	.	-	0	ID=cds3180;Name=YP_001534523.1;Parent=gene3227;Note=PFAM: cyclic nucleotide-binding KEGG: sil:SPOA0323 cyclic nucleotide-binding protein%3B similar to DnrD;Dbxref=Genbank:YP_001534523.1,GeneID:5712245;gbkey=CDS;product=transcriptional regulator;protein_id=YP_001534523.1;transl_table=11
NC_009952.1	RefSeq	gene	3353217	3354440	.	-	.	ID=gene3228;Name=hemA3;Dbxref=GeneID:5712246;gbkey=Gene;gene=hemA3;locus_tag=Dshi_3190
NC_009952.1	RefSeq	CDS	3353217	3354440	.	-	0	ID=cds3181;Name=YP_001534524.1;Parent=gene3228;Note=catalyzes the formation of 5-aminolevulinate from succinyl-CoA and glycine;Dbxref=Genbank:YP_001534524.1,GeneID:5712246;gbkey=CDS;gene=hemA3;product=5-aminolevulinate synthase;protein_id=YP_001534524.1;transl_table=11
NC_009952.1	RefSeq	gene	3354578	3355261	.	+	.	ID=gene3229;Name=dnr;Dbxref=GeneID:5712247;gbkey=Gene;gene=dnr;locus_tag=Dshi_3191
NC_009952.1	RefSeq	CDS	3354578	3355261	.	+	0	ID=cds3182;Name=YP_001534525.1;Parent=gene3229;Note=PFAM: cyclic nucleotide-binding SMART: regulatory protein Crp KEGG: sil:SPOA0323 cyclic nucleotide-binding protein;Dbxref=Genbank:YP_001534525.1,GeneID:5712247;gbkey=CDS;gene=dnr;product=transcriptional regulator Dnr;protein_id=YP_001534525.1;transl_table=11
NC_009952.1	RefSeq	gene	3355274	3355933	.	+	.	ID=gene3230;Name=Dshi_3192;Dbxref=GeneID:5712248;gbkey=Gene;locus_tag=Dshi_3192
NC_009952.1	RefSeq	CDS	3355274	3355933	.	+	0	ID=cds3183;Name=YP_001534526.1;Parent=gene3230;Dbxref=Genbank:YP_001534526.1,GeneID:5712248;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534526.1;transl_table=11
NC_009952.1	RefSeq	gene	3355930	3358116	.	+	.	ID=gene3231;Name=nosR3;Dbxref=GeneID:5712249;gbkey=Gene;gene=nosR3;locus_tag=Dshi_3193
NC_009952.1	RefSeq	CDS	3355930	3358116	.	+	0	ID=cds3184;Name=YP_001534527.1;Parent=gene3231;Note=KEGG:rde:RD1_1546 nosR%3B nitrous-oxide reductase regulatory protein NosR PFAM: FMN-binding domain protein;Dbxref=Genbank:YP_001534527.1,GeneID:5712249;gbkey=CDS;gene=nosR3;product=nitrous oxide reductase regulatory protein NosR;protein_id=YP_001534527.1;transl_table=11
NC_009952.1	RefSeq	gene	3358128	3360071	.	+	.	ID=gene3232;Name=nosZ;Dbxref=GeneID:5712250;gbkey=Gene;gene=nosZ;locus_tag=Dshi_3194
NC_009952.1	RefSeq	CDS	3358128	3360071	.	+	0	ID=cds3185;Name=YP_001534528.1;Parent=gene3232;Note=reduces nitrous oxide to nitrogen;Dbxref=Genbank:YP_001534528.1,GeneID:5712250;gbkey=CDS;gene=nosZ;product=nitrous-oxide reductase;protein_id=YP_001534528.1;transl_table=11
NC_009952.1	RefSeq	gene	3360074	3361411	.	+	.	ID=gene3233;Name=nosD;Dbxref=GeneID:5712251;gbkey=Gene;gene=nosD;locus_tag=Dshi_3195
NC_009952.1	RefSeq	CDS	3360074	3361411	.	+	0	ID=cds3186;Name=YP_001534529.1;Parent=gene3233;Note=PFAM: periplasmic copper-binding NosD SMART: Parallel beta-helix repeat%3B Carbohydrate-binding and sugar hydrolysis KEGG: rde:RD1_1548 nosD%3B nitrous oxide maturation protein%3B pde:Pden_4218 periplasmic copper-binding;Dbxref=Genbank:YP_001534529.1,GeneID:5712251;gbkey=CDS;gene=nosD;product=nitrous oxide maturation protein;protein_id=YP_001534529.1;transl_table=11
NC_009952.1	RefSeq	gene	3361377	3362273	.	+	.	ID=gene3234;Name=nosF;Dbxref=GeneID:5712252;gbkey=Gene;gene=nosF;locus_tag=Dshi_3196
NC_009952.1	RefSeq	CDS	3361377	3362273	.	+	0	ID=cds3187;Name=YP_001534530.1;Parent=gene3234;Note=PFAM: ABC transporter related SMART: AAA ATPase KEGG: rde:RD1_1549 nosF%3B copper transport ATP-binding protein NosF;Dbxref=Genbank:YP_001534530.1,GeneID:5712252;gbkey=CDS;gene=nosF;product=copper transport ATP-binding protein NosF;protein_id=YP_001534530.1;transl_table=11
NC_009952.1	RefSeq	gene	3362270	3363094	.	+	.	ID=gene3235;Name=nosY;Dbxref=GeneID:5712253;gbkey=Gene;gene=nosY;locus_tag=Dshi_3197
NC_009952.1	RefSeq	CDS	3362270	3363094	.	+	0	ID=cds3188;Name=YP_001534531.1;Parent=gene3235;Note=KEGG: pde:Pden_4216 nitrous oxide maturation protein NosY;Dbxref=Genbank:YP_001534531.1,GeneID:5712253;gbkey=CDS;gene=nosY;product=nitrous oxide maturation protein NosY;protein_id=YP_001534531.1;transl_table=11
NC_009952.1	RefSeq	gene	3363091	3363660	.	+	.	ID=gene3236;Name=nosL;Dbxref=GeneID:5712254;gbkey=Gene;gene=nosL;locus_tag=Dshi_3198
NC_009952.1	RefSeq	CDS	3363091	3363660	.	+	0	ID=cds3189;Name=YP_001534532.1;Parent=gene3236;Note=PFAM: NosL family protein KEGG: pde:Pden_4215 NosL family protein;Dbxref=Genbank:YP_001534532.1,GeneID:5712254;gbkey=CDS;gene=nosL;product=nitrous oxide reductase accessory protein NosL;protein_id=YP_001534532.1;transl_table=11
NC_009952.1	RefSeq	gene	3363665	3364573	.	+	.	ID=gene3237;Name=nosX;Dbxref=GeneID:5712255;gbkey=Gene;gene=nosX;locus_tag=Dshi_3199
NC_009952.1	RefSeq	CDS	3363665	3364573	.	+	0	ID=cds3190;Name=YP_001534533.1;Parent=gene3237;Note=PFAM: ApbE family lipoprotein KEGG: pde:Pden_4214 ApbE family lipoprotein rde:RD1_1552 nosX%3B nitrous-oxide reductase protein NosX;Dbxref=Genbank:YP_001534533.1,GeneID:5712255;gbkey=CDS;gene=nosX;product=putative nitrous-oxide reductase protein NosX;protein_id=YP_001534533.1;transl_table=11
NC_009952.1	RefSeq	gene	3364993	3365862	.	+	.	ID=gene3238;Name=Dshi_3200;Dbxref=GeneID:5712256;gbkey=Gene;locus_tag=Dshi_3200
NC_009952.1	RefSeq	CDS	3364993	3365862	.	+	0	ID=cds3191;Name=YP_001534534.1;Parent=gene3238;Note=PFAM: protein of unknown function DUF861 cupin_3%3B Cupin 2 conserved barrel domain protein KEGG: jan:Jann_2601 protein of unknown function DUF861%2C cupin_3;Dbxref=Genbank:YP_001534534.1,GeneID:5712256;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534534.1;transl_table=11
NC_009952.1	RefSeq	gene	3366067	3366408	.	+	.	ID=gene3239;Name=Dshi_3201;Dbxref=GeneID:5712257;gbkey=Gene;locus_tag=Dshi_3201
NC_009952.1	RefSeq	CDS	3366067	3366408	.	+	0	ID=cds3192;Name=YP_001534535.1;Parent=gene3239;Note=PFAM: Endoribonuclease L-PSP KEGG: rde:RD1_1044 endoribonuclease L-PSP family protein%2C putative;Dbxref=Genbank:YP_001534535.1,GeneID:5712257;gbkey=CDS;product=endoribonuclease L-PSP;protein_id=YP_001534535.1;transl_table=11
NC_009952.1	RefSeq	gene	3366483	3367907	.	-	.	ID=gene3240;Name=uraA;Dbxref=GeneID:5712258;gbkey=Gene;gene=uraA;locus_tag=Dshi_3202
NC_009952.1	RefSeq	CDS	3366483	3367907	.	-	0	ID=cds3193;Name=YP_001534536.1;Parent=gene3240;Note=TIGRFAM: uracil-xanthine permease PFAM: Xanthine%2Furacil%2Fvitamin C permease KEGG: rde:RD1_4153 xanthine%2Furacil permease%2C putative%2C10xTHM%3B Uracil transporter;Dbxref=Genbank:YP_001534536.1,GeneID:5712258;gbkey=CDS;gene=uraA;product=uracil permease;protein_id=YP_001534536.1;transl_table=11
NC_009952.1	RefSeq	gene	3367958	3368452	.	-	.	ID=gene3241;Name=allA;Dbxref=GeneID:5712259;gbkey=Gene;gene=allA;locus_tag=Dshi_3203
NC_009952.1	RefSeq	CDS	3367958	3368452	.	-	0	ID=cds3194;Name=YP_001534537.1;Parent=gene3241;Note=PFAM: Ureidoglycolate hydrolase KEGG: rsh:Rsph17029_0204 ureidoglycolate hydrolase;Dbxref=Genbank:YP_001534537.1,GeneID:5712259;gbkey=CDS;gene=allA;product=ureidoglycolatehydrolase;protein_id=YP_001534537.1;transl_table=11
NC_009952.1	RefSeq	gene	3368449	3369861	.	-	.	ID=gene3242;Name=allA;Dbxref=GeneID:5712260;gbkey=Gene;gene=allA;locus_tag=Dshi_3204
NC_009952.1	RefSeq	CDS	3368449	3369861	.	-	0	ID=cds3195;Name=YP_001534538.1;Parent=gene3242;Note=PFAM: polysaccharide deacetylase%3B pfam09349%2C OHCU_decarbox%2C OHCU decarboxylase. KEGG: jan:Jann_2608 polysaccharide deacetylase;Dbxref=Genbank:YP_001534538.1,GeneID:5712260;gbkey=CDS;product=polysaccharide deacetylase;protein_id=YP_001534538.1;transl_table=11
NC_009952.1	RefSeq	gene	3370012	3370365	.	+	.	ID=gene3243;Name=Dshi_3205;Dbxref=GeneID:5712261;gbkey=Gene;locus_tag=Dshi_3205
NC_009952.1	RefSeq	CDS	3370012	3370365	.	+	0	ID=cds3196;Name=YP_001534539.1;Parent=gene3243;Note=TIGRFAM: Hydroxyisourate hydrolase PFAM: Transthyretin KEGG: rde:RD1_4150 hypothetical protein;Dbxref=Genbank:YP_001534539.1,GeneID:5712261;gbkey=CDS;product=hydroxyisourate hydrolase;protein_id=YP_001534539.1;transl_table=11
NC_009952.1	RefSeq	gene	3370362	3371345	.	-	.	ID=gene3244;Name=Dshi_3206;Dbxref=GeneID:5712262;gbkey=Gene;locus_tag=Dshi_3206
NC_009952.1	RefSeq	CDS	3370362	3371345	.	-	0	ID=cds3197;Name=YP_001534540.1;Parent=gene3244;Note=PFAM: regulatory protein LysR%3B LysR substrate-binding %3BHTH_1 pfam00126 Bacterial regulatory helix-turn-helix protein%2C lysR family KEGG: rde:RD1_4149 transcriptional regulator%2C LysR family%2C putative%3B LysR family;Dbxref=Genbank:YP_001534540.1,GeneID:5712262;gbkey=CDS;product=transcriptional regulator;protein_id=YP_001534540.1;transl_table=11
NC_009952.1	RefSeq	gene	3371394	3372626	.	+	.	ID=gene3245;Name=Dshi_3207;Dbxref=GeneID:5712263;gbkey=Gene;locus_tag=Dshi_3207
NC_009952.1	RefSeq	CDS	3371394	3372626	.	+	0	ID=cds3198;Name=YP_001534541.1;Parent=gene3245;Note=PFAM: protein of unknown function DUF989 KEGG: rde:RD1_4148 hypothetical protein;Dbxref=Genbank:YP_001534541.1,GeneID:5712263;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534541.1;transl_table=11
NC_009952.1	RefSeq	gene	3372902	3374383	.	+	.	ID=gene3246;Name=Dshi_3208;Dbxref=GeneID:5712264;gbkey=Gene;locus_tag=Dshi_3208
NC_009952.1	RefSeq	CDS	3372902	3374383	.	+	0	ID=cds3199;Name=YP_001534542.1;Parent=gene3246;Dbxref=Genbank:YP_001534542.1,GeneID:5712264;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534542.1;transl_table=11
NC_009952.1	RefSeq	gene	3374380	3375372	.	-	.	ID=gene3247;Name=Dshi_3209;Dbxref=GeneID:5712265;gbkey=Gene;locus_tag=Dshi_3209
NC_009952.1	RefSeq	CDS	3374380	3375372	.	-	0	ID=cds3200;Name=YP_001534543.1;Parent=gene3247;Dbxref=Genbank:YP_001534543.1,GeneID:5712265;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534543.1;transl_table=11
NC_009952.1	RefSeq	gene	3375531	3377120	.	+	.	ID=gene3248;Name=ymdC;Dbxref=GeneID:5712266;gbkey=Gene;gene=ymdC;locus_tag=Dshi_3210
NC_009952.1	RefSeq	CDS	3375531	3377120	.	+	0	ID=cds3201;Name=YP_001534544.1;Parent=gene3248;Note=PFAM: phospholipase D%2FTransphosphatidylase KEGG: bpe:BP3092 putative phospholipase D protein;Dbxref=Genbank:YP_001534544.1,GeneID:5712266;gbkey=CDS;gene=ymdC;product=putative phospholipase D protein;protein_id=YP_001534544.1;transl_table=11
NC_009952.1	RefSeq	gene	3377373	3377993	.	-	.	ID=gene3249;Name=Dshi_3211;Dbxref=GeneID:5712267;gbkey=Gene;locus_tag=Dshi_3211
NC_009952.1	RefSeq	CDS	3377373	3377993	.	-	0	ID=cds3202;Name=YP_001534545.1;Parent=gene3249;Note=KEGG: mpt:Mpe_A0912 putative sulfite oxidase cytochrome subunit;Dbxref=Genbank:YP_001534545.1,GeneID:5712267;gbkey=CDS;product=putative sulfite oxidase cytochrome subunit;protein_id=YP_001534545.1;transl_table=11
NC_009952.1	RefSeq	gene	3377980	3379251	.	-	.	ID=gene3250;Name=Dshi_3212;Dbxref=GeneID:5712268;gbkey=Gene;locus_tag=Dshi_3212
NC_009952.1	RefSeq	CDS	3377980	3379251	.	-	0	ID=cds3203;Name=YP_001534546.1;Parent=gene3250;Note=PFAM: oxidoreductase molybdopterin binding%3B Mo-co oxidoreductase dimerisation domain KEGG: mpt:Mpe_A0911 putative sulfite oxidase%3Bnwi:Nwi_2988 oxidoreductase%2C molybdopterin binding;Dbxref=Genbank:YP_001534546.1,GeneID:5712268;gbkey=CDS;product=molybdopterin-binding oxidoreductase;protein_id=YP_001534546.1;transl_table=11
NC_009952.1	RefSeq	gene	3379874	3381040	.	+	.	ID=gene3251;Name=Dshi_3213;Dbxref=GeneID:5712269;gbkey=Gene;locus_tag=Dshi_3213
NC_009952.1	RefSeq	CDS	3379874	3381040	.	+	0	ID=cds3204;Name=YP_001534547.1;Parent=gene3251;Note=PFAM: integrase family protein KEGG: nwi:Nwi_0831 phage integrase;Dbxref=Genbank:YP_001534547.1,GeneID:5712269;gbkey=CDS;product=integrase family protein;protein_id=YP_001534547.1;transl_table=11
NC_009952.1	RefSeq	gene	3381532	3384105	.	-	.	ID=gene3252;Name=cas3;Dbxref=GeneID:5712270;gbkey=Gene;gene=cas3;locus_tag=Dshi_3214
NC_009952.1	RefSeq	CDS	3381532	3384105	.	-	0	ID=cds3205;Name=YP_001534548.1;Parent=gene3252;Note=KEGG: rru:Rru_A0340 CRISPR-associated helicase Cas3%2C core TIGRFAM: CRISPR-associated helicase Cas3 PFAM: helicase domain protein SMART: DEAD-like helicases;Dbxref=Genbank:YP_001534548.1,GeneID:5712270;gbkey=CDS;gene=cas3;product=CRISPR-associated protein Cas3;protein_id=YP_001534548.1;transl_table=11
NC_009952.1	RefSeq	gene	3384277	3385797	.	+	.	ID=gene3253;Name=cse1;Dbxref=GeneID:5712271;gbkey=Gene;gene=cse1;locus_tag=Dshi_3215
NC_009952.1	RefSeq	CDS	3384277	3385797	.	+	0	ID=cds3206;Name=YP_001534549.1;Parent=gene3253;Note=TIGRFAM: CRISPR-associated protein%2C Cse1 family KEGG: rru:Rru_A0341 hypothetical protein%3Baeh:Mlg_0954 CRISPR-associated protein%2C CSE1 family;Dbxref=Genbank:YP_001534549.1,GeneID:5712271;gbkey=CDS;gene=cse1;product=Cse1 family CRISPR-associated protein;protein_id=YP_001534549.1;transl_table=11
NC_009952.1	RefSeq	gene	3385790	3386365	.	+	.	ID=gene3254;Name=cse1;Dbxref=GeneID:5712272;gbkey=Gene;gene=cse1;locus_tag=Dshi_3216
NC_009952.1	RefSeq	CDS	3385790	3386365	.	+	0	ID=cds3207;Name=YP_001534550.1;Parent=gene3254;Dbxref=Genbank:YP_001534550.1,GeneID:5712272;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534550.1;transl_table=11
NC_009952.1	RefSeq	gene	3386358	3387479	.	+	.	ID=gene3255;Name=cse3;Dbxref=GeneID:5712273;gbkey=Gene;gene=cse3;locus_tag=Dshi_3217
NC_009952.1	RefSeq	CDS	3386358	3387479	.	+	0	ID=cds3208;Name=YP_001534551.1;Parent=gene3255;Note=TIGRFAM: CRISPR-associated protein%2C Cse4 family PFAM: CRISPR-associated protein CT1975 KEGG: rru:Rru_A0344 CRISPR-associated CT1975 family protein%3B Cse4 family;Dbxref=Genbank:YP_001534551.1,GeneID:5712273;gbkey=CDS;gene=cse3;product=CRISPR-associated protein;protein_id=YP_001534551.1;transl_table=11
NC_009952.1	RefSeq	gene	3387476	3388162	.	+	.	ID=gene3256;Name=cas5;Dbxref=GeneID:5712274;gbkey=Gene;gene=cas5;locus_tag=Dshi_3218
NC_009952.1	RefSeq	CDS	3387476	3388162	.	+	0	ID=cds3209;Name=YP_001534552.1;Parent=gene3256;Note=TIGRFAM: CRISPR-associated protein Cas5 family%3B CRISPR-associated protein Cas5 KEGG: rru:Rru_A0345 CRISPR-associated CT1976 family protein;Dbxref=Genbank:YP_001534552.1,GeneID:5712274;gbkey=CDS;gene=cas5;product=Cas5 family CRISPR-associated protein;protein_id=YP_001534552.1;transl_table=11
NC_009952.1	RefSeq	gene	3388159	3388950	.	+	.	ID=gene3257;Name=cse2;Dbxref=GeneID:5712275;gbkey=Gene;gene=cse2;locus_tag=Dshi_3219
NC_009952.1	RefSeq	CDS	3388159	3388950	.	+	0	ID=cds3210;Name=YP_001534553.1;Parent=gene3257;Note=PFAM: CRISPR-associated protein CT1974 KEGG: rru:Rru_A0346 CRISPR-associated CT1974 family protein TIGR01907 CRISPR-associated protein%2C Cse3 family%3B Cse3 family;Dbxref=Genbank:YP_001534553.1,GeneID:5712275;gbkey=CDS;gene=cse2;product=CRISPR-associated protein;protein_id=YP_001534553.1;transl_table=11
NC_009952.1	RefSeq	gene	3388955	3389830	.	+	.	ID=gene3258;Name=cas1;Dbxref=GeneID:5712276;gbkey=Gene;gene=cas1;locus_tag=Dshi_3220
NC_009952.1	RefSeq	CDS	3388955	3389830	.	+	0	ID=cds3211;Name=YP_001534554.1;Parent=gene3258;Note=TIGRFAM: CRISPR-associated protein Cas1 KEGG: mca:MCA0930 CRISPR-associated protein Cas1;Dbxref=Genbank:YP_001534554.1,GeneID:5712276;gbkey=CDS;gene=cas1;product=CRISPR-associated protein Cas1;protein_id=YP_001534554.1;transl_table=11
NC_009952.1	RefSeq	gene	3389862	3390155	.	+	.	ID=gene3259;Name=cas2;Dbxref=GeneID:5712277;gbkey=Gene;gene=cas2;locus_tag=Dshi_3221
NC_009952.1	RefSeq	CDS	3389862	3390155	.	+	0	ID=cds3212;Name=YP_001534555.1;Parent=gene3259;Note=TIGRFAM: CRISPR-associated protein Cas2 KEGG: rru:Rru_A0348 CRISPR-associated protein%2C Cas2;Dbxref=Genbank:YP_001534555.1,GeneID:5712277;gbkey=CDS;gene=cas2;product=CRISPR-associated protein Cas2;protein_id=YP_001534555.1;transl_table=11
NC_009952.1	RefSeq	gene	3392485	3392688	.	+	.	ID=gene3260;Name=Dshi_3222;Dbxref=GeneID:5712278;gbkey=Gene;locus_tag=Dshi_3222
NC_009952.1	RefSeq	CDS	3392485	3392688	.	+	0	ID=cds3213;Name=YP_001534556.1;Parent=gene3260;Dbxref=Genbank:YP_001534556.1,GeneID:5712278;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534556.1;transl_table=11
NC_009952.1	RefSeq	gene	3392688	3393194	.	+	.	ID=gene3261;Name=Dshi_3223;Dbxref=GeneID:5712279;gbkey=Gene;locus_tag=Dshi_3223
NC_009952.1	RefSeq	CDS	3392688	3393194	.	+	0	ID=cds3214;Name=YP_001534557.1;Parent=gene3261;Note=TIGRFAM: DNA binding domain%2C excisionase family KEGG: she:Shewmr4_2783 hypothetical protein;Dbxref=Genbank:YP_001534557.1,GeneID:5712279;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534557.1;transl_table=11
NC_009952.1	RefSeq	gene	3393172	3394230	.	+	.	ID=gene3262;Name=Dshi_3224;Dbxref=GeneID:5712280;gbkey=Gene;locus_tag=Dshi_3224
NC_009952.1	RefSeq	CDS	3393172	3394230	.	+	0	ID=cds3215;Name=YP_001534558.1;Parent=gene3262;Note=PFAM: integrase family protein KEGG: mpt:Mpe_A3816 site-specific recombinase XerD-like protein;Dbxref=Genbank:YP_001534558.1,GeneID:5712280;gbkey=CDS;product=integrase family protein;protein_id=YP_001534558.1;transl_table=11
NC_009952.1	RefSeq	gene	3394234	3395673	.	-	.	ID=gene3263;Name=Dshi_3225;Dbxref=GeneID:5712281;gbkey=Gene;locus_tag=Dshi_3225
NC_009952.1	RefSeq	CDS	3394234	3395673	.	-	0	ID=cds3216;Name=YP_001534559.1;Parent=gene3263;Dbxref=Genbank:YP_001534559.1,GeneID:5712281;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534559.1;transl_table=11
NC_009952.1	RefSeq	gene	3395713	3395988	.	-	.	ID=gene3264;Name=Dshi_3226;Dbxref=GeneID:5712282;gbkey=Gene;locus_tag=Dshi_3226
NC_009952.1	RefSeq	CDS	3395713	3395988	.	-	0	ID=cds3217;Name=YP_001534560.1;Parent=gene3264;Dbxref=Genbank:YP_001534560.1,GeneID:5712282;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534560.1;transl_table=11
NC_009952.1	RefSeq	gene	3396008	3396778	.	-	.	ID=gene3265;Name=Dshi_3227;Dbxref=GeneID:5712283;gbkey=Gene;locus_tag=Dshi_3227
NC_009952.1	RefSeq	CDS	3396008	3396778	.	-	0	ID=cds3218;Name=YP_001534561.1;Parent=gene3265;Dbxref=Genbank:YP_001534561.1,GeneID:5712283;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534561.1;transl_table=11
NC_009952.1	RefSeq	gene	3396915	3396990	.	-	.	ID=gene3266;Name=Dshi_6048;Dbxref=GeneID:5712284;gbkey=Gene;locus_tag=Dshi_6048
NC_009952.1	RefSeq	tRNA	3396915	3396990	.	-	.	ID=rna47;Parent=gene3266;Dbxref=GeneID:5712284;codons=42;gbkey=tRNA;product=tRNA-Lys
NC_009952.1	RefSeq	exon	3396915	3396990	.	-	.	ID=id53;Parent=rna47;Dbxref=GeneID:5712284;codons=42;gbkey=tRNA;product=tRNA-Lys
NC_009952.1	RefSeq	gene	3397087	3397935	.	+	.	ID=gene3267;Name=dapF;Dbxref=GeneID:5712285;gbkey=Gene;gene=dapF;locus_tag=Dshi_3228
NC_009952.1	RefSeq	CDS	3397087	3397935	.	+	0	ID=cds3219;Name=YP_001534562.1;Parent=gene3267;Note=PFAM: diaminopimelate epimerase KEGG: sil:SPO0278 diaminopimelate epimerase%3B DAP epimerase;Dbxref=Genbank:YP_001534562.1,GeneID:5712285;gbkey=CDS;gene=dapF;product=diaminopimelate epimerase;protein_id=YP_001534562.1;transl_table=11
NC_009952.1	RefSeq	gene	3397932	3399182	.	+	.	ID=gene3268;Name=dapF;Dbxref=GeneID:5712286;gbkey=Gene;gene=dapF;locus_tag=Dshi_3229
NC_009952.1	RefSeq	CDS	3397932	3399182	.	+	0	ID=cds3220;Name=YP_001534563.1;Parent=gene3268;Note=KEGG: pde:Pden_0396 MiaB-like tRNA modifying enzyme TIGRFAM: RNA modification enzyme%2C MiaB family%3B MiaB-like tRNA modifying enzyme PFAM: Radical SAM domain protein%3B Protein of unknown function UPF0004 SMART: Elongator protein 3%2FMiaB%2FNifB;Dbxref=Genbank:YP_001534563.1,GeneID:5712286;gbkey=CDS;product=MiaB-like tRNA modifying enzyme;protein_id=YP_001534563.1;transl_table=11
NC_009952.1	RefSeq	gene	3399206	3399451	.	+	.	ID=gene3269;Name=Dshi_3230;Dbxref=GeneID:5712287;gbkey=Gene;locus_tag=Dshi_3230
NC_009952.1	RefSeq	CDS	3399206	3399451	.	+	0	ID=cds3221;Name=YP_001534564.1;Parent=gene3269;Dbxref=Genbank:YP_001534564.1,GeneID:5712287;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534564.1;transl_table=11
NC_009952.1	RefSeq	gene	3399663	3401321	.	+	.	ID=gene3270;Name=Dshi_3231;Dbxref=GeneID:5712288;gbkey=Gene;locus_tag=Dshi_3231
NC_009952.1	RefSeq	CDS	3399663	3401321	.	+	0	ID=cds3222;Name=YP_001534565.1;Parent=gene3270;Note=rsp:RSP_1458 putative DNA repair enzyme;Dbxref=Genbank:YP_001534565.1,GeneID:5712288;gbkey=CDS;product=putative DNA repair enzyme;protein_id=YP_001534565.1;transl_table=11
NC_009952.1	RefSeq	gene	3401706	3402056	.	+	.	ID=gene3271;Name=Dshi_3232;Dbxref=GeneID:5712289;gbkey=Gene;locus_tag=Dshi_3232
NC_009952.1	RefSeq	CDS	3401706	3402056	.	+	0	ID=cds3223;Name=YP_001534566.1;Parent=gene3271;Note=KEGG: sil:SPO3807 hypothetical protein;Dbxref=Genbank:YP_001534566.1,GeneID:5712289;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534566.1;transl_table=11
NC_009952.1	RefSeq	gene	3402060	3402899	.	-	.	ID=gene3272;Name=Dshi_3233;Dbxref=GeneID:5712290;gbkey=Gene;locus_tag=Dshi_3233
NC_009952.1	RefSeq	CDS	3402060	3402899	.	-	0	ID=cds3224;Name=YP_001534567.1;Parent=gene3272;Note=PFAM: NLP%2FP60 protein KEGG: jan:Jann_0105 NLP%2FP60;Dbxref=Genbank:YP_001534567.1,GeneID:5712290;gbkey=CDS;product=NLP%2FP60 protein;protein_id=YP_001534567.1;transl_table=11
NC_009952.1	RefSeq	gene	3402896	3404287	.	-	.	ID=gene3273;Name=pepA2;Dbxref=GeneID:5712291;gbkey=Gene;gene=pepA2;locus_tag=Dshi_3234
NC_009952.1	RefSeq	CDS	3402896	3404287	.	-	0	ID=cds3225;Name=YP_001534568.1;Parent=gene3273;Note=PFAM: peptidase M17 leucyl aminopeptidase domain protein KEGG: sil:SPO3717 cytosol aminopeptidase family protein%3B %28LAP%29 %28Leucyl aminopeptidase%29;Dbxref=Genbank:YP_001534568.1,GeneID:5712291;gbkey=CDS;gene=pepA2;product=leucine aminopeptidase;protein_id=YP_001534568.1;transl_table=11
NC_009952.1	RefSeq	gene	3404838	3405260	.	-	.	ID=gene3274;Name=Dshi_3235;Dbxref=GeneID:5712292;gbkey=Gene;locus_tag=Dshi_3235
NC_009952.1	RefSeq	CDS	3404838	3405260	.	-	0	ID=cds3226;Name=YP_001534569.1;Parent=gene3274;Dbxref=Genbank:YP_001534569.1,GeneID:5712292;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534569.1;transl_table=11
NC_009952.1	RefSeq	gene	3405407	3406057	.	+	.	ID=gene3275;Name=cynT;Dbxref=GeneID:5712293;gbkey=Gene;gene=cynT;locus_tag=Dshi_3236
NC_009952.1	RefSeq	CDS	3405407	3406057	.	+	0	ID=cds3227;Name=YP_001534570.1;Parent=gene3275;Note=PFAM: carbonic anhydrase KEGG: sil:SPO3715 carbonic anhydrase%2C putative %3B rde:RD1_0312 cynT%3B carbonate anhydratase;Dbxref=Genbank:YP_001534570.1,GeneID:5712293;gbkey=CDS;gene=cynT;product=carbonate anhydratase;protein_id=YP_001534570.1;transl_table=11
NC_009952.1	RefSeq	gene	3406143	3407117	.	+	.	ID=gene3276;Name=Dshi_3237;Dbxref=GeneID:5712294;gbkey=Gene;locus_tag=Dshi_3237
NC_009952.1	RefSeq	CDS	3406143	3407117	.	+	0	ID=cds3228;Name=YP_001534571.1;Parent=gene3276;Note=PFAM: protein of unknown function DUF897 KEGG: jan:Jann_0109 protein of unknown function DUF897;Dbxref=Genbank:YP_001534571.1,GeneID:5712294;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534571.1;transl_table=11
NC_009952.1	RefSeq	gene	3407128	3407439	.	+	.	ID=gene3277;Name=Dshi_3238;Dbxref=GeneID:5712295;gbkey=Gene;locus_tag=Dshi_3238
NC_009952.1	RefSeq	CDS	3407128	3407439	.	+	0	ID=cds3229;Name=YP_001534572.1;Parent=gene3277;Note=KEGG: jan:Jann_0110 hypothetical protein;Dbxref=Genbank:YP_001534572.1,GeneID:5712295;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534572.1;transl_table=11
NC_009952.1	RefSeq	gene	3407481	3407954	.	+	.	ID=gene3278;Name=Dshi_3239;Dbxref=GeneID:5712296;gbkey=Gene;locus_tag=Dshi_3239
NC_009952.1	RefSeq	CDS	3407481	3407954	.	+	0	ID=cds3230;Name=YP_001534573.1;Parent=gene3278;Note=KEGG: sil:SPO3714 hypothetical protein;Dbxref=Genbank:YP_001534573.1,GeneID:5712296;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534573.1;transl_table=11
NC_009952.1	RefSeq	gene	3407961	3408983	.	-	.	ID=gene3279;Name=asd;Dbxref=GeneID:5712297;gbkey=Gene;gene=asd;locus_tag=Dshi_3240
NC_009952.1	RefSeq	CDS	3407961	3408983	.	-	0	ID=cds3231;Name=YP_001534574.1;Parent=gene3279;Note=catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde;Dbxref=Genbank:YP_001534574.1,GeneID:5712297;gbkey=CDS;gene=asd;product=aspartate-semialdehyde dehydrogenase;protein_id=YP_001534574.1;transl_table=11
NC_009952.1	RefSeq	gene	3409201	3410250	.	-	.	ID=gene3280;Name=lpcC;Dbxref=GeneID:5712298;gbkey=Gene;gene=lpcC;locus_tag=Dshi_3241
NC_009952.1	RefSeq	CDS	3409201	3410250	.	-	0	ID=cds3232;Name=YP_001534575.1;Parent=gene3280;Note=PFAM: glycosyl transferase group 1 KEGG: pde:Pden_2773 glycosyl transferase%2C group 1%3Brde:RD1_3309 lpcC%3Blipopolysaccharide core biosynthesis mannosyltransferase;Dbxref=Genbank:YP_001534575.1,GeneID:5712298;gbkey=CDS;gene=lpcC;product=lipopolysaccharide core biosynthesis mannosyltransferase;protein_id=YP_001534575.1;transl_table=11
NC_009952.1	RefSeq	gene	3410436	3411863	.	+	.	ID=gene3281;Name=Dshi_3242;Dbxref=GeneID:5712299;gbkey=Gene;locus_tag=Dshi_3242
NC_009952.1	RefSeq	CDS	3410436	3411863	.	+	0	ID=cds3233;Name=YP_001534576.1;Parent=gene3281;Note=PFAM: protein of unknown function DUF404%3B protein of unknown function DUF407 KEGG: sit:TM1040_2114 protein of unknown function DUF404%3B DUF407;Dbxref=Genbank:YP_001534576.1,GeneID:5712299;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534576.1;transl_table=11
NC_009952.1	RefSeq	gene	3411868	3412809	.	+	.	ID=gene3282;Name=Dshi_3243;Dbxref=GeneID:5712300;gbkey=Gene;locus_tag=Dshi_3243
NC_009952.1	RefSeq	CDS	3411868	3412809	.	+	0	ID=cds3234;Name=YP_001534577.1;Parent=gene3282;Note=PFAM: protein of unknown function DUF403 KEGG: jan:Jann_2677 protein of unknown function DUF403;Dbxref=Genbank:YP_001534577.1,GeneID:5712300;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534577.1;transl_table=11
NC_009952.1	RefSeq	gene	3412814	3413650	.	+	.	ID=gene3283;Name=Dshi_3244;Dbxref=GeneID:5712301;gbkey=Gene;locus_tag=Dshi_3244
NC_009952.1	RefSeq	CDS	3412814	3413650	.	+	0	ID=cds3235;Name=YP_001534578.1;Parent=gene3283;Note=PFAM: transglutaminase domain protein%3B transglutaminase domain protein KEGG: hne:HNE_2679 transglutaminase family protein;Dbxref=Genbank:YP_001534578.1,GeneID:5712301;gbkey=CDS;product=putative transglutaminase-like superfamily protein;protein_id=YP_001534578.1;transl_table=11
NC_009952.1	RefSeq	gene	3413789	3414574	.	+	.	ID=gene3284;Name=Dshi_3245;Dbxref=GeneID:5712302;gbkey=Gene;locus_tag=Dshi_3245
NC_009952.1	RefSeq	CDS	3413789	3414574	.	+	0	ID=cds3236;Name=YP_001534579.1;Parent=gene3284;Note=PFAM: 20S proteasome A and B subunits KEGG: rde:RD1_4009 proteasome-type protease%2C putative;Dbxref=Genbank:YP_001534579.1,GeneID:5712302;gbkey=CDS;product=putative proteasome-type protease;protein_id=YP_001534579.1;transl_table=11
NC_009952.1	RefSeq	gene	3414677	3416029	.	-	.	ID=gene3285;Name=fliI;Dbxref=GeneID:5712303;gbkey=Gene;gene=fliI;locus_tag=Dshi_3246
NC_009952.1	RefSeq	CDS	3414677	3416029	.	-	0	ID=cds3237;Name=YP_001534580.1;Parent=gene3285;Note=KEGG: rsq:Rsph17025_2599 ATPase%2C FliI%2FYscN family TIGRFAM: ATPase%2C FliI%2FYscN family PFAM: H%2Btransporting two-sector ATPase alpha%2Fbeta subunit central region;Dbxref=Genbank:YP_001534580.1,GeneID:5712303;gbkey=CDS;gene=fliI;product=flagellum-specific ATP synthase;protein_id=YP_001534580.1;transl_table=11
NC_009952.1	RefSeq	gene	3416124	3416504	.	+	.	ID=gene3286;Name=flgB;Dbxref=GeneID:5712304;gbkey=Gene;gene=flgB;locus_tag=Dshi_3247
NC_009952.1	RefSeq	CDS	3416124	3416504	.	+	0	ID=cds3238;Name=YP_001534581.1;Parent=gene3286;Note=with FlgF and C makes up the proximal portion of the flagellar basal body rod;Dbxref=Genbank:YP_001534581.1,GeneID:5712304;gbkey=CDS;gene=flgB;product=flagellar basal body rod protein FlgB;protein_id=YP_001534581.1;transl_table=11
NC_009952.1	RefSeq	gene	3416511	3416903	.	+	.	ID=gene3287;Name=flgC;Dbxref=GeneID:5712305;gbkey=Gene;gene=flgC;locus_tag=Dshi_3248
NC_009952.1	RefSeq	CDS	3416511	3416903	.	+	0	ID=cds3239;Name=YP_001534582.1;Parent=gene3287;Note=with FlgF and B makes up the proximal portion of the flagellar basal body rod;Dbxref=Genbank:YP_001534582.1,GeneID:5712305;gbkey=CDS;gene=flgC;product=flagellar basal body rod protein FlgC;protein_id=YP_001534582.1;transl_table=11
NC_009952.1	RefSeq	gene	3416918	3417196	.	+	.	ID=gene3288;Name=fliE;Dbxref=GeneID:5712306;gbkey=Gene;gene=fliE;locus_tag=Dshi_3249
NC_009952.1	RefSeq	CDS	3416918	3417196	.	+	0	ID=cds3240;Name=YP_001534583.1;Parent=gene3288;Note=forms a junction between the M-ring and FlgB during flagella biosynthesis%3B Bradyrhizobium has one thick flagellum and several thin flagella%3B the protein in this cluster is associated with the thin flagella;Dbxref=Genbank:YP_001534583.1,GeneID:5712306;gbkey=CDS;gene=fliE;product=flagellar hook-basal body protein FliE;protein_id=YP_001534583.1;transl_table=11
NC_009952.1	RefSeq	gene	3417196	3417462	.	+	.	ID=gene3289;Name=fliQ;Dbxref=GeneID:5712307;gbkey=Gene;gene=fliQ;locus_tag=Dshi_3250
NC_009952.1	RefSeq	CDS	3417196	3417462	.	+	0	ID=cds3241;Name=YP_001534584.1;Parent=gene3289;Note=Swissprot: P74931 Flagellar biosynthetic protein fliQ PFAM: export protein FliQ family 3 KEGG: pde:Pden_2113 export protein FliQ%2C family 3;Dbxref=Genbank:YP_001534584.1,GeneID:5712307;gbkey=CDS;gene=fliQ;product=flagellar biosynthetic protein FliQ;protein_id=YP_001534584.1;transl_table=11
NC_009952.1	RefSeq	gene	3417469	3418185	.	+	.	ID=gene3290;Name=flgF;Dbxref=GeneID:5712308;gbkey=Gene;gene=flgF;locus_tag=Dshi_3251
NC_009952.1	RefSeq	CDS	3417469	3418185	.	+	0	ID=cds3242;Name=YP_001534585.1;Parent=gene3290;Note=FlgF%2C with FlgB and C%2C makes up the proximal portion of the flagellar basal body rod%3B Rhodobacter sphaeroides has 2 copies of this and other flagella genes;Dbxref=Genbank:YP_001534585.1,GeneID:5712308;gbkey=CDS;gene=flgF;product=flagellar basal body rod protein FlgF;protein_id=YP_001534585.1;transl_table=11
NC_009952.1	RefSeq	gene	3418207	3418992	.	+	.	ID=gene3291;Name=flgG;Dbxref=GeneID:5712309;gbkey=Gene;gene=flgG;locus_tag=Dshi_3252
NC_009952.1	RefSeq	CDS	3418207	3418992	.	+	0	ID=cds3243;Name=YP_001534586.1;Parent=gene3291;Note=makes up the distal portion of the flagellar basal body rod%3B Bradyrhizobium has one thick flagellum and several thin flagella%3B the Bradyrhizobium protein in this cluster is associated with the thick flagella;Dbxref=Genbank:YP_001534586.1,GeneID:5712309;gbkey=CDS;gene=flgG;product=flagellar basal body rod protein FlgG;protein_id=YP_001534586.1;transl_table=11
NC_009952.1	RefSeq	gene	3418989	3419414	.	+	.	ID=gene3292;Name=flgA;Dbxref=GeneID:5712310;gbkey=Gene;gene=flgA;locus_tag=Dshi_3253
NC_009952.1	RefSeq	CDS	3418989	3419414	.	+	0	ID=cds3244;Name=YP_001534587.1;Parent=gene3292;Note=required for the assembly of the flagellar basal body P-ring;Dbxref=Genbank:YP_001534587.1,GeneID:5712310;gbkey=CDS;gene=flgA;product=flagellar basal body P-ring biosynthesis protein FlgA;protein_id=YP_001534587.1;transl_table=11
NC_009952.1	RefSeq	gene	3419427	3420155	.	+	.	ID=gene3293;Name=flgH;Dbxref=GeneID:5712311;gbkey=Gene;gene=flgH;locus_tag=Dshi_3254
NC_009952.1	RefSeq	CDS	3419427	3420155	.	+	0	ID=cds3245;Name=YP_001534588.1;Parent=gene3293;Note=part of the flagellar basal body which consists of four rings L%2CP%2C S and M mounted on a central rod;Dbxref=Genbank:YP_001534588.1,GeneID:5712311;gbkey=CDS;gene=flgH;product=flagellar basal body L-ring protein;protein_id=YP_001534588.1;transl_table=11
NC_009952.1	RefSeq	gene	3420164	3420655	.	+	.	ID=gene3294;Name=fliL1;Dbxref=GeneID:5712312;gbkey=Gene;gene=fliL1;locus_tag=Dshi_3255
NC_009952.1	RefSeq	CDS	3420164	3420655	.	+	0	ID=cds3246;Name=YP_001534589.1;Parent=gene3294;Note=PFAM: flagellar basal body-associated protein FliL;Dbxref=Genbank:YP_001534589.1,GeneID:5712312;gbkey=CDS;gene=fliL1;product=flagellar basal body-associated protein FliL;protein_id=YP_001534589.1;transl_table=11
NC_009952.1	RefSeq	gene	3421032	3422120	.	-	.	ID=gene3295;Name=flhB;Dbxref=GeneID:5712313;gbkey=Gene;gene=flhB;locus_tag=Dshi_3256
NC_009952.1	RefSeq	CDS	3421032	3422120	.	-	0	ID=cds3247;Name=YP_001534590.1;Parent=gene3295;Note=membrane protein responsible for substrate specificity switching from rod%2Fhook-type export to filament-type export;Dbxref=Genbank:YP_001534590.1,GeneID:5712313;gbkey=CDS;gene=flhB;product=flagellar biosynthesis protein FlhB;protein_id=YP_001534590.1;transl_table=11
NC_009952.1	RefSeq	gene	3422117	3422890	.	-	.	ID=gene3296;Name=fliR;Dbxref=GeneID:5712314;gbkey=Gene;gene=fliR;locus_tag=Dshi_3257
NC_009952.1	RefSeq	CDS	3422117	3422890	.	-	0	ID=cds3248;Name=YP_001534591.1;Parent=gene3296;Note=PFAM: type III secretion system inner membrane R protein KEGG: jan:Jann_4187 flagellar biosynthetic protein FliR;Dbxref=Genbank:YP_001534591.1,GeneID:5712314;gbkey=CDS;gene=fliR;product=flagellar biosynthesis protein FliR;protein_id=YP_001534591.1;transl_table=11
NC_009952.1	RefSeq	gene	3422887	3424983	.	-	.	ID=gene3297;Name=flhA;Dbxref=GeneID:5712315;gbkey=Gene;gene=flhA;locus_tag=Dshi_3258
NC_009952.1	RefSeq	CDS	3422887	3424983	.	-	0	ID=cds3249;Name=YP_001534592.1;Parent=gene3297;Note=membrane protein involved in the flagellar export apparatus;Dbxref=Genbank:YP_001534592.1,GeneID:5712315;gbkey=CDS;gene=flhA;product=flagellar biosynthesis protein FlhA;protein_id=YP_001534592.1;transl_table=11
NC_009952.1	RefSeq	gene	3424994	3426859	.	-	.	ID=gene3298;Name=Dshi_3259;Dbxref=GeneID:5712316;gbkey=Gene;locus_tag=Dshi_3259
NC_009952.1	RefSeq	CDS	3424994	3426859	.	-	0	ID=cds3250;Name=YP_001534593.1;Parent=gene3298;Note=KEGG: rsh:Rsph17029_2977 hypothetical protein;Dbxref=Genbank:YP_001534593.1,GeneID:5712316;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534593.1;transl_table=11
NC_009952.1	RefSeq	gene	3426856	3427725	.	-	.	ID=gene3299;Name=motA;Dbxref=GeneID:5712317;gbkey=Gene;gene=motA;locus_tag=Dshi_3260
NC_009952.1	RefSeq	CDS	3426856	3427725	.	-	0	ID=cds3251;Name=YP_001534594.1;Parent=gene3299;Note=With MotB forms the ion channels that couple flagellar rotation to proton%2Fsodium motive force across the membrane and forms the stator elements of the rotary flagellar machine;Dbxref=Genbank:YP_001534594.1,GeneID:5712317;gbkey=CDS;gene=motA;product=flagellar motor protein MotA;protein_id=YP_001534594.1;transl_table=11
NC_009952.1	RefSeq	gene	3427775	3428380	.	-	.	ID=gene3300;Name=Dshi_3261;Dbxref=GeneID:5712318;gbkey=Gene;locus_tag=Dshi_3261
NC_009952.1	RefSeq	CDS	3427775	3428380	.	-	0	ID=cds3252;Name=YP_001534595.1;Parent=gene3300;Note=KEGG: rsh:Rsph17029_2975 hypothetical protein;Dbxref=Genbank:YP_001534595.1,GeneID:5712318;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534595.1;transl_table=11
NC_009952.1	RefSeq	gene	3428380	3428760	.	-	.	ID=gene3301;Name=Dshi_3262;Dbxref=GeneID:5712319;gbkey=Gene;locus_tag=Dshi_3262
NC_009952.1	RefSeq	CDS	3428380	3428760	.	-	0	ID=cds3253;Name=YP_001534596.1;Parent=gene3301;Note=KEGG: rde:RD1_0271 hypothetical protein;Dbxref=Genbank:YP_001534596.1,GeneID:5712319;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534596.1;transl_table=11
NC_009952.1	RefSeq	gene	3428769	3429269	.	-	.	ID=gene3302;Name=fliL2;Dbxref=GeneID:5712320;gbkey=Gene;gene=fliL2;locus_tag=Dshi_3263
NC_009952.1	RefSeq	CDS	3428769	3429269	.	-	0	ID=cds3254;Name=YP_001534597.1;Parent=gene3302;Note=PFAM: flagellar basal body-associated protein FliL KEGG: rsh:Rsph17029_2973 flagellar basal body-associated protein FliL;Dbxref=Genbank:YP_001534597.1,GeneID:5712320;gbkey=CDS;gene=fliL2;product=flagellar basal body-associated protein FliL;protein_id=YP_001534597.1;transl_table=11
NC_009952.1	RefSeq	gene	3429384	3431060	.	+	.	ID=gene3303;Name=fliF;Dbxref=GeneID:5712321;gbkey=Gene;gene=fliF;locus_tag=Dshi_3264
NC_009952.1	RefSeq	CDS	3429384	3431060	.	+	0	ID=cds3255;Name=YP_001534598.1;Parent=gene3303;Note=the MS-ring anchors the flagellum to the cytoplasmic membrane%3B part of the flagellar basal body which consists of four rings L%2C P%2C S%2C and M mounted on a central rod;Dbxref=Genbank:YP_001534598.1,GeneID:5712321;gbkey=CDS;gene=fliF;product=flagellar MS-ring protein;protein_id=YP_001534598.1;transl_table=11
NC_009952.1	RefSeq	gene	3431060	3431665	.	+	.	ID=gene3304;Name=fliH;Dbxref=GeneID:5712322;gbkey=Gene;gene=fliH;locus_tag=Dshi_3265
NC_009952.1	RefSeq	CDS	3431060	3431665	.	+	0	ID=cds3256;Name=YP_001534599.1;Parent=gene3304;Note=COG: FliH%2C Flagellar biosynthesis%2Ftype III secretory pathway protein PRK: fliH%2C flagellar assembly protein H KEGG: rsh:Rsph17029_2971 putative flagellar biosynthesis%2Ftype III secretory pathway protein;Dbxref=Genbank:YP_001534599.1,GeneID:5712322;gbkey=CDS;gene=fliH;product=flagellar biosynthesis protein FliH;protein_id=YP_001534599.1;transl_table=11
NC_009952.1	RefSeq	gene	3431658	3431927	.	+	.	ID=gene3305;Name=fliN;Dbxref=GeneID:5712323;gbkey=Gene;gene=fliN;locus_tag=Dshi_3266
NC_009952.1	RefSeq	CDS	3431658	3431927	.	+	0	ID=cds3257;Name=YP_001534600.1;Parent=gene3305;Note=Swissprot: Q03593 Flagellar motor switch protein fliN COG: Flagellar motor switch%2Ftype III secretory pathway protein;Dbxref=Genbank:YP_001534600.1,GeneID:5712323;gbkey=CDS;gene=fliN;product=flagellar motor switch protein FliN;protein_id=YP_001534600.1;transl_table=11
NC_009952.1	RefSeq	gene	3431930	3432658	.	+	.	ID=gene3306;Name=fliP;Dbxref=GeneID:5712324;gbkey=Gene;gene=fliP;locus_tag=Dshi_3267
NC_009952.1	RefSeq	CDS	3431930	3432658	.	+	0	ID=cds3258;Name=YP_001534601.1;Parent=gene3306;Note=FliP%2C with proteins FliQ and FliR%2C forms the core of the central channel in the flagella export apparatus;Dbxref=Genbank:YP_001534601.1,GeneID:5712324;gbkey=CDS;gene=fliP;product=flagellar biosynthesis protein FliP;protein_id=YP_001534601.1;transl_table=11
NC_009952.1	RefSeq	gene	3432733	3433962	.	+	.	ID=gene3307;Name=Dshi_3268;Dbxref=GeneID:5712325;gbkey=Gene;locus_tag=Dshi_3268
NC_009952.1	RefSeq	CDS	3432733	3433962	.	+	0	ID=cds3259;Name=YP_001534602.1;Parent=gene3307;Note=PFAM: coenzyme F420 hydrogenase%2Fdehydrogenase beta subunit domain protein KEGG: rpe:RPE_1300 coenzyme F420 hydrogenase%2Fdehydrogenase beta subunit domain protein%3B beta subunit;Dbxref=Genbank:YP_001534602.1,GeneID:5712325;gbkey=CDS;product=putative coenzyme F420 hydrogenase;protein_id=YP_001534602.1;transl_table=11
NC_009952.1	RefSeq	gene	3433959	3435065	.	-	.	ID=gene3308;Name=Dshi_3269;Dbxref=GeneID:5712326;gbkey=Gene;locus_tag=Dshi_3269
NC_009952.1	RefSeq	CDS	3433959	3435065	.	-	0	ID=cds3260;Name=YP_001534603.1;Parent=gene3308;Note=PFAM: L-carnitine dehydratase%2Fbile acid-inducible protein F KEGG: sit:TM1040_0389 L-carnitine dehydratase%2Fbile acid-inducible protein F;Dbxref=Genbank:YP_001534603.1,GeneID:5712326;gbkey=CDS;product=L-carnitine dehydratase%2Fbile acid-inducible protein F;protein_id=YP_001534603.1;transl_table=11
NC_009952.1	RefSeq	gene	3435120	3435839	.	-	.	ID=gene3309;Name=Dshi_3270;Dbxref=GeneID:5712327;gbkey=Gene;locus_tag=Dshi_3270
NC_009952.1	RefSeq	CDS	3435120	3435839	.	-	0	ID=cds3261;Name=YP_001534604.1;Parent=gene3309;Dbxref=Genbank:YP_001534604.1,GeneID:5712327;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534604.1;transl_table=11
NC_009952.1	RefSeq	gene	3435991	3437064	.	-	.	ID=gene3310;Name=Dshi_3271;Dbxref=GeneID:5712328;gbkey=Gene;locus_tag=Dshi_3271
NC_009952.1	RefSeq	CDS	3435991	3437064	.	-	0	ID=cds3262;Name=YP_001534605.1;Parent=gene3310;Note=PFAM: protein of unknown function DUF59 KEGG: rde:RD1_2906 hypothetical protein;Dbxref=Genbank:YP_001534605.1,GeneID:5712328;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534605.1;transl_table=11
NC_009952.1	RefSeq	gene	3437061	3437258	.	-	.	ID=gene3311;Name=Dshi_3272;Dbxref=GeneID:5712329;gbkey=Gene;locus_tag=Dshi_3272
NC_009952.1	RefSeq	CDS	3437061	3437258	.	-	0	ID=cds3263;Name=YP_001534606.1;Parent=gene3311;Note=KEGG: rde:RD1_2905 hypothetical protein;Dbxref=Genbank:YP_001534606.1,GeneID:5712329;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534606.1;transl_table=11
NC_009952.1	RefSeq	gene	3437544	3438491	.	+	.	ID=gene3312;Name=Dshi_3273;Dbxref=GeneID:5712330;gbkey=Gene;locus_tag=Dshi_3273
NC_009952.1	RefSeq	CDS	3437544	3438491	.	+	0	ID=cds3264;Name=YP_001534607.1;Parent=gene3312;Dbxref=Genbank:YP_001534607.1,GeneID:5712330;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534607.1;transl_table=11
NC_009952.1	RefSeq	gene	3438585	3439571	.	+	.	ID=gene3313;Name=Dshi_3274;Dbxref=GeneID:5712331;gbkey=Gene;locus_tag=Dshi_3274
NC_009952.1	RefSeq	CDS	3438585	3439571	.	+	0	ID=cds3265;Name=YP_001534608.1;Parent=gene3313;Dbxref=Genbank:YP_001534608.1,GeneID:5712331;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534608.1;transl_table=11
NC_009952.1	RefSeq	gene	3439739	3440842	.	-	.	ID=gene3314;Name=aroC;Dbxref=GeneID:5712332;gbkey=Gene;gene=aroC;locus_tag=Dshi_3275
NC_009952.1	RefSeq	CDS	3439739	3440842	.	-	0	ID=cds3266;Name=YP_001534609.1;Parent=gene3314;Note=catalyzes the formation of chorismate from 5-O-%281-carboxyvinyl%29-3-phosphoshikimate in aromatic amino acid biosynthesis;Dbxref=Genbank:YP_001534609.1,GeneID:5712332;gbkey=CDS;gene=aroC;product=chorismate synthase;protein_id=YP_001534609.1;transl_table=11
NC_009952.1	RefSeq	gene	3441060	3441854	.	-	.	ID=gene3315;Name=petC;Dbxref=GeneID:5712333;gbkey=Gene;gene=petC;locus_tag=Dshi_3276
NC_009952.1	RefSeq	CDS	3441060	3441854	.	-	0	ID=cds3267;Name=YP_001534610.1;Parent=gene3315;Note=PFAM: cytochrome c1 KEGG: rde:RD1_0565 cytochrome c1;Dbxref=Genbank:YP_001534610.1,GeneID:5712333;gbkey=CDS;gene=petC;product=cytochrome c1;protein_id=YP_001534610.1;transl_table=11
NC_009952.1	RefSeq	gene	3441879	3443228	.	-	.	ID=gene3316;Name=petB;Dbxref=GeneID:5712334;gbkey=Gene;gene=petB;locus_tag=Dshi_3277
NC_009952.1	RefSeq	CDS	3441879	3443228	.	-	0	ID=cds3268;Name=YP_001534611.1;Parent=gene3316;Note=PFAM: Cytochrome b%2Fb6 domain KEGG: jan:Jann_0326 cytochrome b%2Fb6-like;Dbxref=Genbank:YP_001534611.1,GeneID:5712334;gbkey=CDS;gene=petB;product=cytochrome b;protein_id=YP_001534611.1;transl_table=11
NC_009952.1	RefSeq	gene	3443243	3443800	.	-	.	ID=gene3317;Name=petA;Dbxref=GeneID:5712335;gbkey=Gene;gene=petA;locus_tag=Dshi_3278
NC_009952.1	RefSeq	CDS	3443243	3443800	.	-	0	ID=cds3269;Name=YP_001534612.1;Parent=gene3317;Note=TIGRFAM: ubiquinol-cytochrome c reductase%2C iron-sulfur subunit PFAM: Rieske %5B2Fe-2S%5D domain protein KEGG: sit:TM1040_2814 ubiquinol-cytochrome c reductase%2C iron-sulfur subunit%3B iron-sulfur subunit;Dbxref=Genbank:YP_001534612.1,GeneID:5712335;gbkey=CDS;gene=petA;product=ubiquinol-cytochrome c reductase;protein_id=YP_001534612.1;transl_table=11
NC_009952.1	RefSeq	gene	3444069	3444680	.	-	.	ID=gene3318;Name=Dshi_3279;Dbxref=GeneID:5712336;gbkey=Gene;locus_tag=Dshi_3279
NC_009952.1	RefSeq	CDS	3444069	3444680	.	-	0	ID=cds3270;Name=YP_001534613.1;Parent=gene3318;Note=PFAM: Glutathione S-transferase domain KEGG: rsp:RSP_1397 glutathione S-transferase;Dbxref=Genbank:YP_001534613.1,GeneID:5712336;gbkey=CDS;product=putative glutathione S-transferase family protein;protein_id=YP_001534613.1;transl_table=11
NC_009952.1	RefSeq	gene	3444680	3444967	.	-	.	ID=gene3319;Name=Dshi_3280;Dbxref=GeneID:5712337;gbkey=Gene;locus_tag=Dshi_3280
NC_009952.1	RefSeq	CDS	3444680	3444967	.	-	0	ID=cds3271;Name=YP_001534614.1;Parent=gene3319;Note=KEGG: rsq:Rsph17025_2805 hypothetical protein;Dbxref=Genbank:YP_001534614.1,GeneID:5712337;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534614.1;transl_table=11
NC_009952.1	RefSeq	gene	3445107	3448478	.	-	.	ID=gene3320;Name=Dshi_3281;Dbxref=GeneID:5712338;gbkey=Gene;locus_tag=Dshi_3281
NC_009952.1	RefSeq	CDS	3445107	3448478	.	-	0	ID=cds3272;Name=YP_001534615.1;Parent=gene3320;Note=PFAM: nucleic acid binding OB-fold tRNA%2Fhelicase-type%3B Endonuclease%2Fexonuclease%2Fphosphatase KEGG: syn:sll0656 extracellular nuclease;Dbxref=Genbank:YP_001534615.1,GeneID:5712338;gbkey=CDS;product=putative endonuclease%2Fexonuclease%2Fphosphatase;protein_id=YP_001534615.1;transl_table=11
NC_009952.1	RefSeq	gene	3448790	3449674	.	+	.	ID=gene3321;Name=fdhD;Dbxref=GeneID:5712339;gbkey=Gene;gene=fdhD;locus_tag=Dshi_3282
NC_009952.1	RefSeq	CDS	3448790	3449674	.	+	0	ID=cds3273;Name=YP_001534616.1;Parent=gene3321;Note=TIGR00129 formate dehydrogenase family accessory protein FdhD PFAM: formate dehydrogenase subunit FdhD KEGG: sil:SPO0306 formate dehydrogenase accessory protein FdhD;Dbxref=Genbank:YP_001534616.1,GeneID:5712339;gbkey=CDS;gene=fdhD;product=putative formate dehydrogenase accessory protein FdhD;protein_id=YP_001534616.1;transl_table=11
NC_009952.1	RefSeq	gene	3449671	3450306	.	+	.	ID=gene3322;Name=mobA;Dbxref=GeneID:5712340;gbkey=Gene;gene=mobA;locus_tag=Dshi_3283
NC_009952.1	RefSeq	CDS	3449671	3450306	.	+	0	ID=cds3274;Name=YP_001534617.1;Parent=gene3322;Note=in Escherichia coli MobA links a guanosine 5%27-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis;Dbxref=Genbank:YP_001534617.1,GeneID:5712340;gbkey=CDS;gene=mobA;product=molybdopterin-guanine dinucleotide biosynthesis protein MobA;protein_id=YP_001534617.1;transl_table=11
NC_009952.1	RefSeq	gene	3450303	3452075	.	+	.	ID=gene3323;Name=moeA3;Dbxref=GeneID:5712341;gbkey=Gene;gene=moeA3;locus_tag=Dshi_3284
NC_009952.1	RefSeq	CDS	3450303	3452075	.	+	0	ID=cds3275;Name=YP_001534618.1;Parent=gene3323;Note=TIGRFAM: molybdenum cofactor synthesis domain%3B molybdopterin-guanine dinucleotide biosynthesis protein B PFAM: molybdopterin binding domain%3B molybdopterin-guanine dinucleotide biosynthesis MobB region%3B MoeA domain protein domain I and II%3B MoeA domain protein domain IV KEGG: sil:SPO0310 molybdopterin biosynthesis protein MoeA rde:RD1_3407 moeA%3B molybdopterin biosynthesis protein%2C putative;Dbxref=Genbank:YP_001534618.1,GeneID:5712341;gbkey=CDS;gene=moeA3;product=putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB%2FMoeA;protein_id=YP_001534618.1;transl_table=11
NC_009952.1	RefSeq	gene	3452072	3452488	.	-	.	ID=gene3324;Name=trx;Dbxref=GeneID:5712342;gbkey=Gene;gene=trx;locus_tag=Dshi_3285
NC_009952.1	RefSeq	CDS	3452072	3452488	.	-	0	ID=cds3276;Name=YP_001534619.1;Parent=gene3324;Note=PFAM: Thioredoxin domain KEGG: rde:RD1_0213 thioredoxin%2C putative;Dbxref=Genbank:YP_001534619.1,GeneID:5712342;gbkey=CDS;gene=trx;product=putative thioredoxin;protein_id=YP_001534619.1;transl_table=11
NC_009952.1	RefSeq	gene	3452504	3453217	.	-	.	ID=gene3325;Name=ccdA;Dbxref=GeneID:5712343;gbkey=Gene;gene=ccdA;locus_tag=Dshi_3286
NC_009952.1	RefSeq	CDS	3452504	3453217	.	-	0	ID=cds3277;Name=YP_001534620.1;Parent=gene3325;Note=PFAM: cytochrome c biogenesis protein transmembrane region KEGG: rde:RD1_0214 cytochrome c biogenesis protein;Dbxref=Genbank:YP_001534620.1,GeneID:5712343;gbkey=CDS;gene=ccdA;product=cytochrome c biogenesis protein;protein_id=YP_001534620.1;transl_table=11
NC_009952.1	RefSeq	gene	3453276	3454142	.	-	.	ID=gene3326;Name=Dshi_3287;Dbxref=GeneID:5712344;gbkey=Gene;locus_tag=Dshi_3287
NC_009952.1	RefSeq	CDS	3453276	3454142	.	-	0	ID=cds3278;Name=YP_001534621.1;Parent=gene3326;Note=PFAM: protein of unknown function DUF6 transmembrane KEGG: sit:TM1040_2802 protein of unknown function DUF6%2C transmembrane %3B rde:RD1_0601 hypothetical protein %3B TMH%3B 2x DUF6;Dbxref=Genbank:YP_001534621.1,GeneID:5712344;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534621.1;transl_table=11
NC_009952.1	RefSeq	gene	3454254	3454544	.	-	.	ID=gene3327;Name=hup;Dbxref=GeneID:5712345;gbkey=Gene;gene=hup;locus_tag=Dshi_3288
NC_009952.1	RefSeq	CDS	3454254	3454544	.	-	0	ID=cds3279;Name=YP_001534622.1;Parent=gene3327;Note=PFAM: histone family protein DNA-binding protein KEGG: rde:RD1_0603 DNA-binding protein HU;Dbxref=Genbank:YP_001534622.1,GeneID:5712345;gbkey=CDS;gene=hup;product=DNA-binding protein HU;protein_id=YP_001534622.1;transl_table=11
NC_009952.1	RefSeq	gene	3455298	3456767	.	-	.	ID=gene3328;Name=amn;Dbxref=GeneID:5712346;gbkey=Gene;gene=amn;locus_tag=Dshi_3289
NC_009952.1	RefSeq	CDS	3455298	3456767	.	-	0	ID=cds3280;Name=YP_001534623.1;Parent=gene3328;Note=Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile;Dbxref=Genbank:YP_001534623.1,GeneID:5712346;gbkey=CDS;gene=amn;product=AMP nucleosidase;protein_id=YP_001534623.1;transl_table=11
NC_009952.1	RefSeq	gene	3456894	3457313	.	+	.	ID=gene3329;Name=Dshi_3290;Dbxref=GeneID:5712347;gbkey=Gene;locus_tag=Dshi_3290
NC_009952.1	RefSeq	CDS	3456894	3457313	.	+	0	ID=cds3281;Name=YP_001534624.1;Parent=gene3329;Note=KEGG: sil:SPO3747 hypothetical protein;Dbxref=Genbank:YP_001534624.1,GeneID:5712347;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534624.1;transl_table=11
NC_009952.1	RefSeq	gene	3457352	3458224	.	+	.	ID=gene3330;Name=Dshi_3291;Dbxref=GeneID:5712348;gbkey=Gene;locus_tag=Dshi_3291
NC_009952.1	RefSeq	CDS	3457352	3458224	.	+	0	ID=cds3282;Name=YP_001534625.1;Parent=gene3330;Note=KEGG: jan:Jann_0273 NAD-dependent epimerase%2Fdehydratase rde:RD1_0614 hypothetical protein;Dbxref=Genbank:YP_001534625.1,GeneID:5712348;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534625.1;transl_table=11
NC_009952.1	RefSeq	gene	3458254	3459135	.	-	.	ID=gene3331;Name=Dshi_3292;Dbxref=GeneID:5712349;gbkey=Gene;locus_tag=Dshi_3292
NC_009952.1	RefSeq	CDS	3458254	3459135	.	-	0	ID=cds3283;Name=YP_001534626.1;Parent=gene3331;Dbxref=Genbank:YP_001534626.1,GeneID:5712349;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534626.1;transl_table=11
NC_009952.1	RefSeq	gene	3459141	3459959	.	-	.	ID=gene3332;Name=Dshi_3293;Dbxref=GeneID:5712350;gbkey=Gene;locus_tag=Dshi_3293
NC_009952.1	RefSeq	CDS	3459141	3459959	.	-	0	ID=cds3284;Name=YP_001534627.1;Parent=gene3332;Dbxref=Genbank:YP_001534627.1,GeneID:5712350;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534627.1;transl_table=11
NC_009952.1	RefSeq	gene	3459972	3461903	.	-	.	ID=gene3333;Name=dxs1;Dbxref=GeneID:5712351;gbkey=Gene;gene=dxs1;locus_tag=Dshi_3294
NC_009952.1	RefSeq	CDS	3459972	3461903	.	-	0	ID=cds3285;Name=YP_001534628.1;Parent=gene3333;Note=catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate;Dbxref=Genbank:YP_001534628.1,GeneID:5712351;gbkey=CDS;gene=dxs1;product=1-deoxy-D-xylulose-5-phosphate synthase;protein_id=YP_001534628.1;transl_table=11
NC_009952.1	RefSeq	gene	3461924	3462799	.	-	.	ID=gene3334;Name=ispA;Dbxref=GeneID:5712352;gbkey=Gene;gene=ispA;locus_tag=Dshi_3295
NC_009952.1	RefSeq	CDS	3461924	3462799	.	-	0	ID=cds3286;Name=YP_001534629.1;Parent=gene3334;Note=PFAM: Polyprenyl synthetase KEGG: rde:RD1_0549 ispA%3B geranyltranstransferase%3B FPP synthase%3B Farnesyl-diphosphate synthase;Dbxref=Genbank:YP_001534629.1,GeneID:5712352;gbkey=CDS;gene=ispA;product=geranyltranstransferase;protein_id=YP_001534629.1;transl_table=11
NC_009952.1	RefSeq	gene	3462803	3463045	.	-	.	ID=gene3335;Name=xseB;Dbxref=GeneID:5712353;gbkey=Gene;gene=xseB;locus_tag=Dshi_3296
NC_009952.1	RefSeq	CDS	3462803	3463045	.	-	0	ID=cds3287;Name=YP_001534630.1;Parent=gene3335;Note=PFAM: histone deacetylase superfamily KEGG: rsp:RSP_1137 histone deacetylase family protein%3B Exonuclease VII small subunit;Dbxref=Genbank:YP_001534630.1,GeneID:5712353;gbkey=CDS;gene=xseB;product=exodeoxyribonuclease 7 small subunit;protein_id=YP_001534630.1;transl_table=11
NC_009952.1	RefSeq	gene	3463042	3463983	.	-	.	ID=gene3336;Name=xseB;Dbxref=GeneID:5712354;gbkey=Gene;gene=xseB;locus_tag=Dshi_3297
NC_009952.1	RefSeq	CDS	3463042	3463983	.	-	0	ID=cds3288;Name=YP_001534631.1;Parent=gene3336;Note=PFAM: histone deacetylase superfamily KEGG: rsp:RSP_1137 histone deacetylase family protein;Dbxref=Genbank:YP_001534631.1,GeneID:5712354;gbkey=CDS;product=histone deacetylase family protein;protein_id=YP_001534631.1;transl_table=11
NC_009952.1	RefSeq	gene	3464011	3464559	.	+	.	ID=gene3337;Name=Dshi_3298;Dbxref=GeneID:5712355;gbkey=Gene;locus_tag=Dshi_3298
NC_009952.1	RefSeq	CDS	3464011	3464559	.	+	0	ID=cds3289;Name=YP_001534632.1;Parent=gene3337;Note=KEGG: mlo:mlr2044 hypothetical protein;Dbxref=Genbank:YP_001534632.1,GeneID:5712355;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534632.1;transl_table=11
NC_009952.1	RefSeq	gene	3464567	3465280	.	-	.	ID=gene3338;Name=petR;Dbxref=GeneID:5712356;gbkey=Gene;gene=petR;locus_tag=Dshi_3299
NC_009952.1	RefSeq	CDS	3464567	3465280	.	-	0	ID=cds3290;Name=YP_001534633.1;Parent=gene3338;Note=Swissprot: Protein petR PFAM: response regulator receiver%3B transcriptional regulator domain protein;Dbxref=Genbank:YP_001534633.1,GeneID:5712356;gbkey=CDS;gene=petR;product=DNA-binding response regulator PetR;protein_id=YP_001534633.1;transl_table=11
NC_009952.1	RefSeq	gene	3465280	3465786	.	-	.	ID=gene3339;Name=petR;Dbxref=GeneID:5712357;gbkey=Gene;gene=petR;locus_tag=Dshi_3300
NC_009952.1	RefSeq	CDS	3465280	3465786	.	-	0	ID=cds3291;Name=YP_001534634.1;Parent=gene3339;Note=PFAM: regulatory protein MarR KEGG: rde:RD1_0552 transcriptional regulator%2C MarR family%3B MarR family;Dbxref=Genbank:YP_001534634.1,GeneID:5712357;gbkey=CDS;product=transcriptional regulator;protein_id=YP_001534634.1;transl_table=11
NC_009952.1	RefSeq	gene	3465947	3466816	.	+	.	ID=gene3340;Name=ilvE;Dbxref=GeneID:5712358;gbkey=Gene;gene=ilvE;locus_tag=Dshi_3301
NC_009952.1	RefSeq	CDS	3465947	3466816	.	+	0	ID=cds3292;Name=YP_001534635.1;Parent=gene3340;Note=catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids;Dbxref=Genbank:YP_001534635.1,GeneID:5712358;gbkey=CDS;gene=ilvE;product=branched-chain amino acid aminotransferase;protein_id=YP_001534635.1;transl_table=11
NC_009952.1	RefSeq	gene	3467100	3467408	.	+	.	ID=gene3341;Name=Dshi_3302;Dbxref=GeneID:5712359;gbkey=Gene;locus_tag=Dshi_3302
NC_009952.1	RefSeq	CDS	3467100	3467408	.	+	0	ID=cds3293;Name=YP_001534636.1;Parent=gene3341;Note=KEGG: atc:AGR_L_2414 hypothetical protein;Dbxref=Genbank:YP_001534636.1,GeneID:5712359;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534636.1;transl_table=11
NC_009952.1	RefSeq	gene	3467405	3468508	.	-	.	ID=gene3342;Name=Dshi_3303;Dbxref=GeneID:5712360;gbkey=Gene;locus_tag=Dshi_3303
NC_009952.1	RefSeq	CDS	3467405	3468508	.	-	0	ID=cds3294;Name=YP_001534637.1;Parent=gene3342;Note=REFSEQ: ref%7CZP_01012112.1 membrane protein%2C putative %5BRhodobacterale bacterium%5D;Dbxref=Genbank:YP_001534637.1,GeneID:5712360;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534637.1;transl_table=11
NC_009952.1	RefSeq	gene	3468555	3469358	.	+	.	ID=gene3343;Name=Dshi_3304;Dbxref=GeneID:5712361;gbkey=Gene;locus_tag=Dshi_3304
NC_009952.1	RefSeq	CDS	3468555	3469358	.	+	0	ID=cds3295;Name=YP_001534638.1;Parent=gene3343;Note=KEGG: sil:SPO2058 hypothetical protein;Dbxref=Genbank:YP_001534638.1,GeneID:5712361;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534638.1;transl_table=11
NC_009952.1	RefSeq	gene	3469362	3470303	.	-	.	ID=gene3344;Name=Dshi_3305;Dbxref=GeneID:5712362;gbkey=Gene;locus_tag=Dshi_3305
NC_009952.1	RefSeq	CDS	3469362	3470303	.	-	0	ID=cds3296;Name=YP_001534639.1;Parent=gene3344;Note=PFAM: integral membrane protein DUF6 KEGG: jan:Jann_3870 protein of unknown function DUF6%2C transmembrane%3B transmembrane;Dbxref=Genbank:YP_001534639.1,GeneID:5712362;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534639.1;transl_table=11
NC_009952.1	RefSeq	gene	3470332	3470643	.	-	.	ID=gene3345;Name=Dshi_3306;Dbxref=GeneID:5712363;gbkey=Gene;locus_tag=Dshi_3306
NC_009952.1	RefSeq	CDS	3470332	3470643	.	-	0	ID=cds3297;Name=YP_001534640.1;Parent=gene3345;Dbxref=Genbank:YP_001534640.1,GeneID:5712363;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534640.1;transl_table=11
NC_009952.1	RefSeq	gene	3470805	3471839	.	-	.	ID=gene3346;Name=Dshi_3307;Dbxref=GeneID:5712364;gbkey=Gene;locus_tag=Dshi_3307
NC_009952.1	RefSeq	CDS	3470805	3471839	.	-	0	ID=cds3298;Name=YP_001534641.1;Parent=gene3346;Note=TIGRFAM: iron-sulfur cluster binding protein%2C putative PFAM: domain of unknown function DUF1730 KEGG: jan:Jann_0274 4Fe-4S ferredoxin%2C iron-sulfur binding%3B %28protein of unknown function DUF1730%29;Dbxref=Genbank:YP_001534641.1,GeneID:5712364;gbkey=CDS;product=putative 4Fe-4S-binding domain-containing protein;protein_id=YP_001534641.1;transl_table=11
NC_009952.1	RefSeq	gene	3471836	3472501	.	-	.	ID=gene3347;Name=gst1;Dbxref=GeneID:5712365;gbkey=Gene;gene=gst1;locus_tag=Dshi_3308
NC_009952.1	RefSeq	CDS	3471836	3472501	.	-	0	ID=cds3299;Name=YP_001534642.1;Parent=gene3347;Note=PFAM: Glutathione S-transferase domain KEGG: rsq:Rsph17025_2783 glutathione S-transferase%2C N-terminal domain;Dbxref=Genbank:YP_001534642.1,GeneID:5712365;gbkey=CDS;gene=gst1;product=glutathione S-transferase;protein_id=YP_001534642.1;transl_table=11
NC_009952.1	RefSeq	gene	3472552	3473298	.	-	.	ID=gene3348;Name=mtgA;Dbxref=GeneID:5712366;gbkey=Gene;gene=mtgA;locus_tag=Dshi_3309
NC_009952.1	RefSeq	CDS	3472552	3473298	.	-	0	ID=cds3300;Name=YP_001534643.1;Parent=gene3348;Note=TIGRFAM: monofunctional biosynthetic peptidoglycan transglycosylase PFAM: glycosyl transferase family 51 KEGG: rsh:Rsph17029_2806 monofunctional biosynthetic peptidoglycan transglycosylase;Dbxref=Genbank:YP_001534643.1,GeneID:5712366;gbkey=CDS;gene=mtgA;product=monofunctional biosynthetic peptidoglycan transglycosylase;protein_id=YP_001534643.1;transl_table=11
NC_009952.1	RefSeq	gene	3473352	3474155	.	-	.	ID=gene3349;Name=rssA;Dbxref=GeneID:5712367;gbkey=Gene;gene=rssA;locus_tag=Dshi_3310
NC_009952.1	RefSeq	CDS	3473352	3474155	.	-	0	ID=cds3301;Name=YP_001534644.1;Parent=gene3349;Note=COG: RssA%2C Predicted esterase of the alpha-beta hydrolase superfamily PFAM: Patatin-like phospholipase;Dbxref=Genbank:YP_001534644.1,GeneID:5712367;gbkey=CDS;gene=rssA;product=patatin-like phospholipase;protein_id=YP_001534644.1;transl_table=11
NC_009952.1	RefSeq	gene	3474155	3475375	.	-	.	ID=gene3350;Name=rssA;Dbxref=GeneID:5712368;gbkey=Gene;gene=rssA;locus_tag=Dshi_3311
NC_009952.1	RefSeq	CDS	3474155	3475375	.	-	0	ID=cds3302;Name=YP_001534645.1;Parent=gene3350;Note=TIGRFAM: radical SAM enzyme%2C Cfr family PFAM: Radical SAM domain protein KEGG: rsq:Rsph17025_0041 radical SAM enzyme%2C Cfr family%3B Cfr family;Dbxref=Genbank:YP_001534645.1,GeneID:5712368;gbkey=CDS;product=radical SAM protein;protein_id=YP_001534645.1;transl_table=11
NC_009952.1	RefSeq	gene	3475522	3476199	.	+	.	ID=gene3351;Name=Dshi_3312;Dbxref=GeneID:5712369;gbkey=Gene;locus_tag=Dshi_3312
NC_009952.1	RefSeq	CDS	3475522	3476199	.	+	0	ID=cds3303;Name=YP_001534646.1;Parent=gene3351;Note=KEGG: jan:Jann_2393 hypothetical protein;Dbxref=Genbank:YP_001534646.1,GeneID:5712369;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534646.1;transl_table=11
NC_009952.1	RefSeq	gene	3476196	3476906	.	-	.	ID=gene3352;Name=Dshi_3313;Dbxref=GeneID:5712370;gbkey=Gene;locus_tag=Dshi_3313
NC_009952.1	RefSeq	CDS	3476196	3476906	.	-	0	ID=cds3304;Name=YP_001534647.1;Parent=gene3352;Note=KEGG: rsh:Rsph17029_0081 hypothetical protein;Dbxref=Genbank:YP_001534647.1,GeneID:5712370;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534647.1;transl_table=11
NC_009952.1	RefSeq	gene	3477352	3477885	.	-	.	ID=gene3353;Name=Dshi_3314;Dbxref=GeneID:5712371;gbkey=Gene;locus_tag=Dshi_3314
NC_009952.1	RefSeq	CDS	3477352	3477885	.	-	0	ID=cds3305;Name=YP_001534648.1;Parent=gene3353;Note=KEGG: rde:RD1_0193 hypothetical protein;Dbxref=Genbank:YP_001534648.1,GeneID:5712371;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534648.1;transl_table=11
NC_009952.1	RefSeq	gene	3478272	3478583	.	+	.	ID=gene3354;Name=Dshi_3315;Dbxref=GeneID:5712372;gbkey=Gene;locus_tag=Dshi_3315
NC_009952.1	RefSeq	CDS	3478272	3478583	.	+	0	ID=cds3306;Name=YP_001534649.1;Parent=gene3354;Dbxref=Genbank:YP_001534649.1,GeneID:5712372;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534649.1;transl_table=11
NC_009952.1	RefSeq	gene	3478598	3479476	.	-	.	ID=gene3355;Name=serB;Dbxref=GeneID:5712373;gbkey=Gene;gene=serB;locus_tag=Dshi_3316
NC_009952.1	RefSeq	CDS	3478598	3479476	.	-	0	ID=cds3307;Name=YP_001534650.1;Parent=gene3355;Note=KEGG: sil:SPO3353 phosphoserine phosphatase TIGRFAM: phosphoserine phosphatase SerB%3B HAD-superfamily hydrolase%2C subfamily IB %28PSPase-like%29 PFAM: Haloacid dehalogenase domain protein hydrolase;Dbxref=Genbank:YP_001534650.1,GeneID:5712373;gbkey=CDS;gene=serB;product=phosphoserine phosphatase;protein_id=YP_001534650.1;transl_table=11
NC_009952.1	RefSeq	gene	3479701	3480855	.	+	.	ID=gene3356;Name=serC;Dbxref=GeneID:5712374;gbkey=Gene;gene=serC;locus_tag=Dshi_3317
NC_009952.1	RefSeq	CDS	3479701	3480855	.	+	0	ID=cds3308;Name=YP_001534651.1;Parent=gene3356;Note=catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate;Dbxref=Genbank:YP_001534651.1,GeneID:5712374;gbkey=CDS;gene=serC;product=phosphoserine aminotransferase;protein_id=YP_001534651.1;transl_table=11
NC_009952.1	RefSeq	gene	3481012	3482607	.	+	.	ID=gene3357;Name=serA1;Dbxref=GeneID:5712375;gbkey=Gene;gene=serA1;locus_tag=Dshi_3318
NC_009952.1	RefSeq	CDS	3481012	3482607	.	+	0	ID=cds3309;Name=YP_001534652.1;Parent=gene3357;Note=catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis%3B can also reduce alpha ketoglutarate to form 2-hydroxyglutarate;Dbxref=Genbank:YP_001534652.1,GeneID:5712375;gbkey=CDS;gene=serA1;product=D-3-phosphoglycerate dehydrogenase;protein_id=YP_001534652.1;transl_table=11
NC_009952.1	RefSeq	gene	3482662	3483396	.	+	.	ID=gene3358;Name=Dshi_3319;Dbxref=GeneID:5712376;gbkey=Gene;locus_tag=Dshi_3319
NC_009952.1	RefSeq	CDS	3482662	3483396	.	+	0	ID=cds3310;Name=YP_001534653.1;Parent=gene3358;Note=PFAM: metallophosphoesterase KEGG: rsq:Rsph17025_0011 metallophosphoesterase;Dbxref=Genbank:YP_001534653.1,GeneID:5712376;gbkey=CDS;product=metallophosphoesterase;protein_id=YP_001534653.1;transl_table=11
NC_009952.1	RefSeq	gene	3483410	3483616	.	-	.	ID=gene3359;Name=Dshi_3320;Dbxref=GeneID:5712377;gbkey=Gene;locus_tag=Dshi_3320
NC_009952.1	RefSeq	CDS	3483410	3483616	.	-	0	ID=cds3311;Name=YP_001534654.1;Parent=gene3359;Note=KEGG: rde:RD1_1295 hypothetical protein;Dbxref=Genbank:YP_001534654.1,GeneID:5712377;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534654.1;transl_table=11
NC_009952.1	RefSeq	gene	3483814	3484269	.	+	.	ID=gene3360;Name=Dshi_3321;Dbxref=GeneID:5712378;gbkey=Gene;locus_tag=Dshi_3321
NC_009952.1	RefSeq	CDS	3483814	3484269	.	+	0	ID=cds3312;Name=YP_001534655.1;Parent=gene3360;Note=PFAM: CreA family protein KEGG: rsh:Rsph17029_1167 CreA family protein;Dbxref=Genbank:YP_001534655.1,GeneID:5712378;gbkey=CDS;product=CreA family protein;protein_id=YP_001534655.1;transl_table=11
NC_009952.1	RefSeq	gene	3484266	3485303	.	-	.	ID=gene3361;Name=Dshi_3322;Dbxref=GeneID:5712379;gbkey=Gene;locus_tag=Dshi_3322
NC_009952.1	RefSeq	CDS	3484266	3485303	.	-	0	ID=cds3313;Name=YP_001534656.1;Parent=gene3361;Note=PFAM: regulatory protein LacI%3B periplasmic binding protein%2FLacI transcriptional regulator KEGG: sil:SPO3684 transcriptional regulator%2C LacI family%3B LacI family;Dbxref=Genbank:YP_001534656.1,GeneID:5712379;gbkey=CDS;product=transcriptional regulator;protein_id=YP_001534656.1;transl_table=11
NC_009952.1	RefSeq	gene	3485578	3486258	.	-	.	ID=gene3362;Name=Dshi_3323;Dbxref=GeneID:5712380;gbkey=Gene;locus_tag=Dshi_3323
NC_009952.1	RefSeq	CDS	3485578	3486258	.	-	0	ID=cds3314;Name=YP_001534657.1;Parent=gene3362;Note=PFAM: regulatory protein GntR HTH%3B GntR domain protein KEGG: jan:Jann_1164 transcriptional regulator%2C GntR family%3B GntR family;Dbxref=Genbank:YP_001534657.1,GeneID:5712380;gbkey=CDS;product=transcriptional regulator;protein_id=YP_001534657.1;transl_table=11
NC_009952.1	RefSeq	gene	3486236	3489157	.	-	.	ID=gene3363;Name=dld2;Dbxref=GeneID:5712381;gbkey=Gene;gene=dld2;locus_tag=Dshi_3324
NC_009952.1	RefSeq	CDS	3486236	3489157	.	-	0	ID=cds3315;Name=YP_001534658.1;Parent=gene3363;Note=PFAM: FAD binding domain%2C FAD linked oxidases KEGG: jan:Jann_1163 D-lactate dehydrogenase %28cytochrome%29;Dbxref=Genbank:YP_001534658.1,GeneID:5712381;gbkey=CDS;gene=dld2;product=D-lactate dehydrogenase;protein_id=YP_001534658.1;transl_table=11
NC_009952.1	RefSeq	gene	3489205	3490473	.	+	.	ID=gene3364;Name=sgaA1;Dbxref=GeneID:5712382;gbkey=Gene;gene=sgaA1;locus_tag=Dshi_3325
NC_009952.1	RefSeq	CDS	3489205	3490473	.	+	0	ID=cds3316;Name=YP_001534659.1;Parent=gene3364;Note=Swissprot: Q56YA5 Serine--glyoxylate aminotransferase PFAM: aminotransferase class V%3B aromatic amino acid beta-eliminating lyase%2Fthreonine aldolase KEGG: jan:Jann_1162 aminotransferase%2C class V%3B Serine--pyruvate aminotransferase%3B AGT%3B Alanine--glyoxylate aminotransferase;Dbxref=Genbank:YP_001534659.1,GeneID:5712382;gbkey=CDS;gene=sgaA1;product=serine--glyoxylate aminotransferase;protein_id=YP_001534659.1;transl_table=11
NC_009952.1	RefSeq	gene	3490512	3491489	.	+	.	ID=gene3365;Name=dctP3;Dbxref=GeneID:5712383;gbkey=Gene;gene=dctP3;locus_tag=Dshi_3326
NC_009952.1	RefSeq	CDS	3490512	3491489	.	+	0	ID=cds3317;Name=YP_001534660.1;Parent=gene3365;Note=TIGRFAM: TRAP dicarboxylate transporter%2C DctP subunit PFAM: TRAP dicarboxylate transporter- DctP subunit KEGG: pmu:PM1651 hypothetical E.coli%3B precursor;Dbxref=Genbank:YP_001534660.1,GeneID:5712383;gbkey=CDS;gene=dctP3;product=TRAP dicarboxylate transporter subunit DctP;protein_id=YP_001534660.1;transl_table=11
NC_009952.1	RefSeq	gene	3491612	3492154	.	+	.	ID=gene3366;Name=dctQ1;Dbxref=GeneID:5712384;gbkey=Gene;gene=dctQ1;locus_tag=Dshi_3327
NC_009952.1	RefSeq	CDS	3491612	3492154	.	+	0	ID=cds3318;Name=YP_001534661.1;Parent=gene3366;Note=PFAM: Tripartite ATP-independent periplasmic transporter DctQ component;Dbxref=Genbank:YP_001534661.1,GeneID:5712384;gbkey=CDS;gene=dctQ1;product=TRAP dicarboxylate transporter subunit DctQ;protein_id=YP_001534661.1;transl_table=11
NC_009952.1	RefSeq	gene	3492154	3493434	.	+	.	ID=gene3367;Name=dctM4;Dbxref=GeneID:5712385;gbkey=Gene;gene=dctM4;locus_tag=Dshi_3328
NC_009952.1	RefSeq	CDS	3492154	3493434	.	+	0	ID=cds3319;Name=YP_001534662.1;Parent=gene3367;Note=TIGRFAM: TRAP dicarboxylate transporter%2C DctM subunit PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit;Dbxref=Genbank:YP_001534662.1,GeneID:5712385;gbkey=CDS;gene=dctM4;product=TRAP dicarboxylate transporter subunit DctM;protein_id=YP_001534662.1;transl_table=11
NC_009952.1	RefSeq	gene	3493431	3494204	.	+	.	ID=gene3368;Name=dctM4;Dbxref=GeneID:5712386;gbkey=Gene;gene=dctM4;locus_tag=Dshi_3329
NC_009952.1	RefSeq	CDS	3493431	3494204	.	+	0	ID=cds3320;Name=YP_001534663.1;Parent=gene3368;Note=Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA;Dbxref=Genbank:YP_001534663.1,GeneID:5712386;gbkey=CDS;product=enoyl-CoA hydratase;protein_id=YP_001534663.1;transl_table=11
NC_009952.1	RefSeq	gene	3494201	3495436	.	+	.	ID=gene3369;Name=yfdW1;Dbxref=GeneID:5712387;gbkey=Gene;gene=yfdW1;locus_tag=Dshi_3330
NC_009952.1	RefSeq	CDS	3494201	3495436	.	+	0	ID=cds3321;Name=YP_001534664.1;Parent=gene3369;Note=PFAM: CoA-transferase family III PRK: formyl-coenzyme A transferase;Dbxref=Genbank:YP_001534664.1,GeneID:5712387;gbkey=CDS;gene=yfdW1;product=formyl-CoA transferase;protein_id=YP_001534664.1;transl_table=11
NC_009952.1	RefSeq	gene	3495494	3495570	.	+	.	ID=gene3370;Name=Dshi_6049;Dbxref=GeneID:5712388;gbkey=Gene;locus_tag=Dshi_6049
NC_009952.1	RefSeq	tRNA	3495494	3495570	.	+	.	ID=rna48;Parent=gene3370;Dbxref=GeneID:5712388;codons=47;gbkey=tRNA;product=tRNA-Arg
NC_009952.1	RefSeq	exon	3495494	3495570	.	+	.	ID=id54;Parent=rna48;Dbxref=GeneID:5712388;codons=47;gbkey=tRNA;product=tRNA-Arg
NC_009952.1	RefSeq	gene	3495749	3496933	.	+	.	ID=gene3371;Name=bktB;Dbxref=GeneID:5712389;gbkey=Gene;gene=bktB;locus_tag=Dshi_3331
NC_009952.1	RefSeq	CDS	3495749	3496933	.	+	0	ID=cds3322;Name=YP_001534665.1;Parent=gene3371;Note=catalyzes the formation of beta-ketovaleryl-CoA from acetyl-CoA and propionyl-CoA;Dbxref=Genbank:YP_001534665.1,GeneID:5712389;gbkey=CDS;gene=bktB;product=beta-ketothiolase;protein_id=YP_001534665.1;transl_table=11
NC_009952.1	RefSeq	gene	3497022	3499481	.	+	.	ID=gene3372;Name=Dshi_3332;Dbxref=GeneID:5712390;gbkey=Gene;locus_tag=Dshi_3332
NC_009952.1	RefSeq	CDS	3497022	3499481	.	+	0	ID=cds3323;Name=YP_001534666.1;Parent=gene3372;Note=PFAM: response regulator receiver%3B ATP-binding region ATPase domain protein%3B histidine kinase A domain protein KEGG: rde:RD1_0357 hybrid sensory histidine kinase%2C putative;Dbxref=Genbank:YP_001534666.1,GeneID:5712390;gbkey=CDS;product=sensor histidine kinase%2Fresponse regulator;protein_id=YP_001534666.1;transl_table=11
NC_009952.1	RefSeq	gene	3499478	3500281	.	-	.	ID=gene3373;Name=Dshi_3333;Dbxref=GeneID:5712391;gbkey=Gene;locus_tag=Dshi_3333
NC_009952.1	RefSeq	CDS	3499478	3500281	.	-	0	ID=cds3324;Name=YP_001534667.1;Parent=gene3373;Note=PFAM: protein of unknown function DUF328 KEGG: sil:SPO0106 hypothetical protein;Dbxref=Genbank:YP_001534667.1,GeneID:5712391;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534667.1;transl_table=11
NC_009952.1	RefSeq	gene	3500340	3502379	.	-	.	ID=gene3374;Name=recQ;Dbxref=GeneID:5712392;gbkey=Gene;gene=recQ;locus_tag=Dshi_3334
NC_009952.1	RefSeq	CDS	3500340	3502379	.	-	0	ID=cds3325;Name=YP_001534668.1;Parent=gene3374;Note=KEGG: rde:RD1_0359 ATP-dependent DNA helicase RecQ TIGRFAM: ATP-dependent DNA helicase RecQ PFAM: helicase domain protein%3B HRDC domain protein%3B DEAD%2FDEAH box helicase domain protein%3B Helicase superfamily 1 and 2 ATP-binding SMART: DEAD-like helicases;Dbxref=Genbank:YP_001534668.1,GeneID:5712392;gbkey=CDS;gene=recQ;product=ATP-dependent DNA helicase RecQ;protein_id=YP_001534668.1;transl_table=11
NC_009952.1	RefSeq	gene	3502462	3502749	.	-	.	ID=gene3375;Name=Dshi_3335;Dbxref=GeneID:5712393;gbkey=Gene;locus_tag=Dshi_3335
NC_009952.1	RefSeq	CDS	3502462	3502749	.	-	0	ID=cds3326;Name=YP_001534669.1;Parent=gene3375;Note=PFAM: protein of unknown function YGGT KEGG: sil:SPO0122 YGGT family protein%3B transmembrane;Dbxref=Genbank:YP_001534669.1,GeneID:5712393;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534669.1;transl_table=11
NC_009952.1	RefSeq	gene	3502874	3503410	.	+	.	ID=gene3376;Name=Dshi_3336;Dbxref=GeneID:5712394;gbkey=Gene;locus_tag=Dshi_3336
NC_009952.1	RefSeq	CDS	3502874	3503410	.	+	0	ID=cds3327;Name=YP_001534670.1;Parent=gene3376;Note=KEGG: sit:TM1040_2661 hypothetical protein;Dbxref=Genbank:YP_001534670.1,GeneID:5712394;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534670.1;transl_table=11
NC_009952.1	RefSeq	gene	3503472	3504803	.	+	.	ID=gene3377;Name=Dshi_3337;Dbxref=GeneID:5712395;gbkey=Gene;locus_tag=Dshi_3337
NC_009952.1	RefSeq	CDS	3503472	3504803	.	+	0	ID=cds3328;Name=YP_001534671.1;Parent=gene3377;Note=PFAM: major facilitator superfamily MFS_1 KEGG: jan:Jann_0343 major facilitator superfamily MFS_1;Dbxref=Genbank:YP_001534671.1,GeneID:5712395;gbkey=CDS;product=major facilitator superfamily %28MFS%29 transporter;protein_id=YP_001534671.1;transl_table=11
NC_009952.1	RefSeq	gene	3504800	3505690	.	+	.	ID=gene3378;Name=mepA;Dbxref=GeneID:5712396;gbkey=Gene;gene=mepA;locus_tag=Dshi_3338
NC_009952.1	RefSeq	CDS	3504800	3505690	.	+	0	ID=cds3329;Name=YP_001534672.1;Parent=gene3378;Note=D-alanyl-D-alanine endopeptidase%3B functions in hydrolyzing cell wall peptidoglycan%3B similar to LAS metallopeptidases%3B forms a dimer in periplasm;Dbxref=Genbank:YP_001534672.1,GeneID:5712396;gbkey=CDS;gene=mepA;product=penicillin-insensitive murein endopeptidase;protein_id=YP_001534672.1;transl_table=11
NC_009952.1	RefSeq	gene	3505663	3506544	.	+	.	ID=gene3379;Name=mepA;Dbxref=GeneID:5712397;gbkey=Gene;gene=mepA;locus_tag=Dshi_3339
NC_009952.1	RefSeq	CDS	3505663	3506544	.	+	0	ID=cds3330;Name=YP_001534673.1;Parent=gene3379;Note=KEGG: rsq:Rsph17025_0022 hypothetical protein;Dbxref=Genbank:YP_001534673.1,GeneID:5712397;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534673.1;transl_table=11
NC_009952.1	RefSeq	gene	3506634	3507257	.	+	.	ID=gene3380;Name=Dshi_3340;Dbxref=GeneID:5712398;gbkey=Gene;locus_tag=Dshi_3340
NC_009952.1	RefSeq	CDS	3506634	3507257	.	+	0	ID=cds3331;Name=YP_001534674.1;Parent=gene3380;Note=TIGRFAM: conserved hypothetical integral membrane protein PFAM: protein of unknown function DUF165 KEGG: sit:TM1040_2665 protein of unknown function DUF165;Dbxref=Genbank:YP_001534674.1,GeneID:5712398;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534674.1;transl_table=11
NC_009952.1	RefSeq	gene	3507600	3509015	.	+	.	ID=gene3381;Name=rimK;Dbxref=GeneID:5712399;gbkey=Gene;gene=rimK;locus_tag=Dshi_3341
NC_009952.1	RefSeq	CDS	3507600	3509015	.	+	0	ID=cds3332;Name=YP_001534675.1;Parent=gene3381;Note=TIGRFAM: alpha-L-glutamate ligase%2C RimK family PFAM: RimK domain protein ATP-grasp KEGG: rde:RD1_2956 ribosomal protein S6 modification protein %28C terminal domain%29;Dbxref=Genbank:YP_001534675.1,GeneID:5712399;gbkey=CDS;gene=rimK;product=ribosomal protein S6 modification protein;protein_id=YP_001534675.1;transl_table=11
NC_009952.1	RefSeq	gene	3509061	3509483	.	+	.	ID=gene3382;Name=Dshi_3342;Dbxref=GeneID:5712400;gbkey=Gene;locus_tag=Dshi_3342
NC_009952.1	RefSeq	CDS	3509061	3509483	.	+	0	ID=cds3333;Name=YP_001534676.1;Parent=gene3382;Note=PFAM: Class I peptide chain release factor KEGG: rde:RD1_0366 peptidyl-tRNA hydrolase%2C putative;Dbxref=Genbank:YP_001534676.1,GeneID:5712400;gbkey=CDS;product=peptidyl-tRNA hydrolase domain-containing protein;protein_id=YP_001534676.1;transl_table=11
NC_009952.1	RefSeq	gene	3509480	3510721	.	+	.	ID=gene3383;Name=Dshi_3343;Dbxref=GeneID:5712401;gbkey=Gene;locus_tag=Dshi_3343
NC_009952.1	RefSeq	CDS	3509480	3510721	.	+	0	ID=cds3334;Name=YP_001534677.1;Parent=gene3383;Note=PFAM: aminotransferase class-III KEGG: sil:SPOA0354 aminotransferase%2C class III;Dbxref=Genbank:YP_001534677.1,GeneID:5712401;gbkey=CDS;product=class III aminotransferase;protein_id=YP_001534677.1;transl_table=11
NC_009952.1	RefSeq	gene	3510709	3511665	.	+	.	ID=gene3384;Name=Dshi_3344;Dbxref=GeneID:5712402;gbkey=Gene;locus_tag=Dshi_3344
NC_009952.1	RefSeq	CDS	3510709	3511665	.	+	0	ID=cds3335;Name=YP_001534678.1;Parent=gene3384;Note=PFAM: aminoglycoside phosphotransferase;Dbxref=Genbank:YP_001534678.1,GeneID:5712402;gbkey=CDS;product=aminoglycoside phosphotransferase;protein_id=YP_001534678.1;transl_table=11
NC_009952.1	RefSeq	gene	3511662	3512954	.	-	.	ID=gene3385;Name=pncB;Dbxref=GeneID:5712403;gbkey=Gene;gene=pncB;locus_tag=Dshi_3345
NC_009952.1	RefSeq	CDS	3511662	3512954	.	-	0	ID=cds3336;Name=YP_001534679.1;Parent=gene3385;Note=catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate;Dbxref=Genbank:YP_001534679.1,GeneID:5712403;gbkey=CDS;gene=pncB;product=nicotinate phosphoribosyltransferase;protein_id=YP_001534679.1;transl_table=11
NC_009952.1	RefSeq	gene	3513033	3515378	.	-	.	ID=gene3386;Name=Dshi_3346;Dbxref=GeneID:5712404;gbkey=Gene;locus_tag=Dshi_3346
NC_009952.1	RefSeq	CDS	3513033	3515378	.	-	0	ID=cds3337;Name=YP_001534680.1;Parent=gene3386;Note=KEGG: sil:SPO0094 sensory box sensor histidine kinase%2Fresponse regulator TIGRFAM: PAS sensor protein PFAM: response regulator receiver%3B ATP-binding region ATPase domain protein%3B histidine kinase A domain protein%3B PAS fold-3 domain protein%3B PAS fold-4 domain protein%3B PAS fold domain protein SMART: PAS domain containing protein%3B PAC repeat-containing protein;Dbxref=Genbank:YP_001534680.1,GeneID:5712404;gbkey=CDS;product=multi-sensor hybrid histidine kinase;protein_id=YP_001534680.1;transl_table=11
NC_009952.1	RefSeq	gene	3515388	3515990	.	-	.	ID=gene3387;Name=pncA;Dbxref=GeneID:5712405;gbkey=Gene;gene=pncA;locus_tag=Dshi_3347
NC_009952.1	RefSeq	CDS	3515388	3515990	.	-	0	ID=cds3338;Name=YP_001534681.1;Parent=gene3387;Note=KEGG: jan:Jann_0014 nicotinamidase;Dbxref=Genbank:YP_001534681.1,GeneID:5712405;gbkey=CDS;gene=pncA;product=nicotinamidase;protein_id=YP_001534681.1;transl_table=11
NC_009952.1	RefSeq	gene	3516052	3516993	.	+	.	ID=gene3388;Name=Dshi_3348;Dbxref=GeneID:5712406;gbkey=Gene;locus_tag=Dshi_3348
NC_009952.1	RefSeq	CDS	3516052	3516993	.	+	0	ID=cds3339;Name=YP_001534682.1;Parent=gene3388;Note=PFAM: Rhodanese domain protein KEGG: pde:Pden_0850 rhodanese domain protein;Dbxref=Genbank:YP_001534682.1,GeneID:5712406;gbkey=CDS;product=rhodanese domain-containing protein;protein_id=YP_001534682.1;transl_table=11
NC_009952.1	RefSeq	gene	3517036	3518097	.	+	.	ID=gene3389;Name=ybbB;Dbxref=GeneID:5712407;gbkey=Gene;gene=ybbB;locus_tag=Dshi_3349
NC_009952.1	RefSeq	CDS	3517036	3518097	.	+	0	ID=cds3340;Name=YP_001534683.1;Parent=gene3389;Note=PRK tRNA 2-selenouridine synthase;Dbxref=Genbank:YP_001534683.1,GeneID:5712407;gbkey=CDS;gene=ybbB;product=tRNA 2-selenouridine synthase;protein_id=YP_001534683.1;transl_table=11
NC_009952.1	RefSeq	gene	3518104	3520233	.	-	.	ID=gene3390;Name=selD;Dbxref=GeneID:5712408;gbkey=Gene;gene=selD;locus_tag=Dshi_3350
NC_009952.1	RefSeq	CDS	3518104	3520233	.	-	0	ID=cds3341;Name=YP_001534684.1;Parent=gene3390;Note=TIGRFAM: selenium donor protein PFAM: AIR synthase related protein domain protein KEGG: sil:SPO2899 selenide%2Cwater dikinase%2C putative%3B %28Selenophosphate synthetase%29 %28Selenium donor protein%29;Dbxref=Genbank:YP_001534684.1,GeneID:5712408;gbkey=CDS;gene=selD;product=selenide%2C water dikinase;protein_id=YP_001534684.1;transl_table=11
NC_009952.1	RefSeq	gene	3520331	3521806	.	+	.	ID=gene3391;Name=Dshi_3351;Dbxref=GeneID:5712409;gbkey=Gene;locus_tag=Dshi_3351
NC_009952.1	RefSeq	CDS	3520331	3521806	.	+	0	ID=cds3342;Name=YP_001534685.1;Parent=gene3391;Note=KEGG: bbt:BBta_2726 putative membrane protein of unknown function;Dbxref=Genbank:YP_001534685.1,GeneID:5712409;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534685.1;transl_table=11
NC_009952.1	RefSeq	gene	3522370	3523434	.	-	.	ID=gene3392;Name=Dshi_3352;Dbxref=GeneID:5712410;gbkey=Gene;locus_tag=Dshi_3352
NC_009952.1	RefSeq	CDS	3522370	3523434	.	-	0	ID=cds3343;Name=YP_001534686.1;Parent=gene3392;Note=KEGG: jan:Jann_0255 hypothetical protein;Dbxref=Genbank:YP_001534686.1,GeneID:5712410;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534686.1;transl_table=11
NC_009952.1	RefSeq	gene	3523424	3525826	.	-	.	ID=gene3393;Name=Dshi_3353;Dbxref=GeneID:5712411;gbkey=Gene;locus_tag=Dshi_3353
NC_009952.1	RefSeq	CDS	3523424	3525826	.	-	0	ID=cds3344;Name=YP_001534687.1;Parent=gene3393;Note=PFAM: Predicted permease KEGG: rsq:Rsph17025_3021 protein of unknown function DUF214%3B protein of unknown function DUF214;Dbxref=Genbank:YP_001534687.1,GeneID:5712411;gbkey=CDS;product=putative permease FtsX;protein_id=YP_001534687.1;transl_table=11
NC_009952.1	RefSeq	gene	3525826	3526482	.	-	.	ID=gene3394;Name=Dshi_3354;Dbxref=GeneID:5712412;gbkey=Gene;locus_tag=Dshi_3354
NC_009952.1	RefSeq	CDS	3525826	3526482	.	-	0	ID=cds3345;Name=YP_001534688.1;Parent=gene3394;Note=PFAM: FtsE%2C Predicted ATPase involved in cell division;Dbxref=Genbank:YP_001534688.1,GeneID:5712412;gbkey=CDS;product=putative ATPase involved in cell division FtsE;protein_id=YP_001534688.1;transl_table=11
NC_009952.1	RefSeq	gene	3526685	3529102	.	+	.	ID=gene3395;Name=gyrB;Dbxref=GeneID:5712413;gbkey=Gene;gene=gyrB;locus_tag=Dshi_3355
NC_009952.1	RefSeq	CDS	3526685	3529102	.	+	0	ID=cds3346;Name=YP_001534689.1;Parent=gene3395;Note=negatively supercoils closed circular double-stranded DNA;Dbxref=Genbank:YP_001534689.1,GeneID:5712413;gbkey=CDS;gene=gyrB;product=DNA gyrase subunit B;protein_id=YP_001534689.1;transl_table=11
NC_009952.1	RefSeq	gene	3530095	3530361	.	+	.	ID=gene3396;Name=Dshi_3356;Dbxref=GeneID:5712414;gbkey=Gene;locus_tag=Dshi_3356
NC_009952.1	RefSeq	CDS	3530095	3530361	.	+	0	ID=cds3347;Name=YP_001534690.1;Parent=gene3396;Note=PFAM: Transposase KEGG: mag:amb0646 insertion element ISR1 hypothetical 10 kDa protein A3;Dbxref=Genbank:YP_001534690.1,GeneID:5712414;gbkey=CDS;product=insertion element ISR1 10 kDa protein A3;protein_id=YP_001534690.1;transl_table=11
NC_009952.1	RefSeq	gene	3530385	3531194	.	+	.	ID=gene3397;Name=Dshi_3357;Dbxref=GeneID:5712415;gbkey=Gene;locus_tag=Dshi_3357
NC_009952.1	RefSeq	CDS	3530385	3531194	.	+	0	ID=cds3348;Name=YP_001534691.1;Parent=gene3397;Note=PFAM: Integrase catalytic region KEGG: bbt:BBta_7691 integrase%2C catalytic domain;Dbxref=Genbank:YP_001534691.1,GeneID:5712415;gbkey=CDS;product=integrase catalytic subunit;protein_id=YP_001534691.1;transl_table=11
NC_009952.1	RefSeq	gene	3531547	3532338	.	-	.	ID=gene3398;Name=Dshi_3358;Dbxref=GeneID:5712416;gbkey=Gene;locus_tag=Dshi_3358
NC_009952.1	RefSeq	CDS	3531547	3532338	.	-	0	ID=cds3349;Name=YP_001534692.1;Parent=gene3398;Note=PFAM: protein of unknown function DUF1217 KEGG: sil:SPO3456 flagellar protein%2C putative;Dbxref=Genbank:YP_001534692.1,GeneID:5712416;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534692.1;transl_table=11
NC_009952.1	RefSeq	gene	3532338	3532739	.	-	.	ID=gene3399;Name=flbT;Dbxref=GeneID:5712417;gbkey=Gene;gene=flbT;locus_tag=Dshi_3359
NC_009952.1	RefSeq	CDS	3532338	3532739	.	-	0	ID=cds3350;Name=YP_001534693.1;Parent=gene3399;Note=post-transcriptional repressor of flagellum biosynthesis%3B promotes degradation of fljK mRNA: Bradyrhizobium has one thick flagellum and several thin flagella%3B the protein in this cluster is associated with the thin flagella;Dbxref=Genbank:YP_001534693.1,GeneID:5712417;gbkey=CDS;gene=flbT;product=flagellar biosynthesis repressor FlbT;protein_id=YP_001534693.1;transl_table=11
NC_009952.1	RefSeq	gene	3532736	3533107	.	-	.	ID=gene3400;Name=flaF;Dbxref=GeneID:5712418;gbkey=Gene;gene=flaF;locus_tag=Dshi_3360
NC_009952.1	RefSeq	CDS	3532736	3533107	.	-	0	ID=cds3351;Name=YP_001534694.1;Parent=gene3400;Note=acts as an activator of flagellin translation and may be required for filament secretion or assembly%3B Bradyrhizobium has one thick flagellum and several thin flagella%3B the Bradyrhizobium protein in this cluster is associated with the thick flagellum;Dbxref=Genbank:YP_001534694.1,GeneID:5712418;gbkey=CDS;gene=flaF;product=flagellar biosynthesis regulatory protein FlaF;protein_id=YP_001534694.1;transl_table=11
NC_009952.1	RefSeq	gene	3533170	3534720	.	-	.	ID=gene3401;Name=fliC;Dbxref=GeneID:5712419;gbkey=Gene;gene=fliC;locus_tag=Dshi_3361
NC_009952.1	RefSeq	CDS	3533170	3534720	.	-	0	ID=cds3352;Name=YP_001534695.1;Parent=gene3401;Note=PFAM: flagellin domain protein KEGG: jan:Jann_4203 flagellin-like;Dbxref=Genbank:YP_001534695.1,GeneID:5712419;gbkey=CDS;gene=fliC;product=flagellin;protein_id=YP_001534695.1;transl_table=11
NC_009952.1	RefSeq	gene	3534911	3535219	.	-	.	ID=gene3402;Name=Dshi_3362;Dbxref=GeneID:5712420;gbkey=Gene;locus_tag=Dshi_3362
NC_009952.1	RefSeq	CDS	3534911	3535219	.	-	0	ID=cds3353;Name=YP_001534696.1;Parent=gene3402;Dbxref=Genbank:YP_001534696.1,GeneID:5712420;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534696.1;transl_table=11
NC_009952.1	RefSeq	gene	3535242	3535544	.	-	.	ID=gene3403;Name=Dshi_3363;Dbxref=GeneID:5712421;gbkey=Gene;locus_tag=Dshi_3363
NC_009952.1	RefSeq	CDS	3535242	3535544	.	-	0	ID=cds3354;Name=YP_001534697.1;Parent=gene3403;Note=PRK: flgJ%2C peptidoglycan hydrolase KEGG: sit:TM1040_2976 flagellar protein FlgJ%2C putative;Dbxref=Genbank:YP_001534697.1,GeneID:5712421;gbkey=CDS;product=putative flagellar protein FlgJ;protein_id=YP_001534697.1;transl_table=11
NC_009952.1	RefSeq	gene	3535667	3538003	.	+	.	ID=gene3404;Name=Dshi_3364;Dbxref=GeneID:5712422;gbkey=Gene;locus_tag=Dshi_3364
NC_009952.1	RefSeq	CDS	3535667	3538003	.	+	0	ID=cds3355;Name=YP_001534698.1;Parent=gene3404;Note=PFAM: flagellar hook-length control protein;Dbxref=Genbank:YP_001534698.1,GeneID:5712422;gbkey=CDS;product=putative flagellar hook-length control protein;protein_id=YP_001534698.1;transl_table=11
NC_009952.1	RefSeq	gene	3538012	3538674	.	+	.	ID=gene3405;Name=flgD;Dbxref=GeneID:5712423;gbkey=Gene;gene=flgD;locus_tag=Dshi_3365
NC_009952.1	RefSeq	CDS	3538012	3538674	.	+	0	ID=cds3356;Name=YP_001534699.1;Parent=gene3405;Note=acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod%3B Rhodobacter sphaeroides has 2 copies of many flagellar genes%3B the Rhodobacter protein in this cluster is associated with a set of flagellar genes acquired by lateral gene transfer%3B these genes are not normally expressed;Dbxref=Genbank:YP_001534699.1,GeneID:5712423;gbkey=CDS;gene=flgD;product=flagellar basal body rod modification protein;protein_id=YP_001534699.1;transl_table=11
NC_009952.1	RefSeq	gene	3538823	3539614	.	+	.	ID=gene3406;Name=Dshi_3366;Dbxref=GeneID:5712424;gbkey=Gene;locus_tag=Dshi_3366
NC_009952.1	RefSeq	CDS	3538823	3539614	.	+	0	ID=cds3357;Name=YP_001534700.1;Parent=gene3406;Note=PFAM: Phosphotransferase enzyme family Genbank: gb%7CABF65711.1 aminoglycoside phosphotransferase %28Silicibacter sp.%29;Dbxref=Genbank:YP_001534700.1,GeneID:5712424;gbkey=CDS;product=putative aminoglycoside phosphotransferase;protein_id=YP_001534700.1;transl_table=11
NC_009952.1	RefSeq	gene	3539582	3541111	.	-	.	ID=gene3407;Name=ubiB;Dbxref=GeneID:5712425;gbkey=Gene;gene=ubiB;locus_tag=Dshi_3367
NC_009952.1	RefSeq	CDS	3539582	3541111	.	-	0	ID=cds3358;Name=YP_001534701.1;Parent=gene3407;Note=TIGRFAM: 2-polyprenylphenol 6-hydroxylase PFAM: ABC-1 domain protein KEGG: rde:RD1_0202 ubiquinone biosynthesis protein UbiB;Dbxref=Genbank:YP_001534701.1,GeneID:5712425;gbkey=CDS;gene=ubiB;product=2-polyprenylphenol 6-hydroxylase;protein_id=YP_001534701.1;transl_table=11
NC_009952.1	RefSeq	gene	3541114	3541866	.	-	.	ID=gene3408;Name=ubiE;Dbxref=GeneID:5712426;gbkey=Gene;gene=ubiE;locus_tag=Dshi_3368
NC_009952.1	RefSeq	CDS	3541114	3541866	.	-	0	ID=cds3359;Name=YP_001534702.1;Parent=gene3408;Note=TIGRFAM: ubiquinone biosynthesis methyltransferase PFAM: UbiE%2FCOQ5 methyltransferase%3B Methyltransferase type 11%3B Methyltransferase type 12 KEGG: jan:Jann_4209 ubiquinone%2Fmenaquinone biosynthesis methyltransferases PMID: 9045837;Dbxref=Genbank:YP_001534702.1,GeneID:5712426;gbkey=CDS;gene=ubiE;product=2-polyprenylmethoxybenozoquinol methylase;protein_id=YP_001534702.1;transl_table=11
NC_009952.1	RefSeq	gene	3541951	3542805	.	+	.	ID=gene3409;Name=mutM;Dbxref=GeneID:5712427;gbkey=Gene;gene=mutM;locus_tag=Dshi_3369
NC_009952.1	RefSeq	CDS	3541951	3542805	.	+	0	ID=cds3360;Name=YP_001534703.1;Parent=gene3409;Note=Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases;Dbxref=Genbank:YP_001534703.1,GeneID:5712427;gbkey=CDS;gene=mutM;product=formamidopyrimidine-DNA glycosylase;protein_id=YP_001534703.1;transl_table=11
NC_009952.1	RefSeq	gene	3542870	3543646	.	+	.	ID=gene3410;Name=Dshi_3370;Dbxref=GeneID:5712428;gbkey=Gene;locus_tag=Dshi_3370
NC_009952.1	RefSeq	CDS	3542870	3543646	.	+	0	ID=cds3361;Name=YP_001534704.1;Parent=gene3410;Note=PFAM: Enoyl-CoA hydratase%2Fisomerase KEGG: rsh:Rsph17029_0009 enoyl-CoA hydratase%2Fisomerase;Dbxref=Genbank:YP_001534704.1,GeneID:5712428;gbkey=CDS;product=enoyl-CoA hydratase%2Fisomerase;protein_id=YP_001534704.1;transl_table=11
NC_009952.1	RefSeq	gene	3543739	3544005	.	+	.	ID=gene3411;Name=rpsT;Dbxref=GeneID:5712429;gbkey=Gene;gene=rpsT;locus_tag=Dshi_3371
NC_009952.1	RefSeq	CDS	3543739	3544005	.	+	0	ID=cds3362;Name=YP_001534705.1;Parent=gene3411;Note=binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase;Dbxref=Genbank:YP_001534705.1,GeneID:5712429;gbkey=CDS;gene=rpsT;product=30S ribosomal protein S20;protein_id=YP_001534705.1;transl_table=11
NC_009952.1	RefSeq	gene	3544233	3544682	.	+	.	ID=gene3412;Name=yibN;Dbxref=GeneID:5712430;gbkey=Gene;gene=yibN;locus_tag=Dshi_3372
NC_009952.1	RefSeq	CDS	3544233	3544682	.	+	0	ID=cds3363;Name=YP_001534706.1;Parent=gene3412;Note=PFAM: Rhodanese Homology Domain superfamily%2C subgroup 1 COG: PspE%2C Rhodanese-related sulfurtransferase;Dbxref=Genbank:YP_001534706.1,GeneID:5712430;gbkey=CDS;gene=yibN;product=rhodanese-like sulfurtransferase;protein_id=YP_001534706.1;transl_table=11
NC_009952.1	RefSeq	gene	3544704	3546086	.	+	.	ID=gene3413;Name=dnaA;Dbxref=GeneID:5712431;gbkey=Gene;gene=dnaA;locus_tag=Dshi_3373
NC_009952.1	RefSeq	CDS	3544704	3546086	.	+	0	ID=cds3364;Name=YP_001534707.1;Parent=gene3413;Note=binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication%3B can also affect transcription of multiple genes including itself.;Dbxref=Genbank:YP_001534707.1,GeneID:5712431;gbkey=CDS;gene=dnaA;product=chromosomal replication initiation protein;protein_id=YP_001534707.1;transl_table=11
NC_009952.1	RefSeq	gene	3546223	3547341	.	+	.	ID=gene3414;Name=dnaN;Dbxref=GeneID:5712432;gbkey=Gene;gene=dnaN;locus_tag=Dshi_3374
NC_009952.1	RefSeq	CDS	3546223	3547341	.	+	0	ID=cds3365;Name=YP_001534708.1;Parent=gene3414;Note=binds the polymerase to DNA and acts as a sliding clamp;Dbxref=Genbank:YP_001534708.1,GeneID:5712432;gbkey=CDS;gene=dnaN;product=DNA polymerase III subunit beta;protein_id=YP_001534708.1;transl_table=11
NC_009952.1	RefSeq	gene	3547348	3548433	.	+	.	ID=gene3415;Name=recF;Dbxref=GeneID:5712433;gbkey=Gene;gene=recF;locus_tag=Dshi_3375
NC_009952.1	RefSeq	CDS	3547348	3548433	.	+	0	ID=cds3366;Name=YP_001534709.1;Parent=gene3415;Note=Required for DNA replication%3B binds preferentially to single-stranded%2C linear DNA;Dbxref=Genbank:YP_001534709.1,GeneID:5712433;gbkey=CDS;gene=recF;product=recombination protein F;protein_id=YP_001534709.1;transl_table=11
NC_009952.1	RefSeq	gene	3548430	3549533	.	-	.	ID=gene3416;Name=flgI;Dbxref=GeneID:5712434;gbkey=Gene;gene=flgI;locus_tag=Dshi_3376
NC_009952.1	RefSeq	CDS	3548430	3549533	.	-	0	ID=cds3367;Name=YP_001534710.1;Parent=gene3416;Note=part of the basal body which consists of four rings L%2C P%2C S%2C and M mounted on a central rod%3B Vibrio parahaemolyticus%2C Yersinia%2C Bradyrhizobium and other bacteria have two copies of this and other flagellar genes%3B the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum;Dbxref=Genbank:YP_001534710.1,GeneID:5712434;gbkey=CDS;gene=flgI;product=flagellar basal body P-ring protein;protein_id=YP_001534710.1;transl_table=11
NC_009952.1	RefSeq	gene	3549530	3550540	.	-	.	ID=gene3417;Name=flgL;Dbxref=GeneID:5712435;gbkey=Gene;gene=flgL;locus_tag=Dshi_3377
NC_009952.1	RefSeq	CDS	3549530	3550540	.	-	0	ID=cds3368;Name=YP_001534711.1;Parent=gene3417;Note=PFAM: Putative flagellar hook-associated protein 3 %28HAP3%29 KEGG: sil:SPO0194 flagellar hook-associated protein FlgL family protein;Dbxref=Genbank:YP_001534711.1,GeneID:5712435;gbkey=CDS;gene=flgL;product=flagellar hook-associated protein FlgL;protein_id=YP_001534711.1;transl_table=11
NC_009952.1	RefSeq	gene	3550543	3552000	.	-	.	ID=gene3418;Name=flgK;Dbxref=GeneID:5712436;gbkey=Gene;gene=flgK;locus_tag=Dshi_3378
NC_009952.1	RefSeq	CDS	3550543	3552000	.	-	0	ID=cds3369;Name=YP_001534712.1;Parent=gene3418;Note=with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook;Dbxref=Genbank:YP_001534712.1,GeneID:5712436;gbkey=CDS;gene=flgK;product=flagellar hook-associated protein FlgK;protein_id=YP_001534712.1;transl_table=11
NC_009952.1	RefSeq	gene	3552016	3553320	.	-	.	ID=gene3419;Name=flgE;Dbxref=GeneID:5712437;gbkey=Gene;gene=flgE;locus_tag=Dshi_3379
NC_009952.1	RefSeq	CDS	3552016	3553320	.	-	0	ID=cds3370;Name=YP_001534713.1;Parent=gene3419;Note=PFAM: flagellar basal body rod protein%3B protein of unknown function DUF1078 domain protein Swissprot: Flagellar hook protein flgE;Dbxref=Genbank:YP_001534713.1,GeneID:5712437;gbkey=CDS;gene=flgE;product=flagellar hook protein FlgE;protein_id=YP_001534713.1;transl_table=11
NC_009952.1	RefSeq	gene	3553404	3554222	.	-	.	ID=gene3420;Name=motB;Dbxref=GeneID:5712438;gbkey=Gene;gene=motB;locus_tag=Dshi_3380
NC_009952.1	RefSeq	CDS	3553404	3554222	.	-	0	ID=cds3371;Name=YP_001534714.1;Parent=gene3420;Note=PRK: motB%2C flagellar motor protein MotB COG: MotB%2C Flagellar motor protein REFSEQ: chemotaxis protein MotB;Dbxref=Genbank:YP_001534714.1,GeneID:5712438;gbkey=CDS;gene=motB;product=chemotaxis protein MotB;protein_id=YP_001534714.1;transl_table=11
NC_009952.1	RefSeq	gene	3554408	3556192	.	+	.	ID=gene3421;Name=Dshi_3381;Dbxref=GeneID:5712439;gbkey=Gene;locus_tag=Dshi_3381
NC_009952.1	RefSeq	CDS	3554408	3556192	.	+	0	ID=cds3372;Name=YP_001534715.1;Parent=gene3421;Note=PFAM: surface antigen %28D15%29%3B surface antigen variable number repeat protein KEGG: rde:RD1_2329 outer membrane protein%2C putative;Dbxref=Genbank:YP_001534715.1,GeneID:5712439;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534715.1;transl_table=11
NC_009952.1	RefSeq	gene	3556189	3559443	.	+	.	ID=gene3422;Name=Dshi_3382;Dbxref=GeneID:5712440;gbkey=Gene;locus_tag=Dshi_3382
NC_009952.1	RefSeq	CDS	3556189	3559443	.	+	0	ID=cds3373;Name=YP_001534716.1;Parent=gene3422;Note=PFAM: protein of unknown function DUF490 KEGG: jan:Jann_0244 protein of unknown function DUF490;Dbxref=Genbank:YP_001534716.1,GeneID:5712440;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534716.1;transl_table=11
NC_009952.1	RefSeq	gene	3559437	3560141	.	-	.	ID=gene3423;Name=Dshi_3383;Dbxref=GeneID:5712441;gbkey=Gene;locus_tag=Dshi_3383
NC_009952.1	RefSeq	CDS	3559437	3560141	.	-	0	ID=cds3374;Name=YP_001534717.1;Parent=gene3423;Note=PFAM: Rhomboid family protein KEGG: jan:Jann_4233 rhomboid-like protein;Dbxref=Genbank:YP_001534717.1,GeneID:5712441;gbkey=CDS;product=rhomboid family protein;protein_id=YP_001534717.1;transl_table=11
NC_009952.1	RefSeq	gene	3560203	3561804	.	-	.	ID=gene3424;Name=epsH;Dbxref=GeneID:5712442;gbkey=Gene;gene=epsH;locus_tag=Dshi_3384
NC_009952.1	RefSeq	CDS	3560203	3561804	.	-	0	ID=cds3375;Name=YP_001534718.1;Parent=gene3424;Note=TIGRFAM: eight transmembrane protein EpsH%3B Methanolan biosynthesis EpsI KEGG: jan:Jann_4271 hypothetical protein;Dbxref=Genbank:YP_001534718.1,GeneID:5712442;gbkey=CDS;gene=epsH;product=transmembrane exosortase;protein_id=YP_001534718.1;transl_table=11
NC_009952.1	RefSeq	gene	3561914	3564349	.	-	.	ID=gene3425;Name=Dshi_3385;Dbxref=GeneID:5712443;gbkey=Gene;locus_tag=Dshi_3385
NC_009952.1	RefSeq	CDS	3561914	3564349	.	-	0	ID=cds3376;Name=YP_001534719.1;Parent=gene3425;Note=PFAM: Tetratricopeptide TPR_4%3B Tetratricopeptide TPR_2 repeat protein SMART: Tetratricopeptide domain protein KEGG: jan:Jann_4236 tetratricopeptide TPR_2;Dbxref=Genbank:YP_001534719.1,GeneID:5712443;gbkey=CDS;product=tetratricopeptide;protein_id=YP_001534719.1;transl_table=11
NC_009952.1	RefSeq	gene	3564483	3564998	.	-	.	ID=gene3426;Name=wcaJ;Dbxref=GeneID:5712444;gbkey=Gene;gene=wcaJ;locus_tag=Dshi_3386
NC_009952.1	RefSeq	CDS	3564483	3564998	.	-	0	ID=cds3377;Name=YP_001534720.1;Parent=gene3426;Note=PFAM: sugar transferase KEGG: rde:RD1_B0024 bacterial sugar transferase%3B Galactosyl-P-P-undecaprenol synthetase;Dbxref=Genbank:YP_001534720.1,GeneID:5712444;gbkey=CDS;gene=wcaJ;product=undecaprenyl-phosphate galactose phosphotransferase;protein_id=YP_001534720.1;transl_table=11
NC_009952.1	RefSeq	gene	3565730	3566584	.	+	.	ID=gene3427;Name=exeA;Dbxref=GeneID:5712445;gbkey=Gene;gene=exeA;locus_tag=Dshi_3387
NC_009952.1	RefSeq	CDS	3565730	3566584	.	+	0	ID=cds3378;Name=YP_001534721.1;Parent=gene3427;Note=REFSEQ: general secretion pathway protein A %5BRoseobacter denitrificans%5D COG: Type II secretory pathway%2C component ExeA %28predicted ATPase%29 SMART: AAA ATPase KEGG: jan:Jann_4238 ATPase%3B component ExeA %28predicted ATPase%29;Dbxref=Genbank:YP_001534721.1,GeneID:5712445;gbkey=CDS;gene=exeA;product=Type II secretory pathway;protein_id=YP_001534721.1;transl_table=11
NC_009952.1	RefSeq	gene	3566584	3568110	.	+	.	ID=gene3428;Name=exeA;Dbxref=GeneID:5712446;gbkey=Gene;gene=exeA;locus_tag=Dshi_3388
NC_009952.1	RefSeq	CDS	3566584	3568110	.	+	0	ID=cds3379;Name=YP_001534722.1;Parent=gene3428;Note=TIGRFAM: polysaccharide chain length determinant protein%2C PEP-CTERM locus subfamily PFAM: lipopolysaccharide biosynthesis protein KEGG: jan:Jann_4239 lipopolysaccharide biosynthesis%3B PEP-CTERM locus subfamily;Dbxref=Genbank:YP_001534722.1,GeneID:5712446;gbkey=CDS;product=polysaccharide chain length determinant protein;protein_id=YP_001534722.1;transl_table=11
NC_009952.1	RefSeq	gene	3568158	3568988	.	+	.	ID=gene3429;Name=Dshi_3389;Dbxref=GeneID:5712447;gbkey=Gene;locus_tag=Dshi_3389
NC_009952.1	RefSeq	CDS	3568158	3568988	.	+	0	ID=cds3380;Name=YP_001534723.1;Parent=gene3429;Note=KEGG: jan:Jann_4240 ATPases involved in chromosome partitioning-like;Dbxref=Genbank:YP_001534723.1,GeneID:5712447;gbkey=CDS;product=chromosome partitioning ATPase;protein_id=YP_001534723.1;transl_table=11
NC_009952.1	RefSeq	gene	3568985	3569746	.	-	.	ID=gene3430;Name=Dshi_3390;Dbxref=GeneID:5712448;gbkey=Gene;locus_tag=Dshi_3390
NC_009952.1	RefSeq	CDS	3568985	3569746	.	-	0	ID=cds3381;Name=YP_001534724.1;Parent=gene3430;Note=PFAM: metallophosphoesterase KEGG: jan:Jann_3688 metallophosphoesterase;Dbxref=Genbank:YP_001534724.1,GeneID:5712448;gbkey=CDS;product=metallophosphoesterase;protein_id=YP_001534724.1;transl_table=11
NC_009952.1	RefSeq	gene	3569750	3570550	.	-	.	ID=gene3431;Name=Dshi_3391;Dbxref=GeneID:5712449;gbkey=Gene;locus_tag=Dshi_3391
NC_009952.1	RefSeq	CDS	3569750	3570550	.	-	0	ID=cds3382;Name=YP_001534725.1;Parent=gene3431;Note=PFAM: beta-lactamase domain protein KEGG: rde:RD1_3791 metallo-beta-lactamase family protein%2C putative;Dbxref=Genbank:YP_001534725.1,GeneID:5712449;gbkey=CDS;product=putative metallo-beta-lactamase family protein;protein_id=YP_001534725.1;transl_table=11
NC_009952.1	RefSeq	gene	3570547	3570837	.	-	.	ID=gene3432;Name=Dshi_3392;Dbxref=GeneID:5712450;gbkey=Gene;locus_tag=Dshi_3392
NC_009952.1	RefSeq	CDS	3570547	3570837	.	-	0	ID=cds3383;Name=YP_001534726.1;Parent=gene3432;Note=PFAM: Antibiotic biosynthesis monooxygenase KEGG: rde:RD1_3790 hypothetical protein;Dbxref=Genbank:YP_001534726.1,GeneID:5712450;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534726.1;transl_table=11
NC_009952.1	RefSeq	gene	3570952	3572025	.	+	.	ID=gene3433;Name=leuB;Dbxref=GeneID:5712451;gbkey=Gene;gene=leuB;locus_tag=Dshi_3393
NC_009952.1	RefSeq	CDS	3570952	3572025	.	+	0	ID=cds3384;Name=YP_001534727.1;Parent=gene3433;Note=PFAM: isocitrate%2Fisopropylmalate dehydrogenase KEGG: rde:RD1_3789 3-isopropylmalate dehydrogenase%3B 3-IPM-DH%3B IMDH%3B Beta-IPM dehydrogenase;Dbxref=Genbank:YP_001534727.1,GeneID:5712451;gbkey=CDS;gene=leuB;product=3-isopropylmalate dehydrogenase;protein_id=YP_001534727.1;transl_table=11
NC_009952.1	RefSeq	gene	3572022	3573032	.	+	.	ID=gene3434;Name=leuB;Dbxref=GeneID:5712452;gbkey=Gene;gene=leuB;locus_tag=Dshi_3394
NC_009952.1	RefSeq	CDS	3572022	3573032	.	+	0	ID=cds3385;Name=YP_001534728.1;Parent=gene3434;Note=PFAM: oxidoreductase domain protein%3B Oxidoreductase domain%3B homoserine dehydrogenase NAD-binding KEGG: rde:RD1_3788 probable NADH-dependent dyhydrogenase;Dbxref=Genbank:YP_001534728.1,GeneID:5712452;gbkey=CDS;product=oxidoreductase domain-containing protein;protein_id=YP_001534728.1;transl_table=11
NC_009952.1	RefSeq	gene	3573085	3574533	.	-	.	ID=gene3435;Name=dctM3;Dbxref=GeneID:5712453;gbkey=Gene;gene=dctM3;locus_tag=Dshi_3395
NC_009952.1	RefSeq	CDS	3573085	3574533	.	-	0	ID=cds3386;Name=YP_001534729.1;Parent=gene3435;Note=PFAM: Citrate transporter%3B TRAP C4-dicarboxylate transport system permease DctM subunit KEGG: cps:CPS_1266 putative C4-dicarboxylate transporter family protein%2C DctM subunit;Dbxref=Genbank:YP_001534729.1,GeneID:5712453;gbkey=CDS;gene=dctM3;product=TRAP dicarboxylate transporter subunit DctM;protein_id=YP_001534729.1;transl_table=11
NC_009952.1	RefSeq	gene	3574537	3575340	.	-	.	ID=gene3436;Name=dctQ2;Dbxref=GeneID:5712454;gbkey=Gene;gene=dctQ2;locus_tag=Dshi_3396
NC_009952.1	RefSeq	CDS	3574537	3575340	.	-	0	ID=cds3387;Name=YP_001534730.1;Parent=gene3436;Note=PFAM: Tripartite ATP-independent periplasmic transporter DctQ component KEGG: maq:Maqu_0086 tripartite ATP-independent periplasmic transporter%2C DctQ component;Dbxref=Genbank:YP_001534730.1,GeneID:5712454;gbkey=CDS;gene=dctQ2;product=TRAP dicarboxylate transporter subunit DctQ;protein_id=YP_001534730.1;transl_table=11
NC_009952.1	RefSeq	gene	3575429	3576475	.	-	.	ID=gene3437;Name=dctP2;Dbxref=GeneID:5712455;gbkey=Gene;gene=dctP2;locus_tag=Dshi_3397
NC_009952.1	RefSeq	CDS	3575429	3576475	.	-	0	ID=cds3388;Name=YP_001534731.1;Parent=gene3437;Note=PFAM: TRAP dicarboxylate transporter- DctP subunit KEGG: cps:CPS_1264 extracellular solute-binding protein%2C family 7%3B precursor;Dbxref=Genbank:YP_001534731.1,GeneID:5712455;gbkey=CDS;gene=dctP2;product=TRAP dicarboxylate transporter subunit DctP;protein_id=YP_001534731.1;transl_table=11
NC_009952.1	RefSeq	gene	3576583	3577113	.	-	.	ID=gene3438;Name=orfB;Dbxref=GeneID:5712456;gbkey=Gene;gene=orfB;locus_tag=Dshi_3398
NC_009952.1	RefSeq	CDS	3576583	3577113	.	-	0	ID=cds3389;Name=YP_001534732.1;Parent=gene3438;Note=KEGG: nha:Nham_4013 ISSpo6%2C transposase OrfB%3B transposase OrfB;Dbxref=Genbank:YP_001534732.1,GeneID:5712456;gbkey=CDS;gene=orfB;product=ISSpo6;protein_id=YP_001534732.1;transl_table=11
NC_009952.1	RefSeq	gene	3577175	3577537	.	-	.	ID=gene3439;Name=orfA;Dbxref=GeneID:5712457;gbkey=Gene;gene=orfA;locus_tag=Dshi_3399
NC_009952.1	RefSeq	CDS	3577175	3577537	.	-	0	ID=cds3390;Name=YP_001534733.1;Parent=gene3439;Note=KEGG: nha:Nham_4014 ISSpo6%2C transposase orf A%3B transposase OrfA;Dbxref=Genbank:YP_001534733.1,GeneID:5712457;gbkey=CDS;gene=orfA;product=ISSpo6;protein_id=YP_001534733.1;transl_table=11
NC_009952.1	RefSeq	gene	3577798	3578496	.	-	.	ID=gene3440;Name=ubiG2;Dbxref=GeneID:5712458;gbkey=Gene;gene=ubiG2;locus_tag=Dshi_3400
NC_009952.1	RefSeq	CDS	3577798	3578496	.	-	0	ID=cds3391;Name=YP_001534734.1;Parent=gene3440;Note=KEGG: rde:RD1_0737 3-demethylubiquinone-9 3-methyltransferase TIGRFAM: ubiquinone biosynthesis O-methyltransferase PFAM: Methyltransferase type 11%3B Methyltransferase type 12%3B %283%2C4-dihydroxy-5-hexaprenylbenzoate methyltransferase%29 %28DHHB methyltransferase%29;Dbxref=Genbank:YP_001534734.1,GeneID:5712458;gbkey=CDS;gene=ubiG2;product=3-demethylubiquinone-9 3-methyltransferase;protein_id=YP_001534734.1;transl_table=11
NC_009952.1	RefSeq	gene	3578510	3579325	.	-	.	ID=gene3441;Name=Dshi_3401;Dbxref=GeneID:5712459;gbkey=Gene;locus_tag=Dshi_3401
NC_009952.1	RefSeq	CDS	3578510	3579325	.	-	0	ID=cds3392;Name=YP_001534735.1;Parent=gene3441;Note=KEGG: rde:RD1_0738 hypothetical protein;Dbxref=Genbank:YP_001534735.1,GeneID:5712459;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534735.1;transl_table=11
NC_009952.1	RefSeq	gene	3579372	3580727	.	-	.	ID=gene3442;Name=Dshi_3402;Dbxref=GeneID:5712460;gbkey=Gene;locus_tag=Dshi_3402
NC_009952.1	RefSeq	CDS	3579372	3580727	.	-	0	ID=cds3393;Name=YP_001534736.1;Parent=gene3442;Note=KEGG: rsp:RSP_0230 neutral zinc metallopeptidase CD: Zinc-dependent metalloprotease%2C serralysin_like subfamily;Dbxref=Genbank:YP_001534736.1,GeneID:5712460;gbkey=CDS;product=neutral zinc metallopeptidase;protein_id=YP_001534736.1;transl_table=11
NC_009952.1	RefSeq	gene	3580985	3582724	.	-	.	ID=gene3443;Name=Dshi_3403;Dbxref=GeneID:5712461;gbkey=Gene;locus_tag=Dshi_3403
NC_009952.1	RefSeq	CDS	3580985	3582724	.	-	0	ID=cds3394;Name=YP_001534737.1;Parent=gene3443;Note=PFAM: AMP-dependent synthetase and ligase KEGG: rde:RD1_1106 putative long chain fatty acid acyl-CoA ligase;Dbxref=Genbank:YP_001534737.1,GeneID:5712461;gbkey=CDS;product=acyl-CoA synthetase;protein_id=YP_001534737.1;transl_table=11
NC_009952.1	RefSeq	gene	3582924	3583157	.	+	.	ID=gene3444;Name=Dshi_3404;Dbxref=GeneID:5712462;gbkey=Gene;locus_tag=Dshi_3404
NC_009952.1	RefSeq	CDS	3582924	3583157	.	+	0	ID=cds3395;Name=YP_001534738.1;Parent=gene3444;Note=KEGG: mpt:Mpe_A3536 hypothetical protein;Dbxref=Genbank:YP_001534738.1,GeneID:5712462;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534738.1;transl_table=11
NC_009952.1	RefSeq	gene	3583162	3583923	.	-	.	ID=gene3445;Name=dsbA2;Dbxref=GeneID:5712463;gbkey=Gene;gene=dsbA2;locus_tag=Dshi_3405
NC_009952.1	RefSeq	CDS	3583162	3583923	.	-	0	ID=cds3396;Name=YP_001534739.1;Parent=gene3445;Note=PFAM: DSBA oxidoreductase;Dbxref=Genbank:YP_001534739.1,GeneID:5712463;gbkey=CDS;gene=dsbA2;product=thiol:disulfide interchange protein DsbA;protein_id=YP_001534739.1;transl_table=11
NC_009952.1	RefSeq	gene	3584144	3584692	.	+	.	ID=gene3446;Name=Dshi_3406;Dbxref=GeneID:5712464;gbkey=Gene;locus_tag=Dshi_3406
NC_009952.1	RefSeq	CDS	3584144	3584692	.	+	0	ID=cds3397;Name=YP_001534740.1;Parent=gene3446;Note=PFAM: ErfK%2FYbiS%2FYcfS%2FYnhG family protein KEGG: mes:Meso_4112 ErfK%2FYbiS%2FYcfS%2FYnhG;Dbxref=Genbank:YP_001534740.1,GeneID:5712464;gbkey=CDS;product=ErfK%2FYbiS%2FYcfS%2FYnhG family protein;protein_id=YP_001534740.1;transl_table=11
NC_009952.1	RefSeq	gene	3584847	3586958	.	+	.	ID=gene3447;Name=dsbD;Dbxref=GeneID:5712465;gbkey=Gene;gene=dsbD;locus_tag=Dshi_3407
NC_009952.1	RefSeq	CDS	3584847	3586958	.	+	0	ID=cds3398;Name=YP_001534741.1;Parent=gene3447;Note=KEGG: mag:amb3382 thiol:disulfide interchange protein DsbD 1 precursor;Dbxref=Genbank:YP_001534741.1,GeneID:5712465;gbkey=CDS;gene=dsbD;product=thiol:disulfide interchange protein DsbD;protein_id=YP_001534741.1;transl_table=11
NC_009952.1	RefSeq	gene	3586961	3588142	.	-	.	ID=gene3448;Name=cycH;Dbxref=GeneID:5712466;gbkey=Gene;gene=cycH;locus_tag=Dshi_3408
NC_009952.1	RefSeq	CDS	3586961	3588142	.	-	0	ID=cds3399;Name=YP_001534742.1;Parent=gene3448;Note=PFAM: TPR repeat-containing protein SMART: Tetratricopeptide domain protein KEGG: ret:RHE_CH01289 cytochrome-C-type biogenesis protein;Dbxref=Genbank:YP_001534742.1,GeneID:5712466;gbkey=CDS;gene=cycH;product=cytochrome c-type biogenesis protein CycH;protein_id=YP_001534742.1;transl_table=11
NC_009952.1	RefSeq	gene	3588139	3588624	.	-	.	ID=gene3449;Name=cycL;Dbxref=GeneID:5712467;gbkey=Gene;gene=cycL;locus_tag=Dshi_3409
NC_009952.1	RefSeq	CDS	3588139	3588624	.	-	0	ID=cds3400;Name=YP_001534743.1;Parent=gene3449;Note=PFAM: cytochrome C biogenesis protein KEGG: rsh:Rsph17029_1291 cytochrome c biogenesis protein;Dbxref=Genbank:YP_001534743.1,GeneID:5712467;gbkey=CDS;gene=cycL;product=cytochrome c-type biogenesis protein CycL;protein_id=YP_001534743.1;transl_table=11
NC_009952.1	RefSeq	gene	3588621	3589190	.	-	.	ID=gene3450;Name=dsbE;Dbxref=GeneID:5712468;gbkey=Gene;gene=dsbE;locus_tag=Dshi_3410
NC_009952.1	RefSeq	CDS	3588621	3589190	.	-	0	ID=cds3401;Name=YP_001534744.1;Parent=gene3450;Note=TIGRFAM: periplasmic protein thiol--disulphide oxidoreductase DsbE PFAM: alkyl hydroperoxide reductase%2F Thiol specific antioxidant%2F Mal allergen%3B Redoxin domain protein KEGG: mes:Meso_3362 periplasmic protein thiol--disulphide oxidoreductase DsbE;Dbxref=Genbank:YP_001534744.1,GeneID:5712468;gbkey=CDS;gene=dsbE;product=thiol:disulfide interchange protein DsbE;protein_id=YP_001534744.1;transl_table=11
NC_009952.1	RefSeq	gene	3589195	3591189	.	-	.	ID=gene3451;Name=cycK;Dbxref=GeneID:5712469;gbkey=Gene;gene=cycK;locus_tag=Dshi_3411
NC_009952.1	RefSeq	CDS	3589195	3591189	.	-	0	ID=cds3402;Name=YP_001534745.1;Parent=gene3451;Note=TIGRFAM: cytochrome c-type biogenesis protein CcmF PFAM: cytochrome c assembly protein KEGG: mag:amb4200 cytochrome c biogenesis factor;Dbxref=Genbank:YP_001534745.1,GeneID:5712469;gbkey=CDS;gene=cycK;product=cytochrome c-type biogenesis protein CycK;protein_id=YP_001534745.1;transl_table=11
NC_009952.1	RefSeq	gene	3591397	3591816	.	-	.	ID=gene3452;Name=Dshi_3412;Dbxref=GeneID:5712470;gbkey=Gene;locus_tag=Dshi_3412
NC_009952.1	RefSeq	CDS	3591397	3591816	.	-	0	ID=cds3403;Name=YP_001534746.1;Parent=gene3452;Note=PFAM: protein of unknown function DUF55;Dbxref=Genbank:YP_001534746.1,GeneID:5712470;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534746.1;transl_table=11
NC_009952.1	RefSeq	gene	3591816	3592088	.	-	.	ID=gene3453;Name=Dshi_3413;Dbxref=GeneID:5712471;gbkey=Gene;locus_tag=Dshi_3413
NC_009952.1	RefSeq	CDS	3591816	3592088	.	-	0	ID=cds3404;Name=YP_001534747.1;Parent=gene3453;Note=PFAM: YCII-related KEGG: rde:RD1_0468 YCII-related domain protein;Dbxref=Genbank:YP_001534747.1,GeneID:5712471;gbkey=CDS;product=YCII-like domain-containing protein;protein_id=YP_001534747.1;transl_table=11
NC_009952.1	RefSeq	gene	3592090	3593052	.	-	.	ID=gene3454;Name=gpsA;Dbxref=GeneID:5712472;gbkey=Gene;gene=gpsA;locus_tag=Dshi_3414
NC_009952.1	RefSeq	CDS	3592090	3593052	.	-	0	ID=cds3405;Name=YP_001534748.1;Parent=gene3454;Note=catalyzes the NAD%28P%29H-dependent reduction of glycerol 3-phosphate to glycerone phosphate;Dbxref=Genbank:YP_001534748.1,GeneID:5712472;gbkey=CDS;gene=gpsA;product=NAD%28P%29H-dependent glycerol-3-phosphate dehydrogenase;protein_id=YP_001534748.1;transl_table=11
NC_009952.1	RefSeq	gene	3593049	3594119	.	-	.	ID=gene3455;Name=gcp;Dbxref=GeneID:5712473;gbkey=Gene;gene=gcp;locus_tag=Dshi_3415
NC_009952.1	RefSeq	CDS	3593049	3594119	.	-	0	ID=cds3406;Name=YP_001534749.1;Parent=gene3455;Note=in most organisms%2C only the N-terminal domain is present in a single polypeptide%3B in some archaea this domain is fused to a kinase domain%3B this gene is essential for growth in Escherichia coli and Bacillus subtilis%3B the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins%3B the Pyrococcus structure shows DNA-binding properties%2C iron-binding%2C ATP-binding%2C and AP endonuclease activity;Dbxref=Genbank:YP_001534749.1,GeneID:5712473;gbkey=CDS;gene=gcp;product=putative DNA-binding%2Firon metalloprotein%2FAP endonuclease;protein_id=YP_001534749.1;transl_table=11
NC_009952.1	RefSeq	gene	3594171	3594887	.	+	.	ID=gene3456;Name=hemD;Dbxref=GeneID:5712474;gbkey=Gene;gene=hemD;locus_tag=Dshi_3416
NC_009952.1	RefSeq	CDS	3594171	3594887	.	+	0	ID=cds3407;Name=YP_001534750.1;Parent=gene3456;Note=PFAM: Uroporphyrinogen III synthase HEM4 KEGG: rsq:Rsph17025_2913 uroporphyrinogen III synthase HEM4%3B Hydroxymethylbilane hydrolyase %5Bcyclizing%5D%3B Uroporphyrinogen-III cosynthetase%3B UROS;Dbxref=Genbank:YP_001534750.1,GeneID:5712474;gbkey=CDS;gene=hemD;product=uroporphyrinogen-III synthase;protein_id=YP_001534750.1;transl_table=11
NC_009952.1	RefSeq	gene	3594961	3596388	.	+	.	ID=gene3457;Name=Dshi_3417;Dbxref=GeneID:5712475;gbkey=Gene;locus_tag=Dshi_3417
NC_009952.1	RefSeq	CDS	3594961	3596388	.	+	0	ID=cds3408;Name=YP_001534751.1;Parent=gene3457;Note=KEGG: jan:Jann_4082 hypothetical protein;Dbxref=Genbank:YP_001534751.1,GeneID:5712475;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534751.1;transl_table=11
NC_009952.1	RefSeq	gene	3596399	3597907	.	+	.	ID=gene3458;Name=Dshi_3418;Dbxref=GeneID:5712476;gbkey=Gene;locus_tag=Dshi_3418
NC_009952.1	RefSeq	CDS	3596399	3597907	.	+	0	ID=cds3409;Name=YP_001534752.1;Parent=gene3458;Note=PFAM: HemY domain protein;Dbxref=Genbank:YP_001534752.1,GeneID:5712476;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534752.1;transl_table=11
NC_009952.1	RefSeq	gene	3597982	3599307	.	-	.	ID=gene3459;Name=Dshi_3419;Dbxref=GeneID:5712477;gbkey=Gene;locus_tag=Dshi_3419
NC_009952.1	RefSeq	CDS	3597982	3599307	.	-	0	ID=cds3410;Name=YP_001534753.1;Parent=gene3459;Note=PFAM: Amidase KEGG: rsq:Rsph17025_3870 2-alkenal reductase;Dbxref=Genbank:YP_001534753.1,GeneID:5712477;gbkey=CDS;product=amidase;protein_id=YP_001534753.1;transl_table=11
NC_009952.1	RefSeq	gene	3599365	3600924	.	+	.	ID=gene3460;Name=glpK;Dbxref=GeneID:5712478;gbkey=Gene;gene=glpK;locus_tag=Dshi_3420
NC_009952.1	RefSeq	CDS	3599365	3600924	.	+	0	ID=cds3411;Name=YP_001534754.1;Parent=gene3460;Note=TIGRFAM: glycerol kinase PFAM: carbohydrate kinase FGGY KEGG: rde:RD1_2883 glycerol kinase%3B GK%3B Glycerokinase%3B ATP:glycerol 3-phosphotransferase;Dbxref=Genbank:YP_001534754.1,GeneID:5712478;gbkey=CDS;gene=glpK;product=glycerol kinase;protein_id=YP_001534754.1;transl_table=11
NC_009952.1	RefSeq	gene	3601513	3603003	.	-	.	ID=gene3461;Name=apr;Dbxref=GeneID:5712479;gbkey=Gene;gene=apr;locus_tag=Dshi_3421
NC_009952.1	RefSeq	CDS	3601513	3603003	.	-	0	ID=cds3412;Name=YP_001534755.1;Parent=gene3461;Note=Hydrolysis of proteins with broad specificity for peptide bonds%2C and a preference for a large uncharged residue in P1. Hydrolyses peptide amides;Dbxref=Genbank:YP_001534755.1,GeneID:5712479;gbkey=CDS;gene=apr;product=subtilisin DY;protein_id=YP_001534755.1;transl_table=11
NC_009952.1	RefSeq	gene	3603000	3603596	.	-	.	ID=gene3462;Name=apr;Dbxref=GeneID:5712480;gbkey=Gene;gene=apr;locus_tag=Dshi_3422
NC_009952.1	RefSeq	CDS	3603000	3603596	.	-	0	ID=cds3413;Name=YP_001534756.1;Parent=gene3462;Note=no hits to other proteins;Dbxref=Genbank:YP_001534756.1,GeneID:5712480;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534756.1;transl_table=11
NC_009952.1	RefSeq	gene	3603596	3604171	.	-	.	ID=gene3463;Name=rpoE1;Dbxref=GeneID:5712481;gbkey=Gene;gene=rpoE1;locus_tag=Dshi_3423
NC_009952.1	RefSeq	CDS	3603596	3604171	.	-	0	ID=cds3414;Name=YP_001534757.1;Parent=gene3463;Note=TIGRFAM: RNA polymerase sigma-70 PFAM: sigma-70 region 2 domain protein%3B sigma-70 region 4 domain protein%3B Sigma-70 region 4 type 2%3B %28sigma-70 factor family%2C ECF subfamily%29;Dbxref=Genbank:YP_001534757.1,GeneID:5712481;gbkey=CDS;gene=rpoE1;product=RNA polymerase sigma factor;protein_id=YP_001534757.1;transl_table=11
NC_009952.1	RefSeq	gene	3604171	3605991	.	-	.	ID=gene3464;Name=rpoE1;Dbxref=GeneID:5712482;gbkey=Gene;gene=rpoE1;locus_tag=Dshi_3424
NC_009952.1	RefSeq	CDS	3604171	3605991	.	-	0	ID=cds3415;Name=YP_001534758.1;Parent=gene3464;Note=no significant BLAST hits%2C GC frame plot ok;Dbxref=Genbank:YP_001534758.1,GeneID:5712482;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534758.1;transl_table=11
NC_009952.1	RefSeq	gene	3606501	3606842	.	-	.	ID=gene3465;Name=Dshi_3425;Dbxref=GeneID:5712483;gbkey=Gene;locus_tag=Dshi_3425
NC_009952.1	RefSeq	CDS	3606501	3606842	.	-	0	ID=cds3416;Name=YP_001534759.1;Parent=gene3465;Note=KEGG: sil:SPO3859 hypothetical protein;Dbxref=Genbank:YP_001534759.1,GeneID:5712483;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534759.1;transl_table=11
NC_009952.1	RefSeq	gene	3607055	3608443	.	-	.	ID=gene3466;Name=ahcY;Dbxref=GeneID:5712484;gbkey=Gene;gene=ahcY;locus_tag=Dshi_3426
NC_009952.1	RefSeq	CDS	3607055	3608443	.	-	0	ID=cds3417;Name=YP_001534760.1;Parent=gene3466;Note=catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine;Dbxref=Genbank:YP_001534760.1,GeneID:5712484;gbkey=CDS;gene=ahcY;product=S-adenosyl-L-homocysteine hydrolase;protein_id=YP_001534760.1;transl_table=11
NC_009952.1	RefSeq	gene	3608567	3609595	.	+	.	ID=gene3467;Name=rafI;Dbxref=GeneID:5712485;gbkey=Gene;gene=rafI;locus_tag=Dshi_3427
NC_009952.1	RefSeq	CDS	3608567	3609595	.	+	0	ID=cds3418;Name=YP_001534761.1;Parent=gene3467;Note=PFAM: glycosyl transferase family 8 KEGG: rde:RD1_0464 lipopolysaccharide 1%2C3-galactosyltransferase%2C putative%3B 3-galactosyltransferase%2C %28Lipopolysaccharide 3-alpha-galactosyltransferase%29;Dbxref=Genbank:YP_001534761.1,GeneID:5712485;gbkey=CDS;gene=rafI;product=lipopolysaccharide 1;protein_id=YP_001534761.1;transl_table=11
NC_009952.1	RefSeq	gene	3609608	3609898	.	-	.	ID=gene3468;Name=Dshi_3428;Dbxref=GeneID:5712486;gbkey=Gene;locus_tag=Dshi_3428
NC_009952.1	RefSeq	CDS	3609608	3609898	.	-	0	ID=cds3419;Name=YP_001534762.1;Parent=gene3468;Note=no hits to other proteins;Dbxref=Genbank:YP_001534762.1,GeneID:5712486;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534762.1;transl_table=11
NC_009952.1	RefSeq	gene	3610138	3610746	.	+	.	ID=gene3469;Name=Dshi_3429;Dbxref=GeneID:5712487;gbkey=Gene;locus_tag=Dshi_3429
NC_009952.1	RefSeq	CDS	3610138	3610746	.	+	0	ID=cds3420;Name=YP_001534763.1;Parent=gene3469;Note=PFAM: HD domain KEGG: sit:TM1040_2836 metal dependent phosphohydrolase;Dbxref=Genbank:YP_001534763.1,GeneID:5712487;gbkey=CDS;product=metal dependent phosphohydrolase;protein_id=YP_001534763.1;transl_table=11
NC_009952.1	RefSeq	gene	3610863	3611417	.	-	.	ID=gene3470;Name=regA;Dbxref=GeneID:5712488;gbkey=Gene;gene=regA;locus_tag=Dshi_3430
NC_009952.1	RefSeq	CDS	3610863	3611417	.	-	0	ID=cds3421;Name=YP_001534764.1;Parent=gene3470;Note=PFAM: response regulator receiver KEGG: sil:SPO3865 photosynthetic apparatus regulatory protein RegA%3B Response regulator PrrA;Dbxref=Genbank:YP_001534764.1,GeneID:5712488;gbkey=CDS;gene=regA;product=photosynthetic apparatus regulatory protein RegA;protein_id=YP_001534764.1;transl_table=11
NC_009952.1	RefSeq	gene	3611501	3612121	.	-	.	ID=gene3471;Name=senC;Dbxref=GeneID:5712489;gbkey=Gene;gene=senC;locus_tag=Dshi_3431
NC_009952.1	RefSeq	CDS	3611501	3612121	.	-	0	ID=cds3422;Name=YP_001534765.1;Parent=gene3471;Note=PFAM: electron transport protein SCO1%2FSenC KEGG: sit:TM1040_2839 electron transport protein SCO1%2FSenC;Dbxref=Genbank:YP_001534765.1,GeneID:5712489;gbkey=CDS;gene=senC;product=regulatory protein SenC;protein_id=YP_001534765.1;transl_table=11
NC_009952.1	RefSeq	gene	3612224	3613615	.	+	.	ID=gene3472;Name=regB;Dbxref=GeneID:5712490;gbkey=Gene;gene=regB;locus_tag=Dshi_3432
NC_009952.1	RefSeq	CDS	3612224	3613615	.	+	0	ID=cds3423;Name=YP_001534766.1;Parent=gene3472;Note=PFAM: ATP-binding region ATPase domain protein%3B histidine kinase A domain protein KEGG: sil:SPO3867 sensor histidine kinase RegB%3B Protein PrrB;Dbxref=Genbank:YP_001534766.1,GeneID:5712490;gbkey=CDS;gene=regB;product=sensor histidine kinase RegB;protein_id=YP_001534766.1;transl_table=11
NC_009952.1	RefSeq	gene	3613670	3614974	.	+	.	ID=gene3473;Name=Dshi_3433;Dbxref=GeneID:5712491;gbkey=Gene;locus_tag=Dshi_3433
NC_009952.1	RefSeq	CDS	3613670	3614974	.	+	0	ID=cds3424;Name=YP_001534767.1;Parent=gene3473;Note=TIGRFAM: PAS domain S-box REFSEQ: PAS domain containing protein;Dbxref=Genbank:YP_001534767.1,GeneID:5712491;gbkey=CDS;product=putative PAS%2FPAC sensor protein;protein_id=YP_001534767.1;transl_table=11
NC_009952.1	RefSeq	gene	3615034	3615531	.	+	.	ID=gene3474;Name=Dshi_3434;Dbxref=GeneID:5712492;gbkey=Gene;locus_tag=Dshi_3434
NC_009952.1	RefSeq	CDS	3615034	3615531	.	+	0	ID=cds3425;Name=YP_001534768.1;Parent=gene3474;Note=PFAM: protein of unknown function UPF0079 KEGG: rsq:Rsph17025_2955 protein of unknown function UPF0079;Dbxref=Genbank:YP_001534768.1,GeneID:5712492;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534768.1;transl_table=11
NC_009952.1	RefSeq	gene	3615528	3616526	.	+	.	ID=gene3475;Name=Dshi_3435;Dbxref=GeneID:5712493;gbkey=Gene;locus_tag=Dshi_3435
NC_009952.1	RefSeq	CDS	3615528	3616526	.	+	0	ID=cds3426;Name=YP_001534769.1;Parent=gene3475;Note=PFAM: aminoglycoside phosphotransferase KEGG: rsh:Rsph17029_0175 aminoglycoside phosphotransferase;Dbxref=Genbank:YP_001534769.1,GeneID:5712493;gbkey=CDS;product=aminoglycoside phosphotransferase;protein_id=YP_001534769.1;transl_table=11
NC_009952.1	RefSeq	gene	3616511	3617194	.	+	.	ID=gene3476;Name=Dshi_3436;Dbxref=GeneID:5712494;gbkey=Gene;locus_tag=Dshi_3436
NC_009952.1	RefSeq	CDS	3616511	3617194	.	+	0	ID=cds3427;Name=YP_001534770.1;Parent=gene3476;Note=PFAM: Nucleotidyl transferase KEGG: pde:Pden_2796 nucleotidyl transferase;Dbxref=Genbank:YP_001534770.1,GeneID:5712494;gbkey=CDS;product=nucleotidyl transferase;protein_id=YP_001534770.1;transl_table=11
NC_009952.1	RefSeq	gene	3617191	3620157	.	+	.	ID=gene3477;Name=addB;Dbxref=GeneID:5712495;gbkey=Gene;gene=addB;locus_tag=Dshi_3437
NC_009952.1	RefSeq	CDS	3617191	3620157	.	+	0	ID=cds3428;Name=YP_001534771.1;Parent=gene3477;Note=TIGRFAM: Double-strand break repair protein AddB KEGG: rsq:Rsph17025_2952 RecB family exonuclease-like protein PMID: 15547262;Dbxref=Genbank:YP_001534771.1,GeneID:5712495;gbkey=CDS;gene=addB;product=double-strand break repair helicase AddB;protein_id=YP_001534771.1;transl_table=11
NC_009952.1	RefSeq	gene	3620154	3623531	.	+	.	ID=gene3478;Name=addA;Dbxref=GeneID:5712496;gbkey=Gene;gene=addA;locus_tag=Dshi_3438
NC_009952.1	RefSeq	CDS	3620154	3623531	.	+	0	ID=cds3429;Name=YP_001534772.1;Parent=gene3478;Note=TIGRFAM: Double-strand break repair helicase AddA PFAM: UvrD%2FREP helicase KEGG: rsp:RSP_1527 helicase%2C UvrD%2FRep family PMID: 15547262;Dbxref=Genbank:YP_001534772.1,GeneID:5712496;gbkey=CDS;gene=addA;product=double-strand break repair helicase AddA;protein_id=YP_001534772.1;transl_table=11
NC_009952.1	RefSeq	gene	3623597	3623917	.	+	.	ID=gene3479;Name=trxA1;Dbxref=GeneID:5712497;gbkey=Gene;gene=trxA1;locus_tag=Dshi_3439
NC_009952.1	RefSeq	CDS	3623597	3623917	.	+	0	ID=cds3430;Name=YP_001534773.1;Parent=gene3479;Note=TIGRFAM: thioredoxin PFAM: Thioredoxin domain KEGG: rde:RD1_0451 thioredoxin%3B Trx;Dbxref=Genbank:YP_001534773.1,GeneID:5712497;gbkey=CDS;gene=trxA1;product=thioredoxin;protein_id=YP_001534773.1;transl_table=11
NC_009952.1	RefSeq	gene	3624024	3624581	.	+	.	ID=gene3480;Name=hslV;Dbxref=GeneID:5712498;gbkey=Gene;gene=hslV;locus_tag=Dshi_3440
NC_009952.1	RefSeq	CDS	3624024	3624581	.	+	0	ID=cds3431;Name=YP_001534774.1;Parent=gene3480;Note=heat shock protein involved in degradation of misfolded proteins;Dbxref=Genbank:YP_001534774.1,GeneID:5712498;gbkey=CDS;gene=hslV;product=ATP-dependent protease peptidase subunit;protein_id=YP_001534774.1;transl_table=11
NC_009952.1	RefSeq	gene	3624650	3625963	.	+	.	ID=gene3481;Name=hslU;Dbxref=GeneID:5712499;gbkey=Gene;gene=hslU;locus_tag=Dshi_3441
NC_009952.1	RefSeq	CDS	3624650	3625963	.	+	0	ID=cds3432;Name=YP_001534775.1;Parent=gene3481;Note=heat shock protein involved in degradation of misfolded proteins;Dbxref=Genbank:YP_001534775.1,GeneID:5712499;gbkey=CDS;gene=hslU;product=ATP-dependent protease ATP-binding subunit HslU;protein_id=YP_001534775.1;transl_table=11
NC_009952.1	RefSeq	gene	3626001	3627206	.	+	.	ID=gene3482;Name=Dshi_3442;Dbxref=GeneID:5712500;gbkey=Gene;locus_tag=Dshi_3442
NC_009952.1	RefSeq	CDS	3626001	3627206	.	+	0	ID=cds3433;Name=YP_001534776.1;Parent=gene3482;Note=PFAM: major facilitator superfamily MFS_1 KEGG: sit:TM1040_0930 major facilitator superfamily MFS_1;Dbxref=Genbank:YP_001534776.1,GeneID:5712500;gbkey=CDS;product=major facilitator superfamily %28MFS%29 transporter;protein_id=YP_001534776.1;transl_table=11
NC_009952.1	RefSeq	gene	3627203	3627796	.	-	.	ID=gene3483;Name=Dshi_3443;Dbxref=GeneID:5712501;gbkey=Gene;locus_tag=Dshi_3443
NC_009952.1	RefSeq	CDS	3627203	3627796	.	-	0	ID=cds3434;Name=YP_001534777.1;Parent=gene3483;Note=PFAM: Smr protein%2FMutS2 KEGG: rde:RD1_0446 Smr domain protein;Dbxref=Genbank:YP_001534777.1,GeneID:5712501;gbkey=CDS;product=Smr protein%2FMutS2;protein_id=YP_001534777.1;transl_table=11
NC_009952.1	RefSeq	gene	3627798	3628826	.	-	.	ID=gene3484;Name=mltA;Dbxref=GeneID:5712502;gbkey=Gene;gene=mltA;locus_tag=Dshi_3444
NC_009952.1	RefSeq	CDS	3627798	3628826	.	-	0	ID=cds3435;Name=YP_001534778.1;Parent=gene3484;Note=PFAM: MltA domain protein%3B 3D domain protein KEGG: jan:Jann_0190 MltA;Dbxref=Genbank:YP_001534778.1,GeneID:5712502;gbkey=CDS;gene=mltA;product=membrane-bound lytic murein transglycosylase A;protein_id=YP_001534778.1;transl_table=11
NC_009952.1	RefSeq	gene	3628823	3629488	.	-	.	ID=gene3485;Name=mltA;Dbxref=GeneID:5712503;gbkey=Gene;gene=mltA;locus_tag=Dshi_3445
NC_009952.1	RefSeq	CDS	3628823	3629488	.	-	0	ID=cds3436;Name=YP_001534779.1;Parent=gene3485;Note=PFAM: import inner membrane translocase subunit Tim44 KEGG: jan:Jann_0191 import inner membrane translocase%2C subunit Tim44%3B subunit Tim44;Dbxref=Genbank:YP_001534779.1,GeneID:5712503;gbkey=CDS;product=import inner membrane translocase;protein_id=YP_001534779.1;transl_table=11
NC_009952.1	RefSeq	gene	3629595	3630086	.	+	.	ID=gene3486;Name=fxsA;Dbxref=GeneID:5712504;gbkey=Gene;gene=fxsA;locus_tag=Dshi_3446
NC_009952.1	RefSeq	CDS	3629595	3630086	.	+	0	ID=cds3437;Name=YP_001534780.1;Parent=gene3486;Note=PFAM: FxsA cytoplasmic membrane protein KEGG: sil:SPO3887 FxsA;Dbxref=Genbank:YP_001534780.1,GeneID:5712504;gbkey=CDS;gene=fxsA;product=FxsA cytoplasmic membrane protein;protein_id=YP_001534780.1;transl_table=11
NC_009952.1	RefSeq	gene	3630144	3630662	.	+	.	ID=gene3487;Name=secB;Dbxref=GeneID:5712505;gbkey=Gene;gene=secB;locus_tag=Dshi_3447
NC_009952.1	RefSeq	CDS	3630144	3630662	.	+	0	ID=cds3438;Name=YP_001534781.1;Parent=gene3487;Note=molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm%3B in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA;Dbxref=Genbank:YP_001534781.1,GeneID:5712505;gbkey=CDS;gene=secB;product=preprotein translocase subunit SecB;protein_id=YP_001534781.1;transl_table=11
NC_009952.1	RefSeq	gene	3630667	3631359	.	-	.	ID=gene3488;Name=dnaQ1;Dbxref=GeneID:5712506;gbkey=Gene;gene=dnaQ1;locus_tag=Dshi_3448
NC_009952.1	RefSeq	CDS	3630667	3631359	.	-	0	ID=cds3439;Name=YP_001534782.1;Parent=gene3488;Note=KEGG: rsq:Rsph17025_2673 DNA polymerase III%2C epsilon subunit TIGRFAM: DNA polymerase III%2C epsilon subunit PFAM: Exonuclease RNase T and DNA polymerase III SMART: Exonuclease;Dbxref=Genbank:YP_001534782.1,GeneID:5712506;gbkey=CDS;gene=dnaQ1;product=DNA polymerase III subunit epsilon;protein_id=YP_001534782.1;transl_table=11
NC_009952.1	RefSeq	gene	3631352	3631948	.	-	.	ID=gene3489;Name=coaE;Dbxref=GeneID:5712507;gbkey=Gene;gene=coaE;locus_tag=Dshi_3449
NC_009952.1	RefSeq	CDS	3631352	3631948	.	-	0	ID=cds3440;Name=YP_001534783.1;Parent=gene3489;Note=KEGG: pde:Pden_2814 dephospho-CoA kinase TIGRFAM: dephospho-CoA kinase PFAM: Dephospho-CoA kinase%3B Dephosphocoenzyme A kinase;Dbxref=Genbank:YP_001534783.1,GeneID:5712507;gbkey=CDS;gene=coaE;product=dephospho-CoA kinase;protein_id=YP_001534783.1;transl_table=11
NC_009952.1	RefSeq	gene	3631945	3632781	.	-	.	ID=gene3490;Name=aroE;Dbxref=GeneID:5712508;gbkey=Gene;gene=aroE;locus_tag=Dshi_3450
NC_009952.1	RefSeq	CDS	3631945	3632781	.	-	0	ID=cds3441;Name=YP_001534784.1;Parent=gene3490;Note=AroE%3B catalyzes the conversion of shikimate to 3-dehydroshikimate;Dbxref=Genbank:YP_001534784.1,GeneID:5712508;gbkey=CDS;gene=aroE;product=shikimate 5-dehydrogenase;protein_id=YP_001534784.1;transl_table=11
NC_009952.1	RefSeq	gene	3632778	3633374	.	-	.	ID=gene3491;Name=maf;Dbxref=GeneID:5712509;gbkey=Gene;gene=maf;locus_tag=Dshi_3451
NC_009952.1	RefSeq	CDS	3632778	3633374	.	-	0	ID=cds3442;Name=YP_001534785.1;Parent=gene3491;Note=TIGRFAM: maf protein PFAM: Maf family protein KEGG: sil:SPO3892 Maf;Dbxref=Genbank:YP_001534785.1,GeneID:5712509;gbkey=CDS;gene=maf;product=septum formation protein;protein_id=YP_001534785.1;transl_table=11
NC_009952.1	RefSeq	gene	3633757	3634194	.	+	.	ID=gene3492;Name=Dshi_3452;Dbxref=GeneID:5712510;gbkey=Gene;locus_tag=Dshi_3452
NC_009952.1	RefSeq	CDS	3633757	3634194	.	+	0	ID=cds3443;Name=YP_001534786.1;Parent=gene3492;Note=PFAM: Uncharacterized protein family %28UPF0093%29 Swissprot: UPF0093 membrane protein;Dbxref=Genbank:YP_001534786.1,GeneID:5712510;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534786.1;transl_table=11
NC_009952.1	RefSeq	gene	3634311	3635582	.	+	.	ID=gene3493;Name=rho;Dbxref=GeneID:5712511;gbkey=Gene;gene=rho;locus_tag=Dshi_3453
NC_009952.1	RefSeq	CDS	3634311	3635582	.	+	0	ID=cds3444;Name=YP_001534787.1;Parent=gene3493;Note=An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes;Dbxref=Genbank:YP_001534787.1,GeneID:5712511;gbkey=CDS;gene=rho;product=transcription termination factor Rho;protein_id=YP_001534787.1;transl_table=11
NC_009952.1	RefSeq	gene	3635603	3636892	.	+	.	ID=gene3494;Name=trmE;Dbxref=GeneID:5712512;gbkey=Gene;gene=trmE;locus_tag=Dshi_3454
NC_009952.1	RefSeq	CDS	3635603	3636892	.	+	0	ID=cds3445;Name=YP_001534788.1;Parent=gene3494;Note=in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine%2C which is found in the wobble position of some tRNAs and affects ribosomal frameshifting%3B shows potassium-dependent dimerization and GTP hydrolysis%3B also involved in regulation of glutamate-dependent acid resistance and activation of gadE;Dbxref=Genbank:YP_001534788.1,GeneID:5712512;gbkey=CDS;gene=trmE;product=tRNA modification GTPase TrmE;protein_id=YP_001534788.1;transl_table=11
NC_009952.1	RefSeq	gene	3636905	3638764	.	+	.	ID=gene3495;Name=gidA;Dbxref=GeneID:5712513;gbkey=Gene;gene=gidA;locus_tag=Dshi_3455
NC_009952.1	RefSeq	CDS	3636905	3638764	.	+	0	ID=cds3446;Name=YP_001534789.1;Parent=gene3495;Note=GidA%3B glucose-inhibited cell division protein A%3B involved in the 5-carboxymethylaminomethyl modification %28mnm%285%29s%282%29U%29 of the wobble uridine base in some tRNAs;Dbxref=Genbank:YP_001534789.1,GeneID:5712513;gbkey=CDS;gene=gidA;product=tRNA uridine 5-carboxymethylaminomethyl modification protein GidA;protein_id=YP_001534789.1;transl_table=11
NC_009952.1	RefSeq	gene	3638775	3639362	.	+	.	ID=gene3496;Name=gidB;Dbxref=GeneID:5712514;gbkey=Gene;gene=gidB;locus_tag=Dshi_3456
NC_009952.1	RefSeq	CDS	3638775	3639362	.	+	0	ID=cds3447;Name=YP_001534790.1;Parent=gene3496;Note=TIGRFAM: methyltransferase GidB PFAM: glucose inhibited division protein KEGG: acr:Acry_2405 methyltransferase GidB%3B Glucose-inhibited division protein B;Dbxref=Genbank:YP_001534790.1,GeneID:5712514;gbkey=CDS;gene=gidB;product=methyltransferase GidB;protein_id=YP_001534790.1;transl_table=11
NC_009952.1	RefSeq	gene	3639355	3640161	.	+	.	ID=gene3497;Name=parA1;Dbxref=GeneID:5712515;gbkey=Gene;gene=parA1;locus_tag=Dshi_3457
NC_009952.1	RefSeq	CDS	3639355	3640161	.	+	0	ID=cds3448;Name=YP_001534791.1;Parent=gene3497;Note=PFAM: ParA family ATPase;Dbxref=Genbank:YP_001534791.1,GeneID:5712515;gbkey=CDS;gene=parA1;product=chromosome partitioning protein ParA;protein_id=YP_001534791.1;transl_table=11
NC_009952.1	RefSeq	gene	3640179	3641078	.	+	.	ID=gene3498;Name=parB;Dbxref=GeneID:5712516;gbkey=Gene;gene=parB;locus_tag=Dshi_3458
NC_009952.1	RefSeq	CDS	3640179	3641078	.	+	0	ID=cds3449;Name=YP_001534792.1;Parent=gene3498;Note=TIGRFAM: parB-like partition protein PFAM: ParB domain protein nuclease KEGG: rsp:RSP_1225 ParB-like partition protein;Dbxref=Genbank:YP_001534792.1,GeneID:5712516;gbkey=CDS;gene=parB;product=chromosome partitioning protein parB;protein_id=YP_001534792.1;transl_table=11
NC_009952.1	RefSeq	gene	3641075	3641428	.	-	.	ID=gene3499;Name=parB;Dbxref=GeneID:5712517;gbkey=Gene;gene=parB;locus_tag=Dshi_3459
NC_009952.1	RefSeq	CDS	3641075	3641428	.	-	0	ID=cds3450;Name=YP_001534793.1;Parent=gene3499;Note=PFAM: protein of unknown function DUF454 KEGG: rsh:Rsph17029_2886 protein of unknown function DUF454;Dbxref=Genbank:YP_001534793.1,GeneID:5712517;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534793.1;transl_table=11
NC_009952.1	RefSeq	gene	3641425	3642588	.	-	.	ID=gene3500;Name=hemN3;Dbxref=GeneID:5712518;gbkey=Gene;gene=hemN3;locus_tag=Dshi_3460
NC_009952.1	RefSeq	CDS	3641425	3642588	.	-	0	ID=cds3451;Name=YP_001534794.1;Parent=gene3500;Note=catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III;Dbxref=Genbank:YP_001534794.1,GeneID:5712518;gbkey=CDS;gene=hemN3;product=coproporphyrinogen III oxidase;protein_id=YP_001534794.1;transl_table=11
NC_009952.1	RefSeq	gene	3642591	3642968	.	-	.	ID=gene3501;Name=Dshi_3461;Dbxref=GeneID:5712519;gbkey=Gene;locus_tag=Dshi_3461
NC_009952.1	RefSeq	CDS	3642591	3642968	.	-	0	ID=cds3452;Name=YP_001534795.1;Parent=gene3501;Note=PFAM: Endoribonuclease L-PSP KEGG: rsp:RSP_1223 putative translation initiation inhibitor%2C YjgF family %2F putative endoribonuclease L-PSP;Dbxref=Genbank:YP_001534795.1,GeneID:5712519;gbkey=CDS;product=endoribonuclease L-PSP;protein_id=YP_001534795.1;transl_table=11
NC_009952.1	RefSeq	gene	3642968	3643582	.	-	.	ID=gene3502;Name=ham1;Dbxref=GeneID:5712520;gbkey=Gene;gene=ham1;locus_tag=Dshi_3462
NC_009952.1	RefSeq	CDS	3642968	3643582	.	-	0	ID=cds3453;Name=YP_001534796.1;Parent=gene3502;Note=HAM1-like protein%3B Rec-dependent growth%3B RgdB%3B yggV%3B it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine;Dbxref=Genbank:YP_001534796.1,GeneID:5712520;gbkey=CDS;gene=ham1;product=putative deoxyribonucleotide triphosphate pyrophosphatase;protein_id=YP_001534796.1;transl_table=11
NC_009952.1	RefSeq	gene	3643582	3644295	.	-	.	ID=gene3503;Name=rph;Dbxref=GeneID:5712521;gbkey=Gene;gene=rph;locus_tag=Dshi_3463
NC_009952.1	RefSeq	CDS	3643582	3644295	.	-	0	ID=cds3454;Name=YP_001534797.1;Parent=gene3503;Note=RNase PH%3B tRNA nucleotidyltransferase%3B forms hexamers in Bacillus subtilis%3B phosphoroltic 3%27-5%27 exoribonuclease%3B involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs;Dbxref=Genbank:YP_001534797.1,GeneID:5712521;gbkey=CDS;gene=rph;product=ribonuclease PH;protein_id=YP_001534797.1;transl_table=11
NC_009952.1	RefSeq	gene	3644431	3645495	.	+	.	ID=gene3504;Name=hrcA;Dbxref=GeneID:5712522;gbkey=Gene;gene=hrcA;locus_tag=Dshi_3464
NC_009952.1	RefSeq	CDS	3644431	3645495	.	+	0	ID=cds3455;Name=YP_001534798.1;Parent=gene3504;Note=Negative regulator of class I heat shock genes %28grpE-dnaK-dnaJ and groELS operons%29. Prevents heat-shock induction of these operons;Dbxref=Genbank:YP_001534798.1,GeneID:5712522;gbkey=CDS;gene=hrcA;product=heat-inducible transcription repressor;protein_id=YP_001534798.1;transl_table=11
NC_009952.1	RefSeq	gene	3645508	3646101	.	+	.	ID=gene3505;Name=grpE;Dbxref=GeneID:5712523;gbkey=Gene;gene=grpE;locus_tag=Dshi_3465
NC_009952.1	RefSeq	CDS	3645508	3646101	.	+	0	ID=cds3456;Name=YP_001534799.1;Parent=gene3505;Note=PFAM: GrpE protein KEGG: jan:Jann_0208 GrpE protein%3B HSP-70 cofactor;Dbxref=Genbank:YP_001534799.1,GeneID:5712523;gbkey=CDS;gene=grpE;product=protein GrpE;protein_id=YP_001534799.1;transl_table=11
NC_009952.1	RefSeq	gene	3646135	3648768	.	-	.	ID=gene3506;Name=mutS;Dbxref=GeneID:5712524;gbkey=Gene;gene=mutS;locus_tag=Dshi_3466
NC_009952.1	RefSeq	CDS	3646135	3648768	.	-	0	ID=cds3457;Name=YP_001534800.1;Parent=gene3506;Note=This protein performs the mismatch recognition step during the DNA repair process;Dbxref=Genbank:YP_001534800.1,GeneID:5712524;gbkey=CDS;gene=mutS;product=DNA mismatch repair protein MutS;protein_id=YP_001534800.1;transl_table=11
NC_009952.1	RefSeq	gene	3648901	3651159	.	+	.	ID=gene3507;Name=maeB;Dbxref=GeneID:5712525;gbkey=Gene;gene=maeB;locus_tag=Dshi_3467
NC_009952.1	RefSeq	CDS	3648901	3651159	.	+	0	ID=cds3458;Name=YP_001534801.1;Parent=gene3507;Note=NADP-dependent%3B catalyzes the oxidative decarboxylation of malate to form pyruvate%3B decarboxylates oxaloacetate;Dbxref=Genbank:YP_001534801.1,GeneID:5712525;gbkey=CDS;gene=maeB;product=malic enzyme;protein_id=YP_001534801.1;transl_table=11
NC_009952.1	RefSeq	gene	3651291	3651971	.	-	.	ID=gene3508;Name=msrA1;Dbxref=GeneID:5712526;gbkey=Gene;gene=msrA1;locus_tag=Dshi_3468
NC_009952.1	RefSeq	CDS	3651291	3651971	.	-	0	ID=cds3459;Name=YP_001534802.1;Parent=gene3508;Note=TIGRFAM: peptide methionine sulfoxide reductase PFAM: Methionine sulfoxide reductase A KEGG: rde:RD1_0419 methionine-S-sulfoxide reductase%2C putative;Dbxref=Genbank:YP_001534802.1,GeneID:5712526;gbkey=CDS;gene=msrA1;product=peptide methionine sulfoxide reductase;protein_id=YP_001534802.1;transl_table=11
NC_009952.1	RefSeq	gene	3652180	3652893	.	+	.	ID=gene3509;Name=Dshi_3469;Dbxref=GeneID:5712527;gbkey=Gene;locus_tag=Dshi_3469
NC_009952.1	RefSeq	CDS	3652180	3652893	.	+	0	ID=cds3460;Name=YP_001534803.1;Parent=gene3509;Note=REFSEQ: putative branched-chain amino acid aminotransferase;Dbxref=Genbank:YP_001534803.1,GeneID:5712527;gbkey=CDS;product=putative branched-chain amino acid aminotransferase;protein_id=YP_001534803.1;transl_table=11
NC_009952.1	RefSeq	gene	3652890	3653921	.	-	.	ID=gene3510;Name=Dshi_3470;Dbxref=GeneID:5712528;gbkey=Gene;locus_tag=Dshi_3470
NC_009952.1	RefSeq	CDS	3652890	3653921	.	-	0	ID=cds3461;Name=YP_001534804.1;Parent=gene3510;Note=PFAM: peptidase M48 Ste24p;Dbxref=Genbank:YP_001534804.1,GeneID:5712528;gbkey=CDS;product=peptidase M48 Ste24p;protein_id=YP_001534804.1;transl_table=11
NC_009952.1	RefSeq	gene	3653928	3654965	.	-	.	ID=gene3511;Name=Dshi_3471;Dbxref=GeneID:5712529;gbkey=Gene;locus_tag=Dshi_3471
NC_009952.1	RefSeq	CDS	3653928	3654965	.	-	0	ID=cds3462;Name=YP_001534805.1;Parent=gene3511;Note=PFAM: protein of unknown function DUF898 transmembrane KEGG: sme:SMc00782 hypothetical protein;Dbxref=Genbank:YP_001534805.1,GeneID:5712529;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534805.1;transl_table=11
NC_009952.1	RefSeq	gene	3655044	3656264	.	-	.	ID=gene3512;Name=argG;Dbxref=GeneID:5712530;gbkey=Gene;gene=argG;locus_tag=Dshi_3472
NC_009952.1	RefSeq	CDS	3655044	3656264	.	-	0	ID=cds3463;Name=YP_001534806.1;Parent=gene3512;Note=catalyzes the formation of 2-N%28omega%29-%28L-arginino%29succinate from L-citrulline and L-aspartate in arginine biosynthesis%2C AMP-forming;Dbxref=Genbank:YP_001534806.1,GeneID:5712530;gbkey=CDS;gene=argG;product=argininosuccinate synthase;protein_id=YP_001534806.1;transl_table=11
NC_009952.1	RefSeq	gene	3656372	3657613	.	+	.	ID=gene3513;Name=ilvA;Dbxref=GeneID:5712531;gbkey=Gene;gene=ilvA;locus_tag=Dshi_3473
NC_009952.1	RefSeq	CDS	3656372	3657613	.	+	0	ID=cds3464;Name=YP_001534807.1;Parent=gene3513;Note=catalyzes the formation of 2-oxobutanoate from L-threonine%3B biosynthetic;Dbxref=Genbank:YP_001534807.1,GeneID:5712531;gbkey=CDS;gene=ilvA;product=threonine dehydratase;protein_id=YP_001534807.1;transl_table=11
NC_009952.1	RefSeq	gene	3657613	3658659	.	+	.	ID=gene3514;Name=pcaB;Dbxref=GeneID:5712532;gbkey=Gene;gene=pcaB;locus_tag=Dshi_3474
NC_009952.1	RefSeq	CDS	3657613	3658659	.	+	0	ID=cds3465;Name=YP_001534808.1;Parent=gene3514;Note=Catalyzes the cycloisomerization of cis%2Ccis-muconate;Dbxref=Genbank:YP_001534808.1,GeneID:5712532;gbkey=CDS;gene=pcaB;product=3-carboxy-cis%2Ccis-muconate cycloisomerase;protein_id=YP_001534808.1;transl_table=11
NC_009952.1	RefSeq	gene	3658656	3659495	.	-	.	ID=gene3515;Name=pcaB;Dbxref=GeneID:5712533;gbkey=Gene;gene=pcaB;locus_tag=Dshi_3475
NC_009952.1	RefSeq	CDS	3658656	3659495	.	-	0	ID=cds3466;Name=YP_001534809.1;Parent=gene3515;Note=PFAM: protein of unknown function DUF849 KEGG: jan:Jann_4165 protein of unknown function DUF849;Dbxref=Genbank:YP_001534809.1,GeneID:5712533;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534809.1;transl_table=11
NC_009952.1	RefSeq	gene	3659505	3660119	.	-	.	ID=gene3516;Name=pcaG;Dbxref=GeneID:5712534;gbkey=Gene;gene=pcaG;locus_tag=Dshi_3476
NC_009952.1	RefSeq	CDS	3659505	3660119	.	-	0	ID=cds3467;Name=YP_001534810.1;Parent=gene3516;Note=KEGG: bmb:BruAb2_0580 protocatechuate 3%2C4-dioxygenase%2C alpha subunit TIGRFAM: protocatechuate 3%2C4-dioxygenase%2C alpha subunit PFAM: intradiol ring-cleavage dioxygenase%3B %283%2C4-PCD%29;Dbxref=Genbank:YP_001534810.1,GeneID:5712534;gbkey=CDS;gene=pcaG;product=protocatechuate 3%2C4-dioxygenase subunit alpha;protein_id=YP_001534810.1;transl_table=11
NC_009952.1	RefSeq	gene	3660122	3660859	.	-	.	ID=gene3517;Name=pcaH;Dbxref=GeneID:5712535;gbkey=Gene;gene=pcaH;locus_tag=Dshi_3477
NC_009952.1	RefSeq	CDS	3660122	3660859	.	-	0	ID=cds3468;Name=YP_001534811.1;Parent=gene3517;Note=TIGRFAM: protocatechuate 3%2C4-dioxygenase%2C beta subunit PFAM: intradiol ring-cleavage dioxygenase KEGG: sit:TM1040_0558 protocatechuate 3%2C4-dioxygenase%2C beta subunit%3B %283%2C4-PCD%29;Dbxref=Genbank:YP_001534811.1,GeneID:5712535;gbkey=CDS;gene=pcaH;product=protocatechuate 3%2C4-dioxygenase subunit beta;protein_id=YP_001534811.1;transl_table=11
NC_009952.1	RefSeq	gene	3660856	3661242	.	-	.	ID=gene3518;Name=pcaC;Dbxref=GeneID:5713709;gbkey=Gene;gene=pcaC;locus_tag=Dshi_3478
NC_009952.1	RefSeq	CDS	3660856	3661242	.	-	0	ID=cds3469;Name=YP_001534812.1;Parent=gene3518;Note=TIGRFAM: 4-carboxymuconolactone decarboxylase PFAM: Carboxymuconolactone decarboxylase KEGG: sit:TM1040_0559 4-carboxymuconolactone decarboxylase%3B CMD;Dbxref=Genbank:YP_001534812.1,GeneID:5713709;gbkey=CDS;gene=pcaC;product=4-carboxymuconolactone decarboxylase;protein_id=YP_001534812.1;transl_table=11
NC_009952.1	RefSeq	gene	3661252	3662421	.	-	.	ID=gene3519;Name=pobA;Dbxref=GeneID:5713710;gbkey=Gene;gene=pobA;locus_tag=Dshi_3479
NC_009952.1	RefSeq	CDS	3661252	3662421	.	-	0	ID=cds3470;Name=YP_001534813.1;Parent=gene3519;Note=catalyzes the formation of protocatechuate from 4-hydroxybenzoate;Dbxref=Genbank:YP_001534813.1,GeneID:5713710;gbkey=CDS;gene=pobA;product=4-hydroxybenzoate 3-monooxygenase;protein_id=YP_001534813.1;transl_table=11
NC_009952.1	RefSeq	gene	3662578	3662931	.	+	.	ID=gene3520;Name=modE;Dbxref=GeneID:5713711;gbkey=Gene;gene=modE;locus_tag=Dshi_3480
NC_009952.1	RefSeq	CDS	3662578	3662931	.	+	0	ID=cds3471;Name=YP_001534814.1;Parent=gene3520;Note=PFAM: regulatory protein LysR KEGG: pde:Pden_2664 putative transcriptional regulator%2C ModE family PMID 8550508;Dbxref=Genbank:YP_001534814.1,GeneID:5713711;gbkey=CDS;gene=modE;product=transcriptional regulator ModE;protein_id=YP_001534814.1;transl_table=11
NC_009952.1	RefSeq	gene	3662924	3663676	.	+	.	ID=gene3521;Name=modA;Dbxref=GeneID:5713712;gbkey=Gene;gene=modA;locus_tag=Dshi_3481
NC_009952.1	RefSeq	CDS	3662924	3663676	.	+	0	ID=cds3472;Name=YP_001534815.1;Parent=gene3521;Note=TIGRFAM: molybdenum ABC transporter%2C periplasmic molybdate-binding protein PFAM: extracellular solute-binding protein family 1 KEGG: rsp:RSP_3871 ABC molybdate transporter%2C periplasmic binding protein ModA;Dbxref=Genbank:YP_001534815.1,GeneID:5713712;gbkey=CDS;gene=modA;product=molybdate-binding periplasmic protein;protein_id=YP_001534815.1;transl_table=11
NC_009952.1	RefSeq	gene	3663669	3664367	.	+	.	ID=gene3522;Name=modB;Dbxref=GeneID:5713713;gbkey=Gene;gene=modB;locus_tag=Dshi_3482
NC_009952.1	RefSeq	CDS	3663669	3664367	.	+	0	ID=cds3473;Name=YP_001534816.1;Parent=gene3522;Note=part of ModCBA molybdate transporter%3B member of ABC superfamily%3B inner membrane component%3B regulated by repressor protein ModE;Dbxref=Genbank:YP_001534816.1,GeneID:5713713;gbkey=CDS;gene=modB;product=molybdate ABC transporter permease;protein_id=YP_001534816.1;transl_table=11
NC_009952.1	RefSeq	gene	3664364	3665446	.	+	.	ID=gene3523;Name=modC;Dbxref=GeneID:5713714;gbkey=Gene;gene=modC;locus_tag=Dshi_3483
NC_009952.1	RefSeq	CDS	3664364	3665446	.	+	0	ID=cds3474;Name=YP_001534817.1;Parent=gene3523;Note=KEGG: sil:SPO0697 molybdate ABC transporter%2C ATP-binding protein TIGRFAM: molybdate ABC transporter%2C ATPase subunit PFAM: ABC transporter related%3B TOBE domain protein SMART: AAA ATPase;Dbxref=Genbank:YP_001534817.1,GeneID:5713714;gbkey=CDS;gene=modC;product=molybdenum import ATP-binding protein modC;protein_id=YP_001534817.1;transl_table=11
NC_009952.1	RefSeq	gene	3665477	3665809	.	-	.	ID=gene3524;Name=Dshi_3484;Dbxref=GeneID:5713715;gbkey=Gene;locus_tag=Dshi_3484
NC_009952.1	RefSeq	CDS	3665477	3665809	.	-	0	ID=cds3475;Name=YP_001534818.1;Parent=gene3524;Note=PFAM: Hpt domain protein KEGG: sit:TM1040_2886 Hpt protein;Dbxref=Genbank:YP_001534818.1,GeneID:5713715;gbkey=CDS;product=Hpt domain-containing protein;protein_id=YP_001534818.1;transl_table=11
NC_009952.1	RefSeq	gene	3665965	3667233	.	+	.	ID=gene3525;Name=Dshi_3485;Dbxref=GeneID:5713716;gbkey=Gene;locus_tag=Dshi_3485
NC_009952.1	RefSeq	CDS	3665965	3667233	.	+	0	ID=cds3476;Name=YP_001534819.1;Parent=gene3525;Note=PFAM: response regulator receiver%3B Stage II sporulation E family protein SMART: protein phosphatase 2C domain protein KEGG: rde:RD1_0413 response regulator;Dbxref=Genbank:YP_001534819.1,GeneID:5713716;gbkey=CDS;product=response regulator;protein_id=YP_001534819.1;transl_table=11
NC_009952.1	RefSeq	gene	3667262	3667714	.	-	.	ID=gene3526;Name=Dshi_3486;Dbxref=GeneID:5713717;gbkey=Gene;locus_tag=Dshi_3486
NC_009952.1	RefSeq	CDS	3667262	3667714	.	-	0	ID=cds3477;Name=YP_001534820.1;Parent=gene3526;Note=PFAM: NUDIX hydrolase KEGG: rsp:RSP_1208 NUDIX hydrolase;Dbxref=Genbank:YP_001534820.1,GeneID:5713717;gbkey=CDS;product=NUDIX hydrolase;protein_id=YP_001534820.1;transl_table=11
NC_009952.1	RefSeq	gene	3667814	3668812	.	+	.	ID=gene3527;Name=hslO;Dbxref=GeneID:5713718;gbkey=Gene;gene=hslO;locus_tag=Dshi_3487
NC_009952.1	RefSeq	CDS	3667814	3668812	.	+	0	ID=cds3478;Name=YP_001534821.1;Parent=gene3527;Note=PFAM: Hsp33 protein KEGG: jan:Jann_0079 HSP33 protein%3B HSP33;Dbxref=Genbank:YP_001534821.1,GeneID:5713718;gbkey=CDS;gene=hslO;product=33 kDa chaperonin;protein_id=YP_001534821.1;transl_table=11
NC_009952.1	RefSeq	gene	3668799	3669398	.	+	.	ID=gene3528;Name=hslO;Dbxref=GeneID:5713719;gbkey=Gene;gene=hslO;locus_tag=Dshi_3488
NC_009952.1	RefSeq	CDS	3668799	3669398	.	+	0	ID=cds3479;Name=YP_001534822.1;Parent=gene3528;Note=PFAM: NUDIX hydrolase KEGG: sit:TM1040_2890 NUDIX hydrolase;Dbxref=Genbank:YP_001534822.1,GeneID:5713719;gbkey=CDS;product=NUDIX hydrolase;protein_id=YP_001534822.1;transl_table=11
NC_009952.1	RefSeq	gene	3669395	3670543	.	+	.	ID=gene3529;Name=cca;Dbxref=GeneID:5713720;gbkey=Gene;gene=cca;locus_tag=Dshi_3489
NC_009952.1	RefSeq	CDS	3669395	3670543	.	+	0	ID=cds3480;Name=YP_001534823.1;Parent=gene3529;Note=PFAM: Polynucleotide adenylyltransferase region KEGG: sil:SPO0026 polyA polymerase family protein%3B tRNA-NT%3B tRNA CCA-pyrophosphorylase%3B tRNA adenylyl-%2Fcytidylyl-transferase%3B tRNA nucleotidyltransferase;Dbxref=Genbank:YP_001534823.1,GeneID:5713720;gbkey=CDS;gene=cca;product=CCA-adding enzyme;protein_id=YP_001534823.1;transl_table=11
NC_009952.1	RefSeq	gene	3670604	3672448	.	+	.	ID=gene3530;Name=Dshi_3490;Dbxref=GeneID:5713721;gbkey=Gene;locus_tag=Dshi_3490
NC_009952.1	RefSeq	CDS	3670604	3672448	.	+	0	ID=cds3481;Name=YP_001534824.1;Parent=gene3530;Note=PFAM: ABC transporter related SMART: AAA ATPase KEGG: sil:SPO0027 ABC transporter%2C transmembrane ATP-binding protein;Dbxref=Genbank:YP_001534824.1,GeneID:5713721;gbkey=CDS;product=ATPase;protein_id=YP_001534824.1;transl_table=11
NC_009952.1	RefSeq	gene	3672445	3674289	.	+	.	ID=gene3531;Name=Dshi_3491;Dbxref=GeneID:5713722;gbkey=Gene;locus_tag=Dshi_3491
NC_009952.1	RefSeq	CDS	3672445	3674289	.	+	0	ID=cds3482;Name=YP_001534825.1;Parent=gene3531;Note=PFAM: ABC transporter transmembrane region%3B ABC transporter related SMART: AAA ATPase KEGG: rsq:Rsph17025_2641 ABC transporter related;Dbxref=Genbank:YP_001534825.1,GeneID:5713722;gbkey=CDS;product=ATPase;protein_id=YP_001534825.1;transl_table=11
NC_009952.1	RefSeq	gene	3674330	3675574	.	+	.	ID=gene3532;Name=rumA;Dbxref=GeneID:5713723;gbkey=Gene;gene=rumA;locus_tag=Dshi_3492
NC_009952.1	RefSeq	CDS	3674330	3675574	.	+	0	ID=cds3483;Name=YP_001534826.1;Parent=gene3532;Note=PFAM: %28Uracil-5%29-methyltransferase KEGG: sil:SPO0029 23S rRNA %28uracil-5-%29-methyltransferase RumA;Dbxref=Genbank:YP_001534826.1,GeneID:5713723;gbkey=CDS;gene=rumA;product=23S rRNA %28uracil-5-%29-methyltransferase RumA;protein_id=YP_001534826.1;transl_table=11
NC_009952.1	RefSeq	gene	3675591	3676379	.	+	.	ID=gene3533;Name=Dshi_3493;Dbxref=GeneID:5713724;gbkey=Gene;locus_tag=Dshi_3493
NC_009952.1	RefSeq	CDS	3675591	3676379	.	+	0	ID=cds3484;Name=YP_001534827.1;Parent=gene3533;Note=PFAM: Ion transport protein KEGG: rsq:Rsph17025_2848 ion transport protein REFSEQ: ref%7CZP_01055369.1 voltage-gated sodium channel;Dbxref=Genbank:YP_001534827.1,GeneID:5713724;gbkey=CDS;product=voltage-gated sodium channel;protein_id=YP_001534827.1;transl_table=11
NC_009952.1	RefSeq	gene	3676456	3676956	.	+	.	ID=gene3534;Name=Dshi_3494;Dbxref=GeneID:5713725;gbkey=Gene;locus_tag=Dshi_3494
NC_009952.1	RefSeq	CDS	3676456	3676956	.	+	0	ID=cds3485;Name=YP_001534828.1;Parent=gene3534;Note=PFAM: ErfK%2FYbiS%2FYcfS%2FYnhG family protein KEGG: sil:SPO0031 ErfK%2FYbiS%2FYcfS%2FYnhG family protein PMID: 17098896;Dbxref=Genbank:YP_001534828.1,GeneID:5713725;gbkey=CDS;product=ErfK%2FYbiS%2FYcfS%2FYnhG family protein;protein_id=YP_001534828.1;transl_table=11
NC_009952.1	RefSeq	gene	3676961	3677491	.	-	.	ID=gene3535;Name=Dshi_3495;Dbxref=GeneID:5713726;gbkey=Gene;locus_tag=Dshi_3495
NC_009952.1	RefSeq	CDS	3676961	3677491	.	-	0	ID=cds3486;Name=YP_001534829.1;Parent=gene3535;Note=PFAM: SCP-like extracellular KEGG: rsh:Rsph17029_2861 allergen V5%2FTPX-1 family protein;Dbxref=Genbank:YP_001534829.1,GeneID:5713726;gbkey=CDS;product=putative SCP-like extracellular protein;protein_id=YP_001534829.1;transl_table=11
NC_009952.1	RefSeq	gene	3677660	3678262	.	+	.	ID=gene3536;Name=Dshi_3496;Dbxref=GeneID:5713727;gbkey=Gene;locus_tag=Dshi_3496
NC_009952.1	RefSeq	CDS	3677660	3678262	.	+	0	ID=cds3487;Name=YP_001534830.1;Parent=gene3536;Note=PFAM: ErfK%2FYbiS%2FYcfS%2FYnhG family protein KEGG: rde:RD1_0402 ErfK%2FYbiS%2FYcfS%2FYnhG family protein PMID: 17098896;Dbxref=Genbank:YP_001534830.1,GeneID:5713727;gbkey=CDS;product=ErfK%2FYbiS%2FYcfS%2FYnhG family protein;protein_id=YP_001534830.1;transl_table=11
NC_009952.1	RefSeq	gene	3678932	3680020	.	-	.	ID=gene3537;Name=hemH;Dbxref=GeneID:5713729;gbkey=Gene;gene=hemH;locus_tag=Dshi_3498
NC_009952.1	RefSeq	CDS	3678932	3680020	.	-	0	ID=cds3488;Name=YP_001534832.1;Parent=gene3537;Note=protoheme ferro-lyase%3B catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme%3B involved in protoheme biosynthesis%3B in some organisms this protein is membrane-associated while in others it is cytosolic;Dbxref=Genbank:YP_001534832.1,GeneID:5713729;gbkey=CDS;gene=hemH;product=ferrochelatase;protein_id=YP_001534832.1;transl_table=11
NC_009952.1	RefSeq	gene	3680013	3680882	.	-	.	ID=gene3538;Name=hemH;Dbxref=GeneID:5713730;gbkey=Gene;gene=hemH;locus_tag=Dshi_3499
NC_009952.1	RefSeq	CDS	3680013	3680882	.	-	0	ID=cds3489;Name=YP_001534833.1;Parent=gene3538;Note=KEGG: jan:Jann_0294 hypothetical protein PFAM Methyltransferase domain PMID: 17098896;Dbxref=Genbank:YP_001534833.1,GeneID:5713730;gbkey=CDS;product=SAM-dependent methyltransferase;protein_id=YP_001534833.1;transl_table=11
NC_009952.1	RefSeq	gene	3680913	3681689	.	+	.	ID=gene3539;Name=comF;Dbxref=GeneID:5713731;gbkey=Gene;gene=comF;locus_tag=Dshi_3500
NC_009952.1	RefSeq	CDS	3680913	3681689	.	+	0	ID=cds3490;Name=YP_001534834.1;Parent=gene3539;Note=KEGG: sil:SPO0071 competence protein F%2C putative TIGR00201 comF family protein PMID 17098896;Dbxref=Genbank:YP_001534834.1,GeneID:5713731;gbkey=CDS;gene=comF;product=competence protein F;protein_id=YP_001534834.1;transl_table=11
NC_009952.1	RefSeq	gene	3681743	3682489	.	+	.	ID=gene3540;Name=crtA;Dbxref=GeneID:5713732;gbkey=Gene;gene=crtA;locus_tag=Dshi_3501
NC_009952.1	RefSeq	CDS	3681743	3682489	.	+	0	ID=cds3491;Name=YP_001534835.1;Parent=gene3540;Note=KEGG: rde:RD1_0121 spheroidene monooxygenase PMID: 17098896;Dbxref=Genbank:YP_001534835.1,GeneID:5713732;gbkey=CDS;gene=crtA;product=spheroidene monooxygenase;protein_id=YP_001534835.1;transl_table=11
NC_009952.1	RefSeq	gene	3682486	3683490	.	+	.	ID=gene3541;Name=bchI;Dbxref=GeneID:5713733;gbkey=Gene;gene=bchI;locus_tag=Dshi_3502
NC_009952.1	RefSeq	CDS	3682486	3683490	.	+	0	ID=cds3492;Name=YP_001534836.1;Parent=gene3541;Note=involved in chelation of magnesium into protoporphyrin IX%3B involved in bacteriochlorophyll biosynthesis%3B part of a complex with BchI%2C BchD%2C and BchH;Dbxref=Genbank:YP_001534836.1,GeneID:5713733;gbkey=CDS;gene=bchI;product=magnesium chelatase subunit I;protein_id=YP_001534836.1;transl_table=11
NC_009952.1	RefSeq	gene	3683499	3685220	.	+	.	ID=gene3542;Name=bchD;Dbxref=GeneID:5713734;gbkey=Gene;gene=bchD;locus_tag=Dshi_3503
NC_009952.1	RefSeq	CDS	3683499	3685220	.	+	0	ID=cds3493;Name=YP_001534837.1;Parent=gene3542;Note=involved in chelation of magnesium into protoporphyrin IX%3B involved in bacteriochlorophyll biosynthesis%3B part of a complex with BchI%2C BchD%2C and BchH;Dbxref=Genbank:YP_001534837.1,GeneID:5713734;gbkey=CDS;gene=bchD;product=magnesium chelatase subunit D;protein_id=YP_001534837.1;transl_table=11
NC_009952.1	RefSeq	gene	3685217	3686125	.	+	.	ID=gene3543;Name=bchO;Dbxref=GeneID:5713735;gbkey=Gene;gene=bchO;locus_tag=Dshi_3504
NC_009952.1	RefSeq	CDS	3685217	3686125	.	+	0	ID=cds3494;Name=YP_001534838.1;Parent=gene3543;Note=PFAM: alpha%2Fbeta hydrolase fold%3B Thioesterase%3B phospholipase%2FCarboxylesterase KEGG: rsh:Rsph17029_1918 alpha%2Fbeta hydrolase fold Swissprot: P26174 Magnesium-chelatase 30 kDa subunit PMID: 17098896%3B Mg-protoporphyrin IX chelatase;Dbxref=Genbank:YP_001534838.1,GeneID:5713735;gbkey=CDS;gene=bchO;product=magnesium-chelatase 30 kDa subunit;protein_id=YP_001534838.1;transl_table=11
NC_009952.1	RefSeq	gene	3686122	3686574	.	-	.	ID=gene3544;Name=bchO;Dbxref=GeneID:5713736;gbkey=Gene;gene=bchO;locus_tag=Dshi_3505
NC_009952.1	RefSeq	CDS	3686122	3686574	.	-	0	ID=cds3495;Name=YP_001534839.1;Parent=gene3544;Note=PFAM: regulatory protein MarR KEGG: rsh:Rsph17029_2853 transcriptional regulator%2C MarR family%3B MarR family;Dbxref=Genbank:YP_001534839.1,GeneID:5713736;gbkey=CDS;product=transcriptional regulator;protein_id=YP_001534839.1;transl_table=11
NC_009952.1	RefSeq	gene	3686571	3687404	.	-	.	ID=gene3545;Name=Dshi_3506;Dbxref=GeneID:5713737;gbkey=Gene;locus_tag=Dshi_3506
NC_009952.1	RefSeq	CDS	3686571	3687404	.	-	0	ID=cds3496;Name=YP_001534840.1;Parent=gene3545;Note=PFAM: Nitrilase%2Fcyanide hydratase and apolipoprotein N-acyltransferase KEGG: sil:SPO0069 hydrolase%2C carbon-nitrogen family;Dbxref=Genbank:YP_001534840.1,GeneID:5713737;gbkey=CDS;product=nitrilase%2Fcyanide hydratase and apolipoprotein N-acyltransferase;protein_id=YP_001534840.1;transl_table=11
NC_009952.1	RefSeq	gene	3687404	3687661	.	-	.	ID=gene3546;Name=grxC;Dbxref=GeneID:5713738;gbkey=Gene;gene=grxC;locus_tag=Dshi_3507
NC_009952.1	RefSeq	CDS	3687404	3687661	.	-	0	ID=cds3497;Name=YP_001534841.1;Parent=gene3546;Note=TIGRFAM: glutaredoxin 3 PFAM: glutaredoxin KEGG: sil:SPO0070 glutaredoxin%3B Grx3;Dbxref=Genbank:YP_001534841.1,GeneID:5713738;gbkey=CDS;gene=grxC;product=glutaredoxin-3;protein_id=YP_001534841.1;transl_table=11
NC_009952.1	RefSeq	gene	3687777	3689351	.	+	.	ID=gene3547;Name=crtI;Dbxref=GeneID:5713739;gbkey=Gene;gene=crtI;locus_tag=Dshi_3508
NC_009952.1	RefSeq	CDS	3687777	3689351	.	+	0	ID=cds3498;Name=YP_001534842.1;Parent=gene3547;Note=TIGRFAM: Zeta-phytoene desaturase PFAM: amine oxidase%3B FAD dependent oxidoreductase KEGG: rde:RD1_0120 phytoene dehydrogenase PMID: 17098896%3B Phytoene desaturase;Dbxref=Genbank:YP_001534842.1,GeneID:5713739;gbkey=CDS;gene=crtI;product=phytoene dehydrogenase;protein_id=YP_001534842.1;transl_table=11
NC_009952.1	RefSeq	gene	3689348	3690433	.	+	.	ID=gene3548;Name=crtB;Dbxref=GeneID:5713740;gbkey=Gene;gene=crtB;locus_tag=Dshi_3509
NC_009952.1	RefSeq	CDS	3689348	3690433	.	+	0	ID=cds3499;Name=YP_001534843.1;Parent=gene3548;Note=PFAM: Squalene%2Fphytoene synthase KEGG: rde:RD1_0119 phytoene synthase PMID: 17098896;Dbxref=Genbank:YP_001534843.1,GeneID:5713740;gbkey=CDS;gene=crtB;product=phytoene synthase;protein_id=YP_001534843.1;transl_table=11
NC_009952.1	RefSeq	gene	3690440	3690922	.	+	.	ID=gene3549;Name=tspO;Dbxref=GeneID:5713741;gbkey=Gene;gene=tspO;locus_tag=Dshi_3510
NC_009952.1	RefSeq	CDS	3690440	3690922	.	+	0	ID=cds3500;Name=YP_001534844.1;Parent=gene3549;Note=PFAM: TspO%2FMBR family protein KEGG: jan:Jann_0035 TspO and MBR like proteins PMID: 17098896%3B 10648776;Dbxref=Genbank:YP_001534844.1,GeneID:5713741;gbkey=CDS;gene=tspO;product=tryptophan rich sensory protein;protein_id=YP_001534844.1;transl_table=11
NC_009952.1	RefSeq	gene	3690919	3691104	.	-	.	ID=gene3550;Name=tspO;Dbxref=GeneID:5713742;gbkey=Gene;gene=tspO;locus_tag=Dshi_3511
NC_009952.1	RefSeq	CDS	3690919	3691104	.	-	0	ID=cds3501;Name=YP_001534845.1;Parent=gene3550;Note=KEGG: rsh:Rsph17029_2919 hypothetical protein;Dbxref=Genbank:YP_001534845.1,GeneID:5713742;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534845.1;transl_table=11
NC_009952.1	RefSeq	gene	3691117	3691875	.	-	.	ID=gene3551;Name=crtC;Dbxref=GeneID:5713743;gbkey=Gene;gene=crtC;locus_tag=Dshi_3512
NC_009952.1	RefSeq	CDS	3691117	3691875	.	-	0	ID=cds3502;Name=YP_001534846.1;Parent=gene3551;Note=PFAM: hydroxyneurosporene synthase KEGG: rde:RD1_0116 hydroxyneurosporene dehydrogenase PMID: 17098896;Dbxref=Genbank:YP_001534846.1,GeneID:5713743;gbkey=CDS;gene=crtC;product=hydroxyneurosporene dehydrogenase;protein_id=YP_001534846.1;transl_table=11
NC_009952.1	RefSeq	gene	3691944	3693542	.	-	.	ID=gene3552;Name=crtD;Dbxref=GeneID:5713744;gbkey=Gene;gene=crtD;locus_tag=Dshi_3513
NC_009952.1	RefSeq	CDS	3691944	3693542	.	-	0	ID=cds3503;Name=YP_001534847.1;Parent=gene3552;Note=TIGRFAM: Zeta-phytoene desaturase PFAM: amine oxidase%3B FAD dependent oxidoreductase KEGG: jan:Jann_0183 amine oxidase Swissprot: P17059 PMID: 17098896;Dbxref=Genbank:YP_001534847.1,GeneID:5713744;gbkey=CDS;gene=crtD;product=methoxyneurosporene dehydrogenase;protein_id=YP_001534847.1;transl_table=11
NC_009952.1	RefSeq	gene	3693641	3694519	.	+	.	ID=gene3553;Name=crtE;Dbxref=GeneID:5713745;gbkey=Gene;gene=crtE;locus_tag=Dshi_3514
NC_009952.1	RefSeq	CDS	3693641	3694519	.	+	0	ID=cds3504;Name=YP_001534848.1;Parent=gene3553;Note=PFAM: Polyprenyl synthetase KEGG: jan:Jann_0182 polyprenyl synthetase COG0142 PMID: 17098896%3B Farnesyltranstransferase%3B GGPP synthetase;Dbxref=Genbank:YP_001534848.1,GeneID:5713745;gbkey=CDS;gene=crtE;product=geranylgeranyl pyrophosphate synthetase;protein_id=YP_001534848.1;transl_table=11
NC_009952.1	RefSeq	gene	3694523	3695653	.	+	.	ID=gene3554;Name=crtF;Dbxref=GeneID:5713746;gbkey=Gene;gene=crtF;locus_tag=Dshi_3515
NC_009952.1	RefSeq	CDS	3694523	3695653	.	+	0	ID=cds3505;Name=YP_001534849.1;Parent=gene3554;Note=PFAM: O-methyltransferase family 2%3B Methyltransferase type 12 KEGG: jan:Jann_0181 O-methyltransferase%2C family 2 PMID: 17098896%3B O-methylase;Dbxref=Genbank:YP_001534849.1,GeneID:5713746;gbkey=CDS;gene=crtF;product=hydroxyneurosporene methyltransferase;protein_id=YP_001534849.1;transl_table=11
NC_009952.1	RefSeq	gene	3695777	3696715	.	+	.	ID=gene3555;Name=bchC;Dbxref=GeneID:5713747;gbkey=Gene;gene=bchC;locus_tag=Dshi_3516
NC_009952.1	RefSeq	CDS	3695777	3696715	.	+	0	ID=cds3506;Name=YP_001534850.1;Parent=gene3555;Note=TIGRFAM: chlorophyll synthesis pathway%2C BchC PFAM: Alcohol dehydrogenase GroES domain protein KEGG: jan:Jann_0180 chlorophyll synthesis pathway%2C BchC PMID: 17098896;Dbxref=Genbank:YP_001534850.1,GeneID:5713747;gbkey=CDS;gene=bchC;product=2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase;protein_id=YP_001534850.1;transl_table=11
NC_009952.1	RefSeq	gene	3696712	3697719	.	+	.	ID=gene3556;Name=bchX;Dbxref=GeneID:5713748;gbkey=Gene;gene=bchX;locus_tag=Dshi_3517
NC_009952.1	RefSeq	CDS	3696712	3697719	.	+	0	ID=cds3507;Name=YP_001534851.1;Parent=gene3556;Note=KEGG: jan:Jann_0179 chlorophyllide reductase iron protein subunit X TIGRFAM: chlorophyllide reductase iron protein subunit X PFAM: NifH%2FfrxC-family protein PMID: 17098896%3B 10648776%3B 8468299;Dbxref=Genbank:YP_001534851.1,GeneID:5713748;gbkey=CDS;gene=bchX;product=bacteriachlorophyllide reductase iron protein subunit X;protein_id=YP_001534851.1;transl_table=11
NC_009952.1	RefSeq	gene	3697755	3699359	.	+	.	ID=gene3557;Name=bchY;Dbxref=GeneID:5713749;gbkey=Gene;gene=bchY;locus_tag=Dshi_3518
NC_009952.1	RefSeq	CDS	3697755	3699359	.	+	0	ID=cds3508;Name=YP_001534852.1;Parent=gene3557;Note=TIGRFAM: chlorophyllide reductase subunit Y KEGG: jan:Jann_0178 chlorophyllide reductase subunit Y PMID: 17098896%3B 10648776%3B 8468299;Dbxref=Genbank:YP_001534852.1,GeneID:5713749;gbkey=CDS;gene=bchY;product=bacteriachlorophyllide reductase iron protein subunit Y;protein_id=YP_001534852.1;transl_table=11
NC_009952.1	RefSeq	gene	3699577	3701043	.	+	.	ID=gene3558;Name=bchZ;Dbxref=GeneID:5713750;gbkey=Gene;gene=bchZ;locus_tag=Dshi_3519
NC_009952.1	RefSeq	CDS	3699577	3701043	.	+	0	ID=cds3509;Name=YP_001534853.1;Parent=gene3558;Note=TIGRFAM: chlorophyllide reductase subunit Z PFAM: oxidoreductase%2Fnitrogenase component 1%3B protein of unknown function DUF1197 KEGG: jan:Jann_0177 chlorophyllide reductase subunit Z PMID: 17098896%3B 10648776%3B 8468299;Dbxref=Genbank:YP_001534853.1,GeneID:5713750;gbkey=CDS;gene=bchZ;product=bacteriachlorophyllide reductase iron protein subunit Z;protein_id=YP_001534853.1;transl_table=11
NC_009952.1	RefSeq	gene	3701062	3701286	.	+	.	ID=gene3559;Name=pufQ;Dbxref=GeneID:5713751;gbkey=Gene;gene=pufQ;locus_tag=Dshi_3520
NC_009952.1	RefSeq	CDS	3701062	3701286	.	+	0	ID=cds3510;Name=YP_001534854.1;Parent=gene3559;Note=PFAM: PufQ cytochrome subunit KEGG: rde:RD1_0108 protein PufQ PMID: 17098896;Dbxref=Genbank:YP_001534854.1,GeneID:5713751;gbkey=CDS;gene=pufQ;product=protein pufQ;protein_id=YP_001534854.1;transl_table=11
NC_009952.1	RefSeq	gene	3701410	3701559	.	+	.	ID=gene3560;Name=pufB;Dbxref=GeneID:5713752;gbkey=Gene;gene=pufB;locus_tag=Dshi_3521
NC_009952.1	RefSeq	CDS	3701410	3701559	.	+	0	ID=cds3511;Name=YP_001534855.1;Parent=gene3560;Note=PFAM: antenna complex alpha%2Fbeta subunit KEGG: rsq:Rsph17025_2032 antenna complex%2C alpha%2Fbeta subunit PMID: 17098896%3B 15879238%3B Antenna pigment protein beta chain%3B LH-1;Dbxref=Genbank:YP_001534855.1,GeneID:5713752;gbkey=CDS;gene=pufB;product=light-harvesting protein B-870 subunit beta;protein_id=YP_001534855.1;transl_table=11
NC_009952.1	RefSeq	gene	3701573	3701734	.	+	.	ID=gene3561;Name=pufA;Dbxref=GeneID:5713753;gbkey=Gene;gene=pufA;locus_tag=Dshi_3522
NC_009952.1	RefSeq	CDS	3701573	3701734	.	+	0	ID=cds3512;Name=YP_001534856.1;Parent=gene3561;Note=PFAM: antenna complex alpha%2Fbeta subunit KEGG: rsh:Rsph17029_1901 antenna complex%2C alpha%2Fbeta subunit PMID: 17098896%3B 15879238%3B Antenna pigment protein alpha chain%3B LH-1;Dbxref=Genbank:YP_001534856.1,GeneID:5713753;gbkey=CDS;gene=pufA;product=light-harvesting protein B-870 subunit alpha;protein_id=YP_001534856.1;transl_table=11
NC_009952.1	RefSeq	gene	3701883	3702722	.	+	.	ID=gene3562;Name=pufL;Dbxref=GeneID:5713754;gbkey=Gene;gene=pufL;locus_tag=Dshi_3523
NC_009952.1	RefSeq	CDS	3701883	3702722	.	+	0	ID=cds3513;Name=YP_001534857.1;Parent=gene3562;Note=TIGRFAM: photosynthetic reaction center L subunit PFAM: photosynthetic reaction centre protein KEGG: rde:RD1_0104 photosynthetic reaction center L subunit PMID: 17098896%3B Photosynthetic reaction center L subunit;Dbxref=Genbank:YP_001534857.1,GeneID:5713754;gbkey=CDS;gene=pufL;product=photosynthetic reaction center subunit L;protein_id=YP_001534857.1;transl_table=11
NC_009952.1	RefSeq	gene	3702726	3703718	.	+	.	ID=gene3563;Name=pufM;Dbxref=GeneID:5713755;gbkey=Gene;gene=pufM;locus_tag=Dshi_3524
NC_009952.1	RefSeq	CDS	3702726	3703718	.	+	0	ID=cds3514;Name=YP_001534858.1;Parent=gene3563;Note=TIGRFAM: photosynthetic reaction center%2C M subunit PFAM: photosynthetic reaction centre protein KEGG: jan:Jann_0172 photosynthetic reaction center M subunit PMID: 17098896%3B Photosynthetic reaction center M subunit;Dbxref=Genbank:YP_001534858.1,GeneID:5713755;gbkey=CDS;gene=pufM;product=photosynthetic reaction center subunit M;protein_id=YP_001534858.1;transl_table=11
NC_009952.1	RefSeq	gene	3703718	3704800	.	+	.	ID=gene3564;Name=pufC;Dbxref=GeneID:5713756;gbkey=Gene;gene=pufC;locus_tag=Dshi_3525
NC_009952.1	RefSeq	CDS	3703718	3704800	.	+	0	ID=cds3515;Name=YP_001534859.1;Parent=gene3564;Note=PFAM: photosynthetic reaction centre cytochrome c subunit KEGG: rde:RD1_0102 photosynthetic reaction center cytochrome c subunit PMID: 17098896;Dbxref=Genbank:YP_001534859.1,GeneID:5713756;gbkey=CDS;gene=pufC;product=photosynthetic reaction center cytochrome subunit C;protein_id=YP_001534859.1;transl_table=11
NC_009952.1	RefSeq	gene	3704933	3706909	.	+	.	ID=gene3565;Name=dxs2;Dbxref=GeneID:5713757;gbkey=Gene;gene=dxs2;locus_tag=Dshi_3526
NC_009952.1	RefSeq	CDS	3704933	3706909	.	+	0	ID=cds3516;Name=YP_001534860.1;Parent=gene3565;Note=catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate;Dbxref=Genbank:YP_001534860.1,GeneID:5713757;gbkey=CDS;gene=dxs2;product=1-deoxy-D-xylulose-5-phosphate synthase;protein_id=YP_001534860.1;transl_table=11
NC_009952.1	RefSeq	gene	3707023	3707553	.	-	.	ID=gene3566;Name=idi;Dbxref=GeneID:5713758;gbkey=Gene;gene=idi;locus_tag=Dshi_3527
NC_009952.1	RefSeq	CDS	3707023	3707553	.	-	0	ID=cds3517;Name=YP_001534861.1;Parent=gene3566;Note=KEGG: rsq:Rsph17025_1019 isopentenyl-diphosphate delta-isomerase%2C type 1 TIGRFAM: isopentenyl-diphosphate delta-isomerase%2C type 1 PFAM: NUDIX hydrolase PMID: 17098896%3B IPP:DMAPP isomerase%3B Isopentenyl pyrophosphate isomerase%3B IPP isomerase;Dbxref=Genbank:YP_001534861.1,GeneID:5713758;gbkey=CDS;gene=idi;product=isopentenyl-diphosphate Delta-isomerase;protein_id=YP_001534861.1;transl_table=11
NC_009952.1	RefSeq	gene	3707550	3708734	.	-	.	ID=gene3567;Name=bchP;Dbxref=GeneID:5713759;gbkey=Gene;gene=bchP;locus_tag=Dshi_3528
NC_009952.1	RefSeq	CDS	3707550	3708734	.	-	0	ID=cds3518;Name=YP_001534862.1;Parent=gene3567;Note=TIGRFAM: geranylgeranyl reductase PFAM: monooxygenase FAD-binding%3B FAD dependent oxidoreductase%3B Lycopene beta and epsilon cyclase KEGG: jan:Jann_0167 geranylgeranyl reductase PMID: 10572128%3B 17098896;Dbxref=Genbank:YP_001534862.1,GeneID:5713759;gbkey=CDS;gene=bchP;product=geranylgeranyl reductase;protein_id=YP_001534862.1;transl_table=11
NC_009952.1	RefSeq	gene	3708748	3710049	.	-	.	ID=gene3568;Name=pucC2;Dbxref=GeneID:5713760;gbkey=Gene;gene=pucC2;locus_tag=Dshi_3529
NC_009952.1	RefSeq	CDS	3708748	3710049	.	-	0	ID=cds3519;Name=YP_001534863.1;Parent=gene3568;Note=PFAM: PUCC protein%3B major facilitator superfamily MFS_1 KEGG: rsp:RSP_0278 putative light-harvesting 1 %28B870%29 complex assembly protein PucC PMID: 17098896;Dbxref=Genbank:YP_001534863.1,GeneID:5713760;gbkey=CDS;gene=pucC2;product=PucC protein;protein_id=YP_001534863.1;transl_table=11
NC_009952.1	RefSeq	gene	3710051	3710956	.	-	.	ID=gene3569;Name=bchG;Dbxref=GeneID:5713761;gbkey=Gene;gene=bchG;locus_tag=Dshi_3530
NC_009952.1	RefSeq	CDS	3710051	3710956	.	-	0	ID=cds3520;Name=YP_001534864.1;Parent=gene3569;Note=TIGRFAM: bacteriochlorophyll%2Fchlorophyll synthetase PFAM: UbiA prenyltransferase KEGG: jan:Jann_0165 bacteriochlorophyll%2Fchlorophyll synthetase PMID: 17098896;Dbxref=Genbank:YP_001534864.1,GeneID:5713761;gbkey=CDS;gene=bchG;product=bacteriochlorophyll%2Fchlorophyll a synthase;protein_id=YP_001534864.1;transl_table=11
NC_009952.1	RefSeq	gene	3711054	3712484	.	-	.	ID=gene3570;Name=ppsR;Dbxref=GeneID:5713762;gbkey=Gene;gene=ppsR;locus_tag=Dshi_3531
NC_009952.1	RefSeq	CDS	3711054	3712484	.	-	0	ID=cds3521;Name=YP_001534865.1;Parent=gene3570;Note=TIGRFAM: PAS sensor protein%3B transcriptional regulator PpsR PMID: 10735869%3B 17098896;Dbxref=Genbank:YP_001534865.1,GeneID:5713762;gbkey=CDS;gene=ppsR;product=transcriptional regulator PpsR;protein_id=YP_001534865.1;transl_table=11
NC_009952.1	RefSeq	gene	3712527	3713387	.	-	.	ID=gene3571;Name=ppaA;Dbxref=GeneID:5713763;gbkey=Gene;gene=ppaA;locus_tag=Dshi_3532
NC_009952.1	RefSeq	CDS	3712527	3713387	.	-	0	ID=cds3522;Name=YP_001534866.1;Parent=gene3571;Note=REFSEQ: ref%7CZP_01034604.1 regulatory protein PpaA PMID: 17098896;Dbxref=Genbank:YP_001534866.1,GeneID:5713763;gbkey=CDS;gene=ppaA;product=regulatory protein PpaA;protein_id=YP_001534866.1;transl_table=11
NC_009952.1	RefSeq	gene	3713645	3714133	.	+	.	ID=gene3572;Name=bchF;Dbxref=GeneID:5713764;gbkey=Gene;gene=bchF;locus_tag=Dshi_3533
NC_009952.1	RefSeq	CDS	3713645	3714133	.	+	0	ID=cds3523;Name=YP_001534867.1;Parent=gene3572;Note=PFAM: 2-vinyl bacteriochlorophyllide hydratase KEGG: rsh:Rsph17029_1927 2-vinyl bacteriochlorophyllide hydratase PMID: 17098896;Dbxref=Genbank:YP_001534867.1,GeneID:5713764;gbkey=CDS;gene=bchF;product=2-oxoglutarate synthase subunit%2C 2-oxoacid-ferredoxin oxidoreductase subunit CD;protein_id=YP_001534867.1;transl_table=11
NC_009952.1	RefSeq	gene	3714130	3715413	.	+	.	ID=gene3573;Name=bchN;Dbxref=GeneID:5713765;gbkey=Gene;gene=bchN;locus_tag=Dshi_3534
NC_009952.1	RefSeq	CDS	3714130	3715413	.	+	0	ID=cds3524;Name=YP_001534868.1;Parent=gene3573;Note=light-independent reduction of protochlorophyllide to form chlorophyllide a;Dbxref=Genbank:YP_001534868.1,GeneID:5713765;gbkey=CDS;gene=bchN;product=light-independent protochlorophyllide reductase subunit N;protein_id=YP_001534868.1;transl_table=11
NC_009952.1	RefSeq	gene	3715410	3716996	.	+	.	ID=gene3574;Name=bchB;Dbxref=GeneID:5713766;gbkey=Gene;gene=bchB;locus_tag=Dshi_3535
NC_009952.1	RefSeq	CDS	3715410	3716996	.	+	0	ID=cds3525;Name=YP_001534869.1;Parent=gene3574;Note=light-independent reduction of protochlorophyllide to form chlorophyllide a;Dbxref=Genbank:YP_001534869.1,GeneID:5713766;gbkey=CDS;gene=bchB;product=light-independent protochlorophyllide reductase subunit B;protein_id=YP_001534869.1;transl_table=11
NC_009952.1	RefSeq	gene	3716986	3720570	.	+	.	ID=gene3575;Name=bchH;Dbxref=GeneID:5713767;gbkey=Gene;gene=bchH;locus_tag=Dshi_3536
NC_009952.1	RefSeq	CDS	3716986	3720570	.	+	0	ID=cds3526;Name=YP_001534870.1;Parent=gene3575;Note=involved in chelation of magnesium into protoporphyrin IX%3B involved in bacteriochlorophyll biosynthesis%3B the enzyme from Rhodobacter capsulatus contains an Fe-S cluster%3B part of a complex with BchI%2C BchD%2C and BchH;Dbxref=Genbank:YP_001534870.1,GeneID:5713767;gbkey=CDS;gene=bchH;product=magnesium chelatase subunit H;protein_id=YP_001534870.1;transl_table=11
NC_009952.1	RefSeq	gene	3720602	3721501	.	+	.	ID=gene3576;Name=chlL;Dbxref=GeneID:5713768;gbkey=Gene;gene=chlL;locus_tag=Dshi_3537
NC_009952.1	RefSeq	CDS	3720602	3721501	.	+	0	ID=cds3527;Name=YP_001534871.1;Parent=gene3576;Note=light-independent%3B with chlN%28bchN%29 and chlB%28bchB%29 reduces ring D of protochlorophyllide to form chlorophyllide a in chlorophyll%2Fbacteriochlorophyll production;Dbxref=Genbank:YP_001534871.1,GeneID:5713768;gbkey=CDS;gene=chlL;product=protochlorophyllide reductase iron-sulfur ATP-binding protein;protein_id=YP_001534871.1;transl_table=11
NC_009952.1	RefSeq	gene	3721548	3722231	.	+	.	ID=gene3577;Name=bchM;Dbxref=GeneID:5713769;gbkey=Gene;gene=bchM;locus_tag=Dshi_3538
NC_009952.1	RefSeq	CDS	3721548	3722231	.	+	0	ID=cds3528;Name=YP_001534872.1;Parent=gene3577;Note=catalyzes the formation of Mg-protoporphyrin IX methyl ester and S-adenosyl-L-homocysteine from Mg-protoporphyrin IX and S-adenosyl-L-methionine;Dbxref=Genbank:YP_001534872.1,GeneID:5713769;gbkey=CDS;gene=bchM;product=Mg-protoporphyrin IX methyl transferase;protein_id=YP_001534872.1;transl_table=11
NC_009952.1	RefSeq	gene	3722228	3723673	.	+	.	ID=gene3578;Name=lhaA;Dbxref=GeneID:5713770;gbkey=Gene;gene=lhaA;locus_tag=Dshi_3539
NC_009952.1	RefSeq	CDS	3722228	3723673	.	+	0	ID=cds3529;Name=YP_001534873.1;Parent=gene3578;Note=PFAM: PUCC protein%3B major facilitator superfamily MFS_1 KEGG: rde:RD1_0134 LhaA protein PMID: 17098896;Dbxref=Genbank:YP_001534873.1,GeneID:5713770;gbkey=CDS;gene=lhaA;product=PucC protein;protein_id=YP_001534873.1;transl_table=11
NC_009952.1	RefSeq	gene	3723698	3724468	.	+	.	ID=gene3579;Name=puhA;Dbxref=GeneID:5713771;gbkey=Gene;gene=puhA;locus_tag=Dshi_3540
NC_009952.1	RefSeq	CDS	3723698	3724468	.	+	0	ID=cds3530;Name=YP_001534874.1;Parent=gene3579;Note=TIGRFAM: photosynthetic reaction center H subunit PFAM: PRC-barrel domain protein%3B Photosynthetic reaction centre H subunit KEGG: rde:RD1_0133 photosynthetic reaction center H subunit PMID: 17098896;Dbxref=Genbank:YP_001534874.1,GeneID:5713771;gbkey=CDS;gene=puhA;product=reaction center protein H chain;protein_id=YP_001534874.1;transl_table=11
NC_009952.1	RefSeq	gene	3724493	3725170	.	+	.	ID=gene3580;Name=puhB;Dbxref=GeneID:5713772;gbkey=Gene;gene=puhB;locus_tag=Dshi_3541
NC_009952.1	RefSeq	CDS	3724493	3725170	.	+	0	ID=cds3531;Name=YP_001534875.1;Parent=gene3580;Note=KEGG: rde:RD1_0132 possible photosynthetic co REFSEQ: ref%7CZP_01879036.1 putative photosynthetic complex assembly protein PMID: 17098896;Dbxref=Genbank:YP_001534875.1,GeneID:5713772;gbkey=CDS;gene=puhB;product=putative photosynthetic complex assembly protein;protein_id=YP_001534875.1;transl_table=11
NC_009952.1	RefSeq	gene	3725184	3725663	.	+	.	ID=gene3581;Name=puhC;Dbxref=GeneID:5713773;gbkey=Gene;gene=puhC;locus_tag=Dshi_3542
NC_009952.1	RefSeq	CDS	3725184	3725663	.	+	0	ID=cds3532;Name=YP_001534876.1;Parent=gene3581;Note=KEGG: rde:RD1_0131 REFSEQ: ref%7CYP_680552.1 PuhC Protein PMID: 17098896%3B 17098896;Dbxref=Genbank:YP_001534876.1,GeneID:5713773;gbkey=CDS;gene=puhC;product=PuhC protein;protein_id=YP_001534876.1;transl_table=11
NC_009952.1	RefSeq	gene	3725667	3725963	.	+	.	ID=gene3582;Name=Dshi_3543;Dbxref=GeneID:5713774;gbkey=Gene;locus_tag=Dshi_3543
NC_009952.1	RefSeq	CDS	3725667	3725963	.	+	0	ID=cds3533;Name=YP_001534877.1;Parent=gene3582;Note=KEGG: rde:RD1_0130 hypothetical protein;Dbxref=Genbank:YP_001534877.1,GeneID:5713774;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534877.1;transl_table=11
NC_009952.1	RefSeq	gene	3725960	3727081	.	+	.	ID=gene3583;Name=acsF;Dbxref=GeneID:5713775;gbkey=Gene;gene=acsF;locus_tag=Dshi_3544
NC_009952.1	RefSeq	CDS	3725960	3727081	.	+	0	ID=cds3534;Name=YP_001534878.1;Parent=gene3583;Note=oxidative%3B catalyzes the formation of divinylprotochlorophyllide from magnesium-protoporphyrin IX 13-monomethyl ester in isocyclic ring formation in chlorophyll biosynthesis;Dbxref=Genbank:YP_001534878.1,GeneID:5713775;gbkey=CDS;gene=acsF;product=magnesium-protoporphyrin IX monomethyl ester cyclase;protein_id=YP_001534878.1;transl_table=11
NC_009952.1	RefSeq	gene	3727081	3727878	.	+	.	ID=gene3584;Name=puhE;Dbxref=GeneID:5713776;gbkey=Gene;gene=puhE;locus_tag=Dshi_3545
NC_009952.1	RefSeq	CDS	3727081	3727878	.	+	0	ID=cds3535;Name=YP_001534879.1;Parent=gene3584;Note=KEGG: rde:RD1_0128 REFSEQ: ref%7CYP_680549.1 PuhE Protein PMID: 17098896;Dbxref=Genbank:YP_001534879.1,GeneID:5713776;gbkey=CDS;gene=puhE;product=PuhE protein;protein_id=YP_001534879.1;transl_table=11
NC_009952.1	RefSeq	gene	3728081	3729295	.	+	.	ID=gene3585;Name=hemA1;Dbxref=GeneID:5713777;gbkey=Gene;gene=hemA1;locus_tag=Dshi_3546
NC_009952.1	RefSeq	CDS	3728081	3729295	.	+	0	ID=cds3536;Name=YP_001534880.1;Parent=gene3585;Note=catalyzes the formation of 5-aminolevulinate from succinyl-CoA and glycine;Dbxref=Genbank:YP_001534880.1,GeneID:5713777;gbkey=CDS;gene=hemA1;product=5-aminolevulinate synthase;protein_id=YP_001534880.1;transl_table=11
NC_009952.1	RefSeq	gene	3729391	3729831	.	+	.	ID=gene3586;Name=cycA2;Dbxref=GeneID:5713778;gbkey=Gene;gene=cycA2;locus_tag=Dshi_3547
NC_009952.1	RefSeq	CDS	3729391	3729831	.	+	0	ID=cds3537;Name=YP_001534881.1;Parent=gene3586;Note=JTo: PFAM: cytochrome c class I KEGG: jan:Jann_0148 cytochrome c%2C class I Swiss-Prot: cytochrome c class I%2C SignalP: signal peptide cleavage between VLA-DD%2C PSORT: inner membrane PMID: 8611557%2C 17098896;Dbxref=Genbank:YP_001534881.1,GeneID:5713778;gbkey=CDS;gene=cycA2;product=cytochrome c2;protein_id=YP_001534881.1;transl_table=11
NC_009952.1	RefSeq	gene	3729973	3731778	.	+	.	ID=gene3587;Name=Dshi_3548;Dbxref=GeneID:5713779;gbkey=Gene;locus_tag=Dshi_3548
NC_009952.1	RefSeq	CDS	3729973	3731778	.	+	0	ID=cds3538;Name=YP_001534882.1;Parent=gene3587;Note=PFAM: ABC transporter transmembrane region%3B ABC transporter related SMART: AAA ATPase KEGG: jan:Jann_4278 ABC transporter related;Dbxref=Genbank:YP_001534882.1,GeneID:5713779;gbkey=CDS;product=ATPase;protein_id=YP_001534882.1;transl_table=11
NC_009952.1	RefSeq	gene	3731871	3733085	.	+	.	ID=gene3588;Name=glpQ;Dbxref=GeneID:5713780;gbkey=Gene;gene=glpQ;locus_tag=Dshi_3549
NC_009952.1	RefSeq	CDS	3731871	3733085	.	+	0	ID=cds3539;Name=YP_001534883.1;Parent=gene3588;Note=PFAM: glycerophosphoryl diester phosphodiesterase KEGG: rde:RD1_1698 glycerophosphoryl diester phosphodiesterase family protein%2C putative PRK: glpQ%3B periplasmic;Dbxref=Genbank:YP_001534883.1,GeneID:5713780;gbkey=CDS;gene=glpQ;product=glycerophosphoryl diester phosphodiesterase;protein_id=YP_001534883.1;transl_table=11
NC_009952.1	RefSeq	gene	3733252	3733998	.	-	.	ID=gene3589;Name=ubiG1;Dbxref=GeneID:5713781;gbkey=Gene;gene=ubiG1;locus_tag=Dshi_3550
NC_009952.1	RefSeq	CDS	3733252	3733998	.	-	0	ID=cds3540;Name=YP_001534884.1;Parent=gene3589;Note=Involved in ubiquinone biosynthesis;Dbxref=Genbank:YP_001534884.1,GeneID:5713781;gbkey=CDS;gene=ubiG1;product=3-demethylubiquinone-9 3-methyltransferase;protein_id=YP_001534884.1;transl_table=11
NC_009952.1	RefSeq	gene	3734063	3735049	.	+	.	ID=gene3590;Name=pip;Dbxref=GeneID:5713782;gbkey=Gene;gene=pip;locus_tag=Dshi_3551
NC_009952.1	RefSeq	CDS	3734063	3735049	.	+	0	ID=cds3541;Name=YP_001534885.1;Parent=gene3590;Note=KEGG: sil:SPO0066 proline iminopeptidase TIGRFAM: proline iminopeptidase PFAM: alpha%2Fbeta hydrolase fold%3B PAP%3B Prolyl aminopeptidase%3B PIP;Dbxref=Genbank:YP_001534885.1,GeneID:5713782;gbkey=CDS;gene=pip;product=proline iminopeptidase;protein_id=YP_001534885.1;transl_table=11
NC_009952.1	RefSeq	gene	3735027	3736508	.	+	.	ID=gene3591;Name=pip;Dbxref=GeneID:5713783;gbkey=Gene;gene=pip;locus_tag=Dshi_3552
NC_009952.1	RefSeq	CDS	3735027	3736508	.	+	0	ID=cds3542;Name=YP_001534886.1;Parent=gene3591;Note=PFAM: extracellular solute-binding protein family 5;Dbxref=Genbank:YP_001534886.1,GeneID:5713783;gbkey=CDS;product=family 5 extracellular solute-binding protein;protein_id=YP_001534886.1;transl_table=11
NC_009952.1	RefSeq	gene	3736896	3738872	.	+	.	ID=gene3592;Name=acs;Dbxref=GeneID:5713784;gbkey=Gene;gene=acs;locus_tag=Dshi_3553
NC_009952.1	RefSeq	CDS	3736896	3738872	.	+	0	ID=cds3543;Name=YP_001534887.1;Parent=gene3592;Note=TIGRFAM: acetate--CoA ligase PFAM: AMP-dependent synthetase and ligase KEGG: rde:RD1_2332 acetyl-coenzyme A synthetase%3B Acyl-activating enzyme%3B Acetate--CoA ligase;Dbxref=Genbank:YP_001534887.1,GeneID:5713784;gbkey=CDS;gene=acs;product=acetyl-coenzyme A synthetase;protein_id=YP_001534887.1;transl_table=11
NC_009952.1	RefSeq	gene	3738878	3739567	.	+	.	ID=gene3593;Name=adk1;Dbxref=GeneID:5713785;gbkey=Gene;gene=adk1;locus_tag=Dshi_3554
NC_009952.1	RefSeq	CDS	3738878	3739567	.	+	0	ID=cds3544;Name=YP_001534888.1;Parent=gene3593;Note=PFAM: adenylate kinase%3B adenylate kinase lid domain protein KEGG: sil:SPO1812 adenylate kinase%3B ATP-AMP transphosphorylase;Dbxref=Genbank:YP_001534888.1,GeneID:5713785;gbkey=CDS;gene=adk1;product=adenylate kinase;protein_id=YP_001534888.1;transl_table=11
NC_009952.1	RefSeq	gene	3739687	3739944	.	+	.	ID=gene3594;Name=Dshi_3555;Dbxref=GeneID:5713786;gbkey=Gene;locus_tag=Dshi_3555
NC_009952.1	RefSeq	CDS	3739687	3739944	.	+	0	ID=cds3545;Name=YP_001534889.1;Parent=gene3594;Note=KEGG: psa:PST_3903 hypothetical protein;Dbxref=Genbank:YP_001534889.1,GeneID:5713786;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534889.1;transl_table=11
NC_009952.1	RefSeq	gene	3739962	3741758	.	+	.	ID=gene3595;Name=Dshi_3556;Dbxref=GeneID:5713787;gbkey=Gene;locus_tag=Dshi_3556
NC_009952.1	RefSeq	CDS	3739962	3741758	.	+	0	ID=cds3546;Name=YP_001534890.1;Parent=gene3595;Note=PFAM: Na%2B%2Fsolute symporter KEGG: sil:SPO1810 sodium%2Fsolute symporter family protein;Dbxref=Genbank:YP_001534890.1,GeneID:5713787;gbkey=CDS;product=sodium%2Fsolute symporter family protein;protein_id=YP_001534890.1;transl_table=11
NC_009952.1	RefSeq	gene	3741883	3743700	.	+	.	ID=gene3596;Name=Dshi_3557;Dbxref=GeneID:5713788;gbkey=Gene;locus_tag=Dshi_3557
NC_009952.1	RefSeq	CDS	3741883	3743700	.	+	0	ID=cds3547;Name=YP_001534891.1;Parent=gene3596;Note=PFAM: cyclic nucleotide-binding%3B CBS domain containing protein%3B protein of unknown function DUF294 nucleotidyltransferase putative KEGG: sil:SPO1809 nucleotidyltransferase%2FCBS%2Fcyclic nucleotide-binding domain protein;Dbxref=Genbank:YP_001534891.1,GeneID:5713788;gbkey=CDS;product=putative CBS domain and cyclic nucleotide-regulated nucleotidyltransferase;protein_id=YP_001534891.1;transl_table=11
NC_009952.1	RefSeq	gene	3743713	3744228	.	+	.	ID=gene3597;Name=Dshi_3558;Dbxref=GeneID:5713789;gbkey=Gene;locus_tag=Dshi_3558
NC_009952.1	RefSeq	CDS	3743713	3744228	.	+	0	ID=cds3548;Name=YP_001534892.1;Parent=gene3597;Note=KEGG: sil:SPO1808 hypothetical protein;Dbxref=Genbank:YP_001534892.1,GeneID:5713789;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534892.1;transl_table=11
NC_009952.1	RefSeq	gene	3744249	3745706	.	+	.	ID=gene3598;Name=dnaQ2;Dbxref=GeneID:5713790;gbkey=Gene;gene=dnaQ2;locus_tag=Dshi_3559
NC_009952.1	RefSeq	CDS	3744249	3745706	.	+	0	ID=cds3549;Name=YP_001534893.1;Parent=gene3598;Note=KEGG: sil:SPO1807 exonuclease%2C DNA polymerase III%2C epsilon subunit family TIGRFAM: DNA polymerase III%2C epsilon subunit PFAM: Exonuclease RNase T and DNA polymerase III SMART: Exonuclease COG0847;Dbxref=Genbank:YP_001534893.1,GeneID:5713790;gbkey=CDS;gene=dnaQ2;product=DNA polymerase III subunit epsilon;protein_id=YP_001534893.1;transl_table=11
NC_009952.1	RefSeq	gene	3745860	3746450	.	+	.	ID=gene3599;Name=Dshi_3560;Dbxref=GeneID:5713791;gbkey=Gene;locus_tag=Dshi_3560
NC_009952.1	RefSeq	CDS	3745860	3746450	.	+	0	ID=cds3550;Name=YP_001534894.1;Parent=gene3599;Note=in Streptococcus pneumoniae this gene was found to be essential%3B structure determination of the Streptococcus protein shows that it is similar to a number of other proteins;Dbxref=Genbank:YP_001534894.1,GeneID:5713791;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534894.1;transl_table=11
NC_009952.1	RefSeq	gene	3746464	3748098	.	+	.	ID=gene3600;Name=nusA;Dbxref=GeneID:5713792;gbkey=Gene;gene=nusA;locus_tag=Dshi_3561
NC_009952.1	RefSeq	CDS	3746464	3748098	.	+	0	ID=cds3551;Name=YP_001534895.1;Parent=gene3600;Note=modifies transcription through interactions with RNA polymerase affecting elongation%2C readthrough%2C termination%2C and antitermination;Dbxref=Genbank:YP_001534895.1,GeneID:5713792;gbkey=CDS;gene=nusA;product=transcription elongation factor NusA;protein_id=YP_001534895.1;transl_table=11
NC_009952.1	RefSeq	gene	3748122	3748760	.	+	.	ID=gene3601;Name=Dshi_3562;Dbxref=GeneID:5713793;gbkey=Gene;locus_tag=Dshi_3562
NC_009952.1	RefSeq	CDS	3748122	3748760	.	+	0	ID=cds3552;Name=YP_001534896.1;Parent=gene3601;Note=PFAM: protein of unknown function DUF448;Dbxref=Genbank:YP_001534896.1,GeneID:5713793;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534896.1;transl_table=11
NC_009952.1	RefSeq	gene	3748757	3751255	.	+	.	ID=gene3602;Name=infB;Dbxref=GeneID:5713794;gbkey=Gene;gene=infB;locus_tag=Dshi_3563
NC_009952.1	RefSeq	CDS	3748757	3751255	.	+	0	ID=cds3553;Name=YP_001534897.1;Parent=gene3602;Note=Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex;Dbxref=Genbank:YP_001534897.1,GeneID:5713794;gbkey=CDS;gene=infB;product=translation initiation factor IF-2;protein_id=YP_001534897.1;transl_table=11
NC_009952.1	RefSeq	gene	3751598	3751996	.	-	.	ID=gene3603;Name=mutT;Dbxref=GeneID:5713795;gbkey=Gene;gene=mutT;locus_tag=Dshi_3564
NC_009952.1	RefSeq	CDS	3751598	3751996	.	-	0	ID=cds3554;Name=YP_001534898.1;Parent=gene3603;Note=TIGRFAM: mutator MutT protein PFAM: NUDIX hydrolase KEGG: sil:SPO0060 mutator MutT protein;Dbxref=Genbank:YP_001534898.1,GeneID:5713795;gbkey=CDS;gene=mutT;product=mutator MutT protein;protein_id=YP_001534898.1;transl_table=11
NC_009952.1	RefSeq	gene	3751993	3753216	.	-	.	ID=gene3604;Name=argJ;Dbxref=GeneID:5713796;gbkey=Gene;gene=argJ;locus_tag=Dshi_3565
NC_009952.1	RefSeq	CDS	3751993	3753216	.	-	0	ID=cds3555;Name=YP_001534899.1;Parent=gene3604;Note=bifunctional arginine biosynthesis protein ArgJ%3B functions at the 1st and 5th steps in arginine biosynthesis%3B involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate;Dbxref=Genbank:YP_001534899.1,GeneID:5713796;gbkey=CDS;gene=argJ;product=bifunctional ornithine acetyltransferase%2FN-acetylglutamate synthase;protein_id=YP_001534899.1;transl_table=11
NC_009952.1	RefSeq	gene	3753294	3754136	.	-	.	ID=gene3605;Name=ppiC;Dbxref=GeneID:5713797;gbkey=Gene;gene=ppiC;locus_tag=Dshi_3566
NC_009952.1	RefSeq	CDS	3753294	3754136	.	-	0	ID=cds3556;Name=YP_001534900.1;Parent=gene3605;Note=PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase KEGG: jan:Jann_0290 PpiC-type peptidyl-prolyl cis-trans isomerase;Dbxref=Genbank:YP_001534900.1,GeneID:5713797;gbkey=CDS;gene=ppiC;product=PpiC-type peptidyl-prolyl cis-trans isomerase;protein_id=YP_001534900.1;transl_table=11
NC_009952.1	RefSeq	gene	3754364	3757090	.	+	.	ID=gene3606;Name=secA;Dbxref=GeneID:5713798;gbkey=Gene;gene=secA;locus_tag=Dshi_3567
NC_009952.1	RefSeq	CDS	3754364	3757090	.	+	0	ID=cds3557;Name=YP_001534901.1;Parent=gene3606;Note=functions in protein export%3B can interact with acidic membrane phospholipids and the SecYEG protein complex%3B binds to preproteins%3B binds to ATP and undergoes a conformational change to promote membrane insertion of SecA%2Fbound preprotein%3B ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane%3B additional proteins SecD%2FF%2FYajC aid SecA recycling%3B exists in an equilibrium between monomers and dimers%3B may possibly form higher order oligomers%3B proteins in this cluster correspond SecA1%3B SecA2 is not essential and seems to play a role in secretion of a subset of proteins;Dbxref=Genbank:YP_001534901.1,GeneID:5713798;gbkey=CDS;gene=secA;product=preprotein translocase subunit SecA;protein_id=YP_001534901.1;transl_table=11
NC_009952.1	RefSeq	gene	3757069	3758595	.	+	.	ID=gene3607;Name=secA;Dbxref=GeneID:5713799;gbkey=Gene;gene=secA;locus_tag=Dshi_3568
NC_009952.1	RefSeq	CDS	3757069	3758595	.	+	0	ID=cds3558;Name=YP_001534902.1;Parent=gene3607;Note=no domains found%2C significant blast hits only to JGI projects%2C good GC frame plot;Dbxref=Genbank:YP_001534902.1,GeneID:5713799;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534902.1;transl_table=11
NC_009952.1	RefSeq	gene	3758567	3759331	.	-	.	ID=gene3608;Name=radC;Dbxref=GeneID:5713800;gbkey=Gene;gene=radC;locus_tag=Dshi_3569
NC_009952.1	RefSeq	CDS	3758567	3759331	.	-	0	ID=cds3559;Name=YP_001534903.1;Parent=gene3608;Note=TIGRFAM: DNA repair protein radc PFAM: DNA repair protein RadC KEGG: pde:Pden_2304 DNA repair protein RadC;Dbxref=Genbank:YP_001534903.1,GeneID:5713800;gbkey=CDS;gene=radC;product=DNA repair protein RadC;protein_id=YP_001534903.1;transl_table=11
NC_009952.1	RefSeq	gene	3759367	3760518	.	-	.	ID=gene3609;Name=dnaJ;Dbxref=GeneID:5713801;gbkey=Gene;gene=dnaJ;locus_tag=Dshi_3570
NC_009952.1	RefSeq	CDS	3759367	3760518	.	-	0	ID=cds3560;Name=YP_001534904.1;Parent=gene3609;Note=chaperone Hsp40%3B co-chaperone with DnaK%3B Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins%2C also in an autonomous%2C dnaK-independent fashion;Dbxref=Genbank:YP_001534904.1,GeneID:5713801;gbkey=CDS;gene=dnaJ;product=chaperone protein DnaJ;protein_id=YP_001534904.1;transl_table=11
NC_009952.1	RefSeq	gene	3760594	3762513	.	-	.	ID=gene3610;Name=dnaK;Dbxref=GeneID:5713802;gbkey=Gene;gene=dnaK;locus_tag=Dshi_3571
NC_009952.1	RefSeq	CDS	3760594	3762513	.	-	0	ID=cds3561;Name=YP_001534905.1;Parent=gene3610;Note=heat shock protein 70%3B assists in folding of nascent polypeptide chains%3B refolding of misfolded proteins%3B utilizes ATPase activity to help fold%3B co-chaperones are DnaJ and GrpE%3B multiple copies in some bacteria;Dbxref=Genbank:YP_001534905.1,GeneID:5713802;gbkey=CDS;gene=dnaK;product=molecular chaperone DnaK;protein_id=YP_001534905.1;transl_table=11
NC_009952.1	RefSeq	gene	3762679	3763314	.	+	.	ID=gene3611;Name=alkB2;Dbxref=GeneID:5713803;gbkey=Gene;gene=alkB2;locus_tag=Dshi_3572
NC_009952.1	RefSeq	CDS	3762679	3763314	.	+	0	ID=cds3562;Name=YP_001534906.1;Parent=gene3611;Note=KEGG: rde:RD1_0377 alkylated DNA repair protein TIGRFAM: DNA alkylation damage repair protein AlkB%2C COG: Alkylated DNA repair protein%3B Alkylated DNA repair protein alkB;Dbxref=Genbank:YP_001534906.1,GeneID:5713803;gbkey=CDS;gene=alkB2;product=alpha-ketoglutarate-dependent dioxygenase alkB;protein_id=YP_001534906.1;transl_table=11
NC_009952.1	RefSeq	gene	3763345	3764166	.	-	.	ID=gene3612;Name=Dshi_3573;Dbxref=GeneID:5713804;gbkey=Gene;locus_tag=Dshi_3573
NC_009952.1	RefSeq	CDS	3763345	3764166	.	-	0	ID=cds3563;Name=YP_001534907.1;Parent=gene3612;Note=PFAM: ABC-2 type transporter KEGG: sil:SPO0040 ABC transporter%2C permease protein;Dbxref=Genbank:YP_001534907.1,GeneID:5713804;gbkey=CDS;product=putative ABC-2 type transporter;protein_id=YP_001534907.1;transl_table=11
NC_009952.1	RefSeq	gene	3764320	3765117	.	+	.	ID=gene3613;Name=cysQ;Dbxref=GeneID:5713805;gbkey=Gene;gene=cysQ;locus_tag=Dshi_3574
NC_009952.1	RefSeq	CDS	3764320	3765117	.	+	0	ID=cds3564;Name=YP_001534908.1;Parent=gene3613;Note=TIGRFAM: 3%282%29%2C5-bisphosphate nucleotidase PFAM: inositol monophosphatase KEGG: sil:SPO0039 3%282%29%2C5-bisphosphate nucleotidase;Dbxref=Genbank:YP_001534908.1,GeneID:5713805;gbkey=CDS;gene=cysQ;product=3%27%282%27%29%2C5%27-bisphosphate nucleotidase;protein_id=YP_001534908.1;transl_table=11
NC_009952.1	RefSeq	gene	3765117	3765917	.	+	.	ID=gene3614;Name=kdsB;Dbxref=GeneID:5713806;gbkey=Gene;gene=kdsB;locus_tag=Dshi_3575
NC_009952.1	RefSeq	CDS	3765117	3765917	.	+	0	ID=cds3565;Name=YP_001534909.1;Parent=gene3614;Note=CMP-2-keto-3-deoxyoctulosonic acid synthetase%3B catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS;Dbxref=Genbank:YP_001534909.1,GeneID:5713806;gbkey=CDS;gene=kdsB;product=3-deoxy-manno-octulosonate cytidylyltransferase;protein_id=YP_001534909.1;transl_table=11
NC_009952.1	RefSeq	gene	3765914	3767146	.	+	.	ID=gene3615;Name=kdsB;Dbxref=GeneID:5713807;gbkey=Gene;gene=kdsB;locus_tag=Dshi_3576
NC_009952.1	RefSeq	CDS	3765914	3767146	.	+	0	ID=cds3566;Name=YP_001534910.1;Parent=gene3615;Note=PFAM: glycosyl transferase family 2 KEGG: pde:Pden_2298 glycosyl transferase%2C family 2%3B family 2;Dbxref=Genbank:YP_001534910.1,GeneID:5713807;gbkey=CDS;product=glycosyl transferase family protein;protein_id=YP_001534910.1;transl_table=11
NC_009952.1	RefSeq	gene	3767288	3768184	.	+	.	ID=gene3616;Name=galU;Dbxref=GeneID:5713808;gbkey=Gene;gene=galU;locus_tag=Dshi_3577
NC_009952.1	RefSeq	CDS	3767288	3768184	.	+	0	ID=cds3567;Name=YP_001534911.1;Parent=gene3616;Note=TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase PFAM: Nucleotidyl transferase KEGG: jan:Jann_0218 UTP-glucose-1-phosphate uridylyltransferase%2CPMID:4284510;Dbxref=Genbank:YP_001534911.1,GeneID:5713808;gbkey=CDS;gene=galU;product=UTP-glucose-1-phosphate uridylyltransferase;protein_id=YP_001534911.1;transl_table=11
NC_009952.1	RefSeq	gene	3768197	3769435	.	+	.	ID=gene3617;Name=Dshi_3578;Dbxref=GeneID:5713809;gbkey=Gene;locus_tag=Dshi_3578
NC_009952.1	RefSeq	CDS	3768197	3769435	.	+	0	ID=cds3568;Name=YP_001534912.1;Parent=gene3617;Note=PFAM: glycosyl transferase group 1 KEGG: pde:Pden_2295 glycosyl transferase%2C group 1%2C COG0438 - Glycosyltransferase%3B group 1;Dbxref=Genbank:YP_001534912.1,GeneID:5713809;gbkey=CDS;product=glycosyl transferase family protein;protein_id=YP_001534912.1;transl_table=11
NC_009952.1	RefSeq	gene	3769483	3770499	.	+	.	ID=gene3618;Name=Dshi_3579;Dbxref=GeneID:5713810;gbkey=Gene;locus_tag=Dshi_3579
NC_009952.1	RefSeq	CDS	3769483	3770499	.	+	0	ID=cds3569;Name=YP_001534913.1;Parent=gene3618;Note=KEGG: sil:SPO0036 hypothetical protein;Dbxref=Genbank:YP_001534913.1,GeneID:5713810;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534913.1;transl_table=11
NC_009952.1	RefSeq	gene	3770718	3772205	.	+	.	ID=gene3619;Name=Dshi_3580;Dbxref=GeneID:5713811;gbkey=Gene;locus_tag=Dshi_3580
NC_009952.1	RefSeq	CDS	3770718	3772205	.	+	0	ID=cds3570;Name=YP_001534914.1;Parent=gene3619;Note=KEGG: sil:SPO0035 core-2%2FI-branching enzyme family protein;Dbxref=Genbank:YP_001534914.1,GeneID:5713811;gbkey=CDS;product=core-2%2FI-branching enzyme family protein;protein_id=YP_001534914.1;transl_table=11
NC_009952.1	RefSeq	gene	3772212	3773648	.	+	.	ID=gene3620;Name=Dshi_3581;Dbxref=GeneID:5713812;gbkey=Gene;locus_tag=Dshi_3581
NC_009952.1	RefSeq	CDS	3772212	3773648	.	+	0	ID=cds3571;Name=YP_001534915.1;Parent=gene3620;Note=KEGG: jan:Jann_0222 hypothetical protein;Dbxref=Genbank:YP_001534915.1,GeneID:5713812;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534915.1;transl_table=11
NC_009952.1	RefSeq	gene	3773660	3774124	.	-	.	ID=gene3621;Name=ptsN;Dbxref=GeneID:5713813;gbkey=Gene;gene=ptsN;locus_tag=Dshi_3582
NC_009952.1	RefSeq	CDS	3773660	3774124	.	-	0	ID=cds3572;Name=YP_001534916.1;Parent=gene3621;Note=PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2 KEGG: rsq:Rsph17025_2769 PTS IIA-like nitrogen-regulatory protein PtsN%2C COG1762 - Phosphotransferase system mannitol%2Ffructose-specific IIA domain %28Ntr-type%29;Dbxref=Genbank:YP_001534916.1,GeneID:5713813;gbkey=CDS;gene=ptsN;product=PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN;protein_id=YP_001534916.1;transl_table=11
NC_009952.1	RefSeq	gene	3774163	3774738	.	-	.	ID=gene3622;Name=Dshi_3583;Dbxref=GeneID:5713814;gbkey=Gene;locus_tag=Dshi_3583
NC_009952.1	RefSeq	CDS	3774163	3774738	.	-	0	ID=cds3573;Name=YP_001534917.1;Parent=gene3622;Note=TIGRFAM: ribosomal subunit interface protein PFAM: sigma 54 modulation protein%2Fribosomal protein S30EA KEGG: rde:RD1_0372 sigma-54 modulation protein%2C putative;Dbxref=Genbank:YP_001534917.1,GeneID:5713814;gbkey=CDS;product=30S ribosomal protein S30;protein_id=YP_001534917.1;transl_table=11
NC_009952.1	RefSeq	gene	3774813	3776129	.	-	.	ID=gene3623;Name=rpoN;Dbxref=GeneID:5713815;gbkey=Gene;gene=rpoN;locus_tag=Dshi_3584
NC_009952.1	RefSeq	CDS	3774813	3776129	.	-	0	ID=cds3574;Name=YP_001534918.1;Parent=gene3623;Note=TIGRFAM: RNA polymerase sigma-54 factor%2C RpoN PFAM: sigma-54 factor%3B sigma-54 factor core-binding region%3B sigma-54 DNA-binding domain protein KEGG: rsh:Rsph17029_2179 RNA polymerase%2C sigma 54 subunit%2C RpoN;Dbxref=Genbank:YP_001534918.1,GeneID:5713815;gbkey=CDS;gene=rpoN;product=RNA polymerase sigma-54 factor;protein_id=YP_001534918.1;transl_table=11
NC_009952.1	RefSeq	gene	3776138	3776902	.	-	.	ID=gene3624;Name=Dshi_3585;Dbxref=GeneID:5713816;gbkey=Gene;locus_tag=Dshi_3585
NC_009952.1	RefSeq	CDS	3776138	3776902	.	-	0	ID=cds3575;Name=YP_001534919.1;Parent=gene3624;Note=pfam00005: ABC_tran%2C COG1137 - ABC-type %28unclassified%29 transport system%2C ATPase component%2C BLAST hits to several ABC transporter%2C ATP-binding protein;Dbxref=Genbank:YP_001534919.1,GeneID:5713816;gbkey=CDS;product=ATPase;protein_id=YP_001534919.1;transl_table=11
NC_009952.1	RefSeq	gene	3776899	3777411	.	-	.	ID=gene3625;Name=Dshi_3586;Dbxref=GeneID:5713817;gbkey=Gene;locus_tag=Dshi_3586
NC_009952.1	RefSeq	CDS	3776899	3777411	.	-	0	ID=cds3576;Name=YP_001534920.1;Parent=gene3625;Note=PFAM: OstA family protein KEGG: rsh:Rsph17029_2816 OstA family protein%2C COG1934 - Uncharacterized protein conserved in bacteria;Dbxref=Genbank:YP_001534920.1,GeneID:5713817;gbkey=CDS;product=OstA family protein;protein_id=YP_001534920.1;transl_table=11
NC_009952.1	RefSeq	gene	3777425	3778027	.	-	.	ID=gene3626;Name=Dshi_3587;Dbxref=GeneID:5713818;gbkey=Gene;locus_tag=Dshi_3587
NC_009952.1	RefSeq	CDS	3777425	3778027	.	-	0	ID=cds3577;Name=YP_001534921.1;Parent=gene3626;Note=similar hit in Roseovarius%2C not conserved throughout many species;Dbxref=Genbank:YP_001534921.1,GeneID:5713818;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534921.1;transl_table=11
NC_009952.1	RefSeq	gene	3778031	3778993	.	-	.	ID=gene3627;Name=yrbH;Dbxref=GeneID:5713819;gbkey=Gene;gene=yrbH;locus_tag=Dshi_3588
NC_009952.1	RefSeq	CDS	3778031	3778993	.	-	0	ID=cds3578;Name=YP_001534922.1;Parent=gene3627;Note=KEGG: rde:RD1_0368 arabinose 5-phosphate isomerase TIGRFAM: KpsF%2FGutQ family protein PFAM: CBS domain containing protein%3B sugar isomerase %28SIS%29;Dbxref=Genbank:YP_001534922.1,GeneID:5713819;gbkey=CDS;gene=yrbH;product=arabinose-5-phosphate isomerase;protein_id=YP_001534922.1;transl_table=11
NC_009952.1	RefSeq	gene	3779003	3779614	.	-	.	ID=gene3628;Name=Dshi_3589;Dbxref=GeneID:5713820;gbkey=Gene;locus_tag=Dshi_3589
NC_009952.1	RefSeq	CDS	3779003	3779614	.	-	0	ID=cds3579;Name=YP_001534923.1;Parent=gene3628;Note=PFAM: 3-5 exonuclease;Dbxref=Genbank:YP_001534923.1,GeneID:5713820;gbkey=CDS;product=3%27-5%27 exonuclease;protein_id=YP_001534923.1;transl_table=11
NC_009952.1	RefSeq	gene	3779657	3779743	.	-	.	ID=gene3629;Name=Dshi_6050;Dbxref=GeneID:5713821;gbkey=Gene;locus_tag=Dshi_6050
NC_009952.1	RefSeq	tRNA	3779657	3779743	.	-	.	ID=rna49;Parent=gene3629;Dbxref=GeneID:5713821;codons=19;gbkey=tRNA;product=tRNA-Leu
NC_009952.1	RefSeq	exon	3779657	3779743	.	-	.	ID=id55;Parent=rna49;Dbxref=GeneID:5713821;codons=19;gbkey=tRNA;product=tRNA-Leu
NC_009952.1	RefSeq	gene	3780019	3781002	.	+	.	ID=gene3630;Name=Dshi_3590;Dbxref=GeneID:5713822;gbkey=Gene;locus_tag=Dshi_3590
NC_009952.1	RefSeq	CDS	3780019	3781002	.	+	0	ID=cds3580;Name=YP_001534924.1;Parent=gene3630;Note=pfam07993: NAD_binding_4 domain%2C COG0702 - Predicted nucleoside-diphosphate-sugar epimerases;Dbxref=Genbank:YP_001534924.1,GeneID:5713822;gbkey=CDS;product=ubiquinone dependent NADH dehydrogenase;protein_id=YP_001534924.1;transl_table=11
NC_009952.1	RefSeq	gene	3781025	3782716	.	-	.	ID=gene3631;Name=Dshi_3591;Dbxref=GeneID:5713823;gbkey=Gene;locus_tag=Dshi_3591
NC_009952.1	RefSeq	CDS	3781025	3782716	.	-	0	ID=cds3581;Name=YP_001534925.1;Parent=gene3631;Note=domain hit: Abi%2C transmembrane helices predicted%2C weak BLAST hits;Dbxref=Genbank:YP_001534925.1,GeneID:5713823;gbkey=CDS;product=CAAX amino terminal protease family protein;protein_id=YP_001534925.1;transl_table=11
NC_009952.1	RefSeq	gene	3783102	3788285	.	-	.	ID=gene3632;Name=Dshi_3592;Dbxref=GeneID:5713824;gbkey=Gene;locus_tag=Dshi_3592
NC_009952.1	RefSeq	CDS	3783102	3788285	.	-	0	ID=cds3582;Name=YP_001534926.1;Parent=gene3632;Note=no domain hits%2C no BLAST hit%2C good GC frame plot over whole length;Dbxref=Genbank:YP_001534926.1,GeneID:5713824;gbkey=CDS;product=hypothetical protein;protein_id=YP_001534926.1;transl_table=11
NC_009952.1	RefSeq	gene	3788688	3789491	.	-	.	ID=gene3633;Name=uppP;Dbxref=GeneID:5713825;gbkey=Gene;gene=uppP;locus_tag=Dshi_3593
NC_009952.1	RefSeq	CDS	3788688	3789491	.	-	0	ID=cds3583;Name=YP_001534927.1;Parent=gene3633;Note=BacA%3B phosphatase activity in Escherichia coli not kinase%3B involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell;Dbxref=Genbank:YP_001534927.1,GeneID:5713825;gbkey=CDS;gene=uppP;product=undecaprenyl pyrophosphate phosphatase;protein_id=YP_001534927.1;transl_table=11
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