REM -------------------------------------------------------------------- 6A3Z REM 6A3Z REM STRIDE: Knowledge-based secondary structure assignment 6A3Z REM Please cite: D.Frishman & P.Argos, Proteins XX, XXX-XXX, 1995 6A3Z REM 6A3Z REM Residue accessible surface area calculation 6A3Z REM Please cite: F.Eisenhaber & P.Argos, J.Comp.Chem. 14, 1272-1280, 1993 6A3Z REM F.Eisenhaber et al., J.Comp.Chem., 1994, submitted 6A3Z REM 6A3Z REM ------------------------ General information ----------------------- 6A3Z REM 6A3Z HDR METAL BINDING PROTEIN 18-JUN-18 6A3Z 6A3Z CMP MOL_ID: 1; 6A3Z CMP MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE SYNOVIOLIN; 6A3Z CMP CHAIN: A; 6A3Z CMP FRAGMENT: ZINC FINGER DOMAIN; 6A3Z CMP SYNONYM: RING-TYPE E3 UBIQUITIN TRANSFERASE SYNOVIOLIN,SYNOV 6A3Z CMP APOPTOSIS INHIBITOR 1; 6A3Z CMP EC: 2.3.2.27; 6A3Z CMP ENGINEERED: YES 6A3Z SRC MOL_ID: 1; 6A3Z SRC SYNTHETIC: YES; 6A3Z SRC ORGANISM_SCIENTIFIC: HOMO SAPIENS; 6A3Z SRC ORGANISM_COMMON: HUMAN; 6A3Z SRC ORGANISM_TAXID: 9606 6A3Z AUT K.MIYAMOTO 6A3Z REM 6A3Z REM -------------------- Secondary structure summary ------------------- 6A3Z REM 6A3Z CHN /home/proj/stride/tmp/tmpC4i2hLpdb A 6A3Z REM 6A3Z REM . . . . . 6A3Z SEQ 1 ATPEELQAMDNVCIICREEMVTGAKRLPCNHIFHTSCLRSWFQRQQTCPT 50 6A3Z STR HHHHHHTTTTTTTTT EEEETTTEEEEHHHHHHHHTTT TTT 6A3Z REM 6A3Z REM 6A3Z SEQ 51 CRMDVL 56 6A3Z STR TT 6A3Z REM 6A3Z REM 6A3Z REM 6A3Z LOC AlphaHelix PRO 3 A ALA 8 A 6A3Z LOC AlphaHelix THR 35 A PHE 42 A 6A3Z LOC Strand ALA 24 A LEU 27 A 6A3Z LOC Strand HIS 31 A HIS 34 A 6A3Z LOC TurnIV ALA 8 A ASN 11 A 6A3Z LOC TurnIV MET 9 A VAL 12 A 6A3Z LOC TurnIV CYS 13 A CYS 16 A 6A3Z LOC TurnI ILE 14 A ARG 17 A 6A3Z LOC TurnI LEU 27 A ASN 30 A 6A3Z LOC TurnIV PHE 42 A GLN 45 A 6A3Z LOC TurnIV CYS 48 A CYS 51 A 6A3Z LOC TurnIV PRO 49 A ARG 52 A 6A3Z REM 6A3Z REM --------------- Detailed secondary structure assignment------------- 6A3Z REM 6A3Z REM |---Residue---| |--Structure--| |-Phi-| |-Psi-| |-Area-| 6A3Z ASG ALA A 1 1 C Coil 360.00 171.97 69.9 6A3Z ASG THR A 2 2 C Coil -113.13 159.94 66.3 6A3Z ASG PRO A 3 3 H AlphaHelix -69.78 -25.96 106.7 6A3Z ASG GLU A 4 4 H AlphaHelix -77.35 -38.93 156.3 6A3Z ASG GLU A 5 5 H AlphaHelix -74.71 -37.74 54.9 6A3Z ASG LEU A 6 6 H AlphaHelix -65.36 -41.74 21.8 6A3Z ASG GLN A 7 7 H AlphaHelix -70.77 -19.44 155.9 6A3Z ASG ALA A 8 8 H AlphaHelix -82.59 7.10 75.0 6A3Z ASG MET A 9 9 T Turn -150.42 33.48 37.0 6A3Z ASG ASP A 10 10 T Turn 62.39 8.12 130.3 6A3Z ASG ASN A 11 11 T Turn 34.31 36.96 34.5 6A3Z ASG VAL A 12 12 T Turn -118.15 127.59 42.6 6A3Z ASG CYS A 13 13 T Turn -68.96 116.64 0.0 6A3Z ASG ILE A 14 14 T Turn -66.07 -46.54 41.2 6A3Z ASG ILE A 15 15 T Turn -33.85 -49.88 40.7 6A3Z ASG CYS A 16 16 T Turn -115.76 -3.29 53.1 6A3Z ASG ARG A 17 17 T Turn 49.26 62.40 182.3 6A3Z ASG GLU A 18 18 C Coil -122.20 -94.50 137.1 6A3Z ASG GLU A 19 19 C Coil -170.75 151.25 111.1 6A3Z ASG MET A 20 20 C Coil -130.13 100.70 3.5 6A3Z ASG VAL A 21 21 C Coil -100.63 -28.54 112.8 6A3Z ASG THR A 22 22 C Coil -175.23 139.00 125.5 6A3Z ASG GLY A 23 23 C Coil 99.45 50.24 54.6 6A3Z ASG ALA A 24 24 E Strand -148.12 164.66 15.8 6A3Z ASG LYS A 25 25 E Strand -112.95 -178.06 121.3 6A3Z ASG ARG A 26 26 E Strand -130.15 130.21 128.1 6A3Z ASG LEU A 27 27 E Strand -84.36 152.73 15.2 6A3Z ASG PRO A 28 28 T Turn -69.71 2.79 112.4 6A3Z ASG CYS A 29 29 T Turn -106.30 -0.20 25.6 6A3Z ASG ASN A 30 30 T Turn 82.81 48.59 94.9 6A3Z ASG HIS A 31 31 E Strand -148.04 109.40 49.5 6A3Z ASG ILE A 32 32 E Strand -94.53 140.74 1.2 6A3Z ASG PHE A 33 33 E Strand -149.86 154.15 5.4 6A3Z ASG HIS A 34 34 E Strand -42.30 137.26 43.3 6A3Z ASG THR A 35 35 H AlphaHelix -66.17 -17.96 43.8 6A3Z ASG SER A 36 36 H AlphaHelix -94.00 -32.06 96.1 6A3Z ASG CYS A 37 37 H AlphaHelix -74.51 -31.29 27.2 6A3Z ASG LEU A 38 38 H AlphaHelix -70.94 -66.41 11.0 6A3Z ASG ARG A 39 39 H AlphaHelix -48.19 -25.80 200.0 6A3Z ASG SER A 40 40 H AlphaHelix -92.77 -26.27 80.2 6A3Z ASG TRP A 41 41 H AlphaHelix -77.39 -44.04 75.6 6A3Z ASG PHE A 42 42 H AlphaHelix -70.00 -20.23 32.9 6A3Z ASG GLN A 43 43 T Turn -67.00 -9.14 166.4 6A3Z ASG ARG A 44 44 T Turn -134.33 -34.09 208.7 6A3Z ASG GLN A 45 45 T Turn -128.97 103.91 95.5 6A3Z ASG GLN A 46 46 C Coil -75.95 50.89 101.4 6A3Z ASG THR A 47 47 C Coil -152.90 141.84 43.0 6A3Z ASG CYS A 48 48 T Turn -48.07 138.73 2.9 6A3Z ASG PRO A 49 49 T Turn -69.79 2.33 17.3 6A3Z ASG THR A 50 50 T Turn -134.91 -51.41 78.5 6A3Z ASG CYS A 51 51 T Turn -99.67 -2.62 40.4 6A3Z ASG ARG A 52 52 T Turn 34.27 42.52 192.5 6A3Z ASG MET A 53 53 C Coil -102.49 116.08 93.8 6A3Z ASG ASP A 54 54 C Coil -34.49 126.25 105.2 6A3Z ASG VAL A 55 55 C Coil -126.11 -45.07 34.6 6A3Z ASG LEU A 56 56 C Coil -56.93 360.00 129.0 6A3Z