RID: 3V2JM1D0013 Job Title:R1AB_BCHK5 P0C6W4 Replicase polyprotein Program: BLASTP Database: nr All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Query #1: R1AB_BCHK5 P0C6W4 Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein) (Host translation inhibitor nsp1) (nsp1) (Leader protein) Query ID: lcl|Query_183275 Length: 195 Sequences producing significant alignments: Scientific Common Max Total Query E Per. Acc. Description Name Name Taxid Score Score cover Value Ident Len Accession nsp1 [Pipistrellus bat coronavirus HKU5] Pipistrellus... NA 694008 403 403 100% 7e-143 100.00 195 YP_009944339.1 ORF1a [Pipistrellus bat coronavirus HKU5] Pipistrellus... NA 694008 414 414 100% 5e-131 100.00 4482 AWH65909.1 ORF1a polyprotein [Pipistrellus bat coronavirus HKU5] Pipistrellus... NA 694008 414 414 100% 5e-131 100.00 4481 YP_009944337.1 ORF1ab [Pipistrellus bat coronavirus HKU5] Pipistrellus... NA 694008 413 413 100% 1e-130 100.00 7183 AWH65908.1 orf1ab polyprotein [Pipistrellus abramus bat coronavirus... Pipistrellus... NA 2691590 413 413 100% 1e-130 100.00 7179 QHA24686.1 ORF1ab polyprotein [Pipistrellus bat coronavirus HKU5] Pipistrellus... NA 694008 413 413 100% 1e-130 100.00 7182 YP_001039961.1 orf1ab polyprotein [Bat coronavirus HKU5-2] Bat coronavi... NA 424364 413 413 100% 1e-130 100.00 7179 ABN10883.1 orf1ab polyprotein [Bat coronavirus HKU5-3] Bat coronavi... NA 424365 413 413 100% 1e-130 100.00 7179 ABN10892.1 orf1ab polyprotein [Bat coronavirus HKU5-5] Bat coronavi... NA 424366 413 413 100% 1e-130 100.00 7179 ABN10901.1 ORF1a [Pipistrellus bat coronavirus HKU5] Pipistrellus... NA 694008 411 411 100% 4e-130 99.49 4481 AWH65920.1 ORF1ab polyprotein [BtPa-BetaCoV/GD2013] BtPa-BetaCoV... NA 1503295 411 411 100% 7e-130 99.49 7182 AIA62342.1 ORF1ab [Pipistrellus bat coronavirus HKU5] Pipistrellus... NA 694008 410 410 100% 8e-130 99.49 7182 AWH65919.1 ORF1a [Pipistrellus bat coronavirus HKU5] Pipistrellus... NA 694008 408 408 100% 6e-129 98.46 4500 AWH65931.1 ORF1ab [Pipistrellus bat coronavirus HKU5] Pipistrellus... NA 694008 407 407 100% 1e-128 98.46 7198 AWH65930.1 orf1ab polyprotein [Wenzhou Pipistrellus abramus betacoronavir... Wenzhou Pipi... NA 2877478 405 405 100% 1e-127 97.95 7179 UBB42430.1 orf1a polyprotein [Betacoronavirus sp.] Betacoronavi... NA 1928434 295 295 100% 2e-89 71.79 4449 WDE20338.1 ORF1A polyprotein [Middle East respiratory syndrome-related... Middle East ... NA 1335626 295 295 100% 2e-89 71.79 4449 USL83010.1 orf1a polyprotein [Betacoronavirus sp.] Betacoronavi... NA 1928434 295 295 100% 2e-89 71.79 4455 WDE20355.1 ORF1AB polyprotein [Middle East respiratory syndrome-related... Middle East ... NA 1335626 294 294 100% 4e-89 71.79 7137 USL83009.1 ORF1ab polyprotein [Middle East respiratory syndrome-related... Middle East ... NA 1335626 280 280 100% 5e-84 68.72 7076 AUM60013.1 ORF1ab polyprotein [Middle East respiratory syndrome-related... Middle East ... NA 1335626 276 276 100% 6e-83 68.21 7076 AUM60023.1 nsp1 [Tylonycteris bat coronavirus HKU4] Tylonycteris... NA 694007 238 238 97% 2e-77 58.12 195 YP_009944310.1 nsp1 protein [Middle East respiratory syndrome-related... Middle East ... NA 1335626 226 226 100% 7e-73 58.97 193 YP_009047213.1 ORF1a polyprotein [Bat coronavirus] Bat coronavirus NA 1508220 247 247 100% 9e-73 62.05 4388 YP_009361855.1 ORF1a [Middle East respiratory syndrome-related coronavirus] Middle East ... NA 1335626 247 247 100% 1e-72 62.24 4437 USF97408.1 ORF1ab polyprotein [Bat coronavirus] Bat coronavirus NA 1508220 247 247 100% 1e-72 62.05 7076 YP_009361856.2 ORF1ab [Middle East respiratory syndrome-related coronavirus] Middle East ... NA 1335626 246 246 100% 2e-72 62.24 7125 USF97407.1 ORF1a [Middle East respiratory syndrome-related coronavirus] Middle East ... NA 1335626 246 246 100% 4e-72 61.73 4437 USF97417.1 ORF1ab [Middle East respiratory syndrome-related coronavirus] Middle East ... NA 1335626 245 245 100% 5e-72 61.73 7125 USF97419.1 ORF1a polyprotein [Coronavirus Neoromicia/PML-PHE1/RSA/2011] Coronavirus ... NA 1368314 243 243 100% 2e-71 61.54 4394 AIG13097.1 ORF1ab polyprotein [Coronavirus Neoromicia/PML-PHE1/RSA/2011] Coronavirus ... NA 1368314 243 243 100% 3e-71 61.54 7082 AGR87639.3 ORF1ab polyprotein [Middle East respiratory syndrome-related... Middle East ... NA 1335626 243 243 100% 3e-71 61.54 7085 ATQ39389.1 polyprotein 1a [Hypsugo bat coronavirus HKU25] Hypsugo bat ... NA 2020423 241 241 100% 1e-70 60.50 4525 ASL68952.1 ORF1a [Middle East respiratory syndrome-related coronavirus] Middle East ... NA 1335626 241 241 100% 1e-70 60.50 4525 AWH65942.1 replicase polyprotein 1ab [Hypsugo bat coronavirus HKU25] Hypsugo bat ... NA 2020423 241 241 100% 2e-70 60.50 7212 ASL68951.1 ORF1ab [Middle East respiratory syndrome-related coronavirus] Middle East ... NA 1335626 241 241 100% 2e-70 60.50 7212 AWH65941.1 ORF1ab [Merbecovirus sp.] Merbecovirus... NA 2832974 241 241 100% 2e-70 61.31 7107 BDD37131.1 ORF1a polyprotein [Tylonycteris bat coronavirus HKU4] Tylonycteris... NA 694007 241 241 97% 2e-70 58.12 4434 YP_009944308.1 ORF1a [Tylonycteris bat coronavirus HKU4] Tylonycteris... NA 694007 240 240 97% 2e-70 58.12 4444 AWH65898.1 ORF1ab [Tylonycteris bat coronavirus HKU4] Tylonycteris... NA 694007 240 240 97% 3e-70 58.12 7129 AWH65897.1 orf1ab polyprotein [Bat coronavirus HKU4-2] Bat coronavi... NA 424360 240 240 97% 3e-70 58.12 7119 ABN10847.1 ORF1ab polyprotein [Tylonycteris bat coronavirus HKU4] Tylonycteris... NA 694007 240 240 97% 3e-70 58.12 7119 YP_001039952.1 orf1ab polyprotein [Bat coronavirus HKU4-4] Bat coronavi... NA 424362 240 240 97% 4e-70 58.12 7129 ABN10865.1 ORF1a [Middle East respiratory syndrome-related coronavirus] Middle East ... NA 1335626 239 239 100% 4e-70 61.31 4523 AWH65953.1 ORF1ab [Middle East respiratory syndrome-related coronavirus] Middle East ... NA 1335626 239 239 100% 6e-70 61.31 7210 AWH65952.1 polyprotein ab [Tylonycteris bat coronavirus HKU4] Tylonycteris... NA 694007 239 239 97% 8e-70 58.12 7129 QQD78082.1 ORF1ab polyprotein [Pangolin coronavirus... Pangolin cor... NA 2929177 239 239 97% 8e-70 58.12 7120 UJZ92541.1 ORF1a polyprotein [Bat coronavirus] Bat coronavirus NA 1508220 239 239 100% 1e-69 61.22 4492 BBJ36007.1 polyprotein 1a [Hypsugo bat coronavirus HKU25] Hypsugo bat ... NA 2020423 238 238 100% 1e-69 60.00 4525 ASL68942.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Bat coronavi... NA 389230 238 238 97% 1e-69 58.64 4441 P0C6F7.1 ORF1ab polyprotein [Bat coronavirus] Bat coronavirus NA 1508220 238 238 100% 1e-69 61.22 7179 BBJ36006.1 ORF1ab polyprotein [BtVs-BetaCoV/SC2013] BtVs-BetaCoV... NA 1495253 238 238 100% 1e-69 61.22 7179 AHY61336.1 ORF1ab polyprotein [Merbecovirus sp.] Merbecovirus... NA 2832974 238 238 100% 1e-69 60.51 7179 BDI08819.1 ORF1ab polyprotein [Merbecovirus sp.] Merbecovirus... NA 2832974 238 238 100% 2e-69 61.22 7179 BDI08828.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Bat coronavi... NA 389230 238 238 97% 2e-69 58.64 7126 P0C6W1.1 ORF1a [Middle East respiratory syndrome-related coronavirus] Middle East ... NA 1335626 230 230 100% 2e-69 59.49 616 AHI48797.1 replicase polyprotein 1ab [Hypsugo bat coronavirus HKU25] Hypsugo bat ... NA 2020423 238 238 100% 2e-69 60.00 7212 ASL68940.1 ORF1a [Middle East respiratory syndrome-related coronavirus] Middle East ... NA 1335626 237 237 100% 3e-69 60.91 4419 AVV62536.1 ORF1ab [Middle East respiratory syndrome-related coronavirus] Middle East ... NA 1335626 237 237 100% 4e-69 60.91 7107 AVV62535.1 ORF1a protein [Middle East respiratory syndrome-related... Middle East ... NA 1335626 236 236 100% 8e-69 60.91 4426 WCZ55711.1 P1ab protein [Bat coronavirus] Bat coronavirus NA 1508220 236 236 97% 9e-69 57.59 7132 ANA96038.1 ORF1a polyprotein [Tylonycteris robustula coronavirus] Tylonycteris... NA 2971263 236 236 97% 1e-68 57.59 4446 UUT43905.1 ORF1ab polyprotein [BtTp-BetaCoV/GX2012] BtTp-BetaCoV... NA 1503304 236 236 97% 1e-68 57.07 7127 AIA62351.1 ORF1a [Middle East respiratory syndrome-related coronavirus] Middle East ... NA 1335626 235 235 100% 1e-68 61.62 4405 AVV62525.1 ORF1ab polyprotein [Tylonycteris robustula coronavirus] Tylonycteris... NA 2971263 235 235 97% 1e-68 57.59 7131 UUT43900.1 ORF1ab [Middle East respiratory syndrome-related coronavirus] Middle East ... NA 1335626 235 235 100% 2e-68 61.62 7093 AVV62524.1 ORF1a [Tylonycteris bat coronavirus HKU4] Tylonycteris... NA 694007 234 234 97% 2e-68 57.07 4442 AWH65887.1 ORF1ab [Tylonycteris bat coronavirus HKU4] Tylonycteris... NA 694007 234 234 97% 3e-68 57.07 7126 AWH65886.1 ORF1a [Tylonycteris bat coronavirus HKU4] Tylonycteris... NA 694007 234 234 97% 3e-68 56.54 4442 AWH65876.1 ORF1a [Middle East respiratory syndrome-related coronavirus] Middle East ... NA 1335626 227 227 100% 3e-68 58.97 630 AHI48783.1 ORF1a [Middle East respiratory syndrome-related coronavirus] Middle East ... NA 1335626 227 227 100% 4e-68 58.97 630 AHI48782.1 ORF1ab [Tylonycteris bat coronavirus HKU4] Tylonycteris... NA 694007 234 234 97% 4e-68 56.54 7127 AWH65875.1 ORF1ab [Middle East respiratory syndrome-related coronavirus] Middle East ... NA 1335626 227 227 100% 5e-68 58.97 642 AGV08464.1 ORF1a [Middle East respiratory syndrome-related coronavirus] Middle East ... NA 1335626 227 227 100% 2e-67 58.97 738 AHI48793.1 ORF1ab [Middle East respiratory syndrome-related coronavirus] Middle East ... NA 1335626 225 225 100% 2e-67 58.46 627 AGV08403.1 ORF1a [Middle East respiratory syndrome-related coronavirus] Middle East ... NA 1335626 231 231 100% 4e-67 59.49 4391 AHI48761.1 ORF1a [Middle East respiratory syndrome-related coronavirus] Middle East ... NA 1335626 231 231 100% 4e-67 59.49 4391 AHI48757.1 ORF1ab [Middle East respiratory syndrome-related coronavirus] Middle East ... NA 1335626 231 231 100% 4e-67 59.49 7078 ATG84820.1 ORF1a [Middle East respiratory syndrome-related coronavirus] Middle East ... NA 1335626 231 231 100% 4e-67 59.49 4391 ATG84821.1 ORF1ab [Middle East respiratory syndrome-related coronavirus] Middle East ... NA 1335626 231 231 100% 4e-67 59.49 6096 AHI48760.1 ORF1ab [Middle East respiratory syndrome-related coronavirus] Middle East ... NA 1335626 231 231 100% 4e-67 59.49 6313 AHI48756.1 ORF1a [Middle East respiratory syndrome-related coronavirus] Middle East ... NA 1335626 231 231 100% 5e-67 59.49 4390 AVN89353.1 orf1ab polyprotein [Tylonycteris pachypus bat coronavirus... Tylonycteris... NA 2691589 231 231 97% 6e-67 56.54 7129 QHA24677.1 ORF1a [Middle East respiratory syndrome-related coronavirus] Middle East ... NA 1335626 231 231 100% 6e-67 59.49 4390 AVN89375.1 ORF1ab [Middle East respiratory syndrome-related coronavirus] Middle East ... NA 1335626 231 231 100% 7e-67 59.49 7077 AVN89352.1 ORF1a [Middle East respiratory syndrome-related coronavirus] Middle East ... NA 1335626 231 231 100% 7e-67 59.49 4390 AVN89419.1 ORF1a [Middle East respiratory syndrome-related coronavirus] Middle East ... NA 1335626 231 231 100% 7e-67 59.49 4390 AVN89441.1 ORF1a [Middle East respiratory syndrome-related coronavirus] Middle East ... NA 1335626 230 230 100% 7e-67 59.49 4390 AVN89430.1 ORF1a [Middle East respiratory syndrome-related coronavirus] Middle East ... NA 1335626 230 230 100% 7e-67 59.49 4390 AVN89397.1 1A polyprotein [Middle East respiratory syndrome-related... Middle East ... NA 1335626 230 230 100% 8e-67 59.49 4391 ASU90889.1 ORF1a [Middle East respiratory syndrome-related coronavirus] Middle East ... NA 1335626 230 230 100% 8e-67 59.49 4390 AVN89386.1 ORF1a [Middle East respiratory syndrome-related coronavirus] Middle East ... NA 1335626 230 230 100% 9e-67 59.49 4390 AVN89452.1 ORF1a [Middle East respiratory syndrome-related coronavirus] Middle East ... NA 1335626 228 228 100% 9e-67 58.97 916 AHI48778.1 ORF1ab [Middle East respiratory syndrome-related coronavirus] Middle East ... NA 1335626 230 230 100% 1e-66 59.49 7077 AVN89451.1 1AB polyprotein [Middle East respiratory syndrome-related... Middle East ... NA 1335626 230 230 100% 1e-66 59.49 7078 ASU90888.1 ORF1ab [Middle East respiratory syndrome-related coronavirus] Middle East ... NA 1335626 230 230 100% 1e-66 59.49 7077 AVN89396.1 ORF1ab [Middle East respiratory syndrome-related coronavirus] Middle East ... NA 1335626 230 230 100% 1e-66 59.49 7077 AVN89429.1 ORF1ab [Middle East respiratory syndrome-related coronavirus] Middle East ... NA 1335626 230 230 100% 1e-66 59.49 7077 AVN89385.1 ORF1ab [Middle East respiratory syndrome-related coronavirus] Middle East ... NA 1335626 230 230 100% 1e-66 59.49 7077 AVN89418.1 ORF1ab [Middle East respiratory syndrome-related coronavirus] Middle East ... NA 1335626 230 230 100% 1e-66 59.49 7077 AVN89374.1 Alignments: >nsp1 [Pipistrellus bat coronavirus HKU5] Sequence ID: YP_009944339.1 Length: 195 >nsp1 [Pipistrellus bat coronavirus HKU5] Sequence ID: YP_009944354.1 Length: 195 Range 1: 1 to 195 Score:403 bits(1036), Expect:7e-143, Method:Compositional matrix adjust., Identities:195/195(100%), Positives:195/195(100%), Gaps:0/195(0%) Query 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS 60 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS Sbjct 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS 60 Query 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG Sbjct 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 Query 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADP 180 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADP Sbjct 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADP 180 Query 181 CGKYSQSLLKKLVGG 195 CGKYSQSLLKKLVGG Sbjct 181 CGKYSQSLLKKLVGG 195 >ORF1a [Pipistrellus bat coronavirus HKU5] Sequence ID: AWH65909.1 Length: 4482 Range 1: 1 to 195 Score:414 bits(1064), Expect:5e-131, Method:Compositional matrix adjust., Identities:195/195(100%), Positives:195/195(100%), Gaps:0/195(0%) Query 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS 60 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS Sbjct 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS 60 Query 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG Sbjct 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 Query 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADP 180 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADP Sbjct 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADP 180 Query 181 CGKYSQSLLKKLVGG 195 CGKYSQSLLKKLVGG Sbjct 181 CGKYSQSLLKKLVGG 195 >ORF1a polyprotein [Pipistrellus bat coronavirus HKU5] Sequence ID: YP_009944337.1 Length: 4481 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like protease nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL2-PRO; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Pipistrellus bat coronavirus HKU5] Sequence ID: P0C6T5.1 Length: 4481 Range 1: 1 to 195 Score:414 bits(1064), Expect:5e-131, Method:Compositional matrix adjust., Identities:195/195(100%), Positives:195/195(100%), Gaps:0/195(0%) Query 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS 60 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS Sbjct 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS 60 Query 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG Sbjct 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 Query 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADP 180 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADP Sbjct 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADP 180 Query 181 CGKYSQSLLKKLVGG 195 CGKYSQSLLKKLVGG Sbjct 181 CGKYSQSLLKKLVGG 195 >ORF1ab [Pipistrellus bat coronavirus HKU5] Sequence ID: AWH65908.1 Length: 7183 Range 1: 1 to 195 Score:413 bits(1062), Expect:1e-130, Method:Compositional matrix adjust., Identities:195/195(100%), Positives:195/195(100%), Gaps:0/195(0%) Query 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS 60 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS Sbjct 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS 60 Query 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG Sbjct 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 Query 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADP 180 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADP Sbjct 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADP 180 Query 181 CGKYSQSLLKKLVGG 195 CGKYSQSLLKKLVGG Sbjct 181 CGKYSQSLLKKLVGG 195 >orf1ab polyprotein [Pipistrellus abramus bat coronavirus HKU5-related] Sequence ID: QHA24686.1 Length: 7179 Range 1: 1 to 195 Score:413 bits(1061), Expect:1e-130, Method:Compositional matrix adjust., Identities:195/195(100%), Positives:195/195(100%), Gaps:0/195(0%) Query 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS 60 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS Sbjct 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS 60 Query 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG Sbjct 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 Query 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADP 180 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADP Sbjct 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADP 180 Query 181 CGKYSQSLLKKLVGG 195 CGKYSQSLLKKLVGG Sbjct 181 CGKYSQSLLKKLVGG 195 >ORF1ab polyprotein [Pipistrellus bat coronavirus HKU5] Sequence ID: YP_001039961.1 Length: 7182 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=nsp16 [Pipistrellus bat coronavirus HKU5] Sequence ID: P0C6W4.1 Length: 7182 >orf1ab polyprotein [Pipistrellus bat coronavirus HKU5] Sequence ID: ABN10874.1 Length: 7182 Range 1: 1 to 195 Score:413 bits(1061), Expect:1e-130, Method:Compositional matrix adjust., Identities:195/195(100%), Positives:195/195(100%), Gaps:0/195(0%) Query 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS 60 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS Sbjct 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS 60 Query 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG Sbjct 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 Query 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADP 180 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADP Sbjct 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADP 180 Query 181 CGKYSQSLLKKLVGG 195 CGKYSQSLLKKLVGG Sbjct 181 CGKYSQSLLKKLVGG 195 >orf1ab polyprotein [Bat coronavirus HKU5-2] Sequence ID: ABN10883.1 Length: 7179 Range 1: 1 to 195 Score:413 bits(1061), Expect:1e-130, Method:Compositional matrix adjust., Identities:195/195(100%), Positives:195/195(100%), Gaps:0/195(0%) Query 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS 60 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS Sbjct 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS 60 Query 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG Sbjct 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 Query 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADP 180 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADP Sbjct 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADP 180 Query 181 CGKYSQSLLKKLVGG 195 CGKYSQSLLKKLVGG Sbjct 181 CGKYSQSLLKKLVGG 195 >orf1ab polyprotein [Bat coronavirus HKU5-3] Sequence ID: ABN10892.1 Length: 7179 Range 1: 1 to 195 Score:413 bits(1061), Expect:1e-130, Method:Compositional matrix adjust., Identities:195/195(100%), Positives:195/195(100%), Gaps:0/195(0%) Query 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS 60 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS Sbjct 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS 60 Query 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG Sbjct 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 Query 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADP 180 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADP Sbjct 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADP 180 Query 181 CGKYSQSLLKKLVGG 195 CGKYSQSLLKKLVGG Sbjct 181 CGKYSQSLLKKLVGG 195 >orf1ab polyprotein [Bat coronavirus HKU5-5] Sequence ID: ABN10901.1 Length: 7179 Range 1: 1 to 195 Score:413 bits(1061), Expect:1e-130, Method:Compositional matrix adjust., Identities:195/195(100%), Positives:195/195(100%), Gaps:0/195(0%) Query 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS 60 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS Sbjct 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS 60 Query 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG Sbjct 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 Query 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADP 180 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADP Sbjct 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADP 180 Query 181 CGKYSQSLLKKLVGG 195 CGKYSQSLLKKLVGG Sbjct 181 CGKYSQSLLKKLVGG 195 >ORF1a [Pipistrellus bat coronavirus HKU5] Sequence ID: AWH65920.1 Length: 4481 Range 1: 1 to 195 Score:411 bits(1057), Expect:4e-130, Method:Compositional matrix adjust., Identities:194/195(99%), Positives:194/195(99%), Gaps:0/195(0%) Query 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS 60 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKA LCDAGDLVLKISPWFMDGESAYKHVS Sbjct 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKAPLCDAGDLVLKISPWFMDGESAYKHVS 60 Query 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG Sbjct 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 Query 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADP 180 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADP Sbjct 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADP 180 Query 181 CGKYSQSLLKKLVGG 195 CGKYSQSLLKKLVGG Sbjct 181 CGKYSQSLLKKLVGG 195 >ORF1ab polyprotein [BtPa-BetaCoV/GD2013] Sequence ID: AIA62342.1 Length: 7182 Range 1: 1 to 195 Score:411 bits(1056), Expect:7e-130, Method:Compositional matrix adjust., Identities:194/195(99%), Positives:194/195(99%), Gaps:0/195(0%) Query 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS 60 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKA LCDAGDLVLKISPWFMDGESAYKHVS Sbjct 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKAPLCDAGDLVLKISPWFMDGESAYKHVS 60 Query 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG Sbjct 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 Query 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADP 180 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADP Sbjct 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADP 180 Query 181 CGKYSQSLLKKLVGG 195 CGKYSQSLLKKLVGG Sbjct 181 CGKYSQSLLKKLVGG 195 >ORF1ab [Pipistrellus bat coronavirus HKU5] Sequence ID: AWH65919.1 Length: 7182 Range 1: 1 to 195 Score:410 bits(1055), Expect:8e-130, Method:Compositional matrix adjust., Identities:194/195(99%), Positives:194/195(99%), Gaps:0/195(0%) Query 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS 60 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKA LCDAGDLVLKISPWFMDGESAYKHVS Sbjct 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKAPLCDAGDLVLKISPWFMDGESAYKHVS 60 Query 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG Sbjct 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 Query 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADP 180 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADP Sbjct 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADP 180 Query 181 CGKYSQSLLKKLVGG 195 CGKYSQSLLKKLVGG Sbjct 181 CGKYSQSLLKKLVGG 195 >ORF1a [Pipistrellus bat coronavirus HKU5] Sequence ID: AWH65931.1 Length: 4500 Range 1: 1 to 195 Score:408 bits(1049), Expect:6e-129, Method:Compositional matrix adjust., Identities:192/195(98%), Positives:192/195(98%), Gaps:0/195(0%) Query 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS 60 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLV KISPWFMDGE AYKHVS Sbjct 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVFKISPWFMDGEGAYKHVS 60 Query 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG Sbjct 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 Query 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADP 180 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKG GGNRFRDAPWDYNWTPYSDLMDALEADP Sbjct 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGLGGNRFRDAPWDYNWTPYSDLMDALEADP 180 Query 181 CGKYSQSLLKKLVGG 195 CGKYSQSLLKKLVGG Sbjct 181 CGKYSQSLLKKLVGG 195 >ORF1ab [Pipistrellus bat coronavirus HKU5] Sequence ID: AWH65930.1 Length: 7198 Range 1: 1 to 195 Score:407 bits(1047), Expect:1e-128, Method:Compositional matrix adjust., Identities:192/195(98%), Positives:192/195(98%), Gaps:0/195(0%) Query 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS 60 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLV KISPWFMDGE AYKHVS Sbjct 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVFKISPWFMDGEGAYKHVS 60 Query 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG Sbjct 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 Query 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADP 180 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKG GGNRFRDAPWDYNWTPYSDLMDALEADP Sbjct 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGLGGNRFRDAPWDYNWTPYSDLMDALEADP 180 Query 181 CGKYSQSLLKKLVGG 195 CGKYSQSLLKKLVGG Sbjct 181 CGKYSQSLLKKLVGG 195 >orf1ab polyprotein [Wenzhou Pipistrellus abramus betacoronavirus 1] Sequence ID: UBB42430.1 Length: 7179 Range 1: 1 to 195 Score:405 bits(1040), Expect:1e-127, Method:Compositional matrix adjust., Identities:191/195(98%), Positives:192/195(98%), Gaps:0/195(0%) Query 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS 60 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS Sbjct 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS 60 Query 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 EQLSKGSKLLFVP TLKGFIRHLPGPRVYLVERLTGGTYSDPFMV QLAYQNAAGEGVIG Sbjct 61 EQLSKGSKLLFVPYTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVQQLAYQNAAGEGVIG 120 Query 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADP 180 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKG GGNRFRDAPWDYNWTPYSDLMD+LEADP Sbjct 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGLGGNRFRDAPWDYNWTPYSDLMDSLEADP 180 Query 181 CGKYSQSLLKKLVGG 195 CGKYSQSLLKKLVGG Sbjct 181 CGKYSQSLLKKLVGG 195 >orf1a polyprotein [Betacoronavirus sp.] Sequence ID: WDE20338.1 Length: 4449 Range 1: 1 to 195 Score:295 bits(755), Expect:2e-89, Method:Compositional matrix adjust., Identities:140/195(72%), Positives:158/195(81%), Gaps:0/195(0%) Query 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS 60 MSFVAGV QGAR YRA LNTEKR DHVS LC +GDLVLK+SPWF DGE+A V Sbjct 1 MSFVAGVTAQGARSIYRAALNTEKRGDHVSRTVPLCGSGDLVLKLSPWFADGETACNTVK 60 Query 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 + LSK K+LFVP L GF++HLPGPRVYLVERLTGGTYSDPFMVNQLAY ++AG+ ++G Sbjct 61 DILSKEGKILFVPVALGGFLKHLPGPRVYLVERLTGGTYSDPFMVNQLAYSSSAGDSLVG 120 Query 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADP 180 TTLQGK VG FFP+D+ L TG FLLRK G GGNRFRD PWDYNWTPYS+ MD LEADP Sbjct 121 TTLQGKPVGFFFPYDSALETGTHTFLLRKYGRGGNRFRDMPWDYNWTPYSEFMDDLEADP 180 Query 181 CGKYSQSLLKKLVGG 195 GKYS++LLKKL+GG Sbjct 181 KGKYSKNLLKKLLGG 195 >ORF1A polyprotein [Middle East respiratory syndrome-related coronavirus] Sequence ID: USL83010.1 Length: 4449 Range 1: 1 to 195 Score:295 bits(755), Expect:2e-89, Method:Compositional matrix adjust., Identities:140/195(72%), Positives:158/195(81%), Gaps:0/195(0%) Query 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS 60 MSFVAGV QGAR YRA LNTEKR DHVS LC +GDLVLK+SPWF DGE+A V Sbjct 1 MSFVAGVTAQGARSIYRAALNTEKRGDHVSRTVPLCGSGDLVLKLSPWFADGETACNTVK 60 Query 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 + LSK K+LFVP L GF++HLPGPRVYLVERLTGGTYSDPFMVNQLAY ++AG+ ++G Sbjct 61 DILSKEGKILFVPVALGGFLKHLPGPRVYLVERLTGGTYSDPFMVNQLAYSSSAGDSLVG 120 Query 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADP 180 TTLQGK VG FFP+D+ L TG FLLRK G GGNRFRD PWDYNWTPYS+ MD LEADP Sbjct 121 TTLQGKPVGFFFPYDSALETGTHTFLLRKYGRGGNRFRDMPWDYNWTPYSEFMDDLEADP 180 Query 181 CGKYSQSLLKKLVGG 195 GKYS++LLKKL+GG Sbjct 181 KGKYSKNLLKKLLGG 195 >orf1a polyprotein [Betacoronavirus sp.] Sequence ID: WDE20355.1 Length: 4455 Range 1: 10 to 204 Score:295 bits(755), Expect:2e-89, Method:Compositional matrix adjust., Identities:140/195(72%), Positives:158/195(81%), Gaps:0/195(0%) Query 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS 60 MSFVAGV QGAR YRA LNTEKR DHVS LC +GDLVLK+SPWF DGE+A V Sbjct 10 MSFVAGVTAQGARSIYRAALNTEKRGDHVSRTVPLCGSGDLVLKLSPWFADGETACNTVK 69 Query 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 + LSK K+LFVP L GF++HLPGPRVYLVERLTGGTYSDPFMVNQLAY ++AG+ ++G Sbjct 70 DILSKEGKILFVPVALGGFLKHLPGPRVYLVERLTGGTYSDPFMVNQLAYSSSAGDSLVG 129 Query 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADP 180 TTLQGK VG FFP+D+ L TG FLLRK G GGNRFRD PWDYNWTPYS+ MD LEADP Sbjct 130 TTLQGKPVGFFFPYDSALETGTHTFLLRKYGRGGNRFRDMPWDYNWTPYSEFMDDLEADP 189 Query 181 CGKYSQSLLKKLVGG 195 GKYS++LLKKL+GG Sbjct 190 KGKYSKNLLKKLLGG 204 >ORF1AB polyprotein [Middle East respiratory syndrome-related coronavirus] Sequence ID: USL83009.1 Length: 7137 Range 1: 1 to 195 Score:294 bits(753), Expect:4e-89, Method:Compositional matrix adjust., Identities:140/195(72%), Positives:158/195(81%), Gaps:0/195(0%) Query 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS 60 MSFVAGV QGAR YRA LNTEKR DHVS LC +GDLVLK+SPWF DGE+A V Sbjct 1 MSFVAGVTAQGARSIYRAALNTEKRGDHVSRTVPLCGSGDLVLKLSPWFADGETACNTVK 60 Query 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 + LSK K+LFVP L GF++HLPGPRVYLVERLTGGTYSDPFMVNQLAY ++AG+ ++G Sbjct 61 DILSKEGKILFVPVALGGFLKHLPGPRVYLVERLTGGTYSDPFMVNQLAYSSSAGDSLVG 120 Query 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADP 180 TTLQGK VG FFP+D+ L TG FLLRK G GGNRFRD PWDYNWTPYS+ MD LEADP Sbjct 121 TTLQGKPVGFFFPYDSALETGTHTFLLRKYGRGGNRFRDMPWDYNWTPYSEFMDDLEADP 180 Query 181 CGKYSQSLLKKLVGG 195 GKYS++LLKKL+GG Sbjct 181 KGKYSKNLLKKLLGG 195 >ORF1ab polyprotein [Middle East respiratory syndrome-related coronavirus] Sequence ID: AUM60013.1 Length: 7076 Range 1: 1 to 195 Score:280 bits(715), Expect:5e-84, Method:Compositional matrix adjust., Identities:134/195(69%), Positives:149/195(76%), Gaps:0/195(0%) Query 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS 60 MS VAGVA QGAR YRA LN+EKR DHVS C GDLV K+SPWF DGE+A V Sbjct 1 MSSVAGVATQGARSMYRAALNSEKRPDHVSRTVPCCGTGDLVSKLSPWFADGETACNTVK 60 Query 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 + LSK KLLFVP L GF +HLPGPRVYL ERLTGG YSDPFMVNQLAY ++A EG++G Sbjct 61 DILSKEGKLLFVPLNLSGFTKHLPGPRVYLCERLTGGNYSDPFMVNQLAYSSSASEGLVG 120 Query 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADP 180 TTLQGK +G FFP++ L TG F F +RK G GGN FRD PWDY WTPY +LM+ LEADP Sbjct 121 TTLQGKAIGFFFPYEEGLETGTFTFKIRKNGRGGNLFRDRPWDYTWTPYPELMEDLEADP 180 Query 181 CGKYSQSLLKKLVGG 195 GKYSQSLLKKLVGG Sbjct 181 KGKYSQSLLKKLVGG 195 >ORF1ab polyprotein [Middle East respiratory syndrome-related coronavirus] Sequence ID: AUM60023.1 Length: 7076 Range 1: 1 to 195 Score:276 bits(707), Expect:6e-83, Method:Compositional matrix adjust., Identities:133/195(68%), Positives:148/195(75%), Gaps:0/195(0%) Query 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS 60 MS VAGVA QGAR YRA LN+EKR DHVS C G LV K+SPWF DGE+A V Sbjct 1 MSSVAGVATQGARSMYRAALNSEKRPDHVSRTVPCCGTGALVSKLSPWFADGETACNTVK 60 Query 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 + LSK KLLFVP L GF +HLPGPRVYL ERLTGG YSDPFMVNQLAY ++A EG++G Sbjct 61 DILSKEGKLLFVPLNLSGFTKHLPGPRVYLCERLTGGNYSDPFMVNQLAYSSSASEGLVG 120 Query 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADP 180 TTLQGK +G FFP++ L TG F F +RK G GGN FRD PWDY WTPY +LM+ LEADP Sbjct 121 TTLQGKAIGFFFPYEEGLETGTFTFKIRKNGRGGNLFRDRPWDYTWTPYPELMEDLEADP 180 Query 181 CGKYSQSLLKKLVGG 195 GKYSQSLLKKLVGG Sbjct 181 KGKYSQSLLKKLVGG 195 >nsp1 [Tylonycteris bat coronavirus HKU4] Sequence ID: YP_009944310.1 Length: 195 >nsp1 [Tylonycteris bat coronavirus HKU4] Sequence ID: YP_009944325.1 Length: 195 Range 1: 5 to 195 Score:238 bits(607), Expect:2e-77, Method:Compositional matrix adjust., Identities:111/191(58%), Positives:139/191(72%), Gaps:0/191(0%) Query 5 AGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVSEQLS 64 A V QGARGKYRAEL EKR+DHV+ LCD D+ K++PWF DGE+A+ VS L Sbjct 5 ASVTTQGARGKYRAELYNEKRSDHVACTVPLCDTDDMACKLTPWFEDGETAFNQVSSILK 64 Query 65 KGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIGTTLQ 124 + K+LFVP ++ ++ LPGPRVYLVERLTGG S F+VNQLAY++ G ++ TTL Sbjct 65 EKGKILFVPMHMQRAMKFLPGPRVYLVERLTGGMLSKHFLVNQLAYKDQVGAAMMRTTLN 124 Query 125 GKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADPCGKY 184 K +GMFFP+D+ L TGE+ FLLRK G GG FR+ PWD TPY +++D LEADP GKY Sbjct 125 AKPLGMFFPYDSSLETGEYTFLLRKNGLGGQLFRERPWDRKETPYVEILDDLEADPTGKY 184 Query 185 SQSLLKKLVGG 195 SQ+LLKKL+GG Sbjct 185 SQNLLKKLIGG 195 >nsp1 protein [Middle East respiratory syndrome-related coronavirus] Sequence ID: YP_009047213.1 Length: 193 >nsp1 protein [Middle East respiratory syndrome-related coronavirus] Sequence ID: YP_009047229.1 Length: 193 >nsp1 [Betacoronavirus England 1] Sequence ID: YP_009944281.1 Length: 193 >nsp1 [Betacoronavirus England 1] Sequence ID: YP_009944292.1 Length: 193 Range 1: 1 to 193 Score:226 bits(576), Expect:7e-73, Method:Compositional matrix adjust., Identities:115/195(59%), Positives:139/195(71%), Gaps:2/195(1%) Query 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS 60 MSFVAGV QGARG YRA LN+EK DHVSL LC +G+LV K+SPWFMDGE+AY+ V Sbjct 1 MSFVAGVTAQGARGTYRAALNSEKHQDHVSLTVPLCGSGNLVEKLSPWFMDGENAYEVVK 60 Query 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 L K LL+VP L G RHLPGPRVYLVERL +PFMVNQLAY ++A ++G Sbjct 61 AMLLKKEPLLYVPIRLAGHTRHLPGPRVYLVERLIAC--ENPFMVNQLAYSSSANGSLVG 118 Query 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADP 180 TTLQGK +GMFFP+D +LVTG+ LLRK G GG + ++ + T + MD EADP Sbjct 119 TTLQGKPIGMFFPYDIELVTGKQNILLRKYGRGGYHYTPFHYERDNTSCPEWMDDFEADP 178 Query 181 CGKYSQSLLKKLVGG 195 GKY+Q+LLKKL+GG Sbjct 179 KGKYAQNLLKKLIGG 193 >ORF1a polyprotein [Bat coronavirus] Sequence ID: YP_009361855.1 Length: 4388 >ORF1a protein [Bat coronavirus] Sequence ID: ARJ34224.1 Length: 4388 Range 1: 1 to 195 Score:247 bits(631), Expect:9e-73, Method:Compositional matrix adjust., Identities:121/195(62%), Positives:144/195(73%), Gaps:0/195(0%) Query 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS 60 MSFVA V QGARG YRA LN+EK DHVSL LC +GDLV K+SPWFMDG A + V Sbjct 1 MSFVADVTAQGARGTYRAALNSEKHHDHVSLTVPLCGSGDLVSKLSPWFMDGYDACEAVK 60 Query 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 LS KLLFVP L G+ +HLPGPRVYLVERL G Y+DPFMVNQ+AY ++A G++G Sbjct 61 VMLSNKEKLLFVPIRLVGYTKHLPGPRVYLVERLINGIYTDPFMVNQVAYSSSANAGLVG 120 Query 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADP 180 TTLQGK +G+FFPFDADLVTG+ FLLRK G GG + ++ + T + MD LEADP Sbjct 121 TTLQGKPIGLFFPFDADLVTGDHTFLLRKYGRGGYHYTPFHYERDATSRPEWMDDLEADP 180 Query 181 CGKYSQSLLKKLVGG 195 GKY+Q+LLKKL+GG Sbjct 181 KGKYAQNLLKKLIGG 195 >ORF1a [Middle East respiratory syndrome-related coronavirus] Sequence ID: USF97408.1 Length: 4437 Range 1: 1 to 195 Score:247 bits(631), Expect:1e-72, Method:Compositional matrix adjust., Identities:122/196(62%), Positives:145/196(73%), Gaps:2/196(1%) Query 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS 60 MS VAGV QGAR YRA LN EKR DHVSL C AGDL +K+SPWF DGE+A V Sbjct 1 MSSVAGVVAQGARDTYRAALNNEKRQDHVSLTVPFCGAGDLAMKLSPWFADGETACNTVR 60 Query 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 E L K+LFVP L F++HLPGPRVYLVERLTGG +SDPFMVNQ+AY ++A + ++G Sbjct 61 ETLINKGKVLFVPVKLASFLKHLPGPRVYLVERLTGGNFSDPFMVNQVAYSSSASDAIVG 120 Query 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDA-PWDYNWTPYSDLMDALEAD 179 TTLQGK VG FFP+D+ L TG++ FLLRK G GGNRFR + P TPY +L D LEAD Sbjct 121 TTLQGKPVGYFFPYDSALETGDYTFLLRKNGRGGNRFRHSLPQPDRDTPY-ELFDDLEAD 179 Query 180 PCGKYSQSLLKKLVGG 195 P GKYS+ ++KKL+GG Sbjct 180 PKGKYSKGVIKKLIGG 195 >ORF1ab polyprotein [Bat coronavirus] Sequence ID: YP_009361856.2 Length: 7076 Range 1: 1 to 195 Score:247 bits(631), Expect:1e-72, Method:Compositional matrix adjust., Identities:121/195(62%), Positives:144/195(73%), Gaps:0/195(0%) Query 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS 60 MSFVA V QGARG YRA LN+EK DHVSL LC +GDLV K+SPWFMDG A + V Sbjct 1 MSFVADVTAQGARGTYRAALNSEKHHDHVSLTVPLCGSGDLVSKLSPWFMDGYDACEAVK 60 Query 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 LS KLLFVP L G+ +HLPGPRVYLVERL G Y+DPFMVNQ+AY ++A G++G Sbjct 61 VMLSNKEKLLFVPIRLVGYTKHLPGPRVYLVERLINGIYTDPFMVNQVAYSSSANAGLVG 120 Query 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADP 180 TTLQGK +G+FFPFDADLVTG+ FLLRK G GG + ++ + T + MD LEADP Sbjct 121 TTLQGKPIGLFFPFDADLVTGDHTFLLRKYGRGGYHYTPFHYERDATSRPEWMDDLEADP 180 Query 181 CGKYSQSLLKKLVGG 195 GKY+Q+LLKKL+GG Sbjct 181 KGKYAQNLLKKLIGG 195 >ORF1ab [Middle East respiratory syndrome-related coronavirus] Sequence ID: USF97407.1 Length: 7125 Range 1: 1 to 195 Score:246 bits(629), Expect:2e-72, Method:Compositional matrix adjust., Identities:122/196(62%), Positives:145/196(73%), Gaps:2/196(1%) Query 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS 60 MS VAGV QGAR YRA LN EKR DHVSL C AGDL +K+SPWF DGE+A V Sbjct 1 MSSVAGVVAQGARDTYRAALNNEKRQDHVSLTVPFCGAGDLAMKLSPWFADGETACNTVR 60 Query 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 E L K+LFVP L F++HLPGPRVYLVERLTGG +SDPFMVNQ+AY ++A + ++G Sbjct 61 ETLINKGKVLFVPVKLASFLKHLPGPRVYLVERLTGGNFSDPFMVNQVAYSSSASDAIVG 120 Query 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDA-PWDYNWTPYSDLMDALEAD 179 TTLQGK VG FFP+D+ L TG++ FLLRK G GGNRFR + P TPY +L D LEAD Sbjct 121 TTLQGKPVGYFFPYDSALETGDYTFLLRKNGRGGNRFRHSLPQPDRDTPY-ELFDDLEAD 179 Query 180 PCGKYSQSLLKKLVGG 195 P GKYS+ ++KKL+GG Sbjct 180 PKGKYSKGVIKKLIGG 195 >ORF1a [Middle East respiratory syndrome-related coronavirus] Sequence ID: USF97417.1 Length: 4437 Range 1: 1 to 195 Score:246 bits(627), Expect:4e-72, Method:Compositional matrix adjust., Identities:121/196(62%), Positives:144/196(73%), Gaps:2/196(1%) Query 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS 60 MS AGV QGAR YRA LN EKR DHVSL C AGDL +K+SPWF DGE+A V Sbjct 1 MSSAAGVVAQGARDTYRAALNNEKRQDHVSLTVPFCGAGDLAMKLSPWFADGETACNTVR 60 Query 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 E L K+LFVP L F++HLPGPRVYLVERLTGG +SDPFMVNQ+AY ++A + ++G Sbjct 61 ETLINKGKILFVPVKLASFLKHLPGPRVYLVERLTGGNFSDPFMVNQVAYSSSASDAIVG 120 Query 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDA-PWDYNWTPYSDLMDALEAD 179 TTLQGK VG FFP+D+ L TG++ FLLRK G GGNRFR + P TPY +L D LEAD Sbjct 121 TTLQGKPVGYFFPYDSALETGDYTFLLRKNGRGGNRFRHSLPQPDRDTPY-ELFDDLEAD 179 Query 180 PCGKYSQSLLKKLVGG 195 P GKYS+ ++KKL+GG Sbjct 180 PKGKYSKGVIKKLIGG 195 >ORF1ab [Middle East respiratory syndrome-related coronavirus] Sequence ID: USF97419.1 Length: 7125 Range 1: 1 to 195 Score:245 bits(626), Expect:5e-72, Method:Compositional matrix adjust., Identities:121/196(62%), Positives:144/196(73%), Gaps:2/196(1%) Query 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS 60 MS AGV QGAR YRA LN EKR DHVSL C AGDL +K+SPWF DGE+A V Sbjct 1 MSSAAGVVAQGARDTYRAALNNEKRQDHVSLTVPFCGAGDLAMKLSPWFADGETACNTVR 60 Query 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 E L K+LFVP L F++HLPGPRVYLVERLTGG +SDPFMVNQ+AY ++A + ++G Sbjct 61 ETLINKGKILFVPVKLASFLKHLPGPRVYLVERLTGGNFSDPFMVNQVAYSSSASDAIVG 120 Query 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDA-PWDYNWTPYSDLMDALEAD 179 TTLQGK VG FFP+D+ L TG++ FLLRK G GGNRFR + P TPY +L D LEAD Sbjct 121 TTLQGKPVGYFFPYDSALETGDYTFLLRKNGRGGNRFRHSLPQPDRDTPY-ELFDDLEAD 179 Query 180 PCGKYSQSLLKKLVGG 195 P GKYS+ ++KKL+GG Sbjct 180 PKGKYSKGVIKKLIGG 195 >ORF1a polyprotein [Coronavirus Neoromicia/PML-PHE1/RSA/2011] Sequence ID: AIG13097.1 Length: 4394 Range 1: 1 to 193 Score:243 bits(621), Expect:2e-71, Method:Compositional matrix adjust., Identities:120/195(62%), Positives:143/195(73%), Gaps:2/195(1%) Query 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS 60 MSFVAGV QGARG YRA LN+EK DHVSL LC AGDLV K+SPWFMDG A + V Sbjct 1 MSFVAGVTAQGARGMYRAALNSEKHQDHVSLTVPLCGAGDLVTKLSPWFMDGYEACEAVK 60 Query 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 LS +LLFVP L G+ +HLPGPRVYLVERL DPFMVNQLAY ++A +G++G Sbjct 61 VMLSNNEQLLFVPIHLVGYTKHLPGPRVYLVERLIKCV--DPFMVNQLAYSSSANDGLVG 118 Query 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADP 180 TTLQGK +GMFFP+DA+L TGE LLRK G GG ++ P+ N T +S+ +D LEADP Sbjct 119 TTLQGKPIGMFFPYDAELATGEETILLRKYGRGGYHYKRVPYQRNNTSFSEWIDDLEADP 178 Query 181 CGKYSQSLLKKLVGG 195 GK++Q+LLKKL GG Sbjct 179 KGKFAQNLLKKLTGG 193 >ORF1ab polyprotein [Coronavirus Neoromicia/PML-PHE1/RSA/2011] Sequence ID: AGR87639.3 Length: 7082 Range 1: 1 to 193 Score:243 bits(620), Expect:3e-71, Method:Compositional matrix adjust., Identities:120/195(62%), Positives:143/195(73%), Gaps:2/195(1%) Query 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS 60 MSFVAGV QGARG YRA LN+EK DHVSL LC AGDLV K+SPWFMDG A + V Sbjct 1 MSFVAGVTAQGARGMYRAALNSEKHQDHVSLTVPLCGAGDLVTKLSPWFMDGYEACEAVK 60 Query 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 LS +LLFVP L G+ +HLPGPRVYLVERL DPFMVNQLAY ++A +G++G Sbjct 61 VMLSNNEQLLFVPIHLVGYTKHLPGPRVYLVERLIKCV--DPFMVNQLAYSSSANDGLVG 118 Query 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADP 180 TTLQGK +GMFFP+DA+L TGE LLRK G GG ++ P+ N T +S+ +D LEADP Sbjct 119 TTLQGKPIGMFFPYDAELATGEETILLRKYGRGGYHYKRVPYQRNNTSFSEWIDDLEADP 178 Query 181 CGKYSQSLLKKLVGG 195 GK++Q+LLKKL GG Sbjct 179 KGKFAQNLLKKLTGG 193 >ORF1ab polyprotein [Middle East respiratory syndrome-related coronavirus] Sequence ID: ATQ39389.1 Length: 7085 Range 1: 1 to 193 Score:243 bits(620), Expect:3e-71, Method:Compositional matrix adjust., Identities:120/195(62%), Positives:142/195(72%), Gaps:2/195(1%) Query 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS 60 MSFVAGV QGARG YRA LN+EK DHVSL LC AGDLV K+SPWFMDG A + V Sbjct 1 MSFVAGVTAQGARGMYRAALNSEKHQDHVSLTVPLCGAGDLVTKLSPWFMDGYEACEAVK 60 Query 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 LS +LLFVP L G+ +HLPGPRVYLVERL DPFMVNQLAY ++A +G++G Sbjct 61 VMLSNNEQLLFVPIHLAGYTKHLPGPRVYLVERLIKCV--DPFMVNQLAYSSSANDGLVG 118 Query 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADP 180 TTLQGK +GMFFP+DA+L TGE LLRK G GG ++ P+ N T + + +D LEADP Sbjct 119 TTLQGKPIGMFFPYDAELATGEETILLRKYGRGGYHYKRVPYQRNNTSFPEWIDDLEADP 178 Query 181 CGKYSQSLLKKLVGG 195 GKY+Q+LLKKL GG Sbjct 179 KGKYAQNLLKKLTGG 193 >polyprotein 1a [Hypsugo bat coronavirus HKU25] Sequence ID: ASL68952.1 Length: 4525 Range 1: 1 to 199 Score:241 bits(616), Expect:1e-70, Method:Compositional matrix adjust., Identities:121/200(61%), Positives:143/200(71%), Gaps:6/200(3%) Query 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS 60 MS VAGV QGAR YRA LN EKR DHVSL LC AGDL L+++PWF DGE+A + V Sbjct 1 MSSVAGVVTQGARNMYRAALNNEKRQDHVSLTTPLCGAGDLALRLTPWFADGETACEMVK 60 Query 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 L K+LFVP L GF++H+PGPRVYLVERLTGG YS PFMVNQLAY +A + ++G Sbjct 61 SILKNKEKILFVPAALTGFLKHIPGPRVYLVERLTGGIYSAPFMVNQLAYSPSANDAIVG 120 Query 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDA-----PWDYNWTPYSDLMDA 175 TTLQGK VG FFP+D++L G + FLLRK+G GGN FR + PY +LMD Sbjct 121 TTLQGKPVGFFFPYDSELENGVYTFLLRKEGAGGNYFRTSRSTKPDVSSGNVPY-ELMDD 179 Query 176 LEADPCGKYSQSLLKKLVGG 195 LE DP GKYS+S+LKKLVGG Sbjct 180 LEEDPKGKYSKSVLKKLVGG 199 >ORF1a [Middle East respiratory syndrome-related coronavirus] Sequence ID: AWH65942.1 Length: 4525 Range 1: 1 to 199 Score:241 bits(616), Expect:1e-70, Method:Compositional matrix adjust., Identities:121/200(61%), Positives:143/200(71%), Gaps:6/200(3%) Query 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS 60 MS VAGV QGAR YRA LN EKR DHVSL LC AGDL L+++PWF DGE+A + V Sbjct 1 MSSVAGVVTQGARNMYRAALNNEKRQDHVSLTTPLCGAGDLALRLTPWFADGETACEMVK 60 Query 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 L K+LFVP L GF++H+PGPRVYLVERLTGG YS PFMVNQLAY +A + ++G Sbjct 61 SILKNKEKILFVPAALTGFLKHIPGPRVYLVERLTGGIYSAPFMVNQLAYSPSANDAIVG 120 Query 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDA-----PWDYNWTPYSDLMDA 175 TTLQGK VG FFP+D++L G + FLLRK+G GGN FR + PY +LMD Sbjct 121 TTLQGKPVGFFFPYDSELENGVYTFLLRKEGAGGNYFRTSRSTKPDVSSGNVPY-ELMDD 179 Query 176 LEADPCGKYSQSLLKKLVGG 195 LE DP GKYS+S+LKKLVGG Sbjct 180 LEEDPKGKYSKSVLKKLVGG 199 >replicase polyprotein 1ab [Hypsugo bat coronavirus HKU25] Sequence ID: ASL68951.1 Length: 7212 Range 1: 1 to 199 Score:241 bits(614), Expect:2e-70, Method:Compositional matrix adjust., Identities:121/200(61%), Positives:143/200(71%), Gaps:6/200(3%) Query 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS 60 MS VAGV QGAR YRA LN EKR DHVSL LC AGDL L+++PWF DGE+A + V Sbjct 1 MSSVAGVVTQGARNMYRAALNNEKRQDHVSLTTPLCGAGDLALRLTPWFADGETACEMVK 60 Query 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 L K+LFVP L GF++H+PGPRVYLVERLTGG YS PFMVNQLAY +A + ++G Sbjct 61 SILKNKEKILFVPAALTGFLKHIPGPRVYLVERLTGGIYSAPFMVNQLAYSPSANDAIVG 120 Query 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDA-----PWDYNWTPYSDLMDA 175 TTLQGK VG FFP+D++L G + FLLRK+G GGN FR + PY +LMD Sbjct 121 TTLQGKPVGFFFPYDSELENGVYTFLLRKEGAGGNYFRTSRSTKPDVSSGNVPY-ELMDD 179 Query 176 LEADPCGKYSQSLLKKLVGG 195 LE DP GKYS+S+LKKLVGG Sbjct 180 LEEDPKGKYSKSVLKKLVGG 199 >ORF1ab [Middle East respiratory syndrome-related coronavirus] Sequence ID: AWH65941.1 Length: 7212 Range 1: 1 to 199 Score:241 bits(614), Expect:2e-70, Method:Compositional matrix adjust., Identities:121/200(61%), Positives:143/200(71%), Gaps:6/200(3%) Query 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS 60 MS VAGV QGAR YRA LN EKR DHVSL LC AGDL L+++PWF DGE+A + V Sbjct 1 MSSVAGVVTQGARNMYRAALNNEKRQDHVSLTTPLCGAGDLALRLTPWFADGETACEMVK 60 Query 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 L K+LFVP L GF++H+PGPRVYLVERLTGG YS PFMVNQLAY +A + ++G Sbjct 61 SILKNKEKILFVPAALTGFLKHIPGPRVYLVERLTGGIYSAPFMVNQLAYSPSANDAIVG 120 Query 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDA-----PWDYNWTPYSDLMDA 175 TTLQGK VG FFP+D++L G + FLLRK+G GGN FR + PY +LMD Sbjct 121 TTLQGKPVGFFFPYDSELENGVYTFLLRKEGAGGNYFRTSRSTKPDVSSGNVPY-ELMDD 179 Query 176 LEADPCGKYSQSLLKKLVGG 195 LE DP GKYS+S+LKKLVGG Sbjct 180 LEEDPKGKYSKSVLKKLVGG 199 >ORF1ab [Merbecovirus sp.] Sequence ID: BDD37131.1 Length: 7107 >ORF1ab polyprotein [Merbecovirus sp.] Sequence ID: BDI08836.1 Length: 7107 Range 1: 1 to 197 Score:241 bits(614), Expect:2e-70, Method:Compositional matrix adjust., Identities:122/199(61%), Positives:143/199(71%), Gaps:6/199(3%) Query 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS 60 MS VAGV QGAR YRA LN EKR DHVSL LC GD +K+SPWF DG++A V Sbjct 1 MSSVAGVVAQGARNMYRAALNNEKRQDHVSLTVPLCGTGDQAMKLSPWFADGQTACDTVR 60 Query 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 L K+LFVP L GF++HLPGPRVYLVERLTGGTYS+PFMVNQLAY +A + ++G Sbjct 61 VTLKNKEKILFVPFNLIGFVKHLPGPRVYLVERLTGGTYSEPFMVNQLAYSPSASDAIVG 120 Query 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPW----DYNWTPYSDLMDAL 176 TTLQGK VG FFP+++ L TGEF FLLRK+G GGN FR P D + PY ++ DAL Sbjct 121 TTLQGKPVGFFFPYESSLETGEFTFLLRKEGRGGNHFR-CPLVEEDDIVYFPY-EVSDAL 178 Query 177 EADPCGKYSQSLLKKLVGG 195 + DP GKYS+ LL KLVGG Sbjct 179 QDDPKGKYSKKLLNKLVGG 197 >ORF1a polyprotein [Tylonycteris bat coronavirus HKU4] Sequence ID: YP_009944308.1 Length: 4434 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL2-PRO; AltName: Full=Papain-like proteinase; Short=PL-PRO; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Tylonycteris bat coronavirus HKU4] Sequence ID: P0C6T4.1 Length: 4434 Range 1: 5 to 195 Score:241 bits(614), Expect:2e-70, Method:Compositional matrix adjust., Identities:111/191(58%), Positives:139/191(72%), Gaps:0/191(0%) Query 5 AGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVSEQLS 64 A V QGARGKYRAEL EKR+DHV+ LCD D+ K++PWF DGE+A+ VS L Sbjct 5 ASVTTQGARGKYRAELYNEKRSDHVACTVPLCDTDDMACKLTPWFEDGETAFNQVSSILK 64 Query 65 KGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIGTTLQ 124 + K+LFVP ++ ++ LPGPRVYLVERLTGG S F+VNQLAY++ G ++ TTL Sbjct 65 EKGKILFVPMHMQRAMKFLPGPRVYLVERLTGGMLSKHFLVNQLAYKDQVGAAMMRTTLN 124 Query 125 GKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADPCGKY 184 K +GMFFP+D+ L TGE+ FLLRK G GG FR+ PWD TPY +++D LEADP GKY Sbjct 125 AKPLGMFFPYDSSLETGEYTFLLRKNGLGGQLFRERPWDRKETPYVEILDDLEADPTGKY 184 Query 185 SQSLLKKLVGG 195 SQ+LLKKL+GG Sbjct 185 SQNLLKKLIGG 195 >ORF1a [Tylonycteris bat coronavirus HKU4] Sequence ID: AWH65898.1 Length: 4444 Range 1: 5 to 195 Score:240 bits(613), Expect:2e-70, Method:Compositional matrix adjust., Identities:111/191(58%), Positives:139/191(72%), Gaps:0/191(0%) Query 5 AGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVSEQLS 64 A V QGARGKYRAEL EKR+DHV+ LCD D+ K++PWF DGE+A+ VS L Sbjct 5 ASVTTQGARGKYRAELYNEKRSDHVACTVPLCDTDDMACKLTPWFEDGETAFNQVSSILK 64 Query 65 KGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIGTTLQ 124 + K+LFVP ++ ++ LPGPRVYLVERLTGG S F+VNQLAY++ G ++ TTL Sbjct 65 EKGKILFVPMHMQRAMKFLPGPRVYLVERLTGGMLSKHFLVNQLAYKDHVGAALMRTTLN 124 Query 125 GKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADPCGKY 184 K +GMFFP+D+ L TGE+ FLLRK G GG FR+ PWD TPY +++D LEADP GKY Sbjct 125 AKPLGMFFPYDSSLETGEYTFLLRKNGLGGQLFRERPWDRKETPYVEILDDLEADPTGKY 184 Query 185 SQSLLKKLVGG 195 SQ+LLKKL+GG Sbjct 185 SQNLLKKLIGG 195 >ORF1ab [Tylonycteris bat coronavirus HKU4] Sequence ID: AWH65897.1 Length: 7129 Range 1: 5 to 195 Score:240 bits(613), Expect:3e-70, Method:Compositional matrix adjust., Identities:111/191(58%), Positives:139/191(72%), Gaps:0/191(0%) Query 5 AGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVSEQLS 64 A V QGARGKYRAEL EKR+DHV+ LCD D+ K++PWF DGE+A+ VS L Sbjct 5 ASVTTQGARGKYRAELYNEKRSDHVACTVPLCDTDDMACKLTPWFEDGETAFNQVSSILK 64 Query 65 KGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIGTTLQ 124 + K+LFVP ++ ++ LPGPRVYLVERLTGG S F+VNQLAY++ G ++ TTL Sbjct 65 EKGKILFVPMHMQRAMKFLPGPRVYLVERLTGGMLSKHFLVNQLAYKDHVGAALMRTTLN 124 Query 125 GKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADPCGKY 184 K +GMFFP+D+ L TGE+ FLLRK G GG FR+ PWD TPY +++D LEADP GKY Sbjct 125 AKPLGMFFPYDSSLETGEYTFLLRKNGLGGQLFRERPWDRKETPYVEILDDLEADPTGKY 184 Query 185 SQSLLKKLVGG 195 SQ+LLKKL+GG Sbjct 185 SQNLLKKLIGG 195 >orf1ab polyprotein [Bat coronavirus HKU4-2] Sequence ID: ABN10847.1 Length: 7119 >orf1ab polyprotein [Bat coronavirus HKU4-3] Sequence ID: ABN10856.1 Length: 7119 Range 1: 5 to 195 Score:240 bits(612), Expect:3e-70, Method:Compositional matrix adjust., Identities:111/191(58%), Positives:139/191(72%), Gaps:0/191(0%) Query 5 AGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVSEQLS 64 A V QGARGKYRAEL EKR+DHV+ LCD D+ K++PWF DGE+A+ VS L Sbjct 5 ASVTTQGARGKYRAELYNEKRSDHVACTVPLCDTDDMACKLTPWFEDGETAFNQVSSILK 64 Query 65 KGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIGTTLQ 124 + K+LFVP ++ ++ LPGPRVYLVERLTGG S F+VNQLAY++ G ++ TTL Sbjct 65 EKGKILFVPMHMQRAMKFLPGPRVYLVERLTGGMLSKHFLVNQLAYKDQVGAAMMRTTLN 124 Query 125 GKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADPCGKY 184 K +GMFFP+D+ L TGE+ FLLRK G GG FR+ PWD TPY +++D LEADP GKY Sbjct 125 AKPLGMFFPYDSSLETGEYTFLLRKNGLGGQLFRERPWDRKETPYVEILDDLEADPTGKY 184 Query 185 SQSLLKKLVGG 195 SQ+LLKKL+GG Sbjct 185 SQNLLKKLIGG 195 >ORF1ab polyprotein [Tylonycteris bat coronavirus HKU4] Sequence ID: YP_001039952.1 Length: 7119 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=nsp16 [Tylonycteris bat coronavirus HKU4] Sequence ID: P0C6W3.1 Length: 7119 >orf1ab polyprotein [Tylonycteris bat coronavirus HKU4] Sequence ID: ABN10838.1 Length: 7119 Range 1: 5 to 195 Score:240 bits(612), Expect:3e-70, Method:Compositional matrix adjust., Identities:111/191(58%), Positives:139/191(72%), Gaps:0/191(0%) Query 5 AGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVSEQLS 64 A V QGARGKYRAEL EKR+DHV+ LCD D+ K++PWF DGE+A+ VS L Sbjct 5 ASVTTQGARGKYRAELYNEKRSDHVACTVPLCDTDDMACKLTPWFEDGETAFNQVSSILK 64 Query 65 KGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIGTTLQ 124 + K+LFVP ++ ++ LPGPRVYLVERLTGG S F+VNQLAY++ G ++ TTL Sbjct 65 EKGKILFVPMHMQRAMKFLPGPRVYLVERLTGGMLSKHFLVNQLAYKDQVGAAMMRTTLN 124 Query 125 GKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADPCGKY 184 K +GMFFP+D+ L TGE+ FLLRK G GG FR+ PWD TPY +++D LEADP GKY Sbjct 125 AKPLGMFFPYDSSLETGEYTFLLRKNGLGGQLFRERPWDRKETPYVEILDDLEADPTGKY 184 Query 185 SQSLLKKLVGG 195 SQ+LLKKL+GG Sbjct 185 SQNLLKKLIGG 195 >orf1ab polyprotein [Bat coronavirus HKU4-4] Sequence ID: ABN10865.1 Length: 7129 Range 1: 5 to 195 Score:240 bits(612), Expect:4e-70, Method:Compositional matrix adjust., Identities:111/191(58%), Positives:139/191(72%), Gaps:0/191(0%) Query 5 AGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVSEQLS 64 A V QGARGKYRAEL EKR+DHV+ LCD D+ K++PWF DGE+A+ VS L Sbjct 5 ASVTTQGARGKYRAELYNEKRSDHVACTVPLCDTDDMACKLTPWFEDGETAFNQVSSILK 64 Query 65 KGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIGTTLQ 124 + K+LFVP ++ ++ LPGPRVYLVERLTGG S F+VNQLAY++ G ++ TTL Sbjct 65 EKGKILFVPMHMQRAMKFLPGPRVYLVERLTGGMLSKHFLVNQLAYKDHVGAALMRTTLN 124 Query 125 GKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADPCGKY 184 K +GMFFP+D+ L TGE+ FLLRK G GG FR+ PWD TPY +++D LEADP GKY Sbjct 125 AKPLGMFFPYDSSLETGEYTFLLRKNGLGGQLFRERPWDRKETPYVEILDDLEADPTGKY 184 Query 185 SQSLLKKLVGG 195 SQ+LLKKL+GG Sbjct 185 SQNLLKKLIGG 195 >ORF1a [Middle East respiratory syndrome-related coronavirus] Sequence ID: AWH65953.1 Length: 4523 Range 1: 1 to 198 Score:239 bits(611), Expect:4e-70, Method:Compositional matrix adjust., Identities:122/199(61%), Positives:142/199(71%), Gaps:5/199(2%) Query 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS 60 MS VAGV QGAR YRA LN EKR DHVSL LC AGDL L+++PWF DGE+A + V Sbjct 1 MSSVAGVVTQGARNMYRAALNNEKRQDHVSLTTPLCGAGDLALRLTPWFADGETACEMVK 60 Query 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 L K+LFVP L GF++H+PGPRVYLVERLTGG YS PFMVNQLAY +A + ++G Sbjct 61 SILKNKEKILFVPAALTGFLKHIPGPRVYLVERLTGGIYSAPFMVNQLAYSPSASDAIVG 120 Query 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRD----APWDYNWTPYSDLMDAL 176 TTLQGK VG FFP+D +L G + FLLRK+G GGN FR A T Y +LMD L Sbjct 121 TTLQGKPVGFFFPYDPELENGVYTFLLRKEGNGGNYFRSSRPKADISSGNTVY-ELMDDL 179 Query 177 EADPCGKYSQSLLKKLVGG 195 E DP GKYS+S+LKKLVGG Sbjct 180 EDDPKGKYSKSVLKKLVGG 198 >ORF1ab [Middle East respiratory syndrome-related coronavirus] Sequence ID: AWH65952.1 Length: 7210 Range 1: 1 to 198 Score:239 bits(610), Expect:6e-70, Method:Compositional matrix adjust., Identities:122/199(61%), Positives:142/199(71%), Gaps:5/199(2%) Query 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS 60 MS VAGV QGAR YRA LN EKR DHVSL LC AGDL L+++PWF DGE+A + V Sbjct 1 MSSVAGVVTQGARNMYRAALNNEKRQDHVSLTTPLCGAGDLALRLTPWFADGETACEMVK 60 Query 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 L K+LFVP L GF++H+PGPRVYLVERLTGG YS PFMVNQLAY +A + ++G Sbjct 61 SILKNKEKILFVPAALTGFLKHIPGPRVYLVERLTGGIYSAPFMVNQLAYSPSASDAIVG 120 Query 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRD----APWDYNWTPYSDLMDAL 176 TTLQGK VG FFP+D +L G + FLLRK+G GGN FR A T Y +LMD L Sbjct 121 TTLQGKPVGFFFPYDPELENGVYTFLLRKEGNGGNYFRSSRPKADISSGNTVY-ELMDDL 179 Query 177 EADPCGKYSQSLLKKLVGG 195 E DP GKYS+S+LKKLVGG Sbjct 180 EDDPKGKYSKSVLKKLVGG 198 >polyprotein ab [Tylonycteris bat coronavirus HKU4] Sequence ID: QQD78082.1 Length: 7129 Range 1: 5 to 195 Score:239 bits(609), Expect:8e-70, Method:Compositional matrix adjust., Identities:111/191(58%), Positives:138/191(72%), Gaps:0/191(0%) Query 5 AGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVSEQLS 64 A V QGARGKYRAEL EKR+DHV+ LCD D+ K++PWF DGE+A+ VS L Sbjct 5 ASVTTQGARGKYRAELYNEKRSDHVTCTVPLCDTDDMACKLTPWFEDGETAFNQVSSILK 64 Query 65 KGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIGTTLQ 124 + K+LFVP ++ ++ LPGPRVYLVERLTGG S F+VNQLAY++ G ++ TTL Sbjct 65 EKGKILFVPMHMQRAMKFLPGPRVYLVERLTGGMLSKHFLVNQLAYKDHVGAAMMRTTLN 124 Query 125 GKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADPCGKY 184 K +GMFFP+D L TGE+ FLLRK G GG FR+ PWD TPY +++D LEADP GKY Sbjct 125 AKPLGMFFPYDLSLETGEYTFLLRKNGLGGQLFRERPWDRKETPYVEIIDDLEADPTGKY 184 Query 185 SQSLLKKLVGG 195 SQ+LLKKL+GG Sbjct 185 SQNLLKKLIGG 195 >ORF1ab polyprotein [Pangolin coronavirus HKU4/P251T/pangolin/2018] Sequence ID: UJZ92541.1 Length: 7120 Range 1: 5 to 195 Score:239 bits(609), Expect:8e-70, Method:Compositional matrix adjust., Identities:111/191(58%), Positives:139/191(72%), Gaps:0/191(0%) Query 5 AGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVSEQLS 64 A V QGARGKYRAEL EKR+DHV+ LCD D+ K++PWF DGE+A+ VS L Sbjct 5 ASVTTQGARGKYRAELYNEKRSDHVTRTVPLCDTDDMASKLTPWFEDGETAFNLVSSILK 64 Query 65 KGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIGTTLQ 124 + K+LFVP ++ ++HLPGPRVYLVERLTGG S F+VNQLAY+ G ++ TTL Sbjct 65 EKGKILFVPMHMQRAMKHLPGPRVYLVERLTGGMLSQHFLVNQLAYKEHVGATMMRTTLN 124 Query 125 GKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADPCGKY 184 K +GMFFP+D+ LVTGE+ LLRK G GG FRD PW+ PY++++D LEADP GKY Sbjct 125 AKPLGMFFPYDSTLVTGEYTILLRKNGLGGQLFRDRPWERKDAPYAEILDDLEADPTGKY 184 Query 185 SQSLLKKLVGG 195 SQ+LLKKL+GG Sbjct 185 SQNLLKKLIGG 195 >ORF1a polyprotein [Bat coronavirus] Sequence ID: BBJ36007.1 Length: 4492 Range 1: 1 to 195 Score:239 bits(609), Expect:1e-69, Method:Compositional matrix adjust., Identities:120/196(61%), Positives:141/196(71%), Gaps:2/196(1%) Query 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS 60 MS VAGV QGAR YRA LN EKR DHVS S C AGDL +K+SPWF DGE+A V Sbjct 1 MSSVAGVVAQGARDMYRAALNNEKRQDHVSQTVSFCGAGDLAMKLSPWFADGETACNTVK 60 Query 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 L K+LFVP L F++HLPGPRVYLVERLTGG YSDPFMV+QLAY ++A + ++G Sbjct 61 ATLKNKGKILFVPVKLASFVKHLPGPRVYLVERLTGGNYSDPFMVSQLAYSSSARDAIVG 120 Query 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDA-PWDYNWTPYSDLMDALEAD 179 TTLQGK VG FFP+D L TG++ FLLRK GFGGN FR P P+ +L+D LE + Sbjct 121 TTLQGKPVGYFFPYDPALETGDYTFLLRKDGFGGNYFRKPRPNPDEEIPF-ELLDDLEGN 179 Query 180 PCGKYSQSLLKKLVGG 195 P GKY++ LLKKLVGG Sbjct 180 PKGKYAKGLLKKLVGG 195 >polyprotein 1a [Hypsugo bat coronavirus HKU25] Sequence ID: ASL68942.1 Length: 4525 Range 1: 1 to 199 Score:238 bits(608), Expect:1e-69, Method:Compositional matrix adjust., Identities:120/200(60%), Positives:142/200(71%), Gaps:6/200(3%) Query 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS 60 MS VAGV QGAR YRA LN EKR DHVSL LC AGDL L+++PWF DGE+A + V Sbjct 1 MSSVAGVVTQGARIMYRAALNNEKRQDHVSLTTPLCGAGDLALRLTPWFADGETACEMVK 60 Query 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 L K+LFVP L GF++H+PGPRVYLVERLTGG YS PFMVNQLAY +A + ++G Sbjct 61 SILKNKEKILFVPAALTGFLKHIPGPRVYLVERLTGGIYSAPFMVNQLAYSPSASDAIVG 120 Query 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDA-----PWDYNWTPYSDLMDA 175 TTLQGK VG FFP+D +L G + FLLRK+G GGN FR + PY +LMD Sbjct 121 TTLQGKPVGFFFPYDPELENGSYTFLLRKEGAGGNYFRTSRSTKPDVSSGNVPY-ELMDD 179 Query 176 LEADPCGKYSQSLLKKLVGG 195 LE +P GKYS+S+LKKLVGG Sbjct 180 LEENPKGKYSKSVLKKLVGG 199 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like protease nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL2-PRO; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Bat coronavirus (BtCoV/133/2005)] Sequence ID: P0C6F7.1 Length: 4441 Range 1: 5 to 195 Score:238 bits(608), Expect:1e-69, Method:Compositional matrix adjust., Identities:112/191(59%), Positives:139/191(72%), Gaps:0/191(0%) Query 5 AGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVSEQLS 64 AGV QGARGKYRAEL EKR+DHV+ LCD D+ K++PWF DGE+A+ VS L Sbjct 5 AGVTTQGARGKYRAELYNEKRSDHVACTVPLCDTEDMASKLTPWFEDGETAFNQVSSILK 64 Query 65 KGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIGTTLQ 124 + K+LFVP ++ ++ LPGPRVYLVERLTGG S F+VNQLAY++ G ++ TTL Sbjct 65 EKGKILFVPMHMQRAMKFLPGPRVYLVERLTGGMLSKHFLVNQLAYKDHVGAAMMRTTLN 124 Query 125 GKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADPCGKY 184 K +GMFFP+D+ L TGE FLLRK G GG FR+ PWD TPY +++D LEADP GKY Sbjct 125 VKPLGMFFPYDSSLETGEHTFLLRKNGLGGQLFRERPWDRKETPYVEILDDLEADPTGKY 184 Query 185 SQSLLKKLVGG 195 SQ+LLKKL+GG Sbjct 185 SQNLLKKLIGG 195 >ORF1ab polyprotein [Bat coronavirus] Sequence ID: BBJ36006.1 Length: 7179 Range 1: 1 to 195 Score:238 bits(608), Expect:1e-69, Method:Compositional matrix adjust., Identities:120/196(61%), Positives:141/196(71%), Gaps:2/196(1%) Query 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS 60 MS VAGV QGAR YRA LN EKR DHVS S C AGDL +K+SPWF DGE+A V Sbjct 1 MSSVAGVVAQGARDMYRAALNNEKRQDHVSQTVSFCGAGDLAMKLSPWFADGETACNTVK 60 Query 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 L K+LFVP L F++HLPGPRVYLVERLTGG YSDPFMV+QLAY ++A + ++G Sbjct 61 ATLKNKGKILFVPVKLASFVKHLPGPRVYLVERLTGGNYSDPFMVSQLAYSSSARDAIVG 120 Query 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDA-PWDYNWTPYSDLMDALEAD 179 TTLQGK VG FFP+D L TG++ FLLRK GFGGN FR P P+ +L+D LE + Sbjct 121 TTLQGKPVGYFFPYDPALETGDYTFLLRKDGFGGNYFRKPRPNPDEEIPF-ELLDDLEGN 179 Query 180 PCGKYSQSLLKKLVGG 195 P GKY++ LLKKLVGG Sbjct 180 PKGKYAKGLLKKLVGG 195 >ORF1ab polyprotein [BtVs-BetaCoV/SC2013] Sequence ID: AHY61336.1 Length: 7179 Range 1: 1 to 195 Score:238 bits(608), Expect:1e-69, Method:Compositional matrix adjust., Identities:120/196(61%), Positives:141/196(71%), Gaps:2/196(1%) Query 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS 60 MS VAGV QGAR YRA LN EKR DHVS S C AGDL +K+SPWF DGE+A V Sbjct 1 MSSVAGVVAQGARDMYRAALNNEKRQDHVSQTVSFCGAGDLAMKLSPWFADGETACNTVK 60 Query 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 L K+LFVP L F++HLPGPRVYLVERLTGG YSDPFMV+QLAY ++A + ++G Sbjct 61 ATLKNKGKILFVPVKLASFVKHLPGPRVYLVERLTGGNYSDPFMVSQLAYSSSARDAIVG 120 Query 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDA-PWDYNWTPYSDLMDALEAD 179 TTLQGK VG FFP+D L TG++ FLLRK GFGGN FR P P+ +L+D LE + Sbjct 121 TTLQGKPVGYFFPYDPALETGDYTFLLRKDGFGGNYFRKPRPNPDEEIPF-ELLDDLEGN 179 Query 180 PCGKYSQSLLKKLVGG 195 P GKY++ LLKKLVGG Sbjct 180 PKGKYAKGLLKKLVGG 195 >ORF1ab polyprotein [Merbecovirus sp.] Sequence ID: BDI08819.1 Length: 7179 Range 1: 1 to 195 Score:238 bits(608), Expect:1e-69, Method:Compositional matrix adjust., Identities:118/195(61%), Positives:140/195(71%), Gaps:0/195(0%) Query 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS 60 MS VAGV QGAR YRA LN EKR DHVS S C AGDL +K+SPWF DGE+A V Sbjct 1 MSSVAGVVAQGARDMYRAALNNEKRQDHVSQTVSFCGAGDLAMKLSPWFADGETACNTVR 60 Query 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 L K+LFVP L F++HLPGPRVYLVERLTGG YSDPFMV+QLAY ++A + ++G Sbjct 61 ATLKNKGKILFVPVKLASFVKHLPGPRVYLVERLTGGNYSDPFMVSQLAYSSSARDAIVG 120 Query 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADP 180 TTLQGK VG FFP+D L TG++ FLLRK GFGGN FR + + +L+D LE +P Sbjct 121 TTLQGKPVGYFFPYDPALETGDYTFLLRKDGFGGNYFRKPRPNPDEEISFELLDDLEGNP 180 Query 181 CGKYSQSLLKKLVGG 195 GKY++ LLKKLVGG Sbjct 181 KGKYAKGLLKKLVGG 195 >ORF1ab polyprotein [Merbecovirus sp.] Sequence ID: BDI08828.1 Length: 7179 Range 1: 1 to 195 Score:238 bits(607), Expect:2e-69, Method:Compositional matrix adjust., Identities:120/196(61%), Positives:141/196(71%), Gaps:2/196(1%) Query 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS 60 MS VAGV QGAR YRA LN EKR DHVS S C AGDL +K+SPWF DGE+A V Sbjct 1 MSSVAGVVAQGARDMYRAALNNEKRQDHVSQTVSFCGAGDLAMKLSPWFADGETACNTVR 60 Query 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 L K+LFVP L F++HLPGPRVYLVERLTGG YSDPFMV+QLAY ++A + ++G Sbjct 61 ATLKNKGKILFVPVKLASFVKHLPGPRVYLVERLTGGNYSDPFMVSQLAYSSSARDAIVG 120 Query 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDA-PWDYNWTPYSDLMDALEAD 179 TTLQGK VG FFP+D L TG++ FLLRK GFGGN FR P P+ +L+D LE + Sbjct 121 TTLQGKPVGYFFPYDPALETGDYTFLLRKDGFGGNYFRKPRPNPDEEIPF-ELLDDLEGN 179 Query 180 PCGKYSQSLLKKLVGG 195 P GKY++ LLKKLVGG Sbjct 180 PKGKYAKGLLKKLVGG 195 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase nsp14; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=nsp16 [Bat coronavirus (BtCoV/133/2005)] Sequence ID: P0C6W1.1 Length: 7126 >ORF1 [Bat coronavirus (BtCoV/133/2005)] Sequence ID: ABG47051.1 Length: 7126 Range 1: 5 to 195 Score:238 bits(607), Expect:2e-69, Method:Compositional matrix adjust., Identities:112/191(59%), Positives:139/191(72%), Gaps:0/191(0%) Query 5 AGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVSEQLS 64 AGV QGARGKYRAEL EKR+DHV+ LCD D+ K++PWF DGE+A+ VS L Sbjct 5 AGVTTQGARGKYRAELYNEKRSDHVACTVPLCDTEDMASKLTPWFEDGETAFNQVSSILK 64 Query 65 KGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIGTTLQ 124 + K+LFVP ++ ++ LPGPRVYLVERLTGG S F+VNQLAY++ G ++ TTL Sbjct 65 EKGKILFVPMHMQRAMKFLPGPRVYLVERLTGGMLSKHFLVNQLAYKDHVGAAMMRTTLN 124 Query 125 GKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADPCGKY 184 K +GMFFP+D+ L TGE FLLRK G GG FR+ PWD TPY +++D LEADP GKY Sbjct 125 VKPLGMFFPYDSSLETGEHTFLLRKNGLGGQLFRERPWDRKETPYVEILDDLEADPTGKY 184 Query 185 SQSLLKKLVGG 195 SQ+LLKKL+GG Sbjct 185 SQNLLKKLIGG 195 >ORF1a, partial [Middle East respiratory syndrome-related coronavirus] Sequence ID: AHI48797.1 Length: 616 Range 1: 1 to 193 Score:230 bits(586), Expect:2e-69, Method:Compositional matrix adjust., Identities:116/195(59%), Positives:140/195(71%), Gaps:2/195(1%) Query 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS 60 MSFVAGV QGARG YRA LN+EK DHVSL LC +G+LV K+SPWFMDGE+AY+ V Sbjct 1 MSFVAGVIAQGARGTYRAALNSEKHQDHVSLTVPLCGSGNLVEKLSPWFMDGENAYEVVK 60 Query 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 L K LL+VP L G RHLPGPRVYLVERL +PFMVNQLAY ++A ++G Sbjct 61 AMLLKKEPLLYVPIRLAGHTRHLPGPRVYLVERLIAC--ENPFMVNQLAYSSSANGSLVG 118 Query 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADP 180 TTLQGK +GMFFP+D +LVTG+ LLRK G GG + ++ + T Y + MD EADP Sbjct 119 TTLQGKPIGMFFPYDIELVTGKQNILLRKYGRGGYHYTPFHYERDNTSYPEWMDDFEADP 178 Query 181 CGKYSQSLLKKLVGG 195 GKY+Q+LLKKL+GG Sbjct 179 KGKYAQNLLKKLIGG 193 >replicase polyprotein 1ab [Hypsugo bat coronavirus HKU25] Sequence ID: ASL68940.1 Length: 7212 Range 1: 1 to 199 Score:238 bits(606), Expect:2e-69, Method:Compositional matrix adjust., Identities:120/200(60%), Positives:142/200(71%), Gaps:6/200(3%) Query 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS 60 MS VAGV QGAR YRA LN EKR DHVSL LC AGDL L+++PWF DGE+A + V Sbjct 1 MSSVAGVVTQGARIMYRAALNNEKRQDHVSLTTPLCGAGDLALRLTPWFADGETACEMVK 60 Query 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 L K+LFVP L GF++H+PGPRVYLVERLTGG YS PFMVNQLAY +A + ++G Sbjct 61 SILKNKEKILFVPAALTGFLKHIPGPRVYLVERLTGGIYSAPFMVNQLAYSPSASDAIVG 120 Query 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDA-----PWDYNWTPYSDLMDA 175 TTLQGK VG FFP+D +L G + FLLRK+G GGN FR + PY +LMD Sbjct 121 TTLQGKPVGFFFPYDPELENGSYTFLLRKEGAGGNYFRTSRSTKPDVSSGNVPY-ELMDD 179 Query 176 LEADPCGKYSQSLLKKLVGG 195 LE +P GKYS+S+LKKLVGG Sbjct 180 LEENPKGKYSKSVLKKLVGG 199 >ORF1a [Middle East respiratory syndrome-related coronavirus] Sequence ID: AVV62536.1 Length: 4419 Range 1: 1 to 196 Score:237 bits(605), Expect:3e-69, Method:Compositional matrix adjust., Identities:120/197(61%), Positives:140/197(71%), Gaps:3/197(1%) Query 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS 60 MS VAGV QGAR +YRA LN EKR DHVSL C GDL +SPWF DG +A + V Sbjct 1 MSSVAGVVAQGARNRYRAALNNEKRPDHVSLTVPCCGTGDLAEHLSPWFADGATACEMVR 60 Query 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 L K K+LF+P L G+I+HLPGPRVYLVERLTGGTYS PFMVNQLAY ++A + ++G Sbjct 61 AILKKKEKILFLPLNLVGYIKHLPGPRVYLVERLTGGTYSTPFMVNQLAYSSSASDAIVG 120 Query 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRD--APWDYNWTPYSDLMDALEA 178 TTLQGK VG FFP+D L TG+F FLLRK G GGN FR D + PY ++ DAL+ Sbjct 121 TTLQGKPVGFFFPYDPALETGDFTFLLRKNGRGGNHFRHPLEEDDIVYFPY-EVSDALQD 179 Query 179 DPCGKYSQSLLKKLVGG 195 DP GKYS+ LL KLVGG Sbjct 180 DPKGKYSKKLLNKLVGG 196 >ORF1ab [Middle East respiratory syndrome-related coronavirus] Sequence ID: AVV62535.1 Length: 7107 Range 1: 1 to 196 Score:237 bits(604), Expect:4e-69, Method:Compositional matrix adjust., Identities:120/197(61%), Positives:140/197(71%), Gaps:3/197(1%) Query 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS 60 MS VAGV QGAR +YRA LN EKR DHVSL C GDL +SPWF DG +A + V Sbjct 1 MSSVAGVVAQGARNRYRAALNNEKRPDHVSLTVPCCGTGDLAEHLSPWFADGATACEMVR 60 Query 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 L K K+LF+P L G+I+HLPGPRVYLVERLTGGTYS PFMVNQLAY ++A + ++G Sbjct 61 AILKKKEKILFLPLNLVGYIKHLPGPRVYLVERLTGGTYSTPFMVNQLAYSSSASDAIVG 120 Query 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRD--APWDYNWTPYSDLMDALEA 178 TTLQGK VG FFP+D L TG+F FLLRK G GGN FR D + PY ++ DAL+ Sbjct 121 TTLQGKPVGFFFPYDPALETGDFTFLLRKNGRGGNHFRHPLEEDDIVYFPY-EVSDALQD 179 Query 179 DPCGKYSQSLLKKLVGG 195 DP GKYS+ LL KLVGG Sbjct 180 DPKGKYSKKLLNKLVGG 196 >MAG: ORF1a protein [Middle East respiratory syndrome-related coronavirus] Sequence ID: WCZ55711.1 Length: 4426 Range 1: 10 to 205 Score:236 bits(602), Expect:8e-69, Method:Compositional matrix adjust., Identities:120/197(61%), Positives:140/197(71%), Gaps:3/197(1%) Query 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS 60 MS VAGV QGAR +YRA LN EKR DHVSL C GDL +SPWF DG +A + V Sbjct 10 MSSVAGVVAQGARNRYRAALNNEKRPDHVSLTVPCCGTGDLAEHLSPWFADGATACEMVR 69 Query 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 L K K+LF+P L G+I+HLPGPRVYLVERLTGGTYS PFMVNQLAY ++A + ++G Sbjct 70 AILKKKEKILFLPLNLVGYIKHLPGPRVYLVERLTGGTYSTPFMVNQLAYSSSARDAIVG 129 Query 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRD--APWDYNWTPYSDLMDALEA 178 TTLQGK VG FFP+D L TG+F FLLRK G GGN FR D + PY ++ DAL+ Sbjct 130 TTLQGKPVGFFFPYDPALETGDFTFLLRKNGRGGNHFRRPLEEDDIVYFPY-EVSDALQD 188 Query 179 DPCGKYSQSLLKKLVGG 195 DP GKYS+ LL KLVGG Sbjct 189 DPKGKYSKKLLNKLVGG 205 >P1ab protein [Bat coronavirus] Sequence ID: ANA96038.1 Length: 7132 Range 1: 5 to 195 Score:236 bits(601), Expect:9e-69, Method:Compositional matrix adjust., Identities:110/191(58%), Positives:137/191(71%), Gaps:0/191(0%) Query 5 AGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVSEQLS 64 A V QGARGKYRAEL EKR+DHV+ LCD D+ K++PWF DGE+A+ VS L Sbjct 5 ASVTTQGARGKYRAELYNEKRSDHVACTVPLCDTEDMACKLTPWFEDGETAFNQVSSILK 64 Query 65 KGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIGTTLQ 124 + K+LFVP ++ ++ LPGPRVYLVERLTGG S F+VNQLAY++ G ++ TTL Sbjct 65 EKGKILFVPMHMQKAMKFLPGPRVYLVERLTGGMLSKHFLVNQLAYKDHVGAAMMRTTLN 124 Query 125 GKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADPCGKY 184 K +GMFFP+D+ L TGE FLLRK G GG FR+ PWD PY +++D LEADP GKY Sbjct 125 AKPLGMFFPYDSSLETGEHTFLLRKSGLGGQFFRERPWDRKEAPYVEILDDLEADPTGKY 184 Query 185 SQSLLKKLVGG 195 SQ+LLKKL+GG Sbjct 185 SQNLLKKLIGG 195 >ORF1a polyprotein [Tylonycteris robustula coronavirus] Sequence ID: UUT43905.1 Length: 4446 Range 1: 5 to 195 Score:236 bits(601), Expect:1e-68, Method:Compositional matrix adjust., Identities:110/191(58%), Positives:137/191(71%), Gaps:0/191(0%) Query 5 AGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVSEQLS 64 + V QGARGKYRAEL EKR+DHV LCD D+ K++PWF DGE+A+ VS L Sbjct 5 SSVTTQGARGKYRAELYNEKRSDHVVCTVPLCDTDDMASKLTPWFEDGETAFNLVSSILK 64 Query 65 KGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIGTTLQ 124 + K+LFVP ++ ++HLPGPRVYLVERLTGG S F+VNQLAY+ G ++ TTL Sbjct 65 EKGKILFVPMHMQRAMKHLPGPRVYLVERLTGGMLSQHFLVNQLAYKEHVGATMMRTTLN 124 Query 125 GKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADPCGKY 184 K +GMFFP+D LVTGE+ FLLRK G GG FRD W+ PY++++D LEADP GKY Sbjct 125 AKPLGMFFPYDLTLVTGEYTFLLRKNGLGGQLFRDRSWERKDNPYAEILDDLEADPTGKY 184 Query 185 SQSLLKKLVGG 195 SQ+LLKKL+GG Sbjct 185 SQNLLKKLIGG 195 >ORF1ab polyprotein [BtTp-BetaCoV/GX2012] Sequence ID: AIA62351.1 Length: 7127 Range 1: 5 to 195 Score:236 bits(601), Expect:1e-68, Method:Compositional matrix adjust., Identities:109/191(57%), Positives:138/191(72%), Gaps:0/191(0%) Query 5 AGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVSEQLS 64 A V Q ARGKYRAEL EKR+DH++ LCD D+ K++PWF DGE+A+ VS L Sbjct 5 ASVTTQSARGKYRAELYNEKRSDHIACTVPLCDTEDMACKLTPWFEDGETAFNQVSSILK 64 Query 65 KGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIGTTLQ 124 + K+LFVP ++ ++ LPGPRVYLVERLTGG S F+VNQLAY++ G ++ TTL Sbjct 65 EKGKILFVPMHMQMAMKFLPGPRVYLVERLTGGMLSKHFLVNQLAYKDHVGAAMMRTTLN 124 Query 125 GKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADPCGKY 184 K +GMFFP+D+ L TGE+ FLLRK G GG FR+ PW+ TPY +++D LEADP GKY Sbjct 125 AKPLGMFFPYDSSLETGEYTFLLRKNGLGGQLFRERPWNRKETPYVEILDDLEADPTGKY 184 Query 185 SQSLLKKLVGG 195 SQ+LLKKLVGG Sbjct 185 SQNLLKKLVGG 195 >ORF1a [Middle East respiratory syndrome-related coronavirus] Sequence ID: AVV62525.1 Length: 4405 Range 1: 1 to 196 Score:235 bits(600), Expect:1e-68, Method:Compositional matrix adjust., Identities:122/198(62%), Positives:141/198(71%), Gaps:5/198(2%) Query 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS 60 MS VAGV QGAR YRA L EKR DHVSL S C AGD K+SPWFMDG++AY V Sbjct 1 MSSVAGVVAQGARNMYRAALKNEKRQDHVSLTVSCCGAGDQAAKLSPWFMDGQNAYXTVK 60 Query 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 L KLLFVP L GFI HLPGPRV+LVE LTGGTYS PFMVNQ+A+ ++A + ++G Sbjct 61 ATLRNKEKLLFVPFKLTGFINHLPGPRVFLVEWLTGGTYSAPFMVNQIAFSHSANDPLLG 120 Query 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYN---WTPYSDLMDALE 177 TTLQGK VG FFP+D L TGE+ FLLRK G GGN FR P D + + PY ++ DAL+ Sbjct 121 TTLQGKPVGYFFPYDPALETGEYTFLLRKNGRGGNHFRH-PLDEDEIIYFPY-EVFDALQ 178 Query 178 ADPCGKYSQSLLKKLVGG 195 DP GKYS+ LL KLVGG Sbjct 179 DDPKGKYSKKLLNKLVGG 196 >ORF1ab polyprotein [Tylonycteris robustula coronavirus] Sequence ID: UUT43900.1 Length: 7131 Range 1: 5 to 195 Score:235 bits(600), Expect:1e-68, Method:Compositional matrix adjust., Identities:110/191(58%), Positives:137/191(71%), Gaps:0/191(0%) Query 5 AGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVSEQLS 64 + V QGARGKYRAEL EKR+DHV LCD D+ K++PWF DGE+A+ VS L Sbjct 5 SSVTTQGARGKYRAELYNEKRSDHVVCTVPLCDTDDMASKLTPWFEDGETAFNLVSSILK 64 Query 65 KGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIGTTLQ 124 + K+LFVP ++ ++HLPGPRVYLVERLTGG S F+VNQLAY+ G ++ TTL Sbjct 65 EKGKILFVPMHMQRAMKHLPGPRVYLVERLTGGMLSQHFLVNQLAYKEHVGATMMRTTLN 124 Query 125 GKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADPCGKY 184 K +GMFFP+D LVTGE+ FLLRK G GG FRD W+ PY++++D LEADP GKY Sbjct 125 AKPLGMFFPYDLTLVTGEYTFLLRKNGLGGQLFRDRSWERKDNPYAEILDDLEADPTGKY 184 Query 185 SQSLLKKLVGG 195 SQ+LLKKL+GG Sbjct 185 SQNLLKKLIGG 195 >ORF1ab [Middle East respiratory syndrome-related coronavirus] Sequence ID: AVV62524.1 Length: 7093 Range 1: 1 to 196 Score:235 bits(599), Expect:2e-68, Method:Compositional matrix adjust., Identities:122/198(62%), Positives:141/198(71%), Gaps:5/198(2%) Query 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS 60 MS VAGV QGAR YRA L EKR DHVSL S C AGD K+SPWFMDG++AY V Sbjct 1 MSSVAGVVAQGARNMYRAALKNEKRQDHVSLTVSCCGAGDQAAKLSPWFMDGQNAYXTVK 60 Query 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 L KLLFVP L GFI HLPGPRV+LVE LTGGTYS PFMVNQ+A+ ++A + ++G Sbjct 61 ATLRNKEKLLFVPFKLTGFINHLPGPRVFLVEWLTGGTYSAPFMVNQIAFSHSANDPLLG 120 Query 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYN---WTPYSDLMDALE 177 TTLQGK VG FFP+D L TGE+ FLLRK G GGN FR P D + + PY ++ DAL+ Sbjct 121 TTLQGKPVGYFFPYDPALETGEYTFLLRKNGRGGNHFRH-PLDEDEIIYFPY-EVFDALQ 178 Query 178 ADPCGKYSQSLLKKLVGG 195 DP GKYS+ LL KLVGG Sbjct 179 DDPKGKYSKKLLNKLVGG 196 >ORF1a [Tylonycteris bat coronavirus HKU4] Sequence ID: AWH65887.1 Length: 4442 Range 1: 5 to 195 Score:234 bits(598), Expect:2e-68, Method:Compositional matrix adjust., Identities:109/191(57%), Positives:137/191(71%), Gaps:0/191(0%) Query 5 AGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVSEQLS 64 A Q ARGKYRAEL EKR+DHV+ LCD D+ K++PWF DGE+A+ VS L Sbjct 5 ASATTQSARGKYRAELYNEKRSDHVACTVPLCDTEDMACKLTPWFEDGETAFNQVSSILK 64 Query 65 KGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIGTTLQ 124 + K+LFVP ++ ++ LPGPRVYLVERLTGG S F+VNQLAY++ G ++ TTL Sbjct 65 EKGKILFVPMHMQMAMKFLPGPRVYLVERLTGGMLSKHFLVNQLAYKDHVGAAMMRTTLN 124 Query 125 GKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADPCGKY 184 K +GMFFP+D+ L TGE+ FLLRK G GG FR+ PW+ TPY +++D LEADP GKY Sbjct 125 AKPLGMFFPYDSSLETGEYTFLLRKNGLGGQLFRERPWNRKETPYVEILDDLEADPTGKY 184 Query 185 SQSLLKKLVGG 195 SQ+LLKKLVGG Sbjct 185 SQNLLKKLVGG 195 >ORF1ab [Tylonycteris bat coronavirus HKU4] Sequence ID: AWH65886.1 Length: 7126 Range 1: 5 to 195 Score:234 bits(598), Expect:3e-68, Method:Compositional matrix adjust., Identities:109/191(57%), Positives:137/191(71%), Gaps:0/191(0%) Query 5 AGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVSEQLS 64 A Q ARGKYRAEL EKR+DHV+ LCD D+ K++PWF DGE+A+ VS L Sbjct 5 ASATTQSARGKYRAELYNEKRSDHVACTVPLCDTEDMACKLTPWFEDGETAFNQVSSILK 64 Query 65 KGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIGTTLQ 124 + K+LFVP ++ ++ LPGPRVYLVERLTGG S F+VNQLAY++ G ++ TTL Sbjct 65 EKGKILFVPMHMQMAMKFLPGPRVYLVERLTGGMLSKHFLVNQLAYKDHVGAAMMRTTLN 124 Query 125 GKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADPCGKY 184 K +GMFFP+D+ L TGE+ FLLRK G GG FR+ PW+ TPY +++D LEADP GKY Sbjct 125 AKPLGMFFPYDSSLETGEYTFLLRKNGLGGQLFRERPWNRKETPYVEILDDLEADPTGKY 184 Query 185 SQSLLKKLVGG 195 SQ+LLKKLVGG Sbjct 185 SQNLLKKLVGG 195 >ORF1a [Tylonycteris bat coronavirus HKU4] Sequence ID: AWH65876.1 Length: 4442 Range 1: 5 to 195 Score:234 bits(598), Expect:3e-68, Method:Compositional matrix adjust., Identities:108/191(57%), Positives:137/191(71%), Gaps:0/191(0%) Query 5 AGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVSEQLS 64 A Q ARGKYRAEL EKR+DH++ LCD D+ K++PWF DGE+A+ VS L Sbjct 5 ASATTQSARGKYRAELYNEKRSDHIACTVPLCDTEDMACKLTPWFEDGETAFNQVSSILK 64 Query 65 KGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIGTTLQ 124 + K+LFVP ++ ++ LPGPRVYLVERLTGG S F+VNQLAY++ G ++ TTL Sbjct 65 EKGKILFVPMHMQMAMKFLPGPRVYLVERLTGGMLSKHFLVNQLAYKDHVGAAMMRTTLN 124 Query 125 GKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADPCGKY 184 K +GMFFP+D+ L TGE+ FLLRK G GG FR+ PW+ TPY +++D LEADP GKY Sbjct 125 AKPLGMFFPYDSSLETGEYTFLLRKNGLGGQLFRERPWNRKETPYVEILDDLEADPTGKY 184 Query 185 SQSLLKKLVGG 195 SQ+LLKKLVGG Sbjct 185 SQNLLKKLVGG 195 >ORF1a, partial [Middle East respiratory syndrome-related coronavirus] Sequence ID: AHI48783.1 Length: 630 Range 1: 1 to 193 Score:227 bits(579), Expect:3e-68, Method:Compositional matrix adjust., Identities:115/195(59%), Positives:139/195(71%), Gaps:2/195(1%) Query 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS 60 MSFVAGV QGARG YRA LN+EK DHVSL LC +G+LV K+SPWFMDGE+AY+ V Sbjct 1 MSFVAGVTAQGARGTYRAALNSEKHQDHVSLTVPLCGSGNLVEKLSPWFMDGENAYEVVK 60 Query 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 L K LL+VP L G RHLPGPRVYLVERL +PFMVNQLAY ++A ++G Sbjct 61 AMLLKKEPLLYVPIRLAGHTRHLPGPRVYLVERLIAC--ENPFMVNQLAYSSSANGSLVG 118 Query 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADP 180 TTLQGK +GMFFP+D +LVTG+ LLRK G GG + ++ + T + MD EADP Sbjct 119 TTLQGKPIGMFFPYDIELVTGKQNILLRKYGRGGYHYTPFHYERDNTSCPEWMDDFEADP 178 Query 181 CGKYSQSLLKKLVGG 195 GKY+Q+LLKKL+GG Sbjct 179 KGKYAQNLLKKLIGG 193 >ORF1a, partial [Middle East respiratory syndrome-related coronavirus] Sequence ID: AHI48782.1 Length: 630 Range 1: 1 to 193 Score:227 bits(579), Expect:4e-68, Method:Compositional matrix adjust., Identities:115/195(59%), Positives:139/195(71%), Gaps:2/195(1%) Query 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS 60 MSFVAGV QGARG YRA LN+EK DHVSL LC +G+LV K+SPWFMDGE+AY+ V Sbjct 1 MSFVAGVIAQGARGTYRAALNSEKHQDHVSLTVPLCGSGNLVEKLSPWFMDGENAYEVVK 60 Query 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 L K LL+VP L G RHLPGPRVYLVERL +PFMVNQLAY ++A ++G Sbjct 61 AMLLKKEPLLYVPIRLAGHTRHLPGPRVYLVERLIAC--ENPFMVNQLAYSSSANGSLVG 118 Query 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADP 180 TTLQGK +GMFFP+D +LVTG+ LLRK G GG + ++ + T + MD EADP Sbjct 119 TTLQGKPIGMFFPYDIELVTGKQNILLRKYGRGGYHYTPFHYERDNTSCPEWMDDFEADP 178 Query 181 CGKYSQSLLKKLVGG 195 GKY+Q+LLKKL+GG Sbjct 179 KGKYAQNLLKKLIGG 193 >ORF1ab [Tylonycteris bat coronavirus HKU4] Sequence ID: AWH65875.1 Length: 7127 Range 1: 5 to 195 Score:234 bits(596), Expect:4e-68, Method:Compositional matrix adjust., Identities:108/191(57%), Positives:137/191(71%), Gaps:0/191(0%) Query 5 AGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVSEQLS 64 A Q ARGKYRAEL EKR+DH++ LCD D+ K++PWF DGE+A+ VS L Sbjct 5 ASATTQSARGKYRAELYNEKRSDHIACTVPLCDTEDMACKLTPWFEDGETAFNQVSSILK 64 Query 65 KGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIGTTLQ 124 + K+LFVP ++ ++ LPGPRVYLVERLTGG S F+VNQLAY++ G ++ TTL Sbjct 65 EKGKILFVPMHMQMAMKFLPGPRVYLVERLTGGMLSKHFLVNQLAYKDHVGAAMMRTTLN 124 Query 125 GKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADPCGKY 184 K +GMFFP+D+ L TGE+ FLLRK G GG FR+ PW+ TPY +++D LEADP GKY Sbjct 125 AKPLGMFFPYDSSLETGEYTFLLRKNGLGGQLFRERPWNRKETPYVEILDDLEADPTGKY 184 Query 185 SQSLLKKLVGG 195 SQ+LLKKLVGG Sbjct 185 SQNLLKKLVGG 195 >ORF1ab, partial [Middle East respiratory syndrome-related coronavirus] Sequence ID: AGV08464.1 Length: 642 Range 1: 1 to 193 Score:227 bits(578), Expect:5e-68, Method:Compositional matrix adjust., Identities:115/195(59%), Positives:139/195(71%), Gaps:2/195(1%) Query 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS 60 MSFVAGV QGARG YRA LN+EK DHVSL LC +G+LV K+SPWFMDGE+AY+ V Sbjct 1 MSFVAGVTAQGARGTYRAALNSEKHQDHVSLTVPLCGSGNLVEKLSPWFMDGENAYEVVK 60 Query 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 L K LL+VP L G RHLPGPRVYLVERL +PFMVNQLAY ++A ++G Sbjct 61 AMLLKKEPLLYVPIRLAGHTRHLPGPRVYLVERLIAC--ENPFMVNQLAYSSSANGSLVG 118 Query 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADP 180 TTLQGK +GMFFP+D +LVTG+ LLRK G GG + ++ + T + MD EADP Sbjct 119 TTLQGKPIGMFFPYDIELVTGKQNILLRKYGRGGYHYTPFHYERDNTSCPEWMDDFEADP 178 Query 181 CGKYSQSLLKKLVGG 195 GKY+Q+LLKKL+GG Sbjct 179 KGKYAQNLLKKLIGG 193 >ORF1a, partial [Middle East respiratory syndrome-related coronavirus] Sequence ID: AHI48793.1 Length: 738 Range 1: 1 to 193 Score:227 bits(579), Expect:2e-67, Method:Compositional matrix adjust., Identities:115/195(59%), Positives:139/195(71%), Gaps:2/195(1%) Query 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS 60 MSFVAGV QGARG YRA LN+EK DHVSL LC +G+LV K+SPWFMDGE+AY+ V Sbjct 1 MSFVAGVTAQGARGTYRAALNSEKHQDHVSLTVPLCGSGNLVEKLSPWFMDGENAYEVVK 60 Query 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 L K LL+VP L G RHLPGPRVYLVERL +PFMVNQLAY ++A ++G Sbjct 61 AMLLKKEPLLYVPIRLAGHTRHLPGPRVYLVERLIAC--ENPFMVNQLAYSSSANGSLVG 118 Query 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADP 180 TTLQGK +GMFFP+D +LVTG+ LLRK G GG + ++ + T + MD EADP Sbjct 119 TTLQGKPIGMFFPYDIELVTGKQNILLRKYGRGGYHYTPFHYERDNTSCPEWMDDFEADP 178 Query 181 CGKYSQSLLKKLVGG 195 GKY+Q+LLKKL+GG Sbjct 179 KGKYAQNLLKKLIGG 193 >ORF1ab, partial [Middle East respiratory syndrome-related coronavirus] Sequence ID: AGV08403.1 Length: 627 Range 1: 1 to 193 Score:225 bits(573), Expect:2e-67, Method:Compositional matrix adjust., Identities:114/195(58%), Positives:138/195(70%), Gaps:2/195(1%) Query 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS 60 MSFVAGV QGARG YRA LN+EK DHVSL LC +G+LV K+SPWFMDGE+AY+ V Sbjct 1 MSFVAGVTAQGARGTYRAALNSEKHQDHVSLTVPLCGSGNLVEKLSPWFMDGENAYEVVK 60 Query 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 L K LL+VP L G RHLPGPRVYLVERL +PFMVNQLAY ++A ++G Sbjct 61 AMLLKKEPLLYVPIRLAGHTRHLPGPRVYLVERLIAC--ENPFMVNQLAYSSSANGSLVG 118 Query 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADP 180 TTLQGK +GMFFP+D +LVTG+ LLRK G GG + ++ + + MD EADP Sbjct 119 TTLQGKPIGMFFPYDIELVTGKQNILLRKYGRGGYHYTPFHYERDNXSCPEWMDDFEADP 178 Query 181 CGKYSQSLLKKLVGG 195 GKY+Q+LLKKL+GG Sbjct 179 KGKYAQNLLKKLIGG 193 >ORF1a [Middle East respiratory syndrome-related coronavirus] Sequence ID: AHI48761.1 Length: 4391 Range 1: 1 to 193 Score:231 bits(590), Expect:4e-67, Method:Compositional matrix adjust., Identities:116/195(59%), Positives:140/195(71%), Gaps:2/195(1%) Query 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS 60 MSFVAGV QGARG YRA LN+EK DHVSL LC +G+LV K+SPWFMDGE+AY+ V Sbjct 1 MSFVAGVIAQGARGTYRAALNSEKHQDHVSLTVPLCGSGNLVEKLSPWFMDGENAYEVVK 60 Query 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 L K LL+VP L G RHLPGPRVYLVERL +PFMVNQLAY ++A ++G Sbjct 61 AMLLKKEPLLYVPIRLAGHTRHLPGPRVYLVERLIAC--ENPFMVNQLAYSSSANGSLVG 118 Query 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADP 180 TTLQGK +GMFFP+D +LVTG+ LLRK G GG + ++ + T Y + MD EADP Sbjct 119 TTLQGKPIGMFFPYDIELVTGKQNILLRKYGRGGYHYTPFHYERDNTSYPEWMDDFEADP 178 Query 181 CGKYSQSLLKKLVGG 195 GKY+Q+LLKKL+GG Sbjct 179 KGKYAQNLLKKLIGG 193 >ORF1a [Middle East respiratory syndrome-related coronavirus] Sequence ID: AHI48757.1 Length: 4391 Range 1: 1 to 193 Score:231 bits(590), Expect:4e-67, Method:Compositional matrix adjust., Identities:116/195(59%), Positives:140/195(71%), Gaps:2/195(1%) Query 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS 60 MSFVAGV QGARG YRA LN+EK DHVSL LC +G+LV K+SPWFMDGE+AY+ V Sbjct 1 MSFVAGVIAQGARGTYRAALNSEKHQDHVSLTVPLCGSGNLVEKLSPWFMDGENAYEVVK 60 Query 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 L K LL+VP L G RHLPGPRVYLVERL +PFMVNQLAY ++A ++G Sbjct 61 AMLLKKEPLLYVPIRLAGHTRHLPGPRVYLVERLIAC--ENPFMVNQLAYSSSANGSLVG 118 Query 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADP 180 TTLQGK +GMFFP+D +LVTG+ LLRK G GG + ++ + T Y + MD EADP Sbjct 119 TTLQGKPIGMFFPYDIELVTGKQNILLRKYGRGGYHYTPFHYERDNTSYPEWMDDFEADP 178 Query 181 CGKYSQSLLKKLVGG 195 GKY+Q+LLKKL+GG Sbjct 179 KGKYAQNLLKKLIGG 193 >ORF1ab [Middle East respiratory syndrome-related coronavirus] Sequence ID: ATG84820.1 Length: 7078 Range 1: 1 to 193 Score:231 bits(589), Expect:4e-67, Method:Compositional matrix adjust., Identities:116/195(59%), Positives:140/195(71%), Gaps:2/195(1%) Query 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS 60 MSFVAGV QGARG YRA LN+EK DHVSL LC +G+LV K+SPWFMDGE+AY+ V Sbjct 1 MSFVAGVIAQGARGTYRAALNSEKHQDHVSLTVPLCGSGNLVEKLSPWFMDGENAYEVVK 60 Query 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 L K LL+VP L G IRHLPGPRVYLVERL +PFMVNQLAY ++A ++G Sbjct 61 AMLLKKEPLLYVPIRLAGHIRHLPGPRVYLVERLIAC--ENPFMVNQLAYSSSANGSLVG 118 Query 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADP 180 TTLQGK +GMFFP+D +LVTG+ LLRK G GG + ++ + T + MD EADP Sbjct 119 TTLQGKPIGMFFPYDIELVTGKQNILLRKYGRGGYHYTPVHYERDNTSCPEWMDDFEADP 178 Query 181 CGKYSQSLLKKLVGG 195 GKY+Q+LLKKL+GG Sbjct 179 KGKYAQNLLKKLIGG 193 >ORF1a [Middle East respiratory syndrome-related coronavirus] Sequence ID: ATG84821.1 Length: 4391 Range 1: 1 to 193 Score:231 bits(589), Expect:4e-67, Method:Compositional matrix adjust., Identities:116/195(59%), Positives:140/195(71%), Gaps:2/195(1%) Query 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS 60 MSFVAGV QGARG YRA LN+EK DHVSL LC +G+LV K+SPWFMDGE+AY+ V Sbjct 1 MSFVAGVIAQGARGTYRAALNSEKHQDHVSLTVPLCGSGNLVEKLSPWFMDGENAYEVVK 60 Query 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 L K LL+VP L G IRHLPGPRVYLVERL +PFMVNQLAY ++A ++G Sbjct 61 AMLLKKEPLLYVPIRLAGHIRHLPGPRVYLVERLIAC--ENPFMVNQLAYSSSANGSLVG 118 Query 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADP 180 TTLQGK +GMFFP+D +LVTG+ LLRK G GG + ++ + T + MD EADP Sbjct 119 TTLQGKPIGMFFPYDIELVTGKQNILLRKYGRGGYHYTPVHYERDNTSCPEWMDDFEADP 178 Query 181 CGKYSQSLLKKLVGG 195 GKY+Q+LLKKL+GG Sbjct 179 KGKYAQNLLKKLIGG 193 >ORF1ab, partial [Middle East respiratory syndrome-related coronavirus] Sequence ID: AHI48760.1 Length: 6096 Range 1: 1 to 193 Score:231 bits(589), Expect:4e-67, Method:Compositional matrix adjust., Identities:116/195(59%), Positives:140/195(71%), Gaps:2/195(1%) Query 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS 60 MSFVAGV QGARG YRA LN+EK DHVSL LC +G+LV K+SPWFMDGE+AY+ V Sbjct 1 MSFVAGVIAQGARGTYRAALNSEKHQDHVSLTVPLCGSGNLVEKLSPWFMDGENAYEVVK 60 Query 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 L K LL+VP L G RHLPGPRVYLVERL +PFMVNQLAY ++A ++G Sbjct 61 AMLLKKEPLLYVPIRLAGHTRHLPGPRVYLVERLIAC--ENPFMVNQLAYSSSANGSLVG 118 Query 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADP 180 TTLQGK +GMFFP+D +LVTG+ LLRK G GG + ++ + T Y + MD EADP Sbjct 119 TTLQGKPIGMFFPYDIELVTGKQNILLRKYGRGGYHYTPFHYERDNTSYPEWMDDFEADP 178 Query 181 CGKYSQSLLKKLVGG 195 GKY+Q+LLKKL+GG Sbjct 179 KGKYAQNLLKKLIGG 193 >ORF1ab, partial [Middle East respiratory syndrome-related coronavirus] Sequence ID: AHI48756.1 Length: 6313 Range 1: 1 to 193 Score:231 bits(589), Expect:4e-67, Method:Compositional matrix adjust., Identities:116/195(59%), Positives:140/195(71%), Gaps:2/195(1%) Query 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS 60 MSFVAGV QGARG YRA LN+EK DHVSL LC +G+LV K+SPWFMDGE+AY+ V Sbjct 1 MSFVAGVIAQGARGTYRAALNSEKHQDHVSLTVPLCGSGNLVEKLSPWFMDGENAYEVVK 60 Query 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 L K LL+VP L G RHLPGPRVYLVERL +PFMVNQLAY ++A ++G Sbjct 61 AMLLKKEPLLYVPIRLAGHTRHLPGPRVYLVERLIAC--ENPFMVNQLAYSSSANGSLVG 118 Query 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADP 180 TTLQGK +GMFFP+D +LVTG+ LLRK G GG + ++ + T Y + MD EADP Sbjct 119 TTLQGKPIGMFFPYDIELVTGKQNILLRKYGRGGYHYTPFHYERDNTSYPEWMDDFEADP 178 Query 181 CGKYSQSLLKKLVGG 195 GKY+Q+LLKKL+GG Sbjct 179 KGKYAQNLLKKLIGG 193 >ORF1a [Middle East respiratory syndrome-related coronavirus] Sequence ID: AVN89353.1 Length: 4390 Range 1: 1 to 193 Score:231 bits(589), Expect:5e-67, Method:Compositional matrix adjust., Identities:116/195(59%), Positives:139/195(71%), Gaps:2/195(1%) Query 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS 60 MSFVAGV QGARG YRA LN+EK DHVSL LC +G+LV K+SPWFMDGE+AY+ V Sbjct 1 MSFVAGVTAQGARGTYRAALNSEKHQDHVSLTVPLCGSGNLVEKLSPWFMDGENAYEMVK 60 Query 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 L K LL+VP L G RHLPGPRVYLVERL +PFMVNQLAY ++A ++G Sbjct 61 AMLLKKEPLLYVPIRLAGHTRHLPGPRVYLVERLIAC--ENPFMVNQLAYSSSANGSLVG 118 Query 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADP 180 TTLQGK +GMFFP+D +LVTG+ LLRK G GG + ++ N T + MD EADP Sbjct 119 TTLQGKPIGMFFPYDIELVTGKQNILLRKYGRGGYHYTPFHYERNNTSCPEWMDDFEADP 178 Query 181 CGKYSQSLLKKLVGG 195 GKY+Q+LLKKL+GG Sbjct 179 KGKYAQNLLKKLIGG 193 >orf1ab polyprotein [Tylonycteris pachypus bat coronavirus HKU4-related] Sequence ID: QHA24677.1 Length: 7129 Range 1: 5 to 195 Score:231 bits(588), Expect:6e-67, Method:Compositional matrix adjust., Identities:108/191(57%), Positives:137/191(71%), Gaps:0/191(0%) Query 5 AGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVSEQLS 64 A V QGARGKYRAEL EKR+DHV+ LC D+ K++PWF +GE+A+ VS L Sbjct 5 ASVTTQGARGKYRAELYNEKRSDHVACTVPLCGTEDMACKLTPWFENGETAFNQVSSILK 64 Query 65 KGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIGTTLQ 124 + K+LFVP ++ ++ LPGPRVYLVERLTGG S F+VNQLAY++ G ++ TTL Sbjct 65 EKGKVLFVPMHMQRAMKFLPGPRVYLVERLTGGMLSKHFLVNQLAYKDHVGAAMMRTTLN 124 Query 125 GKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADPCGKY 184 K +GMFFP+D+ L TGE+ FLLRK G GG FR+ PW TPY +++D LEADP GKY Sbjct 125 AKPLGMFFPYDSSLETGEYTFLLRKDGLGGQLFRERPWGRKETPYVEILDDLEADPTGKY 184 Query 185 SQSLLKKLVGG 195 SQ+LLKKL+GG Sbjct 185 SQNLLKKLIGG 195 >ORF1a [Middle East respiratory syndrome-related coronavirus] Sequence ID: AVN89375.1 Length: 4390 Range 1: 1 to 193 Score:231 bits(588), Expect:6e-67, Method:Compositional matrix adjust., Identities:116/195(59%), Positives:139/195(71%), Gaps:2/195(1%) Query 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS 60 MSFVAGV QGARG YRA LN+EK DHVSL LC +G+LV K+SPWFMDGE+AY+ V Sbjct 1 MSFVAGVTAQGARGTYRAALNSEKHQDHVSLTVPLCGSGNLVEKLSPWFMDGENAYEVVK 60 Query 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 L K LL+VP L G RHLPGPRVYLVERL +PFMVNQLAY ++A ++G Sbjct 61 AMLLKKEPLLYVPIRLAGHTRHLPGPRVYLVERLIAC--ENPFMVNQLAYSSSANGSLVG 118 Query 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADP 180 TTLQGK +GMFFP+D +LVTG+ LLRK G GG + ++ N T + MD EADP Sbjct 119 TTLQGKPIGMFFPYDIELVTGKQNILLRKYGRGGYHYTPFHYERNNTSCPEWMDDFEADP 178 Query 181 CGKYSQSLLKKLVGG 195 GKY+Q+LLKKL+GG Sbjct 179 KGKYAQNLLKKLIGG 193 >ORF1ab [Middle East respiratory syndrome-related coronavirus] Sequence ID: AVN89352.1 Length: 7077 Range 1: 1 to 193 Score:231 bits(588), Expect:7e-67, Method:Compositional matrix adjust., Identities:116/195(59%), Positives:139/195(71%), Gaps:2/195(1%) Query 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS 60 MSFVAGV QGARG YRA LN+EK DHVSL LC +G+LV K+SPWFMDGE+AY+ V Sbjct 1 MSFVAGVTAQGARGTYRAALNSEKHQDHVSLTVPLCGSGNLVEKLSPWFMDGENAYEMVK 60 Query 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 L K LL+VP L G RHLPGPRVYLVERL +PFMVNQLAY ++A ++G Sbjct 61 AMLLKKEPLLYVPIRLAGHTRHLPGPRVYLVERLIAC--ENPFMVNQLAYSSSANGSLVG 118 Query 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADP 180 TTLQGK +GMFFP+D +LVTG+ LLRK G GG + ++ N T + MD EADP Sbjct 119 TTLQGKPIGMFFPYDIELVTGKQNILLRKYGRGGYHYTPFHYERNNTSCPEWMDDFEADP 178 Query 181 CGKYSQSLLKKLVGG 195 GKY+Q+LLKKL+GG Sbjct 179 KGKYAQNLLKKLIGG 193 >ORF1a [Middle East respiratory syndrome-related coronavirus] Sequence ID: AVN89419.1 Length: 4390 Range 1: 1 to 193 Score:231 bits(588), Expect:7e-67, Method:Compositional matrix adjust., Identities:116/195(59%), Positives:139/195(71%), Gaps:2/195(1%) Query 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS 60 MSFVAGV QGARG YRA LN+EK DHVSL LC +G+LV K+SPWFMDGE+AY+ V Sbjct 1 MSFVAGVTAQGARGTYRAALNSEKHQDHVSLTVPLCGSGNLVEKLSPWFMDGENAYEVVK 60 Query 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 L K LL+VP L G RHLPGPRVYLVERL +PFMVNQLAY ++A ++G Sbjct 61 AMLLKKEPLLYVPIRLAGHTRHLPGPRVYLVERLIAC--ENPFMVNQLAYSSSANGSLVG 118 Query 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADP 180 TTLQGK +GMFFP+D +LVTG+ LLRK G GG + ++ N T + MD EADP Sbjct 119 TTLQGKPIGMFFPYDIELVTGKQNILLRKYGRGGYHYTPFHYERNNTSCPEWMDDFEADP 178 Query 181 CGKYSQSLLKKLVGG 195 GKY+Q+LLKKL+GG Sbjct 179 KGKYAQNLLKKLIGG 193 >ORF1a [Middle East respiratory syndrome-related coronavirus] Sequence ID: AVN89441.1 Length: 4390 Range 1: 1 to 193 Score:231 bits(588), Expect:7e-67, Method:Compositional matrix adjust., Identities:116/195(59%), Positives:139/195(71%), Gaps:2/195(1%) Query 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS 60 MSFVAGV QGARG YRA LN+EK DHVSL LC +G+LV K+SPWFMDGE+AY+ V Sbjct 1 MSFVAGVTAQGARGTYRAALNSEKHQDHVSLTVPLCGSGNLVEKLSPWFMDGENAYEVVK 60 Query 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 L K LL+VP L G RHLPGPRVYLVERL +PFMVNQLAY ++A ++G Sbjct 61 AMLLKKEPLLYVPIRLAGHTRHLPGPRVYLVERLIAC--ENPFMVNQLAYSSSANGSLVG 118 Query 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADP 180 TTLQGK +GMFFP+D +LVTG+ LLRK G GG + ++ N T + MD EADP Sbjct 119 TTLQGKPIGMFFPYDIELVTGKQNILLRKYGRGGYHYTPFHYERNNTSCPEWMDDFEADP 178 Query 181 CGKYSQSLLKKLVGG 195 GKY+Q+LLKKL+GG Sbjct 179 KGKYAQNLLKKLIGG 193 >ORF1a [Middle East respiratory syndrome-related coronavirus] Sequence ID: AVN89430.1 Length: 4390 Range 1: 1 to 193 Score:230 bits(587), Expect:7e-67, Method:Compositional matrix adjust., Identities:116/195(59%), Positives:139/195(71%), Gaps:2/195(1%) Query 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS 60 MSFVAGV QGARG YRA LN+EK DHVSL LC +G+LV K+SPWFMDGE+AY+ V Sbjct 1 MSFVAGVTAQGARGTYRAALNSEKHQDHVSLTVPLCGSGNLVEKLSPWFMDGENAYEVVK 60 Query 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 L K LL+VP L G RHLPGPRVYLVERL +PFMVNQLAY ++A ++G Sbjct 61 AMLLKKEPLLYVPIRLAGHTRHLPGPRVYLVERLIAC--ENPFMVNQLAYSSSANGSLVG 118 Query 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADP 180 TTLQGK +GMFFP+D +LVTG+ LLRK G GG + ++ N T + MD EADP Sbjct 119 TTLQGKPIGMFFPYDIELVTGKQNILLRKYGRGGYHYTPFHYERNNTSCPEWMDDFEADP 178 Query 181 CGKYSQSLLKKLVGG 195 GKY+Q+LLKKL+GG Sbjct 179 KGKYAQNLLKKLIGG 193 >ORF1a [Middle East respiratory syndrome-related coronavirus] Sequence ID: AVN89397.1 Length: 4390 >ORF1a [Middle East respiratory syndrome-related coronavirus] Sequence ID: AVN89408.1 Length: 4390 Range 1: 1 to 193 Score:230 bits(587), Expect:7e-67, Method:Compositional matrix adjust., Identities:116/195(59%), Positives:139/195(71%), Gaps:2/195(1%) Query 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS 60 MSFVAGV QGARG YRA LN+EK DHVSL LC +G+LV K+SPWFMDGE+AY+ V Sbjct 1 MSFVAGVTAQGARGTYRAALNSEKHQDHVSLTVPLCGSGNLVEKLSPWFMDGENAYEVVK 60 Query 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 L K LL+VP L G RHLPGPRVYLVERL +PFMVNQLAY ++A ++G Sbjct 61 AMLLKKEPLLYVPIRLAGHTRHLPGPRVYLVERLIAC--ENPFMVNQLAYSSSANGSLVG 118 Query 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADP 180 TTLQGK +GMFFP+D +LVTG+ LLRK G GG + ++ N T + MD EADP Sbjct 119 TTLQGKPIGMFFPYDIELVTGKQNILLRKYGRGGYHYTPFHYERNNTSCPEWMDDFEADP 178 Query 181 CGKYSQSLLKKLVGG 195 GKY+Q+LLKKL+GG Sbjct 179 KGKYAQNLLKKLIGG 193 >1A polyprotein [Middle East respiratory syndrome-related coronavirus] Sequence ID: ASU90889.1 Length: 4391 Range 1: 1 to 193 Score:230 bits(587), Expect:8e-67, Method:Compositional matrix adjust., Identities:116/195(59%), Positives:140/195(71%), Gaps:2/195(1%) Query 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS 60 MSFVAGV QGARG YRA LN+EK DHVSL LC +G+LV K+SPWFMDGE+AY+ V Sbjct 1 MSFVAGVIAQGARGTYRAALNSEKHQDHVSLTVPLCGSGNLVEKLSPWFMDGENAYEVVK 60 Query 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 L K LL+VP L G IRHLPGPRVYLVERL +PFMVNQLAY ++A ++G Sbjct 61 AMLLKKEPLLYVPIRLAGHIRHLPGPRVYLVERLIAC--ENPFMVNQLAYSSSANGSLVG 118 Query 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADP 180 TTLQGK +GMFFP+D +LVTG+ LLRK G GG + ++ + T + MD EADP Sbjct 119 TTLQGKPIGMFFPYDIELVTGKQNILLRKYGRGGYHYTPFHYERDNTSCPEWMDDFEADP 178 Query 181 CGKYSQSLLKKLVGG 195 GKY+Q+LLKKL+GG Sbjct 179 KGKYAQNLLKKLIGG 193 >ORF1a [Middle East respiratory syndrome-related coronavirus] Sequence ID: AVN89386.1 Length: 4390 Range 1: 1 to 193 Score:230 bits(587), Expect:8e-67, Method:Compositional matrix adjust., Identities:116/195(59%), Positives:139/195(71%), Gaps:2/195(1%) Query 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS 60 MSFVAGV QGARG YRA LN+EK DHVSL LC +G+LV K+SPWFMDGE+AY+ V Sbjct 1 MSFVAGVTAQGARGTYRAALNSEKHQDHVSLTVPLCGSGNLVEKLSPWFMDGENAYEVVK 60 Query 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 L K LL+VP L G RHLPGPRVYLVERL +PFMVNQLAY ++A ++G Sbjct 61 AMLLKKEPLLYVPIRLAGHTRHLPGPRVYLVERLIAC--ENPFMVNQLAYSSSANGSLVG 118 Query 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADP 180 TTLQGK +GMFFP+D +LVTG+ LLRK G GG + ++ N T + MD EADP Sbjct 119 TTLQGKPIGMFFPYDIELVTGKQNILLRKYGRGGYHYTPFHYERNNTSCPEWMDDFEADP 178 Query 181 CGKYSQSLLKKLVGG 195 GKY+Q+LLKKL+GG Sbjct 179 KGKYAQNLLKKLIGG 193 >ORF1a [Middle East respiratory syndrome-related coronavirus] Sequence ID: AVN89452.1 Length: 4390 Range 1: 1 to 193 Score:230 bits(587), Expect:9e-67, Method:Compositional matrix adjust., Identities:116/195(59%), Positives:139/195(71%), Gaps:2/195(1%) Query 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS 60 MSFVAGV QGARG YRA LN+EK DHVSL LC +G+LV K+SPWFMDGE+AY+ V Sbjct 1 MSFVAGVTAQGARGTYRAALNSEKHQDHVSLTVPLCGSGNLVEKLSPWFMDGENAYEVVK 60 Query 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 L K LL+VP L G RHLPGPRVYLVERL +PFMVNQLAY ++A ++G Sbjct 61 AMLLKKEPLLYVPIRLAGHTRHLPGPRVYLVERLIAC--ENPFMVNQLAYSSSANGSLVG 118 Query 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADP 180 TTLQGK +GMFFP+D +LVTG+ LLRK G GG + ++ N T + MD EADP Sbjct 119 TTLQGKPIGMFFPYDIELVTGKQNILLRKYGRGGYHYTPFHYERNNTSCPEWMDDFEADP 178 Query 181 CGKYSQSLLKKLVGG 195 GKY+Q+LLKKL+GG Sbjct 179 KGKYAQNLLKKLIGG 193 >ORF1a, partial [Middle East respiratory syndrome-related coronavirus] Sequence ID: AHI48778.1 Length: 916 Range 1: 1 to 193 Score:228 bits(581), Expect:9e-67, Method:Compositional matrix adjust., Identities:115/195(59%), Positives:139/195(71%), Gaps:2/195(1%) Query 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS 60 MSFVAGV QGARG YRA LN+EK DHVSL LC +G+LV K+SPWFMDGE+AY+ V Sbjct 1 MSFVAGVTAQGARGTYRAALNSEKHQDHVSLTVPLCGSGNLVEKLSPWFMDGENAYEVVK 60 Query 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 L K LL+VP L G RHLPGPRVYLVERL +PFMVNQLAY ++A ++G Sbjct 61 AMLLKKEPLLYVPIRLAGHTRHLPGPRVYLVERLIAC--ENPFMVNQLAYSSSANGSLVG 118 Query 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADP 180 TTLQGK +GMFFP+D +LVTG+ LLRK G GG + ++ + T + MD EADP Sbjct 119 TTLQGKPIGMFFPYDIELVTGKQNILLRKYGRGGYHYTPFHYERDNTSCPEWMDDFEADP 178 Query 181 CGKYSQSLLKKLVGG 195 GKY+Q+LLKKL+GG Sbjct 179 KGKYAQNLLKKLIGG 193 >ORF1ab [Middle East respiratory syndrome-related coronavirus] Sequence ID: AVN89451.1 Length: 7077 Range 1: 1 to 193 Score:230 bits(586), Expect:1e-66, Method:Compositional matrix adjust., Identities:116/195(59%), Positives:139/195(71%), Gaps:2/195(1%) Query 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS 60 MSFVAGV QGARG YRA LN+EK DHVSL LC +G+LV K+SPWFMDGE+AY+ V Sbjct 1 MSFVAGVTAQGARGTYRAALNSEKHQDHVSLTVPLCGSGNLVEKLSPWFMDGENAYEVVK 60 Query 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 L K LL+VP L G RHLPGPRVYLVERL +PFMVNQLAY ++A ++G Sbjct 61 AMLLKKEPLLYVPIRLAGHTRHLPGPRVYLVERLIAC--ENPFMVNQLAYSSSANGSLVG 118 Query 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADP 180 TTLQGK +GMFFP+D +LVTG+ LLRK G GG + ++ N T + MD EADP Sbjct 119 TTLQGKPIGMFFPYDIELVTGKQNILLRKYGRGGYHYTPFHYERNNTSCPEWMDDFEADP 178 Query 181 CGKYSQSLLKKLVGG 195 GKY+Q+LLKKL+GG Sbjct 179 KGKYAQNLLKKLIGG 193 >1AB polyprotein [Middle East respiratory syndrome-related coronavirus] Sequence ID: ASU90888.1 Length: 7078 Range 1: 1 to 193 Score:230 bits(586), Expect:1e-66, Method:Compositional matrix adjust., Identities:116/195(59%), Positives:140/195(71%), Gaps:2/195(1%) Query 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS 60 MSFVAGV QGARG YRA LN+EK DHVSL LC +G+LV K+SPWFMDGE+AY+ V Sbjct 1 MSFVAGVIAQGARGTYRAALNSEKHQDHVSLTVPLCGSGNLVEKLSPWFMDGENAYEVVK 60 Query 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 L K LL+VP L G IRHLPGPRVYLVERL +PFMVNQLAY ++A ++G Sbjct 61 AMLLKKEPLLYVPIRLAGHIRHLPGPRVYLVERLIAC--ENPFMVNQLAYSSSANGSLVG 118 Query 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADP 180 TTLQGK +GMFFP+D +LVTG+ LLRK G GG + ++ + T + MD EADP Sbjct 119 TTLQGKPIGMFFPYDIELVTGKQNILLRKYGRGGYHYTPFHYERDNTSCPEWMDDFEADP 178 Query 181 CGKYSQSLLKKLVGG 195 GKY+Q+LLKKL+GG Sbjct 179 KGKYAQNLLKKLIGG 193 >ORF1ab [Middle East respiratory syndrome-related coronavirus] Sequence ID: AVN89396.1 Length: 7077 >ORF1ab [Middle East respiratory syndrome-related coronavirus] Sequence ID: AVN89407.1 Length: 7077 Range 1: 1 to 193 Score:230 bits(586), Expect:1e-66, Method:Compositional matrix adjust., Identities:116/195(59%), Positives:139/195(71%), Gaps:2/195(1%) Query 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS 60 MSFVAGV QGARG YRA LN+EK DHVSL LC +G+LV K+SPWFMDGE+AY+ V Sbjct 1 MSFVAGVTAQGARGTYRAALNSEKHQDHVSLTVPLCGSGNLVEKLSPWFMDGENAYEVVK 60 Query 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 L K LL+VP L G RHLPGPRVYLVERL +PFMVNQLAY ++A ++G Sbjct 61 AMLLKKEPLLYVPIRLAGHTRHLPGPRVYLVERLIAC--ENPFMVNQLAYSSSANGSLVG 118 Query 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADP 180 TTLQGK +GMFFP+D +LVTG+ LLRK G GG + ++ N T + MD EADP Sbjct 119 TTLQGKPIGMFFPYDIELVTGKQNILLRKYGRGGYHYTPFHYERNNTSCPEWMDDFEADP 178 Query 181 CGKYSQSLLKKLVGG 195 GKY+Q+LLKKL+GG Sbjct 179 KGKYAQNLLKKLIGG 193 >ORF1ab [Middle East respiratory syndrome-related coronavirus] Sequence ID: AVN89429.1 Length: 7077 Range 1: 1 to 193 Score:230 bits(586), Expect:1e-66, Method:Compositional matrix adjust., Identities:116/195(59%), Positives:139/195(71%), Gaps:2/195(1%) Query 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS 60 MSFVAGV QGARG YRA LN+EK DHVSL LC +G+LV K+SPWFMDGE+AY+ V Sbjct 1 MSFVAGVTAQGARGTYRAALNSEKHQDHVSLTVPLCGSGNLVEKLSPWFMDGENAYEVVK 60 Query 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 L K LL+VP L G RHLPGPRVYLVERL +PFMVNQLAY ++A ++G Sbjct 61 AMLLKKEPLLYVPIRLAGHTRHLPGPRVYLVERLIAC--ENPFMVNQLAYSSSANGSLVG 118 Query 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADP 180 TTLQGK +GMFFP+D +LVTG+ LLRK G GG + ++ N T + MD EADP Sbjct 119 TTLQGKPIGMFFPYDIELVTGKQNILLRKYGRGGYHYTPFHYERNNTSCPEWMDDFEADP 178 Query 181 CGKYSQSLLKKLVGG 195 GKY+Q+LLKKL+GG Sbjct 179 KGKYAQNLLKKLIGG 193 >ORF1ab [Middle East respiratory syndrome-related coronavirus] Sequence ID: AVN89385.1 Length: 7077 Range 1: 1 to 193 Score:230 bits(586), Expect:1e-66, Method:Compositional matrix adjust., Identities:116/195(59%), Positives:139/195(71%), Gaps:2/195(1%) Query 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS 60 MSFVAGV QGARG YRA LN+EK DHVSL LC +G+LV K+SPWFMDGE+AY+ V Sbjct 1 MSFVAGVTAQGARGTYRAALNSEKHQDHVSLTVPLCGSGNLVEKLSPWFMDGENAYEVVK 60 Query 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 L K LL+VP L G RHLPGPRVYLVERL +PFMVNQLAY ++A ++G Sbjct 61 AMLLKKEPLLYVPIRLAGHTRHLPGPRVYLVERLIAC--ENPFMVNQLAYSSSANGSLVG 118 Query 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADP 180 TTLQGK +GMFFP+D +LVTG+ LLRK G GG + ++ N T + MD EADP Sbjct 119 TTLQGKPIGMFFPYDIELVTGKQNILLRKYGRGGYHYTPFHYERNNTSCPEWMDDFEADP 178 Query 181 CGKYSQSLLKKLVGG 195 GKY+Q+LLKKL+GG Sbjct 179 KGKYAQNLLKKLIGG 193 >ORF1ab [Middle East respiratory syndrome-related coronavirus] Sequence ID: AVN89418.1 Length: 7077 Range 1: 1 to 193 Score:230 bits(586), Expect:1e-66, Method:Compositional matrix adjust., Identities:116/195(59%), Positives:139/195(71%), Gaps:2/195(1%) Query 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS 60 MSFVAGV QGARG YRA LN+EK DHVSL LC +G+LV K+SPWFMDGE+AY+ V Sbjct 1 MSFVAGVTAQGARGTYRAALNSEKHQDHVSLTVPLCGSGNLVEKLSPWFMDGENAYEVVK 60 Query 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 L K LL+VP L G RHLPGPRVYLVERL +PFMVNQLAY ++A ++G Sbjct 61 AMLLKKEPLLYVPIRLAGHTRHLPGPRVYLVERLIAC--ENPFMVNQLAYSSSANGSLVG 118 Query 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADP 180 TTLQGK +GMFFP+D +LVTG+ LLRK G GG + ++ N T + MD EADP Sbjct 119 TTLQGKPIGMFFPYDIELVTGKQNILLRKYGRGGYHYTPFHYERNNTSCPEWMDDFEADP 178 Query 181 CGKYSQSLLKKLVGG 195 GKY+Q+LLKKL+GG Sbjct 179 KGKYAQNLLKKLIGG 193 >ORF1ab [Middle East respiratory syndrome-related coronavirus] Sequence ID: AVN89374.1 Length: 7077 Range 1: 1 to 193 Score:230 bits(586), Expect:1e-66, Method:Compositional matrix adjust., Identities:116/195(59%), Positives:139/195(71%), Gaps:2/195(1%) Query 1 MSFVAGVAPQGARGKYRAELNTEKRTDHVSLKASLCDAGDLVLKISPWFMDGESAYKHVS 60 MSFVAGV QGARG YRA LN+EK DHVSL LC +G+LV K+SPWFMDGE+AY+ V Sbjct 1 MSFVAGVTAQGARGTYRAALNSEKHQDHVSLTVPLCGSGNLVEKLSPWFMDGENAYEVVK 60 Query 61 EQLSKGSKLLFVPQTLKGFIRHLPGPRVYLVERLTGGTYSDPFMVNQLAYQNAAGEGVIG 120 L K LL+VP L G RHLPGPRVYLVERL +PFMVNQLAY ++A ++G Sbjct 61 AMLLKKEPLLYVPIRLAGHTRHLPGPRVYLVERLIAC--ENPFMVNQLAYSSSANGSLVG 118 Query 121 TTLQGKRVGMFFPFDADLVTGEFQFLLRKKGFGGNRFRDAPWDYNWTPYSDLMDALEADP 180 TTLQGK +GMFFP+D +LVTG+ LLRK G GG + ++ N T + MD EADP Sbjct 119 TTLQGKPIGMFFPYDIELVTGKQNILLRKYGRGGYHYTPFHYERNNTSCPEWMDDFEADP 178 Query 181 CGKYSQSLLKKLVGG 195 GKY+Q+LLKKL+GG Sbjct 179 KGKYAQNLLKKLIGG 193